Diff of the two buildlogs: -- --- b1/build.log 2025-11-04 00:14:56.430090000 +0000 +++ b2/build.log 2025-11-04 00:28:31.451040167 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Dec 6 18:26:47 -12 2026 -I: pbuilder-time-stamp: 1796624807 +I: Current time: Tue Nov 4 14:15:10 +14 2025 +I: pbuilder-time-stamp: 1762215310 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -27,53 +27,85 @@ dpkg-source: info: applying fix-resources-directory.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/4037026/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1955575/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 4 00:15 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1955575/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1955575/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 nocheck' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='007411b9f04b49a08fec215f73493689' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='4037026' - PS1='# ' - PS2='> ' + INVOCATION_ID=2eea1f1515b44bb1af0142a0ad05f782 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1955575 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eBJnsJUr/pbuilderrc_ytHD --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eBJnsJUr/b1 --logfile b1/build.log toppic_1.7.10+cleaned1-2.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eBJnsJUr/pbuilderrc_8gu2 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eBJnsJUr/b2 --logfile b2/build.log toppic_1.7.10+cleaned1-2.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/4037026/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1955575/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -432,7 +464,7 @@ Get: 279 http://deb.debian.org/debian unstable/main arm64 qtbase5-dev-tools arm64 5.15.17+dfsg-4 [712 kB] Get: 280 http://deb.debian.org/debian unstable/main arm64 qtbase5-dev arm64 5.15.17+dfsg-4 [1122 kB] Get: 281 http://deb.debian.org/debian unstable/main arm64 rapidjson-dev all 1.1.0+dfsg2-7.6 [98.2 kB] -Fetched 182 MB in 2s (73.1 MB/s) +Fetched 182 MB in 2s (112 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19968 files and directories currently installed.) @@ -1355,8 +1387,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Dec 7 06:27:44 UTC 2026. -Universal Time is now: Mon Dec 7 06:27:44 UTC 2026. +Local time is now: Tue Nov 4 00:16:07 UTC 2025. +Universal Time is now: Tue Nov 4 00:16:07 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:arm64 (1.17.0-2+b1) ... @@ -1589,7 +1621,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/toppic-1.7.10+cleaned1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../toppic_1.7.10+cleaned1-2_source.changes +I: user script /srv/workspace/pbuilder/1955575/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1955575/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/toppic-1.7.10+cleaned1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../toppic_1.7.10+cleaned1-2_source.changes dpkg-buildpackage: info: source package toppic dpkg-buildpackage: info: source version 1.7.10+cleaned1-2 dpkg-buildpackage: info: source distribution unstable @@ -1645,7 +1681,7 @@ rst2man debian/topdiff.1.rst > debian/topdiff.1 dh_auto_configure -- \ -DCMAKE_BUILD_TYPE=release - cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DCMAKE_BUILD_TYPE=release .. + cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DCMAKE_BUILD_TYPE=release .. CMake Deprecation Warning at CMakeLists.txt:2 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. @@ -1687,11 +1723,12 @@ -- Checking for one of the modules 'protobuf' -- Found Protobuf: /usr/lib/aarch64-linux-gnu/libprotobuf.so (found version "3.21.12") -- cmake cxx flags -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=$ORIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX --- Configuring done (1.7s) --- Generating done (0.5s) +-- Configuring done (0.8s) +-- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: + BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED @@ -1708,193 +1745,191 @@ make[2]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' make -f CMakeFiles/topfd_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_autogen_timestamp_deps.dir/depend make -f CMakeFiles/topindex_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_autogen_timestamp_deps.dir/depend -make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' make -f CMakeFiles/toppic_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topindex_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topfd_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make -f CMakeFiles/topmg_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -cd 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"--color=" make -f CMakeFiles/topdiff_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_autogen_timestamp_deps.dir/depend -make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' make -f CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/depend make -f CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' +cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu 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/build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/depend +make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu 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/usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' +make -f CMakeFiles/topfd_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -make -f CMakeFiles/topdiff_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'CMakeFiles/topdiff_autogen_timestamp_deps.dir/build'. +make[3]: Nothing to be done for 'CMakeFiles/topfd_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' make -f CMakeFiles/toppic_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_autogen_timestamp_deps.dir/build -make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' make -f CMakeFiles/topmg_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_autogen_timestamp_deps.dir/build +make -f CMakeFiles/topdiff_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/toppic_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -make -f CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build -make -f CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build +make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'CMakeFiles/topdiff_autogen_timestamp_deps.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/topmg_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' +make -f CMakeFiles/topindex_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_autogen_timestamp_deps.dir/build +make -f CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build +make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'CMakeFiles/topindex_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -make -f CMakeFiles/topfd_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_autogen_timestamp_deps.dir/build -make -f CMakeFiles/topindex_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_autogen_timestamp_deps.dir/build -make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'CMakeFiles/topfd_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' make -f CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'CMakeFiles/topindex_autogen_timestamp_deps.dir/build'. +make[3]: Nothing to be done for 'CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' +[ 0%] Built target topfd_autogen_timestamp_deps +make -f CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' make -f CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build -[ 0%] Built target topdiff_autogen_timestamp_deps +make -f CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build +make -f CMakeFiles/topfd_autogen.dir/build.make CMakeFiles/topfd_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -make -f CMakeFiles/topdiff_autogen.dir/build.make CMakeFiles/topdiff_autogen.dir/depend -[ 0%] Built target toppic_autogen_timestamp_deps -make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topdiff_autogen.dir/DependInfo.cmake "--color=" -[ 0%] Built target topmg_autogen_timestamp_deps -[ 0%] Built target topfd_gui_autogen_timestamp_deps -make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -make -f CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build -[ 0%] Built target topindex_gui_autogen_timestamp_deps -make -f CMakeFiles/topfd_gui_autogen.dir/build.make CMakeFiles/topfd_gui_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -[ 0%] Built target topfd_autogen_timestamp_deps -[ 0%] Built target topmg_gui_autogen_timestamp_deps -make -f CMakeFiles/toppic_autogen.dir/build.make CMakeFiles/toppic_autogen.dir/depend -make -f CMakeFiles/topindex_gui_autogen.dir/build.make CMakeFiles/topindex_gui_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/toppic_autogen.dir/DependInfo.cmake "--color=" +make[3]: Nothing to be done for 'CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topfd_autogen.dir/DependInfo.cmake "--color=" +[ 0%] Built target topdiff_autogen_timestamp_deps +[ 0%] Built target topmg_autogen_timestamp_deps make -f CMakeFiles/topmg_autogen.dir/build.make CMakeFiles/topmg_autogen.dir/depend -[ 0%] Built target toppic_gui_autogen_timestamp_deps +make -f CMakeFiles/topdiff_autogen.dir/build.make CMakeFiles/topdiff_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -make -f CMakeFiles/topfd_autogen.dir/build.make CMakeFiles/topfd_autogen.dir/depend cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topmg_autogen.dir/DependInfo.cmake "--color=" +[ 0%] Built target toppic_autogen_timestamp_deps +[ 0%] Built target topfd_gui_autogen_timestamp_deps [ 0%] Built target topindex_autogen_timestamp_deps make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topfd_autogen.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/toppic_gui_autogen.dir/build.make CMakeFiles/toppic_gui_autogen.dir/depend -make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -make -f CMakeFiles/topdiff_autogen.dir/build.make CMakeFiles/topdiff_autogen.dir/build +cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topdiff_autogen.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/topindex_autogen.dir/build.make CMakeFiles/topindex_autogen.dir/depend +[ 0%] Built target topmg_gui_autogen_timestamp_deps make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' +[ 0%] Built target topdiff_gui_autogen_timestamp_deps +cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topindex_autogen.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/topfd_gui_autogen.dir/build.make CMakeFiles/topfd_gui_autogen.dir/depend +make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' +[ 0%] Built target toppic_gui_autogen_timestamp_deps make -f CMakeFiles/topmg_gui_autogen.dir/build.make CMakeFiles/topmg_gui_autogen.dir/depend -cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/toppic_gui_autogen.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/topindex_autogen.dir/build.make CMakeFiles/topindex_autogen.dir/depend +cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/topdiff_gui_autogen.dir/build.make CMakeFiles/topdiff_gui_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' +make -f CMakeFiles/toppic_gui_autogen.dir/build.make CMakeFiles/toppic_gui_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -[ 0%] Built target topdiff_gui_autogen_timestamp_deps +cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/toppic_autogen.dir/build.make CMakeFiles/toppic_autogen.dir/depend cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topindex_autogen.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' +cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/toppic_autogen.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/toppic_gui_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -make -f CMakeFiles/topindex_gui_autogen.dir/build.make CMakeFiles/topindex_gui_autogen.dir/build +make -f CMakeFiles/topfd_autogen.dir/build.make CMakeFiles/topfd_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -[ 0%] Automatic MOC and UIC for target topdiff -make -f CMakeFiles/topdiff_gui_autogen.dir/build.make CMakeFiles/topdiff_gui_autogen.dir/depend +[ 0%] Built target topindex_gui_autogen_timestamp_deps make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' make -f CMakeFiles/topfd_gui_autogen.dir/build.make CMakeFiles/topfd_gui_autogen.dir/build +make -f CMakeFiles/topindex_gui_autogen.dir/build.make CMakeFiles/topindex_gui_autogen.dir/depend +make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' +make -f CMakeFiles/topdiff_autogen.dir/build.make CMakeFiles/topdiff_autogen.dir/build +cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/topindex_autogen.dir/build.make CMakeFiles/topindex_autogen.dir/build make -f CMakeFiles/toppic_autogen.dir/build.make CMakeFiles/toppic_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -make -f CMakeFiles/topmg_autogen.dir/build.make CMakeFiles/topmg_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -[ 0%] Automatic MOC and UIC for target topindex_gui make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -make -f CMakeFiles/topfd_autogen.dir/build.make CMakeFiles/topfd_autogen.dir/build +make -f CMakeFiles/topmg_autogen.dir/build.make CMakeFiles/topmg_autogen.dir/build make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -make -f CMakeFiles/topindex_autogen.dir/build.make CMakeFiles/topindex_autogen.dir/build +make -f CMakeFiles/topdiff_gui_autogen.dir/build.make CMakeFiles/topdiff_gui_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -/usr/bin/cmake -E cmake_autogen 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+AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topdiff_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu +/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topmg_autogen.dir/AutogenInfo.json release 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-I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topindex_autogen.dir/AutogenInfo.json release -make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -make -f CMakeFiles/topdiff_gui_autogen.dir/build.make CMakeFiles/topdiff_gui_autogen.dir/build -/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topfd_autogen.dir/AutogenInfo.json release -make[3]: Entering directory 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-I/usr/include/aarch64-linux-gnu -AutoGen: Refreshing parse cache because it doesn't exist. -AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topindex_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -AutoGen: Refreshing parse cache because it doesn't exist. -[ 0%] Automatic MOC and UIC for target topmg_gui -/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/AutogenInfo.json release -[ 1%] Automatic MOC and UIC for target toppic_gui -[ 1%] Automatic MOC and UIC for target topdiff_gui /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/toppic_gui_autogen.dir/AutogenInfo.json release -AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topindex_gui_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include -/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/AutogenInfo.json release +AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topfd_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/onnxruntime -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu +[ 1%] Automatic MOC and UIC for target topmg_gui +/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/AutogenInfo.json release AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Parsing "SRC:/src/common/base/activation.hpp" +AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/toppic_gui_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" @@ -1924,6 +1959,7 @@ AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" +AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" @@ -1932,101 +1968,456 @@ AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" -AutoGen: Parsing "SRC:/src/console/topindex_argument.hpp" -AutoGen: Parsing "SRC:/src/console/topindex_process.hpp" -AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" -AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" -AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/var_ptm_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/console/topdiff_argument.hpp" +AutoGen: Parsing "SRC:/src/console/topdiff_process.hpp" +AutoGen: Parsing "SRC:/src/merge/feature_prsm.hpp" +AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" +AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topindex_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" +AutoGen: Parsing "SRC:/src/ms/env/exp_env.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" +AutoGen: Refreshing parse cache because it doesn't exist. +AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/msmap/ms_map.hpp" +AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row.hpp" +AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row_header.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" +AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/toppic_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu +AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topmg_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu +AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_list_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/precursor.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" +AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_fdr_groups.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" +AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" +AutoGen: Parsing "SRC:/src/common/util/logger.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" +AutoGen: Parsing "SRC:/src/gui/topfd/topfddialog.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" +AutoGen: Parsing "SRC:/src/gui/util/command.hpp" +AutoGen: Parsing "SRC:/src/gui/util/gui_message.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" +AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/seq/prot_candidate.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/seq/prot_score.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" +AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" +AutoGen: Parsing "SRC:/src/common/util/logger.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" +AutoGen: Parsing "SRC:/src/gui/topfd/topfd_gui.cpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" +AutoGen: Parsing "SRC:/src/gui/topfd/topfddialog.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" -AutoGen: Parsing "SRC:/src/console/topindex.cpp" -AutoGen: Parsing "SRC:/src/console/topindex_argument.cpp" -AutoGen: Parsing "SRC:/src/console/topindex_process.cpp" -AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" -AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" -AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/var_ptm_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" +AutoGen: Parsing "SRC:/src/console/topdiff.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" +AutoGen: Parsing "SRC:/src/console/topdiff_argument.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" +AutoGen: Parsing "SRC:/src/console/topdiff_process.cpp" +AutoGen: Parsing "SRC:/src/merge/feature_prsm.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" +AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.cpp" +AutoGen: Parsing "SRC:/src/console/topdiff_argument.hpp" +AutoGen: Parsing "SRC:/src/gui/topdiff/topdiffdialog.hpp" +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" +AutoGen: Parsing "SRC:/src/gui/util/command.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env.cpp" +AutoGen: Parsing "SRC:/src/gui/util/gui_message.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion.cpp" +AutoGen: Parsing "SRC:/src/gui/util/command.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" +AutoGen: Parsing "SRC:/src/ms/env/exp_env.cpp" +[ 1%] Automatic MOC and UIC for target topindex_gui +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" +AutoGen: Parsing "SRC:/src/gui/util/gui_message.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" +AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" +AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp", because it doesn't exist, from "SRC:/src/gui/topfd/topfddialog.hpp" +/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include --include /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/topfd/topfddialog.hpp +AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" +AutoGen: Parsing "SRC:/src/common/util/logger.cpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/msmap/ms_map.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_peak.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" +AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row.cpp" +AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row_header.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" +AutoGen: Parsing "SRC:/src/console/topdiff_argument.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" +AutoGen: Parsing "SRC:/src/gui/topdiff/topdiff_gui.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" +AutoGen: Parsing "SRC:/src/gui/topdiff/topdiffdialog.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" +AutoGen: Parsing "SRC:/src/gui/util/command.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" +AutoGen: Parsing "SRC:/src/gui/util/gui_message.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_list_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/precursor.cpp" +AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp", because it doesn't exist, from "SRC:/src/gui/topdiff/topdiffdialog.hpp" +/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include --include /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/topdiff/topdiffdialog.hpp +AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" +/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/AutogenInfo.json release +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" +AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_fdr_groups.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" @@ -2037,8 +2428,6 @@ AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" -AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topmg_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" @@ -2046,35 +2435,34 @@ AutoGen: Parsing "SRC:/src/seq/prot_candidate.cpp" AutoGen: Parsing "SRC:/src/seq/prot_score.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" -AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topindex_autogen/mocs_compilation.cpp" -AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topindex_autogen/deps" AutoGen: Parsing "SRC:/src/common/base/activation.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" +AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topdiff_autogen/mocs_compilation.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" +AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topdiff_autogen/deps" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" -AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" @@ -2091,1460 +2479,1453 @@ AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" -AutoGen: Parsing "SRC:/src/console/topdiff_argument.hpp" -AutoGen: Parsing "SRC:/src/console/topdiff_process.hpp" -AutoGen: Parsing "SRC:/src/merge/feature_prsm.hpp" -AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" -AutoGen: Parsing "SRC:/src/ms/env/exp_env.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" -AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topfd_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/onnxruntime -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing "SRC:/src/console/topfd_argument.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" +AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topdiff_autogen.dir/ParseCache.txt" +AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" -AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topindex_autogen.dir/ParseCache.txt" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" +AutoGen: Parsing "SRC:/src/ms/env/exp_env.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" -AutoGen: Refreshing parse cache because it doesn't exist. +AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" -AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topindex_autogen.dir/AutogenUsed.txt" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" +AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topdiff_autogen.dir/AutogenUsed.txt" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" +AutoGen: Parsing "SRC:/src/ms/msmap/ms_map.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation.hpp" -AutoGen: Parsing "SRC:/src/gui/topfd/topfddialog.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" +AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_peak.hpp" +AutoGen: Parsing "SRC:/src/console/console_util.hpp" +AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row.hpp" +AutoGen: Parsing "SRC:/src/console/toppic_argument.hpp" +AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row_header.hpp" +AutoGen: Parsing "SRC:/src/gui/toppic/toppicwindow.hpp" +AutoGen: Parsing "SRC:/src/ms/mzml/mzml_ms_group.hpp" +AutoGen: Parsing "SRC:/src/ms/mzml/mzml_ms_group_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/mzml/mzml_ms_json_writer.hpp" AutoGen: Parsing "SRC:/src/gui/util/command.hpp" +AutoGen: Parsing "SRC:/src/ms/mzml/mzml_profile.hpp" AutoGen: Parsing "SRC:/src/gui/util/gui_message.hpp" -AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" +AutoGen: Parsing "SRC:/src/ms/mzml/pw_ms_reader.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_list_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/precursor.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" +AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" -AutoGen: Parsing "SRC:/src/ms/msmap/ms_map.hpp" +AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" +AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_data.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion.hpp" +AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_data_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" -AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_peak.hpp" +AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_ms1_process.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" +AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_ms2_process.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" +AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_prec_win.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" +AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_single_sp.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/co_table.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/dp.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" -AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row.hpp" -AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row_header.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/dp_assign.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.hpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/env/ms_map_env.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/env/ms_map_env_util.hpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/env/seed_env.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/env/seed_env_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/env_coll/env_coll.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/env_coll/env_coll_assign.hpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/env_coll/env_coll_detect.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" -AutoGen: Parsing "SRC:/src/gui/topfd/topfd_gui.cpp" -AutoGen: Parsing "SRC:/src/gui/topfd/topfddialog.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_list_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/precursor.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" -AutoGen: Parsing "SRC:/src/gui/util/command.cpp" -AutoGen: Parsing "SRC:/src/gui/util/gui_message.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" -AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.cpp" -AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp", because it doesn't exist, from "SRC:/src/gui/topfd/topfddialog.hpp" -/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include --include /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/topfd/topfddialog.hpp -AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" -AutoGen: Refreshing parse cache because it doesn't exist. -AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" -AutoGen: Parsing "SRC:/src/common/util/logger.hpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" -AutoGen: Parsing "SRC:/src/console/console_util.hpp" -AutoGen: Parsing "SRC:/src/console/toppic_argument.hpp" -AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/toppic_gui_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include -AutoGen: Parsing "SRC:/src/console/toppic_process.hpp" -AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" -AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp" -AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" -AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" -AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" -AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include -AutoGen: Parsing "SRC:/src/filter/mng/var_ptm_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" -AutoGen: Parsing "SRC:/src/filter/varptm/var_ptm_filter.hpp" -AutoGen: Parsing "SRC:/src/filter/varptm/var_ptm_filter_processor.hpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/timestamp -AutoGen: Parsing "SRC:/src/ms/env/exp_env.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/para/sp_para.hpp" -AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_fdr_groups.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" -AutoGen: Parsing "SRC:/src/seq/alter.hpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" -AutoGen: Parsing "SRC:/src/seq/break_point.hpp" -AutoGen: Parsing "SRC:/src/seq/db_block.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" -AutoGen: Parsing "SRC:/src/seq/prot_candidate.hpp" -AutoGen: Parsing "SRC:/src/seq/prot_score.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/env_coll/env_coll_util.hpp" +AutoGen: Parsing "SRC:/src/console/console_util.cpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/env_coll/env_coll_writer.hpp" +AutoGen: Parsing "SRC:/src/console/toppic_argument.cpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/env_set/env_set.hpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/env_set/env_set_util.hpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/env_set/xic.hpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/env_set/xic_util.hpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/para/ecscore_para.hpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/score/comp_env_cnn_score.hpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/score/component_score.hpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/score/ecscore.hpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/score/ecscore_writer.hpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/score/onnx_ecscore.hpp" +AutoGen: Parsing "SRC:/src/topfd/envcnn/onnx_env_cnn.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" +AutoGen: Parsing "SRC:/src/gui/toppic/toppic_gui.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" +AutoGen: Parsing "SRC:/src/gui/toppic/toppicwindow.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" -AutoGen: Parsing "SRC:/src/ms/msmap/ms_map.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" -AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_peak.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/timestamp +AutoGen: Parsing "SRC:/src/common/util/logger.cpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" +AutoGen: Parsing "SRC:/src/gui/util/command.cpp" +AutoGen: Parsing "SRC:/src/gui/util/gui_message.cpp" +AutoGen: Parsing "SRC:/src/console/topfd.cpp" +AutoGen: Parsing "SRC:/src/console/topfd_argument.cpp" +AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp", because it doesn't exist, from "SRC:/src/gui/toppic/toppicwindow.hpp" +/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include --include /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/toppic/toppicwindow.hpp +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" +AutoGen: Parsing "SRC:/src/ms/env/exp_env.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" +AutoGen: Refreshing parse cache because it doesn't exist. +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" +AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/msmap/ms_map.cpp" +AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row.cpp" +AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row_header.cpp" +AutoGen: Parsing "SRC:/src/ms/mzml/mzml_ms_group.cpp" +AutoGen: Parsing "SRC:/src/ms/mzml/mzml_ms_group_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/mzml/mzml_ms_json_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/mzml/mzml_profile.cpp" +AutoGen: Parsing "SRC:/src/ms/mzml/pw_ms_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_list_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/precursor.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" +AutoGen: Parsing "SRC:/src/para/sp_para.cpp" +AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.cpp" +AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.cpp" +AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_data.cpp" +AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_data_util.cpp" +AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_ms1_process.cpp" +AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_ms2_process.cpp" +AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_prec_win.cpp" +AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_single_sp.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/co_table.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/dp.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/dp_assign.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.cpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/env/ms_map_env.cpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/env/ms_map_env_util.cpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/env/seed_env.cpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/env/seed_env_util.cpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/env_coll/env_coll.cpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/env_coll/env_coll_assign.cpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/env_coll/env_coll_detect.cpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/env_coll/env_coll_util.cpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/env_coll/env_coll_writer.cpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/env_set/env_set.cpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/env_set/env_set_util.cpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/env_set/xic.cpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/env_set/xic_util.cpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/para/ecscore_para.cpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/score/comp_env_cnn_score.cpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/score/component_score.cpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/score/ecscore.cpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/score/ecscore_writer.cpp" +AutoGen: Parsing "SRC:/src/topfd/ecscore/score/onnx_ecscore.cpp" +AutoGen: Parsing "SRC:/src/topfd/envcnn/onnx_env_cnn.cpp" +AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topfd_autogen/mocs_compilation.cpp" +AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topfd_autogen/deps" +AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topfd_autogen.dir/ParseCache.txt" +AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topfd_autogen.dir/AutogenUsed.txt" +make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' +AutoGen: Refreshing parse cache because it doesn't exist. +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/timestamp AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" -AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" -AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row_header.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" +AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topindex_gui_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/console_util.hpp" +AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/console/topmg_argument.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/console/topmg_process.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/filter/mng/var_ptm_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/filter/varptm/var_ptm_filter.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/filter/varptm/var_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/env.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" +AutoGen: Parsing "SRC:/src/console/console_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" +AutoGen: Parsing "SRC:/src/console/toppic_argument.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/env/exp_env.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" +AutoGen: Parsing "SRC:/src/console/toppic_process.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/common/util/logger.hpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader_util.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" +AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" +AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/console/topindex_argument.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" +AutoGen: Parsing "SRC:/src/console/topindex_process.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" +AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" +AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" +AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" +AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/msmap/ms_map.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_peak.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row.hpp" AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row_header.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/var_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" +AutoGen: Parsing "SRC:/src/para/sp_para.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" +AutoGen: Parsing "SRC:/src/seq/alter.hpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader.hpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" +AutoGen: Parsing "SRC:/src/seq/break_point.hpp" +AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_list_util.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_list_util.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/precursor.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/var_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/precursor.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" +AutoGen: Parsing "SRC:/src/seq/prot_candidate.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" +AutoGen: Parsing "SRC:/src/seq/prot_score.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" +AutoGen: Parsing "SRC:/src/filter/varptm/var_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" +AutoGen: Parsing "SRC:/src/filter/varptm/var_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr_groups.hpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" -AutoGen: Parsing "SRC:/src/common/util/logger.cpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" -AutoGen: Parsing "SRC:/src/para/sp_para.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.hpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.hpp" AutoGen: Parsing "SRC:/src/search/graph/dist.hpp" +AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_anno.hpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/exp_env.hpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_graph.hpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_graph_reader.hpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/search/graph/spec_graph.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.hpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_align_processor.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.hpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" +AutoGen: Parsing "SRC:/src/console/topindex.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" +AutoGen: Parsing "SRC:/src/console/topindex_argument.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" +AutoGen: Parsing "SRC:/src/console/topindex_process.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" +AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" +AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" AutoGen: Parsing "SRC:/src/seq/prot_candidate.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" AutoGen: Parsing "SRC:/src/seq/prot_score.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/var_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.hpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" +AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" +AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" +AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" -AutoGen: Parsing "SRC:/src/console/topdiff.cpp" +AutoGen: Parsing "SRC:/src/seq/db_block.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" -AutoGen: Parsing "SRC:/src/console/topdiff_argument.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" -AutoGen: Parsing "SRC:/src/console/topdiff_process.cpp" +AutoGen: Parsing "SRC:/src/seq/prot_candidate.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" +AutoGen: Parsing "SRC:/src/seq/prot_score.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_fdr_groups.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" -AutoGen: Parsing "SRC:/src/merge/feature_prsm.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" +AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topindex_autogen/mocs_compilation.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" +AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topindex_autogen/deps" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" +AutoGen: Parsing "SRC:/src/ms/msmap/ms_map.hpp" +AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" +AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row_header.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" -AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" +AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topindex_autogen.dir/ParseCache.txt" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" +AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topindex_autogen.dir/AutogenUsed.txt" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.hpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.hpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.hpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_slow_match.hpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/path_type.hpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/ps_align.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env.cpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/ptm_search_mng.hpp" -AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.hpp" -AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.hpp" -AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_slow_filter.hpp" -AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_slow_match.hpp" -AutoGen: Parsing "SRC:/src/search/varptmsearch/var_ptm_align.hpp" -AutoGen: Parsing "SRC:/src/search/varptmsearch/var_ptm_search_mng.hpp" -AutoGen: Parsing "SRC:/src/search/varptmsearch/var_ptm_search_processor.hpp" -AutoGen: Parsing "SRC:/src/search/varptmsearch/var_ptm_slow_match.hpp" -AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_match.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" -AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.hpp" -AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.hpp" -AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.hpp" -AutoGen: Parsing "SRC:/src/seq/alter.hpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" -AutoGen: Parsing "SRC:/src/seq/break_point.hpp" -AutoGen: Parsing "SRC:/src/seq/db_block.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" -AutoGen: Parsing "SRC:/src/seq/prot_candidate.hpp" -AutoGen: Parsing "SRC:/src/seq/prot_score.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" -AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" -AutoGen: Refreshing parse cache because it doesn't exist. -AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topdiff_gui_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include -AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" -AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" -AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.hpp" -AutoGen: Parsing "SRC:/src/ms/env/exp_env.cpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.hpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.hpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation.hpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_list_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/precursor.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" +AutoGen: Parsing "SRC:/src/console/console_util.cpp" +AutoGen: Parsing "SRC:/src/console/topmg.cpp" +AutoGen: Parsing "SRC:/src/console/topmg_argument.cpp" +AutoGen: Parsing "SRC:/src/console/topmg_process.cpp" +[ 1%] Built target topdiff_autogen +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp" +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.cpp" +AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" +AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" +AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/var_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" -AutoGen: Parsing "SRC:/src/console/console_util.cpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" -AutoGen: Parsing "SRC:/src/console/topmg.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" -AutoGen: Parsing "SRC:/src/console/topmg_argument.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" -AutoGen: Parsing "SRC:/src/console/topfd_argument.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" -AutoGen: Parsing "SRC:/src/ms/env/exp_env.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/ms/msmap/ms_map.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row_header.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" -AutoGen: Parsing 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"SRC:/src/ms/feature/spec_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/msmap/ms_map.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row_header.hpp" -AutoGen: Parsing "SRC:/src/ms/mzml/mzml_ms_group.hpp" -AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" -AutoGen: Parsing "SRC:/src/ms/mzml/mzml_ms_group_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/mzml/mzml_ms_json_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" -AutoGen: Parsing 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"SRC:/src/common/base/mod_util.cpp" -AutoGen: Parsing "SRC:/src/topfd/ecscore/env_set/xic.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" -AutoGen: Parsing "SRC:/src/topfd/ecscore/env_set/xic_util.hpp" -AutoGen: Parsing "SRC:/src/topfd/ecscore/para/ecscore_para.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" -AutoGen: Parsing "SRC:/src/topfd/ecscore/score/comp_env_cnn_score.hpp" -AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" -AutoGen: Parsing "SRC:/src/topfd/ecscore/score/component_score.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" -AutoGen: Parsing "SRC:/src/topfd/ecscore/score/ecscore.hpp" -AutoGen: Parsing "SRC:/src/topfd/ecscore/score/ecscore_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/topfd/ecscore/score/onnx_ecscore.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" -AutoGen: Parsing "SRC:/src/topfd/envcnn/onnx_env_cnn.hpp" +AutoGen: Parsing "SRC:/src/filter/varptm/var_ptm_filter.cpp" +AutoGen: Parsing "SRC:/src/console/console_util.hpp" +AutoGen: Parsing "SRC:/src/console/topmg_argument.hpp" +AutoGen: Parsing "SRC:/src/gui/topmg/topmgwindow.hpp" +AutoGen: Parsing "SRC:/src/gui/util/command.hpp" +AutoGen: Parsing "SRC:/src/filter/varptm/var_ptm_filter_processor.cpp" +AutoGen: Parsing "SRC:/src/gui/util/gui_message.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" +make -f CMakeFiles/topdiff.dir/build.make CMakeFiles/topdiff.dir/depend AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" -AutoGen: Parsing "SRC:/src/seq/alter.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/var_ptm_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/seq/break_point.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" -AutoGen: Parsing "SRC:/src/seq/db_block.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue.cpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" -AutoGen: Parsing "SRC:/src/seq/prot_candidate.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" -AutoGen: Parsing "SRC:/src/seq/prot_score.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" -AutoGen: Parsing "SRC:/src/common/util/logger.cpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" -AutoGen: Parsing 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Parsing "SRC:/src/console/topfd.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" -AutoGen: Parsing "SRC:/src/console/topfd_argument.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" +AutoGen: 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"SRC:/src/gui/topmg/topmgwindow.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" -AutoGen: Parsing "SRC:/src/console/toppic_process.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" -AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" -AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/msmap/ms_map.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_peak.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row.cpp" AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row_header.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/gui/util/command.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" +AutoGen: Parsing "SRC:/src/gui/util/gui_message.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/var_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" +AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp", because it doesn't exist, from "SRC:/src/gui/topmg/topmgwindow.hpp" +/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include --include /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/topmg/topmgwindow.hpp AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" +AutoGen: Parsing "SRC:/src/para/sp_para.hpp" +AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader_util.cpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" -AutoGen: Parsing "SRC:/src/filter/varptm/var_ptm_filter.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_fdr_groups.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_list_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" -AutoGen: Parsing "SRC:/src/filter/varptm/var_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/ms/spec/precursor.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/timestamp AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_header.hpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.hpp" +AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr_groups.cpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.hpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_slow_match.hpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/path_type.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/ps_align.hpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/ptm_search_mng.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.hpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.hpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_slow_filter.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_slow_match.hpp" +AutoGen: Parsing "SRC:/src/search/varptmsearch/var_ptm_align.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" +AutoGen: Parsing "SRC:/src/search/varptmsearch/var_ptm_search_mng.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" -AutoGen: Parsing "SRC:/src/ms/env/exp_env.cpp" +AutoGen: Parsing "SRC:/src/search/varptmsearch/var_ptm_search_processor.hpp" +AutoGen: Parsing "SRC:/src/search/varptmsearch/var_ptm_slow_match.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_match.hpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.hpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.hpp" +AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" +AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" +AutoGen: Parsing "SRC:/src/seq/db_block.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" +AutoGen: Parsing "SRC:/src/seq/prot_candidate.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" +AutoGen: Parsing "SRC:/src/seq/prot_score.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" +AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" +AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" +AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp" +AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" +AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.hpp" +AutoGen: Parsing "SRC:/src/search/graph/dist.cpp" +AutoGen: Parsing "SRC:/src/search/graph/proteo_anno.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.hpp" +AutoGen: Parsing "SRC:/src/search/graph/proteo_graph.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.hpp" +AutoGen: Parsing "SRC:/src/search/graph/proteo_graph_reader.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" +AutoGen: Parsing "SRC:/src/search/graph/spec_graph.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" +AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.cpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_align_processor.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" +AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.cpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.cpp" +AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" +AutoGen: Parsing "SRC:/src/seq/alter.cpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" +AutoGen: Parsing "SRC:/src/seq/break_point.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" +AutoGen: Parsing "SRC:/src/seq/db_block.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue.cpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" +AutoGen: Parsing "SRC:/src/seq/prot_candidate.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" +AutoGen: Parsing "SRC:/src/seq/prot_score.cpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" +AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" +AutoGen: Parsing "SRC:/src/console/console_util.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" +AutoGen: Parsing "SRC:/src/console/toppic.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" +AutoGen: Parsing "SRC:/src/console/toppic_argument.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/topindex_argument.hpp" AutoGen: Parsing "SRC:/src/gui/topindex/topindexdialog.hpp" +AutoGen: Parsing "SRC:/src/console/toppic_process.cpp" AutoGen: Parsing "SRC:/src/gui/util/command.hpp" AutoGen: Parsing "SRC:/src/gui/util/gui_message.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" +make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' +AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" +cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topdiff.dir/DependInfo.cmake "--color=" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" +AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" +AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" +AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" +AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/var_ptm_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp" +AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" +AutoGen: Parsing "SRC:/src/filter/varptm/var_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" +AutoGen: Parsing "SRC:/src/filter/varptm/var_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" +AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" +AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/console/topindex_argument.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" +AutoGen: Parsing "SRC:/src/ms/env/exp_env.cpp" AutoGen: Parsing "SRC:/src/gui/topindex/topindex_gui.cpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/gui/topindex/topindexdialog.cpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" -AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/search/graph/dist.cpp" -AutoGen: Parsing "SRC:/src/search/graph/proteo_anno.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/search/graph/proteo_graph.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/search/graph/proteo_graph_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" -AutoGen: Parsing "SRC:/src/search/graph/spec_graph.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" -AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/msmap/ms_map.cpp" -AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row.cpp" -AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row_header.cpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_align_processor.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" +AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" +AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" AutoGen: Parsing "SRC:/src/gui/util/command.cpp" AutoGen: Parsing "SRC:/src/gui/util/gui_message.cpp" -AutoGen: Parsing "SRC:/src/seq/alter.cpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" +AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topmg_autogen/mocs_compilation.cpp" AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp", because it doesn't exist, from "SRC:/src/gui/topindex/topindexdialog.hpp" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include --include /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/topindex/topindexdialog.hpp -AutoGen: Parsing "SRC:/src/seq/break_point.cpp" -AutoGen: Parsing "SRC:/src/seq/db_block.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" -AutoGen: Parsing "SRC:/src/seq/prot_candidate.cpp" -AutoGen: Parsing "SRC:/src/seq/prot_score.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" -AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topdiff_autogen.dir/ParseCache.txt" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" -AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topdiff_autogen.dir/AutogenUsed.txt" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" +AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topmg_autogen/deps" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" -AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_list_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" +AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topmg_autogen.dir/ParseCache.txt" +AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topmg_autogen.dir/AutogenUsed.txt" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp" AutoGen: Parsing "SRC:/src/ms/msmap/ms_map.cpp" AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_peak.cpp" AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row.cpp" AutoGen: Parsing "SRC:/src/ms/msmap/ms_map_row_header.cpp" -AutoGen: Parsing "SRC:/src/ms/mzml/mzml_ms_group.cpp" -AutoGen: Parsing "SRC:/src/ms/mzml/mzml_ms_group_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/mzml/mzml_ms_json_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/mzml/mzml_profile.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/precursor.cpp" -AutoGen: Parsing "SRC:/src/ms/mzml/pw_ms_reader.cpp" -AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" @@ -3553,109 +3934,44 @@ AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_reader_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_list_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/precursor.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" -AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" -AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.cpp" -AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" -AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_data.cpp" -AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_data_util.cpp" -AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_ms1_process.cpp" -AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_ms2_process.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" -AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_prec_win.cpp" -AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.cpp" -AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_single_sp.cpp" -AutoGen: Parsing "SRC:/src/topfd/dp/co_table.cpp" -AutoGen: Parsing "SRC:/src/topfd/dp/dp.cpp" -AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.cpp" -AutoGen: Parsing "SRC:/src/topfd/dp/dp_assign.cpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" -AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.cpp" -AutoGen: Parsing "SRC:/src/topfd/dp/vertex.cpp" -AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.cpp" -AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.cpp" -AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.cpp" -AutoGen: Parsing "SRC:/src/topfd/ecscore/env/ms_map_env.cpp" -AutoGen: Parsing "SRC:/src/topfd/ecscore/env/ms_map_env_util.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" -AutoGen: Parsing "SRC:/src/topfd/ecscore/env/seed_env.cpp" -AutoGen: Parsing "SRC:/src/topfd/ecscore/env/seed_env_util.cpp" -AutoGen: Parsing "SRC:/src/topfd/ecscore/env_coll/env_coll.cpp" -AutoGen: Parsing "SRC:/src/topfd/ecscore/env_coll/env_coll_assign.cpp" -AutoGen: Parsing "SRC:/src/para/sp_para.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" -AutoGen: Parsing "SRC:/src/topfd/ecscore/env_coll/env_coll_detect.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" -AutoGen: Parsing "SRC:/src/topfd/ecscore/env_coll/env_coll_util.cpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" -AutoGen: Parsing "SRC:/src/topfd/ecscore/env_coll/env_coll_writer.cpp" -AutoGen: Parsing "SRC:/src/topfd/ecscore/env_set/env_set.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" -AutoGen: Parsing "SRC:/src/topfd/ecscore/env_set/env_set_util.cpp" -AutoGen: Parsing "SRC:/src/topfd/ecscore/env_set/xic.cpp" -AutoGen: Parsing "SRC:/src/topfd/ecscore/env_set/xic_util.cpp" -AutoGen: Parsing "SRC:/src/topfd/ecscore/para/ecscore_para.cpp" -AutoGen: Parsing "SRC:/src/topfd/ecscore/score/comp_env_cnn_score.cpp" -AutoGen: Parsing "SRC:/src/topfd/ecscore/score/component_score.cpp" -AutoGen: Parsing "SRC:/src/topfd/ecscore/score/ecscore.cpp" -AutoGen: Parsing "SRC:/src/topfd/ecscore/score/ecscore_writer.cpp" -AutoGen: Parsing "SRC:/src/topfd/ecscore/score/onnx_ecscore.cpp" -AutoGen: Parsing "SRC:/src/topfd/envcnn/onnx_env_cnn.cpp" -AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topfd_autogen/mocs_compilation.cpp" -AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topfd_autogen/deps" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" -AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" -AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" -AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topmg_autogen/mocs_compilation.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" -AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topmg_autogen/deps" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr_groups.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" -AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topmg_autogen.dir/ParseCache.txt" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" -AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topmg_autogen.dir/AutogenUsed.txt" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/timestamp AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" @@ -3665,6 +3981,7 @@ AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/timestamp AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" @@ -3674,6 +3991,7 @@ AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" +make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.cpp" @@ -3707,13 +4025,10 @@ AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/timestamp -AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topfd_autogen.dir/ParseCache.txt" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/seq/prot_candidate.cpp" AutoGen: Parsing "SRC:/src/seq/prot_score.cpp" -AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topfd_autogen.dir/AutogenUsed.txt" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" @@ -3725,7 +4040,6 @@ AutoGen: Parsing "SRC:/src/stat/local/local_mng.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.cpp" -make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.cpp" @@ -3740,427 +4054,192 @@ AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/timestamp AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" -AutoGen: Parsing "SRC:/src/common/util/logger.hpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/toppic_autogen/mocs_compilation.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" -AutoGen: Parsing "SRC:/src/console/console_util.hpp" -AutoGen: Parsing "SRC:/src/console/toppic_argument.hpp" -AutoGen: Parsing "SRC:/src/gui/toppic/toppicwindow.hpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/toppic_autogen/deps" -AutoGen: Parsing "SRC:/src/gui/util/command.hpp" -AutoGen: Parsing "SRC:/src/gui/util/gui_message.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/logger.cpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" -AutoGen: Parsing "SRC:/src/console/console_util.cpp" -AutoGen: Parsing "SRC:/src/console/toppic_argument.cpp" -AutoGen: Parsing "SRC:/src/gui/toppic/toppic_gui.cpp" -AutoGen: Parsing "SRC:/src/gui/toppic/toppicwindow.cpp" AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/toppic_autogen.dir/ParseCache.txt" -AutoGen: Parsing "SRC:/src/common/base/activation.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/toppic_autogen.dir/AutogenUsed.txt" -AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" -AutoGen: Parsing "SRC:/src/common/util/logger.hpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" -AutoGen: Parsing "SRC:/src/console/topdiff_argument.hpp" -AutoGen: Parsing "SRC:/src/gui/topdiff/topdiffdialog.hpp" -AutoGen: Parsing "SRC:/src/gui/util/command.hpp" -AutoGen: Parsing "SRC:/src/gui/util/gui_message.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion.cpp" /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/timestamp -AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" -AutoGen: Parsing "SRC:/src/common/util/logger.cpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue.hpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" -AutoGen: Parsing "SRC:/src/console/topdiff_argument.cpp" -AutoGen: Parsing "SRC:/src/common/util/logger.hpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" -AutoGen: Parsing "SRC:/src/gui/topdiff/topdiff_gui.cpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" -AutoGen: Parsing "SRC:/src/gui/topdiff/topdiffdialog.cpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" -AutoGen: Parsing "SRC:/src/console/console_util.hpp" -AutoGen: Parsing "SRC:/src/console/topmg_argument.hpp" -AutoGen: Parsing "SRC:/src/gui/topmg/topmgwindow.hpp" -AutoGen: Parsing "SRC:/src/gui/util/command.hpp" -AutoGen: Parsing "SRC:/src/gui/util/gui_message.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" -AutoGen: Parsing "SRC:/src/gui/util/command.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" -AutoGen: Parsing "SRC:/src/gui/util/gui_message.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" -AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp", because it doesn't exist, from "SRC:/src/gui/topdiff/topdiffdialog.hpp" -/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include --include /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/topdiff/topdiffdialog.hpp -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/logger.cpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" -AutoGen: Parsing "SRC:/src/console/console_util.cpp" -AutoGen: Parsing "SRC:/src/console/topmg_argument.cpp" -AutoGen: Parsing "SRC:/src/gui/topmg/topmg_gui.cpp" -AutoGen: Parsing "SRC:/src/gui/topmg/topmgwindow.cpp" -AutoGen: Parsing "SRC:/src/gui/util/command.cpp" -AutoGen: Parsing "SRC:/src/gui/util/gui_message.cpp" -AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp", because it doesn't exist, from "SRC:/src/gui/topmg/topmgwindow.hpp" -/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include --include /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/topmg/topmgwindow.hpp -AutoGen: Parsing "SRC:/src/gui/util/command.cpp" -AutoGen: Parsing "SRC:/src/gui/util/gui_message.cpp" -AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp", because it doesn't exist, from "SRC:/src/gui/toppic/toppicwindow.hpp" -/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -I/usr/include --include /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/toppic/toppicwindow.hpp -[ 1%] Built target topindex_autogen -make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -make -f CMakeFiles/topindex.dir/build.make CMakeFiles/topindex.dir/depend -make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topindex.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -[ 1%] Built target topdiff_autogen -make -f CMakeFiles/topdiff.dir/build.make CMakeFiles/topdiff.dir/depend -make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topdiff.dir/DependInfo.cmake "--color=" -[ 1%] Built target topmg_autogen -make -f CMakeFiles/topmg.dir/build.make CMakeFiles/topmg.dir/depend -Dependencies file "topindex_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topindex.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target topindex -make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topmg.dir/DependInfo.cmake "--color=" -[ 1%] Built target toppic_autogen -make -f CMakeFiles/toppic.dir/build.make CMakeFiles/toppic.dir/depend Dependencies file "topdiff_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topdiff.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target topdiff [ 1%] Built target topfd_autogen make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -make -f CMakeFiles/topdiff.dir/build.make CMakeFiles/topdiff.dir/build +Consolidate compiler generated dependencies of target topdiff make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -make -f CMakeFiles/topindex.dir/build.make CMakeFiles/topindex.dir/build -make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/toppic.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/topdiff.dir/build.make CMakeFiles/topdiff.dir/build make -f CMakeFiles/topfd.dir/build.make CMakeFiles/topfd.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topfd.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -Dependencies file "toppic_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/toppic.dir/compiler_depend.internal". 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-I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/topindex_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topindex.dir/topindex_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topindex.dir/topindex_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/mocs_compilation.cpp +make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' +[ 1%] Built target topindex_autogen +make -f CMakeFiles/topindex.dir/build.make CMakeFiles/topindex.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -[ 2%] Building CXX object CMakeFiles/topdiff.dir/topdiff_autogen/mocs_compilation.cpp.o -Dependencies file "topmg_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topmg.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target topmg -Consolidate compiler generated dependencies of target topfd +[ 1%] Building CXX object CMakeFiles/topdiff.dir/src/console/topdiff.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu 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topfd make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' make -f CMakeFiles/topfd.dir/build.make CMakeFiles/topfd.dir/build -make -f CMakeFiles/topmg.dir/build.make CMakeFiles/topmg.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' +Dependencies file "topindex_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles/topindex.dir/compiler_depend.internal". +[ 1%] Building CXX object CMakeFiles/topdiff.dir/src/console/topdiff_process.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 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CMakeFiles/topindex.dir/src/console/topindex_process.cpp.o.d -o CMakeFiles/topindex.dir/src/console/topindex_process.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/console/topindex_process.cpp -[ 3%] Building CXX object CMakeFiles/toppic.dir/src/console/toppic.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/console/topfd.cpp.o -MF CMakeFiles/topfd.dir/src/console/topfd.cpp.o.d -o CMakeFiles/topfd.dir/src/console/topfd.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/console/topfd.cpp -[ 3%] Building CXX object CMakeFiles/topmg.dir/src/console/topmg.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/console/topmg.cpp.o -MF CMakeFiles/topmg.dir/src/console/topmg.cpp.o.d -o CMakeFiles/topmg.dir/src/console/topmg.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/console/topmg.cpp -AutoMoc: Reading dependencies from "SRC:/obj-aarch64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp.d" -AutoUic: Generating "SRC:/obj-aarch64-linux-gnu/topindex_gui_autogen/include/gui/topindex/ui_topindexdialog.h", because it doesn't exist, from "SRC:/src/gui/topindex/topindexdialog.ui" -/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/include/gui/topindex/ui_topindexdialog.h /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/topindex/topindexdialog.ui -AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topindex_gui_autogen/mocs_compilation.cpp" -AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topindex_gui_autogen/deps" -AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/ParseCache.txt" -AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/AutogenUsed.txt" -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/timestamp -AutoMoc: Reading dependencies from "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp.d" -AutoUic: Generating "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/include/gui/topmg/ui_topmgwindow.h", because it doesn't exist, from "SRC:/src/gui/topmg/topmgwindow.ui" -/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include/gui/topmg/ui_topmgwindow.h /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/topmg/topmgwindow.ui -AutoMoc: Reading dependencies from "SRC:/obj-aarch64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp.d" -AutoUic: Generating "SRC:/obj-aarch64-linux-gnu/toppic_gui_autogen/include/gui/toppic/ui_toppicwindow.h", because it doesn't exist, from "SRC:/src/gui/toppic/toppicwindow.ui" -/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include/gui/toppic/ui_toppicwindow.h /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/toppic/toppicwindow.ui -AutoMoc: Reading dependencies from "SRC:/obj-aarch64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp.d" -AutoUic: Generating "SRC:/obj-aarch64-linux-gnu/topfd_gui_autogen/include/gui/topfd/ui_topfddialog.h", because it doesn't exist, from "SRC:/src/gui/topfd/topfddialog.ui" -/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/include/gui/topfd/ui_topfddialog.h /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/topfd/topfddialog.ui +[ 2%] Building CXX object CMakeFiles/topindex.dir/topindex_autogen/mocs_compilation.cpp.o +[ 2%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/activation_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/activation_base.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/activation_base.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/topindex_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topindex.dir/topindex_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topindex.dir/topindex_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/mocs_compilation.cpp AutoMoc: Reading dependencies from "SRC:/obj-aarch64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp.d" AutoUic: Generating "SRC:/obj-aarch64-linux-gnu/topdiff_gui_autogen/include/gui/topdiff/ui_topdiffdialog.h", because it doesn't exist, from "SRC:/src/gui/topdiff/topdiffdialog.ui" /usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include/gui/topdiff/ui_topdiffdialog.h /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/topdiff/topdiffdialog.ui -AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/mocs_compilation.cpp" -AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/deps" -AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/ParseCache.txt" -AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/AutogenUsed.txt" -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/timestamp -AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/toppic_gui_autogen/mocs_compilation.cpp" -AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/toppic_gui_autogen/deps" -AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/toppic_gui_autogen.dir/ParseCache.txt" -AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/toppic_gui_autogen.dir/AutogenUsed.txt" +AutoMoc: Reading dependencies from "SRC:/obj-aarch64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp.d" +AutoUic: Generating "SRC:/obj-aarch64-linux-gnu/topfd_gui_autogen/include/gui/topfd/ui_topfddialog.h", because it doesn't exist, from "SRC:/src/gui/topfd/topfddialog.ui" +/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/include/gui/topfd/ui_topfddialog.h /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/topfd/topfddialog.ui AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topdiff_gui_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topdiff_gui_autogen/deps" -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/timestamp AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/ParseCache.txt" -make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_gui_autogen/timestamp +AutoMoc: Reading dependencies from "SRC:/obj-aarch64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp.d" +[ 3%] Building CXX object CMakeFiles/topindex.dir/src/console/topindex.cpp.o +[ 3%] Building CXX object CMakeFiles/topfd.dir/src/console/topfd.cpp.o +AutoUic: Generating "SRC:/obj-aarch64-linux-gnu/toppic_gui_autogen/include/gui/toppic/ui_toppicwindow.h", because it doesn't exist, from "SRC:/src/gui/toppic/toppicwindow.ui" +/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include/gui/toppic/ui_toppicwindow.h /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/toppic/toppicwindow.ui +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/console/topfd.cpp.o -MF CMakeFiles/topfd.dir/src/console/topfd.cpp.o.d -o CMakeFiles/topfd.dir/src/console/topfd.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/console/topfd.cpp make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topfd_gui_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topfd_gui_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/AutogenUsed.txt" +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/console/topindex.cpp.o -MF CMakeFiles/topindex.dir/src/console/topindex.cpp.o.d -o CMakeFiles/topindex.dir/src/console/topindex.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/console/topindex.cpp /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/timestamp +AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/toppic_gui_autogen/mocs_compilation.cpp" +AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/toppic_gui_autogen/deps" +AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/toppic_gui_autogen.dir/ParseCache.txt" +AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/toppic_gui_autogen.dir/AutogenUsed.txt" +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/timestamp +[ 3%] Built target topdiff_gui_autogen +AutoMoc: Reading dependencies from "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp.d" +AutoUic: Generating "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/include/gui/topmg/ui_topmgwindow.h", because it doesn't exist, from "SRC:/src/gui/topmg/topmgwindow.ui" +/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include/gui/topmg/ui_topmgwindow.h /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/topmg/topmgwindow.ui make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -[ 3%] Built target topmg_gui_autogen -[ 3%] Built target topindex_gui_autogen make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -make -f CMakeFiles/topindex_gui.dir/build.make CMakeFiles/topindex_gui.dir/depend +AutoMoc: Reading dependencies from "SRC:/obj-aarch64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp.d" +AutoUic: Generating "SRC:/obj-aarch64-linux-gnu/topindex_gui_autogen/include/gui/topindex/ui_topindexdialog.h", because it doesn't exist, from "SRC:/src/gui/topindex/topindexdialog.ui" +/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/include/gui/topindex/ui_topindexdialog.h /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/topindex/topindexdialog.ui +[ 3%] Built target topfd_gui_autogen +AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/mocs_compilation.cpp" +AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/deps" +[ 3%] Building CXX object CMakeFiles/topindex.dir/src/console/topindex_argument.cpp.o +AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/ParseCache.txt" +AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/AutogenUsed.txt" +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include 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/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/timestamp +make -f CMakeFiles/toppic.dir/build.make CMakeFiles/toppic.dir/depend +AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topindex_gui_autogen/mocs_compilation.cpp" +AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topindex_gui_autogen/deps" [ 3%] Built target toppic_gui_autogen +AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/ParseCache.txt" +AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/AutogenUsed.txt" make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/timestamp +cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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CMakeFiles/topdiff.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/amino_acid.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/amino_acid.cpp +make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' +[ 3%] Built target topindex_gui_autogen +make -f CMakeFiles/topmg.dir/build.make CMakeFiles/topmg.dir/depend +[ 3%] Built target topmg_gui_autogen +make[3]: Entering directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' +cd /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1 /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu 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-I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/console/topdiff_process.cpp.o -MF CMakeFiles/topdiff.dir/src/console/topdiff_process.cpp.o.d -o CMakeFiles/topdiff.dir/src/console/topdiff_process.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/console/topdiff_process.cpp -[ 3%] Building CXX object CMakeFiles/topfd.dir/src/topfd/common/topfd_process.cpp.o +[ 3%] Building CXX object CMakeFiles/topmg.dir/src/console/topmg_process.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/console/console_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/console/console_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/console/console_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/console/console_util.cpp +[ 4%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/ion_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 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/build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/ion_type.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/common/topfd_process.cpp:22: /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.hpp:15: warning: header guard 'TOPPIC_MS_MZML_PW_MS_READER_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_MS_MZML_PW_MS_READER_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.hpp:16: note: 'TOPPIC_MZ_MZML_PW_MS_READER_HPP_' is defined here; did you mean 'TOPPIC_MS_MZML_PW_MS_READER_HPP_'? 16 | #define TOPPIC_MZ_MZML_PW_MS_READER_HPP_ -[ 3%] Building CXX object CMakeFiles/topdiff_gui.dir/src/console/topdiff_argument.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include 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/build/reproducible-path/toppic-1.7.10+cleaned1/src/console/topdiff_argument.cpp -[ 3%] Building CXX object CMakeFiles/topfd.dir/src/topfd/deconv/deconv_data.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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CMakeFiles/toppic_gui.dir/src/console/toppic_argument.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/console/toppic_argument.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/console/toppic_argument.cpp +[ 4%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/ion_type_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/mod.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/mod.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/mod.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/mod.cpp In file included from /usr/include/c++/15/bits/stl_algobase.h:64, from /usr/include/c++/15/string:53, from /usr/include/c++/15/bits/locale_classes.h:42, @@ -4248,76 +4323,104 @@ /usr/include/c++/15/bits/stl_pair.h:1164:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1164 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ -In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/console/toppic_process.cpp:29: -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 4%] Building CXX object CMakeFiles/toppic.dir/src/common/base/activation.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/activation.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/activation.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/activation.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/activation.cpp -[ 4%] Building CXX object CMakeFiles/topmg.dir/src/console/topmg_process.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/console/topmg_process.cpp.o -MF CMakeFiles/topmg.dir/src/console/topmg_process.cpp.o.d -o CMakeFiles/topmg.dir/src/console/topmg_process.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/console/topmg_process.cpp -In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/console/topmg_process.cpp:26: -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 4%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/activation.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/activation.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/activation.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/activation.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/activation.cpp -[ 4%] Building CXX object CMakeFiles/topindex.dir/src/common/base/amino_acid.cpp.o -/usr/bin/c++ 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-I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/gui/topmg/topmg_gui.cpp.o -MF CMakeFiles/topmg_gui.dir/src/gui/topmg/topmg_gui.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/gui/topmg/topmg_gui.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/topmg/topmg_gui.cpp -[ 4%] Building CXX object CMakeFiles/topfd.dir/src/topfd/deconv/deconv_data_util.cpp.o -/usr/bin/c++ -DONNX_ML=1 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-I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/amino_acid_base.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/amino_acid_base.cpp -[ 4%] Building CXX object CMakeFiles/topindex_gui.dir/src/gui/topindex/topindexdialog.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 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8%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/neutral_loss.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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Building CXX object CMakeFiles/toppic_gui.dir/src/gui/toppic/toppicwindow.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 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CXX object CMakeFiles/topfd_gui.dir/src/common/base/activation_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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'TOPPIC_MS_MZML_PW_MS_READER_HPP_'? + 16 | #define TOPPIC_MZ_MZML_PW_MS_READER_HPP_ +[ 11%] Building CXX object CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/topdiff/topdiff_gui.cpp +[ 11%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/ptm_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui 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-D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/neutral_loss_base.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/neutral_loss_base.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/neutral_loss_base.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/neutral_loss_base.cpp +[ 11%] Building CXX object CMakeFiles/topmg.dir/src/common/base/amino_acid.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets 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24%] Building CXX object CMakeFiles/toppic.dir/src/common/base/trunc.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD 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-[ 27%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/ptm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 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CMakeFiles/topdiff.dir/src/common/xml/xml_dom_parser.cpp.o +[ 29%] Building CXX object CMakeFiles/topdiff.dir/src/common/xml/xml_dom_parser.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 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/build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_writer.cpp +[ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/support_peak_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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CMakeFiles/topfd_gui.dir/src/common/util/logger.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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CMakeFiles/topdiff.dir/src/common/xml/xml_dom_util.cpp.o -[ 32%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/time_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 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/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.cpp +In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.cpp:15: +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 33%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/trunc_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 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-D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/toppic.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/toppic.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/str_util.cpp +[ 33%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/mem_check.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui 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CMakeFiles/topdiff_gui.dir/src/common/base/support_peak_type_base.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/support_peak_type_base.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/support_peak_type_base.cpp +[ 34%] Building CXX object CMakeFiles/topdiff.dir/src/seq/break_point.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/break_point.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.cpp:15: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.cpp:15: -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 36%] Building CXX object CMakeFiles/toppic.dir/src/common/util/logger.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 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object CMakeFiles/topdiff.dir/src/seq/fasta_index_reader.cpp.o +[ 34%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/trunc_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 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-I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/trunc.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/trunc.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/trunc.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/trunc.cpp +[ 34%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/str_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 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CMakeFiles/topfd_gui.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/str_util.cpp +[ 34%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/trunc_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/trunc_base.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/trunc_base.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/trunc_base.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/trunc_base.cpp +[ 34%] Building CXX object CMakeFiles/toppic.dir/src/common/util/time_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/toppic.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/toppic.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/time_util.cpp +[ 34%] Building CXX object CMakeFiles/toppic.dir/src/common/xml/xml_dom_document.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/toppic.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/toppic.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_document.cpp +[ 34%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_index_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.cpp -[ 36%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/residue_freq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/residue_freq.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/residue_freq.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/residue_freq.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/residue_freq.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.cpp:20: @@ -5105,42 +5090,44 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 36%] Building CXX object CMakeFiles/topmg.dir/src/common/xml/xml_dom_parser.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topmg.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topmg.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_parser.cpp -[ 36%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/mem_check.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/mem_check.cpp -[ 36%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_index_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.cpp +[ 34%] Building CXX object CMakeFiles/topindex.dir/src/seq/break_point.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topindex.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/break_point.cpp +[ 34%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/str_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/str_util.cpp +[ 34%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.cpp:20: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.cpp:18: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 37%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/residue_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/residue_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/residue_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/residue_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/residue_util.cpp -[ 37%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/support_peak_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/support_peak_type.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/support_peak_type.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/support_peak_type.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/support_peak_type.cpp -[ 37%] Building CXX object CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/env_set.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/env_set.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/env_set.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/env_set.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_set/env_set.cpp -[ 38%] Building CXX object CMakeFiles/topmg.dir/src/common/xml/xml_dom_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topmg.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topmg.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_util.cpp -[ 38%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/time_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/time_util.cpp -[ 38%] Building CXX object CMakeFiles/topdiff_gui.dir/src/gui/util/gui_message.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/gui/util/gui_message.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/gui/util/gui_message.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/gui/util/gui_message.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/util/gui_message.cpp -[ 38%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. 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-I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/util/str_util.cpp.o -MF 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-I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/db_block.cpp.o -MF CMakeFiles/topindex.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/db_block.cpp +[ 35%] Building CXX object CMakeFiles/toppic.dir/src/common/xml/xml_dom_err_handler.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu 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CMakeFiles/toppic.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_err_handler.cpp +[ 35%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_index_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.cpp +[ 35%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/trunc_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/trunc_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/trunc_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.cpp:18: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.cpp:20: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 38%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_reader.cpp.o +[ 35%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.cpp +[ 35%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/logger.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/util/logger.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/logger.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.cpp:18: @@ -5148,66 +5135,42 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 38%] Building CXX object CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp.o -MF CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp.o.d -o CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp -[ 38%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_document.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_document.cpp -[ 38%] Building CXX object CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/env_set_util.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/env_set_util.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/env_set_util.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/env_set_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_set/env_set_util.cpp -/build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_set/env_set.cpp: In member function 'void toppic::EnvSet::removePeakData(toppic::MsMapPtr)': -/build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_set/env_set.cpp:143:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 143 | if (peak_num != theo_env_peak_intes.size()) { - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_set/env_set.cpp: In member function 'std::pair toppic::EnvSet::getMzErrorAndWeight()': -/build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_set/env_set.cpp:189:55: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 189 | std::pair EnvSet::getMzErrorAndWeight() { - | ^ -/build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_set/env_set.cpp: In member function 'bool toppic::EnvSet::containValidEnvs(int, int)': -/build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_set/env_set.cpp:304:44: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 304 | if (seed_spec_idx < 0 || seed_spec_idx >= ms_map_env_list_.size()) { - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 38%] Building CXX object CMakeFiles/topmg.dir/src/common/xml/xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topmg.dir/src/common/xml/xml_writer.cpp.o.d -o 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-Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.cpp -[ 38%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.cpp -[ 38%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 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CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_err_handler.cpp +[ 35%] Building CXX object CMakeFiles/toppic.dir/src/common/xml/xml_dom_impl.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/toppic.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/toppic.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_impl.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.cpp:21: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 38%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/support_peak_type_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/support_peak_type_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/support_peak_type_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/support_peak_type_base.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/support_peak_type_base.cpp +[ 35%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/mem_check.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/mem_check.cpp +[ 35%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/util/file_util.cpp.o +[ 35%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/util/logger.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/file_util.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/util/logger.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/logger.cpp +[ 35%] Building CXX object CMakeFiles/toppic.dir/src/common/xml/xml_dom_parser.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/toppic.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/toppic.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_parser.cpp +[ 35%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/time_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/time_util.cpp +[ 35%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.cpp +[ 35%] Building CXX object CMakeFiles/topmg.dir/src/common/util/time_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topmg.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topmg.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/time_util.cpp +[ 35%] Building CXX object CMakeFiles/toppic.dir/src/common/xml/xml_dom_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/toppic.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/toppic.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.cpp:21: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 38%] Building CXX object CMakeFiles/toppic.dir/src/common/util/time_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/toppic.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/toppic.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/time_util.cpp -[ 38%] Building CXX object CMakeFiles/topmg.dir/src/seq/alter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/alter.cpp.o -MF CMakeFiles/topmg.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/alter.cpp -[ 38%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_impl.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_impl.cpp -[ 38%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/str_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 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-I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/toppic.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/toppic.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_document.cpp -[ 38%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_parser.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong 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-I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/trunc.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/trunc.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/trunc.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/trunc.cpp -[ 38%] Building CXX object CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/xic.cpp.o -/usr/bin/c++ -DONNX_ML=1 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CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/xic.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/xic.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/xic.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_set/xic.cpp -[ 38%] Building CXX object CMakeFiles/topindex_gui.dir/topindex_gui_autogen/PJRF6ORA5X/qrc_icon.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/topindex_gui_autogen/PJRF6ORA5X/qrc_icon.cpp.o -MF CMakeFiles/topindex_gui.dir/topindex_gui_autogen/PJRF6ORA5X/qrc_icon.cpp.o.d -o CMakeFiles/topindex_gui.dir/topindex_gui_autogen/PJRF6ORA5X/qrc_icon.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/qrc_icon.cpp -[ 39%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_sub_seq.cpp.o +[ 36%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_sub_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.cpp +[ 36%] Building CXX object CMakeFiles/topfd.dir/src/topfd/ecscore/env_coll/env_coll_util.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/ecscore/env_coll/env_coll_util.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/ecscore/env_coll/env_coll_util.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/ecscore/env_coll/env_coll_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_coll/env_coll_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.hpp:18, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.cpp:15: @@ -5215,33 +5178,41 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 39%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_util.cpp -[ 40%] Building CXX object CMakeFiles/toppic.dir/src/common/xml/xml_dom_err_handler.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/toppic.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/toppic.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_err_handler.cpp -[ 40%] Building CXX object CMakeFiles/topmg.dir/src/seq/alter_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu 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/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/alter_type.cpp -[ 40%] Building CXX object CMakeFiles/topmg.dir/src/seq/amino_acid_replace.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 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-I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/time_util.cpp -In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.cpp:15: +[ 36%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/str_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX 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-ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/time_util.cpp +[ 36%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_document.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/include 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/build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_document.cpp +[ 37%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/time_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/time_util.cpp +[ 38%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_document.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_document.cpp +[ 38%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_err_handler.cpp +[ 38%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_sub_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.cpp +[ 38%] Building CXX object CMakeFiles/topmg.dir/src/common/xml/xml_dom_err_handler.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topmg.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/topmg.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_err_handler.cpp +In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.cpp:15: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 40%] Building CXX object CMakeFiles/toppic.dir/src/common/xml/xml_dom_impl.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/toppic.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/toppic.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_impl.cpp -[ 40%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/trunc_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/trunc_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/trunc_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/trunc_base.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/trunc_base.cpp -[ 40%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_document.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_document.cpp -[ 40%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_sub_util.cpp.o +[ 38%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/logger.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/util/logger.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/logger.cpp +[ 38%] Building CXX object CMakeFiles/toppic.dir/src/seq/alter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/alter.cpp.o -MF CMakeFiles/toppic.dir/src/seq/alter.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/alter.cpp +[ 38%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_sub_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.cpp -[ 40%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.hpp:18, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.hpp:18, @@ -5250,14 +5221,34 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 40%] Building CXX object CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/xic_util.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/xic_util.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/xic_util.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/xic_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_set/xic_util.cpp -[ 40%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o 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CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_writer.cpp -[ 40%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_sub_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.cpp -[ 40%] Building CXX object CMakeFiles/toppic.dir/src/common/xml/xml_dom_parser.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/toppic.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/toppic.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_parser.cpp +[ 38%] Building CXX object CMakeFiles/toppic.dir/src/seq/alter_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/alter_type.cpp.o -MF CMakeFiles/toppic.dir/src/seq/alter_type.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/alter_type.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/alter_type.cpp +[ 40%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_impl.cpp.o +[ 40%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/mem_check.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_impl.cpp +[ 40%] Building CXX object CMakeFiles/topmg.dir/src/common/xml/xml_dom_impl.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topmg.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topmg.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_impl.cpp +[ 40%] Building CXX object CMakeFiles/topfd.dir/src/topfd/ecscore/env_coll/env_coll_writer.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/ecscore/env_coll/env_coll_writer.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/ecscore/env_coll/env_coll_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/ecscore/env_coll/env_coll_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_coll/env_coll_writer.cpp +[ 40%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_parser.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_parser.cpp +[ 40%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_err_handler.cpp +[ 40%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_sub_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.cpp +In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.cpp:15: +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 40%] Building CXX object CMakeFiles/topmg.dir/src/common/xml/xml_dom_parser.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topmg.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topmg.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_parser.cpp +[ 40%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:25: @@ -5265,44 +5256,36 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 40%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_impl.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_impl.cpp +[ 40%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_util.cpp +[ 40%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/util/mem_check.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/mem_check.cpp +[ 41%] Building CXX object CMakeFiles/topmg.dir/src/common/xml/xml_dom_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topmg.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topmg.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_util.cpp +[ 42%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp +[ 42%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_parser.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_parser.cpp +[ 42%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_util.cpp +[ 42%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_err_handler.cpp +[ 42%] Building CXX object CMakeFiles/toppic.dir/src/seq/amino_acid_replace.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/toppic.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.cpp:15: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:25: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 41%] Building CXX object CMakeFiles/topfd.dir/src/topfd/ecscore/para/ecscore_para.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 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Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' -[ 41%] Built target topindex_gui -[ 41%] Building CXX object CMakeFiles/topmg_gui.dir/src/gui/util/command.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/gui/util/command.cpp.o -MF CMakeFiles/topmg_gui.dir/src/gui/util/command.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/gui/util/command.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/util/command.cpp -[ 41%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_sub_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.cpp -[ 41%] Building CXX object CMakeFiles/topdiff.dir/src/seq/local_anno.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/local_anno.cpp -[ 41%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/trunc_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas 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-I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/toppic.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/toppic.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_util.cpp -[ 41%] Building CXX object CMakeFiles/toppic.dir/src/common/xml/xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/toppic.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_writer.cpp -[ 41%] Building CXX object CMakeFiles/topfd.dir/src/topfd/ecscore/score/comp_env_cnn_score.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/ecscore/score/comp_env_cnn_score.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/ecscore/score/comp_env_cnn_score.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/ecscore/score/comp_env_cnn_score.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/score/comp_env_cnn_score.cpp /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:186:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 186 | fai_build(db_file_name.c_str()); @@ -5311,38 +5294,16 @@ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:235:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 235 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 41%] Building CXX object CMakeFiles/toppic.dir/src/seq/alter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/alter.cpp.o -MF CMakeFiles/toppic.dir/src/seq/alter.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/alter.cpp -[ 41%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 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CMakeFiles/topindex.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp -[ 42%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/file_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/file_util.cpp -In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:25: -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 42%] Building CXX object CMakeFiles/topfd.dir/src/topfd/ecscore/score/component_score.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/ecscore/score/component_score.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/ecscore/score/component_score.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/ecscore/score/component_score.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/score/component_score.cpp -[ 43%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_impl.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 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/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:186:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 186 | fai_build(db_file_name.c_str()); @@ -5351,33 +5312,63 @@ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:235:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 235 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 43%] Building CXX object CMakeFiles/topmg_gui.dir/src/gui/util/gui_message.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 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in GCC 10.1 + 189 | std::pair EnvSet::getMzErrorAndWeight() { + | ^ +/build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_set/env_set.cpp: In member function 'bool toppic::EnvSet::containValidEnvs(int, int)': +/build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_set/env_set.cpp:304:44: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 304 | if (seed_spec_idx < 0 || seed_spec_idx >= ms_map_env_list_.size()) { + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 42%] Building CXX object CMakeFiles/topdiff.dir/src/seq/local_anno.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src 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CMakeFiles/topmg.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.cpp:15: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 43%] Building CXX object CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 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CMakeFiles/topmg_gui.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/time_util.cpp +[ 42%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/util/str_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/str_util.cpp +[ 42%] Building CXX object CMakeFiles/topmg.dir/src/seq/bp_spec.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topmg.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/bp_spec.cpp +[ 42%] Building CXX object CMakeFiles/toppic_gui.dir/src/gui/util/command.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/gui/util/command.cpp.o -MF CMakeFiles/toppic_gui.dir/src/gui/util/command.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/gui/util/command.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/util/command.cpp +[ 43%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_index_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.cpp +[ 43%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.cpp:20: @@ -5385,18 +5376,8 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 43%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/mem_check.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/mem_check.cpp -[ 43%] Building CXX object CMakeFiles/topdiff.dir/src/seq/prot_candidate.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/prot_candidate.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/prot_candidate.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/prot_candidate.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/prot_candidate.cpp -[ 43%] Building CXX object CMakeFiles/topindex.dir/src/seq/prot_candidate.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/prot_candidate.cpp.o -MF CMakeFiles/topindex.dir/src/seq/prot_candidate.cpp.o.d -o 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-Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/gui/util/command.cpp.o -MF CMakeFiles/topfd_gui.dir/src/gui/util/command.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/gui/util/command.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/util/command.cpp -[ 43%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.cpp -[ 43%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.cpp +[ 43%] Building CXX object CMakeFiles/topindex.dir/src/seq/local_anno.cpp.o 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CMakeFiles/topindex.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/local_anno.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.cpp:18: @@ -5404,60 +5385,65 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 43%] Building CXX object CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/mass_shift.cpp +[ 43%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_document.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_document.cpp +[ 43%] Building CXX object CMakeFiles/topdiff.dir/src/seq/prot_candidate.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/prot_candidate.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/prot_candidate.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/prot_candidate.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/prot_candidate.cpp +[ 43%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/util/time_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/time_util.cpp +[ 43%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.cpp:21: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 44%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_sub_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.cpp -[ 44%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_sub_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.cpp -[ 44%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp -In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.cpp:15: -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.cpp:15: -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 44%] Building CXX object CMakeFiles/topfd.dir/src/topfd/ecscore/score/onnx_ecscore.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/ecscore/score/onnx_ecscore.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/ecscore/score/onnx_ecscore.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/ecscore/score/onnx_ecscore.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/score/onnx_ecscore.cpp +[ 43%] Building CXX object CMakeFiles/topindex.dir/src/seq/mass_shift.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topindex.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/mass_shift.cpp +[ 43%] Building CXX object CMakeFiles/topindex.dir/src/seq/prot_candidate.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/prot_candidate.cpp.o -MF CMakeFiles/topindex.dir/src/seq/prot_candidate.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/prot_candidate.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/prot_candidate.cpp +[ 43%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets 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CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_impl.cpp +[ 43%] Building CXX object CMakeFiles/topmg.dir/src/seq/break_point.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. 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-I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_util.cpp +[ 43%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_writer.cpp +[ 43%] Building CXX object CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:25: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.cpp:30: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 44%] Building CXX object CMakeFiles/toppic.dir/src/seq/break_point.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/break_point.cpp.o -MF CMakeFiles/toppic.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/break_point.cpp -[ 44%] Building CXX object CMakeFiles/toppic.dir/src/seq/db_block.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/db_block.cpp.o -MF CMakeFiles/toppic.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/db_block.cpp -[ 45%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_index_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.cpp -[ 45%] Building CXX object CMakeFiles/topdiff.dir/src/seq/prot_score.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/prot_score.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/prot_score.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/prot_score.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/prot_score.cpp -[ 45%] Building CXX object CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:186:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 186 | fai_build(db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.cpp -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int, int)': -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:235:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 235 | fai_build(new_db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 43%] Building CXX object CMakeFiles/topindex.dir/src/seq/prot_score.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/prot_score.cpp.o -MF CMakeFiles/topindex.dir/src/seq/prot_score.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/prot_score.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/prot_score.cpp +[ 43%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_index_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.cpp +[ 43%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topindex.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.cpp +[ 43%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_err_handler.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.cpp:20: @@ -5472,27 +5458,33 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 45%] Building CXX object CMakeFiles/topindex.dir/src/seq/prot_score.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/prot_score.cpp.o -MF CMakeFiles/topindex.dir/src/seq/prot_score.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/prot_score.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/prot_score.cpp -[ 45%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topmg.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/local_anno.cpp +[ 43%] Building CXX object CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/xic.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/xic.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/xic.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/xic.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_set/xic.cpp +[ 43%] Building CXX object CMakeFiles/topfd_gui.dir/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp.o -MF CMakeFiles/topfd_gui.dir/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp.o.d -o CMakeFiles/topfd_gui.dir/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp +[ 43%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_sub_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.cpp +[ 43%] Building CXX object CMakeFiles/toppic_gui.dir/src/gui/util/gui_message.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/gui/util/gui_message.cpp.o -MF CMakeFiles/toppic_gui.dir/src/gui/util/gui_message.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/gui/util/gui_message.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/util/gui_message.cpp +[ 43%] Building CXX object CMakeFiles/topmg_gui.dir/src/gui/util/command.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 45%] Building CXX object CMakeFiles/topmg.dir/src/seq/mass_shift.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topmg.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/mass_shift.cpp -[ 46%] Building CXX object CMakeFiles/topmg_gui.dir/topmg_gui_autogen/OBJ2MOUSMQ/qrc_icon.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/topmg_gui_autogen/OBJ2MOUSMQ/qrc_icon.cpp.o -MF CMakeFiles/topmg_gui.dir/topmg_gui_autogen/OBJ2MOUSMQ/qrc_icon.cpp.o.d -o CMakeFiles/topmg_gui.dir/topmg_gui_autogen/OBJ2MOUSMQ/qrc_icon.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/qrc_icon.cpp -[ 46%] Linking CXX executable bin/topmg_gui -/usr/bin/cmake -E cmake_link_script CMakeFiles/topmg_gui.dir/link.txt --verbose=1 -[ 46%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_impl.cpp +[ 44%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_parser.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_parser.cpp +[ 44%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.cpp +[ 44%] Linking CXX executable bin/topfd_gui +/usr/bin/cmake -E cmake_link_script CMakeFiles/topfd_gui.dir/link.txt --verbose=1 +[ 44%] Building CXX object CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/xic_util.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/xic_util.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/xic_util.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/ecscore/env_set/xic_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/env_set/xic_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.cpp:18: @@ -5500,64 +5492,73 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 46%] Building CXX object CMakeFiles/topfd.dir/src/topfd/envcnn/onnx_env_cnn.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui 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-Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/str_util.cpp -[ 46%] Building CXX object CMakeFiles/topdiff.dir/src/seq/proteoform_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.cpp +[ 44%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_sub_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.cpp +[ 44%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.cpp:28: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.cpp:15: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 46%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong 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-ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.cpp +[ 45%] Building CXX object CMakeFiles/topindex_gui.dir/topindex_gui_autogen/PJRF6ORA5X/qrc_icon.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/topindex_gui_autogen/PJRF6ORA5X/qrc_icon.cpp.o -MF CMakeFiles/topindex_gui.dir/topindex_gui_autogen/PJRF6ORA5X/qrc_icon.cpp.o.d -o CMakeFiles/topindex_gui.dir/topindex_gui_autogen/PJRF6ORA5X/qrc_icon.cpp.o -c 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mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 46%] Building CXX object CMakeFiles/topfd_gui.dir/src/gui/util/gui_message.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/gui/util/gui_message.cpp.o -MF CMakeFiles/topfd_gui.dir/src/gui/util/gui_message.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/gui/util/gui_message.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/util/gui_message.cpp -[ 46%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/time_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/util/time_util.cpp -[ 46%] Building CXX object CMakeFiles/topmg.dir/src/seq/prot_score.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/prot_score.cpp.o -MF CMakeFiles/topmg.dir/src/seq/prot_score.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/prot_score.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/prot_score.cpp -[ 46%] Building CXX object CMakeFiles/topdiff.dir/src/seq/proteoform_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_type.cpp -[ 46%] Building CXX object CMakeFiles/topmg.dir/src/seq/proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topmg.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.cpp +[ 45%] Building CXX object CMakeFiles/topfd.dir/src/topfd/ecscore/score/comp_env_cnn_score.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/ecscore/score/comp_env_cnn_score.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/ecscore/score/comp_env_cnn_score.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/ecscore/score/comp_env_cnn_score.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/topfd/ecscore/score/comp_env_cnn_score.cpp +[ 45%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp +[ 45%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/xml/xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_writer.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.cpp:30: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:25: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 46%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_sub_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.cpp +[ 45%] Building CXX object CMakeFiles/topmg_gui.dir/src/gui/util/gui_message.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/gui/util/gui_message.cpp.o -MF CMakeFiles/topmg_gui.dir/src/gui/util/gui_message.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/gui/util/gui_message.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/util/gui_message.cpp +[ 45%] Building CXX object CMakeFiles/toppic_gui.dir/toppic_gui_autogen/23BTPJIYMA/qrc_icon.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/toppic_gui_autogen/23BTPJIYMA/qrc_icon.cpp.o -MF CMakeFiles/toppic_gui.dir/toppic_gui_autogen/23BTPJIYMA/qrc_icon.cpp.o.d -o CMakeFiles/toppic_gui.dir/toppic_gui_autogen/23BTPJIYMA/qrc_icon.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/qrc_icon.cpp +[ 46%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_sub_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.cpp +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:186:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 186 | fai_build(db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int, int)': +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:235:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 235 | fai_build(new_db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 46%] Linking CXX executable bin/toppic_gui +/usr/bin/cmake -E cmake_link_script CMakeFiles/toppic_gui.dir/link.txt --verbose=1 In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.hpp:18, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.cpp:15: @@ -5565,51 +5566,50 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 46%] Building CXX object CMakeFiles/topfd_gui.dir/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp.o -MF CMakeFiles/topfd_gui.dir/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp.o.d -o 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-I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/activation_base.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/activation_base.cpp +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. 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-I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.cpp:25: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.cpp:15: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 46%] Building CXX object CMakeFiles/topmg.dir/src/seq/proteoform_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong 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-I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/gui/util/command.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/gui/util/command.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/gui/util/command.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/util/command.cpp +[ 47%] Building CXX object CMakeFiles/topmg_gui.dir/topmg_gui_autogen/OBJ2MOUSMQ/qrc_icon.cpp.o +/usr/bin/c++ 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CMakeFiles/topmg_gui.dir/topmg_gui_autogen/OBJ2MOUSMQ/qrc_icon.cpp.o -MF CMakeFiles/topmg_gui.dir/topmg_gui_autogen/OBJ2MOUSMQ/qrc_icon.cpp.o.d -o CMakeFiles/topmg_gui.dir/topmg_gui_autogen/OBJ2MOUSMQ/qrc_icon.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/qrc_icon.cpp +[ 47%] Building CXX object CMakeFiles/topdiff.dir/src/seq/proteoform_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_type.cpp +[ 47%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.cpp:28: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +[ 47%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 47%] Building CXX object 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-ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/topmg.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_type.cpp -[ 47%] Building CXX object CMakeFiles/topfd.dir/src/common/base/amino_acid.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/amino_acid.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/amino_acid.cpp -[ 47%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_sub_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 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/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_err_handler.cpp -[ 47%] Building CXX object CMakeFiles/topmg.dir/src/seq/proteoform_util.cpp.o -/usr/bin/c++ 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/usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.11 -lpthread -lz +make[3]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' +[ 47%] Built target toppic_gui +[ 47%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/topindex.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_type.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18, @@ -5618,26 +5618,10 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define 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-I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/xml/xml_dom_parser.cpp -[ 48%] Building CXX object CMakeFiles/topmg.dir/src/seq/residue_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 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-I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topmg.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/local_anno.cpp /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:186:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 186 | fai_build(db_file_name.c_str()); @@ -5646,16 +5630,41 @@ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_util.cpp:235:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 235 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 49%] Building CXX object CMakeFiles/topfd.dir/src/common/base/base_data.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src 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CXX object CMakeFiles/topfd.dir/src/topfd/ecscore/score/ecscore_writer.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 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-I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topmg.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topmg.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/para/sp_para.cpp -[ 51%] Building CXX object CMakeFiles/topindex.dir/src/para/peak_tolerance.cpp.o -/usr/bin/c++ 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CMakeFiles/topindex.dir/src/para/peak_tolerance.cpp.o.d -o CMakeFiles/topindex.dir/src/para/peak_tolerance.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/para/peak_tolerance.cpp -[ 51%] Building CXX object CMakeFiles/toppic.dir/src/seq/prot_score.cpp.o +[ 48%] Building CXX object CMakeFiles/topmg.dir/src/seq/prot_score.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/prot_score.cpp.o -MF CMakeFiles/topmg.dir/src/seq/prot_score.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/prot_score.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/prot_score.cpp +[ 48%] Building CXX object CMakeFiles/toppic.dir/src/seq/prot_score.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/prot_score.cpp.o -MF CMakeFiles/toppic.dir/src/seq/prot_score.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/prot_score.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/prot_score.cpp -[ 52%] Building CXX object CMakeFiles/toppic.dir/src/seq/proteoform.cpp.o +[ 48%] Building CXX object CMakeFiles/topmg.dir/src/seq/proteoform.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topmg.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.cpp +In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.cpp:30: +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 49%] Building CXX object CMakeFiles/toppic.dir/src/seq/proteoform.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/toppic.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.cpp +[ 49%] Building CXX object CMakeFiles/topdiff.dir/src/para/peak_tolerance.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 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CMakeFiles/topfd.dir/src/common/base/mod.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/mod.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/mod.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/mod.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/mod.cpp -[ 52%] Building CXX object CMakeFiles/topdiff.dir/src/para/prsm_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topdiff.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topdiff.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/para/prsm_para.cpp -[ 52%] Building CXX object CMakeFiles/toppic_gui.dir/src/gui/util/gui_message.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/gui/util/gui_message.cpp.o -MF CMakeFiles/toppic_gui.dir/src/gui/util/gui_message.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/gui/util/gui_message.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/gui/util/gui_message.cpp -[ 52%] Building CXX object 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-ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/toppic.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/diag_index.cpp:23: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.cpp:25: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 52%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/env.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/env/env.cpp -[ 52%] Building CXX object CMakeFiles/topfd.dir/src/common/base/mod_util.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/env/charge_cmp.cpp -[ 52%] Building CXX object CMakeFiles/toppic.dir/src/seq/proteoform_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/toppic.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.cpp +[ 51%] Building CXX object CMakeFiles/topmg.dir/src/seq/proteoform_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topmg.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18, @@ -5762,57 +5766,56 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 52%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/env.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/env.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/env.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/env/env.cpp -[ 52%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/env_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 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-I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/ion.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/ion.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/common/base/ion.cpp +[ 51%] Building CXX object CMakeFiles/topfd.dir/src/common/base/ion_type.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/ion_type.cpp.o -MF 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-I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/index/diag_index.cpp.o -MF CMakeFiles/topindex.dir/src/filter/index/diag_index.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/index/diag_index.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/diag_index.cpp +[ 51%] Building CXX object CMakeFiles/toppic.dir/src/seq/residue_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/residue_seq.cpp.o -MF 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CMakeFiles/topdiff.dir/src/ms/env/match_env_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/env/charge_cmp.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18, @@ -5849,18 +5852,37 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 56%] Building CXX object CMakeFiles/topfd.dir/src/common/base/ptm_util.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 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-I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/env/match_env_filter.cpp +[ 55%] Building CXX object CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_factory.cpp +[ 55%] Building CXX object CMakeFiles/topfd.dir/src/common/base/ptm.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem 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/build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_factory.hpp:18, @@ -5869,44 +5891,52 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 56%] Building CXX object CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/env/env_filter.cpp +[ 55%] Building CXX object CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 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CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_util.cpp -[ 56%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/env_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/env/env_filter.cpp -[ 56%] Building CXX object CMakeFiles/topindex.dir/src/filter/mng/diag_filter_mng.cpp.o +[ 55%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/env_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets 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-I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/theo_peak.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.hpp:20, @@ -6328,9 +6337,19 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/peak_ion_pair_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.cpp -[ 74%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm.cpp.o +[ 72%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/peak.cpp.o 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-Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/expected_value.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/expected_value.cpp +[ 72%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/peak_list_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/peak_list_util.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/peak_list_util.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/peak_list_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/peak_list_util.cpp +[ 73%] Building CXX object CMakeFiles/toppic.dir/src/prsm/peak_ion_pair.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/peak_ion_pair.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair.cpp +[ 73%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/factory/spectrum_set_factory.cpp +[ 73%] Building CXX object CMakeFiles/toppic.dir/src/prsm/peak_ion_pair_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.cpp +[ 73%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, @@ -6340,16 +6359,23 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.cpp +[ 73%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/feature/feature_merge.cpp +[ 74%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/peak_util.cpp.o In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.hpp:20, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.cpp:21: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/peak_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/peak_util.cpp /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 74%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/precursor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/precursor.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/precursor.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/precursor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/precursor.cpp +[ 74%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.cpp +[ 74%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/prm_peak.cpp.o In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.hpp:20, @@ -6358,20 +6384,17 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/topfd.dir/src/ms/msmap/ms_map_peak.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/msmap/ms_map_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/msmap/ms_map_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/msmap/ms_map_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/msmap/ms_map_peak.cpp -[ 74%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/peak.cpp -[ 75%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_algo.cpp -[ 75%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_algo.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/prm_peak.cpp +[ 74%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_algo.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include 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CMakeFiles/topdiff.dir/src/prsm/prsm_cluster.cpp.o +[ 74%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/rm_break_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags 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-I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cluster.cpp -[ 76%] Building CXX object CMakeFiles/topfd.dir/src/ms/msmap/ms_map_row.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 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-ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cluster.cpp +[ 75%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_algo.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_algo.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21, @@ -6380,8 +6403,46 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 76%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_coverage.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_coverage.cpp +[ 75%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_coverage.cpp +[ 75%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/spectrum_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/spectrum_set.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/spectrum_set.cpp +[ 75%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cutoff_selector.cpp +In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_coverage.cpp:17: +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cutoff_selector.cpp:19: +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 75%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature_cluster.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/feature/frac_feature_cluster.cpp +[ 75%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature_reader.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/feature/frac_feature_reader.cpp +[ 75%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature_writer.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/feature/frac_feature_writer.cpp +[ 75%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_dia_selector.cpp +In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_dia_selector.cpp:18: +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 75%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/support_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/support_peak.cpp +[ 75%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cluster.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21, @@ -6390,6 +6451,44 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 75%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr.cpp +[ 75%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_fdr_groups.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_fdr_groups.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_fdr_groups.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_fdr_groups.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr_groups.cpp +[ 75%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/theo_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/theo_peak.cpp +In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr.cpp:19: +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr_groups.cpp:20: +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 75%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_xml_feature_reader.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/feature/frac_xml_feature_reader.cpp +[ 75%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_feature_cluster.cpp +In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_feature_cluster.cpp:22: +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 75%] Building CXX object CMakeFiles/topmg.dir/src/prsm/expected_value.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/expected_value.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/expected_value.cpp +[ 75%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_coverage.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_coverage.cpp:17: @@ -6397,8 +6496,36 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 76%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cutoff_selector.cpp +[ 75%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/single_charge_feature.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/single_charge_feature.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/single_charge_feature.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/single_charge_feature.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/feature/single_charge_feature.cpp +[ 75%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/spec_feature.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/spec_feature.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/feature/spec_feature.cpp +[ 75%] Building CXX object CMakeFiles/topmg.dir/src/prsm/peak_ion_pair.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/peak_ion_pair.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair.cpp +[ 75%] Building CXX object CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.cpp +[ 75%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.cpp +In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.cpp:19: +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.cpp:21: +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 76%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/spec_feature_reader.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/spec_feature_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/spec_feature_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/spec_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/feature/spec_feature_reader.cpp +[ 76%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cutoff_selector.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cutoff_selector.cpp:19: @@ -6406,58 +6533,68 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 76%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_coverage.cpp -[ 76%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/peak_list_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/peak_list_util.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/peak_list_util.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/peak_list_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/peak_list_util.cpp +[ 76%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_form_filter.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_coverage.cpp:17: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_form_filter.cpp:17: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 76%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_dia_selector.cpp -[ 76%] Building CXX object CMakeFiles/topfd.dir/src/ms/msmap/ms_map_row_header.cpp.o +[ 77%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_algo.cpp +[ 77%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/spec_feature_writer.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/spec_feature_writer.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/spec_feature_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/spec_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/feature/spec_feature_writer.cpp +[ 77%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cluster.cpp +In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cluster.cpp:18: +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 77%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_dia_selector.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_dia_selector.cpp:18: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/msmap/ms_map_row_header.cpp.o -MF CMakeFiles/topfd.dir/src/ms/msmap/ms_map_row_header.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/msmap/ms_map_row_header.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/msmap/ms_map_row_header.cpp /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 76%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/base_peak_type.cpp -[ 76%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/baseline_util.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/baseline_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/baseline_util.cpp -[ 76%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF 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-ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/msmap/ms_map.cpp.o -MF CMakeFiles/topfd.dir/src/ms/msmap/ms_map.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/msmap/ms_map.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/msmap/ms_map.cpp +[ 77%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_match_table_writer.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cutoff_selector.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_match_table_writer.cpp:22: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 76%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/deconv_json_merge.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/deconv_json_merge.cpp -[ 76%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/peak_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/peak_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/peak_util.cpp -[ 76%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/precursor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/precursor.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/precursor.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/precursor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/precursor.cpp -[ 76%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr.cpp -[ 76%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/deconv_ms_util.cpp -[ 76%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_dia_selector.cpp +[ 77%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_prob.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_prob.cpp:16: +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 77%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_coverage.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_coverage.cpp +[ 77%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.cpp +In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_coverage.cpp:17: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? @@ -6465,136 +6602,129 @@ In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_dia_selector.cpp:18: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.cpp:19: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 76%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_fdr_groups.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_fdr_groups.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_fdr_groups.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_fdr_groups.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr_groups.cpp -[ 76%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_feature_cluster.cpp -[ 76%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/prm_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 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-I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/msmap/ms_map_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/msmap/ms_map_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/msmap/ms_map_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/msmap/ms_map_peak.cpp +[ 77%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cutoff_selector.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr_groups.cpp:20: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cutoff_selector.cpp:19: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 77%] Building CXX object CMakeFiles/topfd.dir/src/ms/msmap/ms_map_row.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/msmap/ms_map_row.cpp.o -MF CMakeFiles/topfd.dir/src/ms/msmap/ms_map_row.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/msmap/ms_map_row.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/msmap/ms_map_row.cpp +[ 77%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_dia_selector.cpp +[ 78%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_feature_cluster.cpp:22: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_dia_selector.cpp:18: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 76%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/rm_break_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 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-I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/support_peak.cpp -[ 76%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/deconv_peak.cpp.o -/usr/bin/c++ -DONNX_ML=1 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CMakeFiles/topfd.dir/src/ms/spec/deconv_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/deconv_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/deconv_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/deconv_peak.cpp -[ 76%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr.cpp -[ 77%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/env_peak.cpp +[ 78%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_fdr.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr.cpp +[ 78%] Building CXX object CMakeFiles/topfd.dir/src/ms/msmap/ms_map_row_header.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/msmap/ms_map_row_header.cpp.o -MF CMakeFiles/topfd.dir/src/ms/msmap/ms_map_row_header.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/msmap/ms_map_row_header.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/msmap/ms_map_row_header.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.cpp:16: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 77%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/theo_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/theo_peak.cpp -[ 77%] Building CXX object CMakeFiles/toppic.dir/src/prsm/expected_value.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/expected_value.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/expected_value.cpp -[ 77%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_fdr_groups.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_fdr_groups.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_fdr_groups.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_fdr_groups.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr_groups.cpp -[ 77%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_form_filter.cpp -[ 77%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_match_table_writer.cpp +[ 78%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr.cpp +[ 78%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_fdr_groups.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_fdr_groups.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_fdr_groups.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_fdr_groups.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr_groups.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr_groups.cpp:20: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr.cpp:19: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_form_filter.cpp:17: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr.cpp:19: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_match_table_writer.cpp:22: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr_groups.cpp:20: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 77%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/extend_peak.cpp -[ 77%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/ms_header.cpp -[ 77%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_feature_cluster.cpp +[ 78%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/base_peak_type.cpp +[ 78%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/baseline_util.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_fdr_groups.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_fdr_groups.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_fdr_groups.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr_groups.cpp +[ 78%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/deconv_json_merge.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/deconv_json_merge.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_feature_cluster.cpp:22: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr_groups.cpp:20: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 78%] Building CXX object CMakeFiles/toppic.dir/src/prsm/peak_ion_pair.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/peak_ion_pair.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair.cpp -[ 78%] Building CXX object CMakeFiles/toppic.dir/src/prsm/peak_ion_pair_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.cpp +[ 78%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_feature_cluster.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_feature_cluster.cpp:22: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 78%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_prob.cpp +[ 78%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/deconv_ms_util.cpp +[ 78%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_simple_cluster.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_prob.cpp:16: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_simple_cluster.cpp:19: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 79%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.cpp +[ 78%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_form_filter.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_form_filter.cpp:17: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 79%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_form_filter.cpp -[ 79%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/msalign_frac_merge.cpp +[ 78%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/deconv_peak.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/deconv_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/deconv_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/deconv_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/deconv_peak.cpp +[ 78%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_feature_cluster.cpp +[ 79%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_form_filter.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_form_filter.cpp:17: @@ -6602,28 +6732,32 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 79%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.cpp -[ 79%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.cpp:21: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_feature_cluster.cpp:22: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 79%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_match_table_writer.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.cpp:16: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_match_table_writer.cpp:22: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 79%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_match_table_writer.cpp +[ 80%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/env_peak.cpp +[ 80%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/extend_peak.cpp +[ 80%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_match_table_writer.cpp +[ 80%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/ms_header.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, @@ -6632,34 +6766,32 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 79%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_simple_cluster.cpp +[ 80%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/msalign_frac_merge.cpp +[ 80%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_prob.cpp +[ 80%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_stat.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_simple_cluster.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_prob.cpp:16: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 79%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_reader.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/msalign_reader.cpp -[ 79%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_algo.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_algo.cpp -[ 79%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_prob.cpp -[ 79%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.cpp +[ 81%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_prob.cpp:16: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_stat.cpp:20: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 79%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cluster.cpp +[ 81%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_prob.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, @@ -6670,47 +6802,52 @@ 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cluster.cpp:18: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_prob.cpp:16: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 79%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_reader_util.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_reader_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_reader_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_reader_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/msalign_reader_util.cpp -[ 80%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.cpp +[ 81%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.cpp:16: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.cpp:19: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 80%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_stat.cpp +[ 81%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_reader.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/msalign_reader.cpp +[ 81%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_reader_util.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_reader_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_reader_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_reader_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/msalign_reader_util.cpp +[ 81%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_stat.cpp:20: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.cpp:16: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 80%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_coverage.cpp +[ 81%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.cpp +[ 81%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_thread_merge.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/msalign_thread_merge.cpp +[ 81%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_simple_cluster.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_coverage.cpp:17: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.cpp:16: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 80%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_thread_merge.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/msalign_thread_merge.cpp -[ 80%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_simple_cluster.cpp +[ 81%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21, @@ -6719,8 +6856,10 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 80%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str.cpp +[ 81%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_simple_cluster.cpp +[ 81%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_stat.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21, @@ -6730,37 +6869,28 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 80%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cutoff_selector.cpp -In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_cutoff_selector.cpp:19: -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 80%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str_merge.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str_merge.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_simple_cluster.cpp:19: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 80%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_dia_selector.cpp -[ 80%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_stat.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_dia_selector.cpp:18: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_stat.cpp:20: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 81%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/msalign_util.cpp +[ 81%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_stat.cpp +[ 81%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/msalign_writer.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, @@ -6769,24 +6899,25 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 80%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/msalign_util.cpp -[ 80%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/msalign_writer.cpp -[ 80%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_top_selector.cpp +[ 81%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_top_selector.cpp:18: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str.cpp:19: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 80%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str.cpp -[ 80%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_fdr.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr.cpp +[ 81%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/peak.cpp +[ 81%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str.cpp +[ 81%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str_merge.cpp +[ 81%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str_merge.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21, @@ -6796,12 +6927,10 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 80%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str_merge.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str_merge.cpp:19: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? @@ -6814,31 +6943,33 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 80%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.cpp -[ 80%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_fdr_groups.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_fdr_groups.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_fdr_groups.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_fdr_groups.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr_groups.cpp +[ 81%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str_merge.cpp +[ 81%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/peak_list_util.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/peak_list_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/peak_list_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/peak_list_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/peak_list_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.cpp:24: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str_merge.cpp:19: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 82%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/peak_util.cpp +[ 82%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/precursor.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/precursor.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/precursor.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/precursor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/precursor.cpp +[ 82%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_top_selector.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_fdr_groups.cpp:20: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_top_selector.cpp:18: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -[ 80%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/peak.cpp -[ 80%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/peak_list_util.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/peak_list_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/peak_list_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/peak_list_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/peak_list_util.cpp -[ 80%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o +[ 82%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_top_selector.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, @@ -6848,14 +6979,18 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 80%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_feature_cluster.cpp -[ 80%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_util.cpp.o +[ 82%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/prm_peak.cpp +[ 82%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_util.cpp.o +[ 82%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.cpp /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.cpp +[ 82%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_feature_cluster.cpp:22: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.cpp:24: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? @@ -6868,8 +7003,6 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 80%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21, @@ -6879,21 +7012,12 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 81%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/peak_util.cpp -[ 81%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/precursor.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/precursor.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/precursor.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/precursor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/precursor.cpp -[ 82%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_form_filter.cpp -[ 82%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.cpp -In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_form_filter.cpp:17: -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 82%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/rm_break_type.cpp +[ 82%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/spectrum_set.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/spectrum_set.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/spectrum_set.cpp +[ 83%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21, @@ -6903,8 +7027,12 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 82%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.cpp +[ 83%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/support_peak.cpp +[ 83%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.cpp +[ 83%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21, @@ -6915,52 +7043,37 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 82%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.cpp:16: -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 82%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_match_table_writer.cpp -[ 82%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/prm_peak.cpp -In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_match_table_writer.cpp:22: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.cpp:16: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 82%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.cpp +[ 83%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/theo_peak.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/theo_peak.cpp +[ 83%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.cpp:16: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.cpp:16: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 82%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.cpp -[ 82%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_prob.cpp -[ 82%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.cpp +[ 83%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/search_fasta_match.cpp +[ 83%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_prob.cpp:16: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/search_fasta_match.cpp:21: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? @@ -6975,51 +7088,21 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 82%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/rm_break_type.cpp -In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.cpp:19: -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 82%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/search_fasta_match.cpp -[ 82%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.cpp -In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/search_fasta_match.cpp:21: -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 83%] Building CXX object CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_group.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_group.cpp.o -MF CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_group.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_group.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/mzml_ms_group.cpp +[ 83%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_top_selector.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.cpp:16: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_top_selector.cpp:18: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 82%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/spectrum_set.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/spectrum_set.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/spectrum_set.cpp -[ 83%] Building CXX object CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/search_fasta_match.cpp [ 84%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/search_fasta_match.cpp:21: -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 84%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/support_peak.cpp -In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.cpp:19: @@ -7027,57 +7110,33 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 84%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.cpp [ 84%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.cpp:24: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 84%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/theo_peak.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/spec/theo_peak.cpp -[ 84%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_simple_cluster.cpp -[ 84%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.cpp:19: -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_simple_cluster.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.cpp:19: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 84%] Building CXX object CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_group.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_group.cpp.o -MF CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_group.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_group.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/mzml_ms_group.cpp [ 84%] Building CXX object CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_group_reader.cpp.o /usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_group_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_group_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_group_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/mzml_ms_group_reader.cpp -[ 84%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_stat.cpp [ 84%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str.cpp -In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_stat.cpp:20: -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -[ 84%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str.cpp +[ 84%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21, @@ -7090,100 +7149,110 @@ In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.cpp:19: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 84%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str_merge.cpp -[ 84%] Building CXX object CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_json_writer.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_json_writer.cpp.o -MF CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_json_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_json_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/mzml_ms_json_writer.cpp +[ 84%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str_merge.cpp:20: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.cpp:16: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 84%] Building CXX object CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/search_fasta_match.cpp +[ 84%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str_merge.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/mzml_ms_group_reader.hpp:20, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/mzml_ms_group_reader.cpp:17: /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.hpp:15: warning: header guard 'TOPPIC_MS_MZML_PW_MS_READER_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_MS_MZML_PW_MS_READER_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.hpp:16: note: 'TOPPIC_MZ_MZML_PW_MS_READER_HPP_' is defined here; did you mean 'TOPPIC_MS_MZML_PW_MS_READER_HPP_'? 16 | #define TOPPIC_MZ_MZML_PW_MS_READER_HPP_ -[ 84%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_table_writer.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_table_writer.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/search_fasta_match.cpp:21: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 84%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str_merge.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_str_merge.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str_merge.cpp:20: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 84%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.cpp +[ 84%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.cpp +[ 84%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.cpp:19: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 84%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str.cpp -[ 84%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str.cpp:15: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.cpp:16: +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 84%] Building CXX object CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_json_writer.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_json_writer.cpp.o -MF CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_json_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/mzml/mzml_ms_json_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/mzml_ms_json_writer.cpp +[ 85%] Building CXX object CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/search_fasta_match.cpp +[ 85%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_table_writer.cpp +In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/search_fasta_match.cpp:21: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 84%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_top_selector.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_util.cpp:17: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_table_writer.cpp:19: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 85%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_top_selector.cpp:18: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_util.cpp:17: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 84%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.cpp +[ 85%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.cpp:24: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.cpp:19: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? @@ -7205,27 +7274,26 @@ /usr/include/c++/15/bits/stl_pair.h:1164:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1164 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ -[ 85%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.cpp -[ 85%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.cpp -[ 85%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str_merge.cpp +[ 85%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.cpp:19: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 85%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.cpp +[ 85%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.cpp:16: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.cpp:19: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? @@ -7233,39 +7301,29 @@ In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str_merge.cpp:20: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.cpp:19: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 85%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.cpp [ 85%] Building CXX object CMakeFiles/topfd.dir/src/ms/mzml/mzml_profile.cpp.o /usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/mzml/mzml_profile.cpp.o -MF CMakeFiles/topfd.dir/src/ms/mzml/mzml_profile.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/mzml/mzml_profile.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/mzml_profile.cpp -[ 85%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.cpp +[ 85%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_str.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_util.cpp:16: -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str.cpp:15: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ [ 85%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_set.cpp +[ 86%] Building CXX object CMakeFiles/topfd.dir/src/ms/mzml/pw_ms_reader.cpp.o +/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/mzml/pw_ms_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/mzml/pw_ms_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/mzml/pw_ms_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, @@ -7276,28 +7334,28 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 85%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_table_writer.cpp +[ 86%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_util.cpp +[ 86%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.cpp +[ 86%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_table_writer.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str.cpp:15: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 85%] Building CXX object CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/search_fasta_match.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/search_fasta_match.cpp:21: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.cpp:19: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 85%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, @@ -7308,82 +7366,80 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 86%] Building CXX object CMakeFiles/topfd.dir/src/ms/mzml/pw_ms_reader.cpp.o -/usr/bin/c++ -DONNX_ML=1 -DONNX_NAMESPACE=onnx -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -isystem /usr/include/onnxruntime -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/mzml/pw_ms_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/mzml/pw_ms_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/mzml/pw_ms_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.cpp -[ 86%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_util.cpp +[ 86%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str_merge.cpp +[ 86%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str_merge.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_util.cpp:17: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str_merge.cpp:20: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 86%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.cpp -[ 86%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o +[ 86%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_table_writer.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str_merge.cpp:20: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.cpp /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.cpp:24: +/build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.hpp:15: warning: header guard 'TOPPIC_MS_MZML_PW_MS_READER_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_MS_MZML_PW_MS_READER_HPP_ +/build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.hpp:16: note: 'TOPPIC_MZ_MZML_PW_MS_READER_HPP_' is defined here; did you mean 'TOPPIC_MS_MZML_PW_MS_READER_HPP_'? + 16 | #define TOPPIC_MZ_MZML_PW_MS_READER_HPP_ In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_table_writer.cpp:19: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 86%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.cpp +[ 86%] Building CXX object CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o -MF CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o.d -o CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/merge/feature_prsm.cpp +[ 86%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_util.cpp:17: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.cpp:24: -/build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.hpp:15: warning: header guard 'TOPPIC_MS_MZML_PW_MS_READER_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_MS_MZML_PW_MS_READER_HPP_ -/build/reproducible-path/toppic-1.7.10+cleaned1/src/ms/mzml/pw_ms_reader.hpp:16: note: 'TOPPIC_MZ_MZML_PW_MS_READER_HPP_' is defined here; did you mean 'TOPPIC_MS_MZML_PW_MS_READER_HPP_'? - 16 | #define TOPPIC_MZ_MZML_PW_MS_READER_HPP_ -[ 86%] Building CXX object CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o -MF CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o.d -o CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/merge/feature_prsm.cpp -[ 86%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_set.cpp -[ 86%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.cpp +[ 86%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.cpp +[ 87%] Building CXX object CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/merge/feature_sample_merge.cpp +[ 87%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_table_writer.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_set.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_set.cpp:16: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.cpp:19: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -[ 87%] Building CXX object CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/merge/feature_sample_merge.cpp /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_table_writer.cpp:19: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 87%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/merge/feature_sample_merge.cpp:23: @@ -7391,51 +7447,40 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 87%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_set.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_util.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_util.cpp:16: -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 87%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str.cpp -[ 87%] Building CXX object CMakeFiles/topmg.dir/src/prsm/theo_peak_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.cpp -[ 87%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str_merge.cpp -In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str.cpp:15: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_set.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_set.cpp:16: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 87%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_util.cpp:17: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 87%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_str_merge.cpp:20: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_util.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_util.cpp:16: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 88%] Building CXX object CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o -MF CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/diag/diag_filter.cpp -[ 88%] Building CXX object CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o -MF CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/diag/diag_filter_processor.cpp In file included from /usr/include/c++/15/bits/stl_algobase.h:64, from /usr/include/c++/15/bits/stl_tree.h:65, from /usr/include/c++/15/set:64, @@ -7447,23 +7492,24 @@ /usr/include/c++/15/bits/stl_pair.h:1164:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 1164 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ -[ 88%] Building CXX object CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o -MF CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/diag_index.cpp +[ 87%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/diag/diag_filter.cpp:22: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.cpp:19: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 88%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_table_writer.cpp +[ 87%] Building CXX object CMakeFiles/topmg.dir/src/prsm/theo_peak_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.cpp +[ 88%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_set.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/diag/diag_filter_processor.cpp:21: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.cpp:19: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? @@ -7471,191 +7517,198 @@ In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_reader.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_table_writer.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_set.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_set.cpp:16: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 88%] Building CXX object CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o -MF CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/one_ptm_index.cpp -[ 88%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_util.cpp +[ 88%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/diag_index.cpp:23: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_util.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_util.cpp:16: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 89%] Building CXX object CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o -MF CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/diag/diag_filter.cpp +[ 89%] Building CXX object CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o -MF CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/diag/diag_filter_processor.cpp +[ 89%] Building CXX object CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o -MF CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/diag_index.cpp +[ 89%] Building CXX object CMakeFiles/toppic.dir/src/prsm/theo_peak_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.cpp +[ 89%] Building CXX object CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o -MF CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/one_ptm_index.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_util.cpp:17: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/diag/diag_filter.cpp:22: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 88%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/one_ptm_index.cpp:24: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.cpp:19: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/diag/diag_filter_processor.cpp:21: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 89%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_set.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_set.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_set.cpp:16: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/diag_index.cpp:23: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 89%] Building CXX object CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o -MF CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/zero_ptm_index.cpp -[ 89%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o -MF CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match.cpp +[ 89%] Building CXX object CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o -MF CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/diag/diag_filter.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/zero_ptm_index.cpp:24: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/one_ptm_index.cpp:24: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 89%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_util.cpp +[ 89%] Building CXX object CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o -MF CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/diag/diag_filter_processor.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_util.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_xml_writer_util.cpp:16: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/diag/diag_filter.cpp:22: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 89%] Building CXX object CMakeFiles/toppic.dir/src/prsm/theo_peak_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.cpp -[ 89%] Building CXX object CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o -MF CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/diag/diag_filter.cpp +[ 89%] Building CXX object CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o -MF CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/diag_index.cpp +[ 89%] Building CXX object CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o -MF CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/one_ptm_index.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/diag/diag_filter_processor.cpp:21: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 89%] Building CXX object CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o -MF CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/diag/diag_filter_processor.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/simple_prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/diag/diag_filter.cpp:22: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/diag_index.cpp:23: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/diag/diag_filter_processor.cpp:21: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/one_ptm_index.cpp:24: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 89%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_factory.cpp +[ 89%] Building CXX object CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o -MF CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/zero_ptm_index.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_factory.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_factory.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/zero_ptm_index.cpp:24: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define 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CMakeFiles/topdiff.dir/src/prsm/prsm_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o -o bin/topdiff -lxerces-c 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-I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_factory.cpp +[ 90%] Building CXX object CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/oneptm/one_ptm_filter.cpp:21: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_factory.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_factory.cpp:19: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 90%] Building CXX object CMakeFiles/toppic.dir/src/filter/index/zero_ptm_index.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/index/zero_ptm_index.cpp.o -MF CMakeFiles/toppic.dir/src/filter/index/zero_ptm_index.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/index/zero_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/zero_ptm_index.cpp +[ 90%] Building CXX object CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/mng/zero_ptm_filter_mng.cpp +[ 90%] Building CXX object CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter.cpp.o -MF CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/oneptm/one_ptm_filter.cpp +[ 90%] Building CXX object CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -MF CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/oneptm/one_ptm_filter_processor.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/index/zero_ptm_index.cpp:24: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/oneptm/one_ptm_filter.cpp:21: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 90%] Building CXX object CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -MF CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/oneptm/one_ptm_filter_processor.cpp +[ 91%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/mng/diag_filter_mng.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/oneptm/one_ptm_filter_processor.cpp:23: @@ -7663,8 +7716,14 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 90%] Building CXX object CMakeFiles/topmg.dir/src/filter/varptm/var_ptm_filter.cpp.o +[ 91%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/mng/index_file_name.cpp +[ 91%] Building CXX object CMakeFiles/topmg.dir/src/filter/varptm/var_ptm_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/varptm/var_ptm_filter.cpp.o -MF CMakeFiles/topmg.dir/src/filter/varptm/var_ptm_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/varptm/var_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/varptm/var_ptm_filter.cpp +[ 91%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/mng/one_ptm_filter_mng.cpp +[ 91%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/var_ptm_filter_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/var_ptm_filter_mng.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/var_ptm_filter_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/var_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/mng/var_ptm_filter_mng.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18, @@ -7673,33 +7732,29 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 90%] Building CXX object CMakeFiles/toppic.dir/src/filter/massmatch/mass_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/massmatch/mass_match.cpp.o -MF CMakeFiles/toppic.dir/src/filter/massmatch/mass_match.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/massmatch/mass_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match.cpp -[ 90%] Building CXX object CMakeFiles/topmg.dir/src/filter/varptm/var_ptm_filter_processor.cpp.o +[ 91%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/mng/zero_ptm_filter_mng.cpp +[ 91%] Building CXX object CMakeFiles/topmg.dir/src/filter/varptm/var_ptm_filter_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/varptm/var_ptm_filter_processor.cpp.o -MF CMakeFiles/topmg.dir/src/filter/varptm/var_ptm_filter_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/varptm/var_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/varptm/var_ptm_filter_processor.cpp +[ 91%] Building CXX object CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o -MF CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/oneptm/one_ptm_filter.cpp +[ 91%] Building CXX object CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -MF CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/zeroptm/zero_ptm_filter.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/varptm/var_ptm_filter_processor.cpp:22: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/oneptm/one_ptm_filter.cpp:21: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 90%] Building CXX object CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_factory.cpp -[ 90%] Building CXX object CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_factory.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/massmatch/mass_match_factory.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/varptm/var_ptm_filter_processor.cpp:22: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 90%] Building CXX object CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -MF CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/zeroptm/zero_ptm_filter.cpp -[ 91%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/mng/diag_filter_mng.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18, @@ -7710,24 +7765,26 @@ 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ [ 91%] Building CXX object CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -MF CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/zeroptm/zero_ptm_filter_processor.cpp -[ 91%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.cpp:16: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/zeroptm/zero_ptm_filter_processor.cpp:22: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 91%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/zeroptm/zero_ptm_filter_processor.cpp:22: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.cpp:16: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ [ 91%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o +[ 91%] Building CXX object CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -MF CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/oneptm/one_ptm_filter_processor.cpp /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, @@ -7738,12 +7795,25 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 91%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/mng/index_file_name.cpp -[ 91%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/mng/one_ptm_filter_mng.cpp -[ 91%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/var_ptm_filter_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/var_ptm_filter_mng.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/var_ptm_filter_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/var_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/mng/var_ptm_filter_mng.cpp +In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/oneptm/one_ptm_filter_processor.cpp:23: +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 91%] Building CXX object CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter.cpp.o -MF CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/varptm/var_ptm_filter.cpp +In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/varptm/var_ptm_filter.cpp:20: +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 91%] Building CXX object CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter_processor.cpp.o -MF CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/varptm/var_ptm_filter_processor.cpp [ 91%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_pair_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, @@ -7754,10 +7824,25 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/varptm/var_ptm_filter_processor.cpp:22: +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 91%] Building CXX object CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -MF CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/zeroptm/zero_ptm_filter.cpp +In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/zeroptm/zero_ptm_filter.cpp:20: +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ [ 92%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diagonal_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/diag/diagonal_util.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diagonal_util.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diagonal_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diagonal_util.cpp -[ 92%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/mng/zero_ptm_filter_mng.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.hpp:20, @@ -7768,8 +7853,6 @@ 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ [ 92%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/dist.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/dist.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/dist.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/dist.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graph/dist.cpp -[ 92%] Building CXX object CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o -MF CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/oneptm/one_ptm_filter.cpp [ 92%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graph/proteo_anno.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, @@ -7780,15 +7863,26 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 92%] Building CXX object CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -MF CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/zeroptm/zero_ptm_filter_processor.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/oneptm/one_ptm_filter.cpp:21: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/zeroptm/zero_ptm_filter_processor.cpp:22: +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 93%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.cpp +In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.cpp:16: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 92%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/proteo_graph.cpp.o +[ 93%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/proteo_graph.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/proteo_graph.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/proteo_graph.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/proteo_graph.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graph/proteo_graph.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20, @@ -7797,9 +7891,23 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 92%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o +[ 93%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header_util.cpp +In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header_util.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header_util.cpp:18: +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 93%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graph/proteo_graph_reader.cpp -[ 92%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o +[ 93%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graph/spec_graph.cpp +[ 93%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graph/spec_graph_reader.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graph/proteo_anno.hpp:28, @@ -7809,16 +7917,16 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graph/spec_graph.cpp -[ 92%] Building CXX object CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -MF CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/oneptm/one_ptm_filter_processor.cpp -[ 92%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graph/spec_graph_reader.cpp -[ 92%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o +[ 93%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o -MF CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graphalign/graph_align.cpp +[ 93%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o -MF CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graphalign/graph_align_processor.cpp +[ 93%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_pair_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/oneptm/one_ptm_filter_processor.cpp:23: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_pair_util.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_pair_util.cpp:18: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? @@ -7831,8 +7939,6 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 92%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o -MF CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graphalign/graph_align_processor.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_seq.hpp:18, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_sub_util.hpp:18, @@ -7841,66 +7947,83 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 92%] Building CXX object CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter.cpp.o -MF CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/varptm/var_ptm_filter.cpp -[ 92%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o -MF CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graphalign/graph_dp_node.cpp -[ 92%] Building CXX object CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter_processor.cpp.o -MF CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/varptm/var_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/varptm/var_ptm_filter_processor.cpp +[ 93%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diagonal_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/varptm/var_ptm_filter.cpp:20: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diagonal_util.cpp:20: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 93%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/dp_pair.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/varptm/var_ptm_filter_processor.cpp:22: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/dp_pair.hpp:19, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/dp_pair.cpp:18: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 92%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_post_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graphalign/graph_post_processor.cpp.o -MF CMakeFiles/topmg.dir/src/search/graphalign/graph_post_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graphalign/graph_post_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graphalign/graph_post_processor.cpp -[ 93%] Building CXX object CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o -MF CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_test_num.cpp +[ 93%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/one_ptm_search_processor.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graphalign/graph_post_processor.cpp:31: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/one_ptm_search_processor.cpp:20: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 93%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o -MF CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graphalign/graph_dp_node.cpp +[ 93%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/one_ptm_slow_match.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_test_num.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header_util.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/one_ptm_slow_match.cpp:16: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 93%] Building CXX object CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -MF CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/zeroptm/zero_ptm_filter.cpp -[ 93%] Building CXX object CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -MF CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/zeroptm/zero_ptm_filter_processor.cpp +[ 93%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/path_type.cpp +[ 93%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/ps_align.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_util.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/zeroptm/zero_ptm_filter.cpp:20: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/ps_align.cpp:18: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 93%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_post_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graphalign/graph_post_processor.cpp.o -MF CMakeFiles/topmg.dir/src/search/graphalign/graph_post_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graphalign/graph_post_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graphalign/graph_post_processor.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/filter/zeroptm/zero_ptm_filter_processor.cpp:22: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/graphalign/graph_post_processor.cpp:31: +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 94%] Building CXX object CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o -MF CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_test_num.cpp +In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_test_num.cpp:19: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 93%] Building CXX object CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o +[ 94%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/ptm_search_mng.cpp +[ 94%] Building CXX object CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o -MF CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, @@ -7910,7 +8033,9 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 93%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o +[ 94%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/ptmsearch/comp_shift_low_mem.cpp +[ 94%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o -MF CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/mcmc/comp_pvalue_mcmc.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, @@ -7921,28 +8046,12 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 93%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o +[ 94%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -MF CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/mcmc/mcmc_dpr_processor.cpp -[ 94%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.cpp -[ 94%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o -MF CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/mcmc/mcmc_mass_table_util.cpp -In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.cpp:16: -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/mcmc/mcmc_dpr_processor.cpp:39: -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 95%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/ptmsearch/ptm_search_processor.cpp +[ 95%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/ptmsearch/ptm_search_slow_filter.cpp /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/mcmc/comp_pvalue_mcmc.cpp: In member function 'toppic::ResiduePtrVec toppic::CompPValueMCMC::randomTrans(toppic::ResiduePtrVec)': /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/mcmc/comp_pvalue_mcmc.cpp:77:22: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 77 | std::random_shuffle(ori_res.begin(), ori_res.end()); @@ -7958,303 +8067,233 @@ /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ -[ 94%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header_util.cpp -In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header_util.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header_util.cpp:18: -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 94%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_pair_util.cpp +[ 95%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/ptmsearch/ptm_slow_match.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_pair_util.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_pair_util.cpp:18: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/ptmsearch/ptm_search_slow_filter.cpp:18: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 94%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diagonal_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/theo_peak_util.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diagonal_util.cpp:20: -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 94%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_cleavage.cpp -[ 94%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/dp_pair.cpp -In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_cleavage.cpp:15: -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/dp_pair.hpp:19, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/dp_pair.cpp:18: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/mcmc/mcmc_dpr_processor.cpp:39: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 94%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/one_ptm_search_processor.cpp -[ 94%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_file_list.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_file_list.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_file_list.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_file_list.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_file_list.cpp -[ 94%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/one_ptm_slow_match.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/one_ptm_search_processor.cpp:20: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/ptmsearch/ptm_search_processor.cpp:21: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 95%] Building CXX object CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_align.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_align.cpp.o -MF CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_align.cpp.o.d -o CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_align.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/varptmsearch/var_ptm_align.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.hpp:20, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header_util.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/one_ptm_slow_match.cpp:16: -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 94%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_mass_shift.cpp -[ 94%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_proteoform.cpp -In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_cleavage.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_proteoform.cpp:18: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/ptmsearch/ptm_slow_match.cpp:16: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 94%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_prsm.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_prsm.cpp:17: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/varptmsearch/var_ptm_align.cpp:19: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 94%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_ptm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_ptm.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_ptm.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_ptm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_ptm.cpp -[ 95%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_ptm_position.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_ptm_position.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_ptm_position.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_ptm_position.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_ptm_position.cpp -[ 95%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/path_type.cpp -[ 95%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/ps_align.cpp -[ 95%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/ptm_search_mng.cpp +[ 95%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets 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CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_search_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/varptmsearch/var_ptm_search_mng.cpp +[ 95%] Building CXX object CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_search_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/varptmsearch/var_ptm_search_processor.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/oneptmsearch/ps_align.cpp:18: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/varptmsearch/var_ptm_search_processor.cpp:22: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 95%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_residue.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_residue.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_residue.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_residue.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_residue.cpp -[ 95%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o +[ 95%] Building CXX object CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_slow_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_slow_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_slow_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_slow_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/varptmsearch/var_ptm_slow_match.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_residue.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_residue.cpp:17: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header_util.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/varptmsearch/var_ptm_slow_match.cpp:17: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/ptmsearch/comp_shift_low_mem.cpp -[ 95%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_xml_util.cpp +[ 95%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_fast_match.cpp +[ 95%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_fast_search.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_xml_util.cpp:17: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_fast_match.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_fast_match.cpp:15: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 96%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/ptmsearch/ptm_search_processor.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_xml_writer_set.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/ptmsearch/ptm_search_processor.cpp:21: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_fast_search.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_fast_search.cpp:17: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 96%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/ptmsearch/ptm_search_slow_filter.cpp -[ 96%] Building CXX object CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o -MF CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/json_transformer.cpp +[ 95%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_search_processor.cpp +[ 95%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_cleavage.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/ptmsearch/ptm_search_slow_filter.cpp:18: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_search_processor.cpp:20: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 96%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/ptmsearch/ptm_slow_match.cpp +[ 95%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_file_list.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_file_list.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_file_list.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_file_list.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_file_list.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header_util.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/ptmsearch/ptm_slow_match.cpp:16: -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 96%] Building CXX object CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o -MF CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/xml_generator.cpp -In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/xml_generator.cpp:24: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_cleavage.cpp:15: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 96%] Building CXX object CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_align.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_align.cpp.o -MF CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_align.cpp.o.d -o CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_align.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/varptmsearch/var_ptm_align.cpp +[ 95%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_util.cpp +[ 95%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_mass_shift.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/varptmsearch/var_ptm_align.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_util.cpp:15: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 96%] Building CXX object CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_search_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_search_mng.cpp.o -MF CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_search_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_search_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/varptmsearch/var_ptm_search_mng.cpp -[ 96%] Building CXX object CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_search_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/varptmsearch/var_ptm_search_processor.cpp -[ 96%] Building CXX object CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_slow_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_slow_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_slow_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/varptmsearch/var_ptm_slow_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/varptmsearch/var_ptm_slow_match.cpp +[ 96%] Building CXX object CMakeFiles/toppic.dir/src/stat/count/count_test_num.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/count/count_test_num.cpp.o -MF CMakeFiles/toppic.dir/src/stat/count/count_test_num.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/count/count_test_num.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_test_num.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/diag/diag_header_util.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/varptmsearch/var_ptm_slow_match.cpp:17: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_test_num.cpp:19: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 96%] Building CXX object CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o -MF CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_util.cpp +[ 96%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_proteoform.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/varptmsearch/var_ptm_search_processor.cpp:22: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_util.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_util.cpp:18: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 96%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_fast_match.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_fast_match.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_fast_match.cpp:15: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_cleavage.hpp:23, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_proteoform.cpp:18: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 96%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_fast_search.cpp +[ 96%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_prsm.cpp +[ 96%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_ptm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_ptm.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_ptm.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_ptm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_ptm.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_fast_search.hpp:18, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_fast_search.cpp:17: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_prsm.cpp:17: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 96%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_search_processor.cpp -[ 96%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_util.cpp +[ 97%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_ptm_position.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_ptm_position.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_ptm_position.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_ptm_position.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_ptm_position.cpp +[ 97%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_prob_value.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_search_processor.cpp:20: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_prob_value.hpp:22, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_prob_value.cpp:19: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 97%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_residue.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_residue.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_residue.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_residue.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_residue.cpp +[ 97%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_xml_util.cpp +[ 97%] Building CXX object CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o -MF CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/json_transformer.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform_factory.hpp:19, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/search/zeroptmsearch/zero_ptm_util.cpp:15: -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 97%] Building CXX object CMakeFiles/toppic.dir/src/stat/count/count_test_num.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/count/count_test_num.cpp.o -MF CMakeFiles/toppic.dir/src/stat/count/count_test_num.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/count/count_test_num.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_test_num.cpp -[ 97%] Building CXX object CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o -MF CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_util.cpp -In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_test_num.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_xml_util.cpp:17: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_util.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/count/count_util.cpp:18: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_residue.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_residue.cpp:17: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 97%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_prob_value.cpp [ 97%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_prob_value_array.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_prob_value.hpp:22, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_prob_value.cpp:19: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_prob_value_array.hpp:20, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_prob_value_array.cpp:15: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 97%] Building CXX object CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o -MF CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/xml_generator.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_prob_value_array.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_prob_value_array.cpp:15: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/xml_generator.cpp:24: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ [ 97%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_pvalue_array.cpp +[ 97%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_pvalue_lookup_table.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21, @@ -8264,10 +8303,6 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 97%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/comp_pvalue_lookup_table.cpp -[ 97%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/evalue_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/evalue_processor.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/evalue_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/evalue_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/evalue_processor.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21, @@ -8277,12 +8312,12 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 97%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/evalue_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/evalue_processor.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/evalue_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/evalue_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/evalue_processor.cpp [ 97%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/prob_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/prob_peak.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/prob_peak.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/prob_peak.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/prob_peak.cpp [ 97%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/tdgf_mng.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/tdgf_mng.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/tdgf_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/tdgf_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/tdgf/tdgf_mng.cpp -[ 97%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/local/local_mng.cpp.o -MF CMakeFiles/toppic.dir/src/stat/local/local_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/local/local_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/local/local_mng.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21, @@ -8291,10 +8326,14 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 97%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/local/local_mng.cpp.o -MF CMakeFiles/toppic.dir/src/stat/local/local_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/local/local_mng.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/local/local_mng.cpp [ 97%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/local/local_processor.cpp.o -MF CMakeFiles/toppic.dir/src/stat/local/local_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/local/local_processor.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/local/local_processor.cpp [ 98%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_proteoform.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/local/local_proteoform.cpp.o -MF CMakeFiles/toppic.dir/src/stat/local/local_proteoform.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/local/local_proteoform.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/local/local_proteoform.cpp +[ 98%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o -MF CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/local/local_util.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm.hpp:21, @@ -8304,6 +8343,8 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 98%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_cleavage.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/prsm_reader.hpp:21, @@ -8312,14 +8353,10 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 98%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o -MF CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/local/local_util.cpp -[ 98%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_cleavage.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_cleavage.cpp:15: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/local/local_util.cpp:22: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? @@ -8327,7 +8364,7 @@ In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.hpp:20, - from /build/reproducible-path/toppic-1.7.10+cleaned1/src/stat/local/local_util.cpp:22: + from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_cleavage.cpp:15: /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? @@ -8348,13 +8385,7 @@ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ [ 98%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_prsm.cpp.o -[ 98%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_ptm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_prsm.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_prsm.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_prsm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_prsm.cpp -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_ptm.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_ptm.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_ptm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_ptm.cpp -[ 98%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_ptm_position.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_ptm_position.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_ptm_position.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_ptm_position.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_ptm_position.cpp -[ 98%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_residue.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_residue.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_residue.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_residue.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_residue.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/prsm/peak_ion_pair_util.hpp:20, @@ -8363,6 +8394,12 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 98%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_ptm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_ptm.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_ptm.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_ptm.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_ptm.cpp +[ 98%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_ptm_position.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_ptm_position.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_ptm_position.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_ptm_position.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_ptm_position.cpp +[ 98%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_residue.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.7.10+cleaned1 -I/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.7.10+cleaned1/src -I/build/reproducible-path/toppic-1.7.10+cleaned1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.7.10+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++17 -Wl,-rpath=RIGIN/../lib/toppic,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_residue.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_residue.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_residue.cpp.o -c /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_residue.cpp In file included from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.7.10+cleaned1/src/visual/anno_residue.hpp:20, @@ -8406,8 +8443,7 @@ make[2]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/toppic-1.7.10+cleaned1/obj-aarch64-linux-gnu' - dh_auto_test -O--buildsystem=cmake - rm -fr -- /tmp/dh-xdg-rundir-SbzxtaQD +dh: command-omitted: The call to "dh_auto_test -O--buildsystem=cmake" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake @@ -8470,10 +8506,10 @@ install -p -m0644 debian/copyright debian/toppic/usr/share/doc/toppic/copyright install -p -m0644 debian/copyright debian/toppic-common/usr/share/doc/toppic-common/copyright dh_installchangelogs -O--buildsystem=cmake - install -m0755 -d debian/toppic/usr/share/doc/toppic - install -p -m0644 debian/.debhelper/generated/toppic/dh_installchangelogs.dch.trimmed debian/toppic/usr/share/doc/toppic/changelog.Debian install -m0755 -d debian/toppic-common/usr/share/doc/toppic-common install -p -m0644 debian/.debhelper/generated/toppic-common/dh_installchangelogs.dch.trimmed debian/toppic-common/usr/share/doc/toppic-common/changelog.Debian + install -m0755 -d debian/toppic/usr/share/doc/toppic + install -p -m0644 debian/.debhelper/generated/toppic/dh_installchangelogs.dch.trimmed debian/toppic/usr/share/doc/toppic/changelog.Debian dh_installman -O--buildsystem=cmake install -m0755 -d debian/toppic/usr/share/man/man1/ install -p -m0644 ./debian/topfd.1 debian/toppic/usr/share/man/man1/topfd.1 @@ -8483,18 +8519,18 @@ install -p -m0644 ./debian/topmg.1 debian/toppic/usr/share/man/man1/topmg.1 install -m0755 -d debian/toppic/usr/share/man/man1/ install -p -m0644 ./debian/topdiff.1 debian/toppic/usr/share/man/man1/topdiff.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topfd.1 man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topmg.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topdiff.1 man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/toppic.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topfd.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topdiff.1 mv debian/toppic/usr/share/man/man1/toppic.1.dh-new debian/toppic/usr/share/man/man1/toppic.1 chmod 0644 -- debian/toppic/usr/share/man/man1/toppic.1 + mv debian/toppic/usr/share/man/man1/topfd.1.dh-new debian/toppic/usr/share/man/man1/topfd.1 + chmod 0644 -- debian/toppic/usr/share/man/man1/topfd.1 mv debian/toppic/usr/share/man/man1/topmg.1.dh-new debian/toppic/usr/share/man/man1/topmg.1 chmod 0644 -- debian/toppic/usr/share/man/man1/topmg.1 mv debian/toppic/usr/share/man/man1/topdiff.1.dh-new debian/toppic/usr/share/man/man1/topdiff.1 chmod 0644 -- debian/toppic/usr/share/man/man1/topdiff.1 - mv debian/toppic/usr/share/man/man1/topfd.1.dh-new debian/toppic/usr/share/man/man1/topfd.1 - chmod 0644 -- debian/toppic/usr/share/man/man1/topfd.1 dh_installsystemduser -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake @@ -8509,13 +8545,13 @@ ln -s toppic.1.gz debian/toppic/usr/share/man/man1/toppic_gui.1.gz dh_strip_nondeterminism -O--buildsystem=cmake Using 1762185256 as canonical time - Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/toppic_2.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/topfd_1.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/pwiz_1.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/msconvert_1.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/folder_1.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/pwiz_1.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/toppic_1.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/toppic_2.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/folder_2.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/folder_1.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=cmake cd debian/toppic cd debian/toppic-common @@ -8528,12 +8564,12 @@ dh_fixperms -O--buildsystem=cmake find debian/toppic ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/toppic-common ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s - find debian/toppic-common/usr/share/doc -type f -a -true -a ! -regex 'debian/toppic-common/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/toppic/usr/share/doc -type f -a -true -a ! -regex 'debian/toppic/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/toppic-common/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/toppic-common/usr/share/doc -type f -a -true -a ! -regex 'debian/toppic-common/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/toppic/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/toppic-common -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/toppic-common/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/toppic/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/toppic-common -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/toppic -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/toppic/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -O--buildsystem=cmake @@ -8543,16 +8579,16 @@ objcopy --compress-debug-sections debian/toppic/usr/lib/debug/.dwz/aarch64-linux-gnu/toppic.debug chmod 0644 -- debian/toppic/usr/lib/debug/.dwz/aarch64-linux-gnu/toppic.debug dh_strip -a -O--buildsystem=cmake - install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/3e - objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmg debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/3e/950dc3b450af5db639d87aa1c0146d6fc387a0.debug - chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/3e/950dc3b450af5db639d87aa1c0146d6fc387a0.debug - strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topmg - objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/3e/950dc3b450af5db639d87aa1c0146d6fc387a0.debug debian/toppic/usr/bin/topmg install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/c9 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/toppic debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/c9/d7395f78073f31b6744b65add4505bb20bfc4b.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/c9/d7395f78073f31b6744b65add4505bb20bfc4b.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/toppic objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/c9/d7395f78073f31b6744b65add4505bb20bfc4b.debug debian/toppic/usr/bin/toppic + install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/3e + objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmg debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/3e/950dc3b450af5db639d87aa1c0146d6fc387a0.debug + chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/3e/950dc3b450af5db639d87aa1c0146d6fc387a0.debug + strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topmg + objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/3e/950dc3b450af5db639d87aa1c0146d6fc387a0.debug debian/toppic/usr/bin/topmg install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/4b objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topdiff debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/4b/b70b28eb0035a515f61167bcdde93a4da3b117.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/4b/b70b28eb0035a515f61167bcdde93a4da3b117.debug @@ -8583,16 +8619,16 @@ chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/9f/165c63fbaa74cafae79719a7b1a2c0e72ff591.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topdiff_gui objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/9f/165c63fbaa74cafae79719a7b1a2c0e72ff591.debug debian/toppic/usr/bin/topdiff_gui - install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/3f - objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topfd_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/3f/a6c1a587580e79791a0e7808810505464ebb07.debug - chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/3f/a6c1a587580e79791a0e7808810505464ebb07.debug - strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topfd_gui - objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/3f/a6c1a587580e79791a0e7808810505464ebb07.debug debian/toppic/usr/bin/topfd_gui install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/87 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topindex_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/87/1b3579dba18c23c0a6b8ae680e3ca6c9a26ce5.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/87/1b3579dba18c23c0a6b8ae680e3ca6c9a26ce5.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topindex_gui objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/87/1b3579dba18c23c0a6b8ae680e3ca6c9a26ce5.debug debian/toppic/usr/bin/topindex_gui + install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/3f + objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topfd_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/3f/a6c1a587580e79791a0e7808810505464ebb07.debug + chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/3f/a6c1a587580e79791a0e7808810505464ebb07.debug + strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topfd_gui + objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/3f/a6c1a587580e79791a0e7808810505464ebb07.debug debian/toppic/usr/bin/topfd_gui install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/toppic/usr/lib/debug/.dwz/aarch64-linux-gnu debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/toppic/usr/lib/debug/.dwz @@ -8604,7 +8640,7 @@ rm -f debian/toppic/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=cmake install -m0755 -d debian/toppic/DEBIAN - dpkg-shlibdeps -Tdebian/toppic.substvars debian/toppic/usr/bin/topmg debian/toppic/usr/bin/toppic debian/toppic/usr/bin/topdiff debian/toppic/usr/bin/topfd debian/toppic/usr/bin/toppic_gui debian/toppic/usr/bin/topmg_gui debian/toppic/usr/bin/topindex debian/toppic/usr/bin/topdiff_gui debian/toppic/usr/bin/topfd_gui debian/toppic/usr/bin/topindex_gui + dpkg-shlibdeps -Tdebian/toppic.substvars debian/toppic/usr/bin/toppic debian/toppic/usr/bin/topmg debian/toppic/usr/bin/topdiff debian/toppic/usr/bin/topfd debian/toppic/usr/bin/toppic_gui debian/toppic/usr/bin/topmg_gui debian/toppic/usr/bin/topindex debian/toppic/usr/bin/topdiff_gui debian/toppic/usr/bin/topindex_gui debian/toppic/usr/bin/topfd_gui dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect @@ -8613,23 +8649,23 @@ install -m0755 -d debian/toppic/DEBIAN install -m0755 -d debian/toppic-common/DEBIAN dh_gencontrol -O--buildsystem=cmake + install -m0755 -d debian/toppic-common/DEBIAN + echo misc:Depends= >> debian/toppic-common.substvars + echo misc:Pre-Depends= >> debian/toppic-common.substvars + dpkg-gencontrol -ptoppic-common -ldebian/changelog -Tdebian/toppic-common.substvars -cdebian/control -Pdebian/toppic-common install -m0755 -d debian/toppic/DEBIAN echo misc:Depends= >> debian/toppic.substvars echo misc:Pre-Depends= >> debian/toppic.substvars install -m0755 -d debian/.debhelper/toppic/dbgsym-root/DEBIAN dpkg-gencontrol -ptoppic -ldebian/changelog -Tdebian/toppic.substvars -cdebian/control -Pdebian/.debhelper/toppic/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=toppic-dbgsym -DDepends="toppic (= \${binary:Version})" -DDescription="debug symbols for toppic" -DBuild-Ids="23f552546cff38da04f38d2568a8984f25458c2a 3e950dc3b450af5db639d87aa1c0146d6fc387a0 3fa6c1a587580e79791a0e7808810505464ebb07 4bb70b28eb0035a515f61167bcdde93a4da3b117 7ee13b9da8b03a567825d6378dbc3acda7e16ce4 871b3579dba18c23c0a6b8ae680e3ca6c9a26ce5 9f165c63fbaa74cafae79719a7b1a2c0e72ff591 c845eb84b744e66bba23cee778d66742a77c90ca c9d7395f78073f31b6744b65add4505bb20bfc4b da35fb2fad1b63e5ce788489ed1811ea351b9b29" -DSection=debug -UMulti-Arch -UReplaces -UBreaks - install -m0755 -d debian/toppic-common/DEBIAN - echo misc:Depends= >> debian/toppic-common.substvars - echo misc:Pre-Depends= >> debian/toppic-common.substvars - dpkg-gencontrol -ptoppic-common -ldebian/changelog -Tdebian/toppic-common.substvars -cdebian/control -Pdebian/toppic-common chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptoppic -ldebian/changelog -Tdebian/toppic.substvars -cdebian/control -Pdebian/toppic chmod 0644 -- debian/toppic-common/DEBIAN/control chmod 0644 -- debian/toppic/DEBIAN/control dh_md5sums -O--buildsystem=cmake install -m0755 -d debian/toppic/DEBIAN - cd debian/toppic >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums install -m0755 -d debian/toppic-common/DEBIAN + cd debian/toppic >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/toppic-common >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/toppic/DEBIAN/md5sums install -m0755 -d debian/.debhelper/toppic/dbgsym-root/DEBIAN @@ -8639,9 +8675,9 @@ dh_builddeb -O--buildsystem=cmake dpkg-deb --root-owner-group --build debian/toppic .. dpkg-deb --root-owner-group --build debian/.debhelper/toppic/dbgsym-root .. - dpkg-deb --root-owner-group --build debian/toppic-common .. dpkg-deb: building package 'toppic-dbgsym' in '../toppic-dbgsym_1.7.10+cleaned1-2_arm64.deb'. dpkg-deb: building package 'toppic' in '../toppic_1.7.10+cleaned1-2_arm64.deb'. + dpkg-deb --root-owner-group --build debian/toppic-common .. dpkg-deb: building package 'toppic-common' in '../toppic-common_1.7.10+cleaned1-2_all.deb'. dpkg-genbuildinfo --build=binary -O../toppic_1.7.10+cleaned1-2_arm64.buildinfo dpkg-genchanges --build=binary -O../toppic_1.7.10+cleaned1-2_arm64.changes @@ -8650,12 +8686,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1955575/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1955575/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/4037026 and its subdirectories -I: Current time: Sun Dec 6 18:37:55 -12 2026 -I: pbuilder-time-stamp: 1796625475 +I: removing directory /srv/workspace/pbuilder/1955575 and its subdirectories +I: Current time: Tue Nov 4 14:28:30 +14 2025 +I: pbuilder-time-stamp: 1762216110