Diff of the two buildlogs: -- --- b1/build.log 2025-04-02 17:34:20.703781918 +0000 +++ b2/build.log 2025-04-02 17:36:31.212748306 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue May 5 11:56:22 -12 2026 -I: pbuilder-time-stamp: 1778025382 +I: Current time: Thu Apr 3 07:34:24 +14 2025 +I: pbuilder-time-stamp: 1743615264 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -24,52 +24,84 @@ dpkg-source: info: applying include-dssp.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1417557/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/794752/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 2 17:34 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/794752/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/794752/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='8cc5dc1360b74381b737acb6536205f1' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1417557' - PS1='# ' - PS2='> ' + INVOCATION_ID=ea593c38392e489394656927e515b2cd + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=794752 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TMLfJDRZ/pbuilderrc_SsFe --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TMLfJDRZ/b1 --logfile b1/build.log tortoize_2.0.15-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TMLfJDRZ/pbuilderrc_RXTK --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TMLfJDRZ/b2 --logfile b2/build.log tortoize_2.0.15-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-32-cloud-arm64 #1 SMP Debian 6.1.129-1 (2025-03-06) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-32-cloud-arm64 #1 SMP Debian 6.1.129-1 (2025-03-06) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1417557/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/794752/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -195,7 +227,7 @@ Get: 72 http://deb.debian.org/debian unstable/main arm64 libmcfp-dev arm64 1.3.5-2 [19.7 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 mrc arm64 1.3.15-2 [50.8 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 nlohmann-json3-dev all 3.11.3-2 [262 kB] -Fetched 63.6 MB in 0s (231 MB/s) +Fetched 63.6 MB in 1s (93.0 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19918 files and directories currently installed.) @@ -506,7 +538,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/tortoize-2.0.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../tortoize_2.0.15-1_source.changes +I: user script /srv/workspace/pbuilder/794752/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/794752/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/tortoize-2.0.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../tortoize_2.0.15-1_source.changes dpkg-buildpackage: info: source package tortoize dpkg-buildpackage: info: source version 2.0.15-1 dpkg-buildpackage: info: source distribution unstable @@ -536,7 +572,7 @@ -- Found Threads: TRUE -- Found nlohmann_json: /usr/share/cmake/nlohmann_json/nlohmann_jsonConfig.cmake (found version "3.11.3") fof cifpp data dir: /usr/share/libcifpp --- Configuring done (0.9s) +-- Configuring done (1.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -556,71 +592,71 @@ make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu' make -f CMakeFiles/generate_tortoize_depends_file.dir/build.make CMakeFiles/generate_tortoize_depends_file.dir/depend -make -f test/CMakeFiles/generate_tortoize-unit-test_depends_file.dir/build.make test/CMakeFiles/generate_tortoize-unit-test_depends_file.dir/depend make[3]: Entering directory '/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu' cd /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/tortoize-2.0.15 /build/reproducible-path/tortoize-2.0.15 /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu/CMakeFiles/generate_tortoize_depends_file.dir/DependInfo.cmake "--color=" +make -f test/CMakeFiles/generate_tortoize-unit-test_depends_file.dir/build.make test/CMakeFiles/generate_tortoize-unit-test_depends_file.dir/depend make[3]: Entering directory '/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu' cd /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/tortoize-2.0.15 /build/reproducible-path/tortoize-2.0.15/test /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu/test /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu/test/CMakeFiles/generate_tortoize-unit-test_depends_file.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu' -make -f CMakeFiles/generate_tortoize_depends_file.dir/build.make CMakeFiles/generate_tortoize_depends_file.dir/build make[3]: Leaving directory '/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu' make -f test/CMakeFiles/generate_tortoize-unit-test_depends_file.dir/build.make test/CMakeFiles/generate_tortoize-unit-test_depends_file.dir/build make[3]: Entering directory '/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu' +make -f CMakeFiles/generate_tortoize_depends_file.dir/build.make CMakeFiles/generate_tortoize_depends_file.dir/build make[3]: Entering directory '/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu' -[ 7%] Generating depends file for tortoize-unit-test resources -[ 14%] Generating depends file for tortoize resources +[ 7%] Generating depends file for tortoize resources /usr/bin/mrc -d /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu/mrc-tortoize.dir/rsrc.d -o /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu/mrc-tortoize.dir/rsrc.obj /build/reproducible-path/tortoize-2.0.15/rsrc/rama-data.bin /build/reproducible-path/tortoize-2.0.15/rsrc/torsion-data.bin /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic /usr/share/libcifpp/mmcif_ma.dic +[ 14%] Generating depends file for tortoize-unit-test resources cd /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu/test && /usr/bin/mrc -d /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu/test/mrc-tortoize-unit-test.dir/rsrc.d -o /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu/test/mrc-tortoize-unit-test.dir/rsrc.obj /build/reproducible-path/tortoize-2.0.15/rsrc/rama-data.bin /build/reproducible-path/tortoize-2.0.15/rsrc/torsion-data.bin /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic /usr/share/libcifpp/mmcif_ma.dic make[3]: Leaving directory '/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu' [ 14%] Built target generate_tortoize_depends_file -[ 14%] Built target generate_tortoize-unit-test_depends_file make -f CMakeFiles/tortoize.dir/build.make CMakeFiles/tortoize.dir/depend -make -f test/CMakeFiles/tortoize-unit-test.dir/build.make test/CMakeFiles/tortoize-unit-test.dir/depend +[ 14%] Built target generate_tortoize-unit-test_depends_file make[3]: Entering directory '/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu' +make -f test/CMakeFiles/tortoize-unit-test.dir/build.make test/CMakeFiles/tortoize-unit-test.dir/depend make[3]: Entering directory '/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu' -[ 28%] Generating mrc-tortoize.dir/rsrc.obj [ 21%] Generating mrc-tortoize-unit-test.dir/rsrc.obj -/usr/bin/mrc -o /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu/mrc-tortoize.dir/rsrc.obj /build/reproducible-path/tortoize-2.0.15/rsrc/rama-data.bin /build/reproducible-path/tortoize-2.0.15/rsrc/torsion-data.bin /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic /usr/share/libcifpp/mmcif_ma.dic cd /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu/test && /usr/bin/mrc -o /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu/test/mrc-tortoize-unit-test.dir/rsrc.obj /build/reproducible-path/tortoize-2.0.15/rsrc/rama-data.bin /build/reproducible-path/tortoize-2.0.15/rsrc/torsion-data.bin /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic /usr/share/libcifpp/mmcif_ma.dic -cd /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/tortoize-2.0.15 /build/reproducible-path/tortoize-2.0.15 /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu/CMakeFiles/tortoize.dir/DependInfo.cmake "--color=" +[ 28%] Generating mrc-tortoize.dir/rsrc.obj +/usr/bin/mrc -o /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu/mrc-tortoize.dir/rsrc.obj /build/reproducible-path/tortoize-2.0.15/rsrc/rama-data.bin /build/reproducible-path/tortoize-2.0.15/rsrc/torsion-data.bin /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic /usr/share/libcifpp/mmcif_ma.dic cd /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/tortoize-2.0.15 /build/reproducible-path/tortoize-2.0.15/test /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu/test /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu/test/CMakeFiles/tortoize-unit-test.dir/DependInfo.cmake "--color=" -Dependencies file "mrc-tortoize.dir/rsrc.d" is newer than depends file "/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu/CMakeFiles/tortoize.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tortoize Dependencies file "test/mrc-tortoize-unit-test.dir/rsrc.d" is newer than depends file "/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu/test/CMakeFiles/tortoize-unit-test.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tortoize-unit-test make[3]: Leaving directory '/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu' -make -f CMakeFiles/tortoize.dir/build.make CMakeFiles/tortoize.dir/build -make[3]: Entering directory '/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu' make -f test/CMakeFiles/tortoize-unit-test.dir/build.make test/CMakeFiles/tortoize-unit-test.dir/build make[3]: Entering directory '/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu' -[ 50%] Building CXX object CMakeFiles/tortoize.dir/src/tortoize.cpp.o -[ 50%] Building CXX object CMakeFiles/tortoize.dir/src/dssp.cpp.o -[ 50%] Building CXX object CMakeFiles/tortoize.dir/src/dssp-io.cpp.o -[ 57%] Building CXX object CMakeFiles/tortoize.dir/src/tortoize-main.cpp.o -[ 64%] Building CXX object test/CMakeFiles/tortoize-unit-test.dir/__/src/dssp.cpp.o -[ 71%] Building CXX object test/CMakeFiles/tortoize-unit-test.dir/tortoize-unit-test.cpp.o -[ 78%] Building CXX object test/CMakeFiles/tortoize-unit-test.dir/__/src/dssp-io.cpp.o -[ 85%] Building CXX object test/CMakeFiles/tortoize-unit-test.dir/__/src/tortoize.cpp.o -/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT CMakeFiles/tortoize.dir/src/tortoize.cpp.o -MF CMakeFiles/tortoize.dir/src/tortoize.cpp.o.d -o CMakeFiles/tortoize.dir/src/tortoize.cpp.o -c /build/reproducible-path/tortoize-2.0.15/src/tortoize.cpp -/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT CMakeFiles/tortoize.dir/src/dssp.cpp.o -MF CMakeFiles/tortoize.dir/src/dssp.cpp.o.d -o CMakeFiles/tortoize.dir/src/dssp.cpp.o -c /build/reproducible-path/tortoize-2.0.15/src/dssp.cpp -/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT CMakeFiles/tortoize.dir/src/dssp-io.cpp.o -MF CMakeFiles/tortoize.dir/src/dssp-io.cpp.o.d -o CMakeFiles/tortoize.dir/src/dssp-io.cpp.o -c /build/reproducible-path/tortoize-2.0.15/src/dssp-io.cpp -/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT CMakeFiles/tortoize.dir/src/tortoize-main.cpp.o -MF CMakeFiles/tortoize.dir/src/tortoize-main.cpp.o.d -o CMakeFiles/tortoize.dir/src/tortoize-main.cpp.o -c /build/reproducible-path/tortoize-2.0.15/src/tortoize-main.cpp -cd /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.15/src -I/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/tortoize-unit-test.dir/__/src/dssp.cpp.o -MF CMakeFiles/tortoize-unit-test.dir/__/src/dssp.cpp.o.d -o CMakeFiles/tortoize-unit-test.dir/__/src/dssp.cpp.o -c /build/reproducible-path/tortoize-2.0.15/src/dssp.cpp +[ 35%] Building CXX object test/CMakeFiles/tortoize-unit-test.dir/tortoize-unit-test.cpp.o cd /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.15/src -I/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/tortoize-unit-test.dir/tortoize-unit-test.cpp.o -MF CMakeFiles/tortoize-unit-test.dir/tortoize-unit-test.cpp.o.d -o CMakeFiles/tortoize-unit-test.dir/tortoize-unit-test.cpp.o -c /build/reproducible-path/tortoize-2.0.15/test/tortoize-unit-test.cpp +[ 42%] Building CXX object test/CMakeFiles/tortoize-unit-test.dir/__/src/dssp.cpp.o +cd /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/tortoize-2.0.15 /build/reproducible-path/tortoize-2.0.15 /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu/CMakeFiles/tortoize.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.15/src -I/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/tortoize-unit-test.dir/__/src/dssp.cpp.o -MF CMakeFiles/tortoize-unit-test.dir/__/src/dssp.cpp.o.d -o CMakeFiles/tortoize-unit-test.dir/__/src/dssp.cpp.o -c /build/reproducible-path/tortoize-2.0.15/src/dssp.cpp +[ 50%] Building CXX object test/CMakeFiles/tortoize-unit-test.dir/__/src/dssp-io.cpp.o +[ 57%] Building CXX object test/CMakeFiles/tortoize-unit-test.dir/__/src/tortoize.cpp.o cd /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.15/src -I/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/tortoize-unit-test.dir/__/src/dssp-io.cpp.o -MF CMakeFiles/tortoize-unit-test.dir/__/src/dssp-io.cpp.o.d -o CMakeFiles/tortoize-unit-test.dir/__/src/dssp-io.cpp.o -c /build/reproducible-path/tortoize-2.0.15/src/dssp-io.cpp cd /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.15/src -I/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/tortoize-unit-test.dir/__/src/tortoize.cpp.o -MF CMakeFiles/tortoize-unit-test.dir/__/src/tortoize.cpp.o.d -o CMakeFiles/tortoize-unit-test.dir/__/src/tortoize.cpp.o -c /build/reproducible-path/tortoize-2.0.15/src/tortoize.cpp -[ 92%] Linking CXX executable tortoize -/usr/bin/cmake -E cmake_link_script CMakeFiles/tortoize.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tortoize.dir/link.d CMakeFiles/tortoize.dir/src/dssp.cpp.o "CMakeFiles/tortoize.dir/src/dssp-io.cpp.o" CMakeFiles/tortoize.dir/src/tortoize.cpp.o "CMakeFiles/tortoize.dir/src/tortoize-main.cpp.o" "mrc-tortoize.dir/rsrc.obj" -o tortoize /usr/lib/aarch64-linux-gnu/libcifpp.so.7.0.9 /usr/lib/aarch64-linux-gnu/libz.so +Dependencies file "mrc-tortoize.dir/rsrc.d" is newer than depends file "/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu/CMakeFiles/tortoize.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target tortoize make[3]: Leaving directory '/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu' -[ 92%] Built target tortoize -[100%] Linking CXX executable tortoize-unit-test +make -f CMakeFiles/tortoize.dir/build.make CMakeFiles/tortoize.dir/build +make[3]: Entering directory '/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu' +[ 64%] Building CXX object CMakeFiles/tortoize.dir/src/dssp.cpp.o +[ 71%] Building CXX object CMakeFiles/tortoize.dir/src/dssp-io.cpp.o +/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT CMakeFiles/tortoize.dir/src/dssp.cpp.o -MF CMakeFiles/tortoize.dir/src/dssp.cpp.o.d -o CMakeFiles/tortoize.dir/src/dssp.cpp.o -c /build/reproducible-path/tortoize-2.0.15/src/dssp.cpp +/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT CMakeFiles/tortoize.dir/src/dssp-io.cpp.o -MF CMakeFiles/tortoize.dir/src/dssp-io.cpp.o.d -o CMakeFiles/tortoize.dir/src/dssp-io.cpp.o -c /build/reproducible-path/tortoize-2.0.15/src/dssp-io.cpp +[ 78%] Building CXX object CMakeFiles/tortoize.dir/src/tortoize.cpp.o +/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT CMakeFiles/tortoize.dir/src/tortoize.cpp.o -MF CMakeFiles/tortoize.dir/src/tortoize.cpp.o.d -o CMakeFiles/tortoize.dir/src/tortoize.cpp.o -c /build/reproducible-path/tortoize-2.0.15/src/tortoize.cpp +[ 85%] Building CXX object CMakeFiles/tortoize.dir/src/tortoize-main.cpp.o +/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT CMakeFiles/tortoize.dir/src/tortoize-main.cpp.o -MF CMakeFiles/tortoize.dir/src/tortoize-main.cpp.o.d -o CMakeFiles/tortoize.dir/src/tortoize-main.cpp.o -c /build/reproducible-path/tortoize-2.0.15/src/tortoize-main.cpp +[ 92%] Linking CXX executable tortoize-unit-test cd /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/tortoize-unit-test.dir/link.txt --verbose=1 +[100%] Linking CXX executable tortoize +/usr/bin/cmake -E cmake_link_script CMakeFiles/tortoize.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tortoize-unit-test.dir/link.d "CMakeFiles/tortoize-unit-test.dir/tortoize-unit-test.cpp.o" "CMakeFiles/tortoize-unit-test.dir/__/src/dssp.cpp.o" "CMakeFiles/tortoize-unit-test.dir/__/src/dssp-io.cpp.o" "CMakeFiles/tortoize-unit-test.dir/__/src/tortoize.cpp.o" "mrc-tortoize-unit-test.dir/rsrc.obj" -o tortoize-unit-test /usr/lib/aarch64-linux-gnu/libcifpp.so.7.0.9 /usr/lib/libCatch2.a /usr/lib/aarch64-linux-gnu/libz.so make[3]: Leaving directory '/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu' +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tortoize.dir/link.d CMakeFiles/tortoize.dir/src/dssp.cpp.o "CMakeFiles/tortoize.dir/src/dssp-io.cpp.o" CMakeFiles/tortoize.dir/src/tortoize.cpp.o "CMakeFiles/tortoize.dir/src/tortoize-main.cpp.o" "mrc-tortoize.dir/rsrc.obj" -o tortoize /usr/lib/aarch64-linux-gnu/libcifpp.so.7.0.9 /usr/lib/aarch64-linux-gnu/libz.so +make[3]: Leaving directory '/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu' [100%] Built target tortoize-unit-test +[100%] Built target tortoize make[2]: Leaving directory '/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu' @@ -678,7 +714,7 @@ 1: The current order of compound factory objects is: 1: 1: CCD components.cif resource -1: Randomness seeded to: 1767250001 +1: Randomness seeded to: 2496921437 1: Unknown compound: ALA 1: Unknown compound: ARG 1: Unknown compound: ASN @@ -724,11 +760,11 @@ 1: =============================================================================== 1: All tests passed (4 assertions in 1 test case) 1: -1/1 Test #1: tortoize-unit-test ............... Passed 0.26 sec +1/1 Test #1: tortoize-unit-test ............... Passed 0.50 sec 100% tests passed, 0 tests failed out of 1 -Total Test time (real) = 0.26 sec +Total Test time (real) = 0.51 sec make[1]: Leaving directory '/build/reproducible-path/tortoize-2.0.15/obj-aarch64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep @@ -776,12 +812,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/794752/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/794752/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1417557 and its subdirectories -I: Current time: Tue May 5 11:57:18 -12 2026 -I: pbuilder-time-stamp: 1778025438 +I: removing directory /srv/workspace/pbuilder/794752 and its subdirectories +I: Current time: Thu Apr 3 07:36:30 +14 2025 +I: pbuilder-time-stamp: 1743615390