Diff of the two buildlogs: -- --- b1/build.log 2024-11-23 06:46:48.850495622 +0000 +++ b2/build.log 2024-11-23 06:52:00.444441117 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Nov 22 18:25:32 -12 2024 -I: pbuilder-time-stamp: 1732343132 +I: Current time: Sat Nov 23 20:47:12 +14 2024 +I: pbuilder-time-stamp: 1732344432 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying fix_pkg-config.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/19137/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/4540/tmp/hooks/D01_modify_environment starting +debug: Running on virt64b. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 23 06:47 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/4540/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/4540/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='2f4d45611ba04a8aa732176de9847f5e' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='19137' - PS1='# ' - PS2='> ' + INVOCATION_ID=72f9b0c64b8a4394b9208ae34dd030ab + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=4540 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.BtZYnYfI/pbuilderrc_c3Ir --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.BtZYnYfI/b1 --logfile b1/build.log clipper_2.1.20201109-2.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.BtZYnYfI/pbuilderrc_ILhy --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.BtZYnYfI/b2 --logfile b2/build.log clipper_2.1.20201109-2.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux wbq0 6.1.0-27-armmp #1 SMP Debian 6.1.115-1 (2024-11-01) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-27-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/19137/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/4540/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -177,7 +209,7 @@ Get: 52 http://deb.debian.org/debian unstable/main armhf libmmdb2-dev armhf 2.0.22-1+b2 [92.9 kB] Get: 53 http://deb.debian.org/debian unstable/main armhf sfftw2 armhf 2.1.5-7 [190 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf sfftw-dev armhf 2.1.5-7 [221 kB] -Fetched 85.6 MB in 10s (8345 kB/s) +Fetched 85.6 MB in 2s (54.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19686 files and directories currently installed.) @@ -410,7 +442,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/clipper-2.1.20201109/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../clipper_2.1.20201109-2_source.changes +I: user script /srv/workspace/pbuilder/4540/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/4540/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/clipper-2.1.20201109/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../clipper_2.1.20201109-2_source.changes dpkg-buildpackage: info: source package clipper dpkg-buildpackage: info: source version 2.1.20201109-2 dpkg-buildpackage: info: source distribution unstable @@ -773,9 +809,9 @@ /build/reproducible-path/clipper-2.1.20201109/dox/clipper_minimol.dox:1: warning: found more than one \mainpage comment block! (first occurrence: /build/reproducible-path/clipper-2.1.20201109/dox/clipper.dox, line 1), Skipping current block! /build/reproducible-path/clipper-2.1.20201109/dox/clipper_mmdb.dox:1: warning: found more than one \mainpage comment block! (first occurrence: /build/reproducible-path/clipper-2.1.20201109/dox/clipper.dox, line 1), Skipping current block! /build/reproducible-path/clipper-2.1.20201109/dox/clipper_mmdbold.dox:1: warning: found more than one \mainpage comment block! (first occurrence: /build/reproducible-path/clipper-2.1.20201109/dox/clipper.dox, line 1), Skipping current block! -sh: 1: latex: not found +sh: line 1: latex: command not found error: Problems running latex. Check your installation or look for typos in _formulas.tex and check _formulas.log! -sh: 1: latex: not found +sh: line 1: latex: command not found error: Problems running latex. Check your installation or look for typos in _formulas_dark.tex and check _formulas_dark.log! /build/reproducible-path/clipper-2.1.20201109/dox/develop.dox:167: warning: Illegal command \width found as part of a image /build/reproducible-path/clipper-2.1.20201109/dox/installation.dox:18: warning: included file install.csh is not found. Check your EXAMPLE_PATH @@ -888,7 +924,7 @@ parameter 'type' make[1]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109' dh_auto_build "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" -Nlibclipper-doc - make -j3 + make -j4 make[1]: Entering directory '/build/reproducible-path/clipper-2.1.20201109' make all-recursive make[2]: Entering directory '/build/reproducible-path/clipper-2.1.20201109' @@ -896,24 +932,32 @@ make[3]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper' Making all in core make[4]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper/core' -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-atomsf.lo `test -f 'atomsf.cpp' || echo './'`atomsf.cpp -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-coords.lo `test -f 'coords.cpp' || echo './'`coords.cpp -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-nxmap_operator.lo `test -f 'nxmap_operator.cpp' || echo './'`nxmap_operator.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-atomsf.lo `test -f 'atomsf.cpp' || echo './'`atomsf.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-coords.lo `test -f 'coords.cpp' || echo './'`coords.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-nxmap_operator.lo `test -f 'nxmap_operator.cpp' || echo './'`nxmap_operator.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-cell.lo `test -f 'cell.cpp' || echo './'`cell.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c coords.cpp -fPIC -DPIC -o .libs/libclipper_core_la-coords.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c atomsf.cpp -fPIC -DPIC -o .libs/libclipper_core_la-atomsf.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c cell.cpp -fPIC -DPIC -o .libs/libclipper_core_la-cell.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c nxmap_operator.cpp -fPIC -DPIC -o .libs/libclipper_core_la-nxmap_operator.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, - from coords.cpp:43: + from atomsf.h:50, + from atomsf.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, - from atomsf.h:50, - from atomsf.cpp:43: + from coords.cpp:43: +clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 + 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } + | ^~~~~~~~ +In file included from clipper_types.h:49, + from cell.h:50, + from cell.cpp:44: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ @@ -959,19 +1003,23 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-cell.lo `test -f 'cell.cpp' || echo './'`cell.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-derivs.lo `test -f 'derivs.cpp' || echo './'`derivs.cpp In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'bool clipper::AtomShapeFn::rho_curv(const clipper::Coord_orth&, clipper::ftype&, std::vector&, clipper::Matrix&) const' at atomsf.cpp:676:51: /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c cell.cpp -fPIC -DPIC -o .libs/libclipper_core_la-cell.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c derivs.cpp -fPIC -DPIC -o .libs/libclipper_core_la-derivs.o +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-ramachandran.lo `test -f 'ramachandran.cpp' || echo './'`ramachandran.cpp In file included from clipper_types.h:49, from cell.h:50, - from cell.cpp:44: + from coords.h:49, + from derivs.h:49, + from derivs.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c ramachandran.cpp -fPIC -DPIC -o .libs/libclipper_core_la-ramachandran.o In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'bool clipper::AtomShapeFn::rho_grad(const clipper::Coord_orth&, clipper::ftype&, std::vector&) const' at atomsf.cpp:593:51: /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 @@ -982,13 +1030,32 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-derivs.lo `test -f 'derivs.cpp' || echo './'`derivs.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c derivs.cpp -fPIC -DPIC -o .libs/libclipper_core_la-derivs.o +In file included from clipper_types.h:49, + from ramachandran.h:49, + from ramachandran.cpp:43: +clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 + 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } + | ^~~~~~~~ +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_instance.lo `test -f 'clipper_instance.cpp' || echo './'`clipper_instance.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c clipper_instance.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_instance.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, - from derivs.h:49, - from derivs.cpp:43: + from hkl_lookup.h:49, + from hkl_info.h:49, + from hkl_data.h:49, + from clipper_instance.h:49, + from clipper_instance.cpp:43: +clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 + 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } + | ^~~~~~~~ +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-fftmap.lo `test -f 'fftmap.cpp' || echo './'`fftmap.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c fftmap.cpp -fPIC -DPIC -o .libs/libclipper_core_la-fftmap.o +In file included from clipper_types.h:49, + from cell.h:50, + from coords.h:49, + from fftmap.h:49, + from fftmap.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ @@ -999,8 +1066,6 @@ /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-ramachandran.lo `test -f 'ramachandran.cpp' || echo './'`ramachandran.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c ramachandran.cpp -fPIC -DPIC -o .libs/libclipper_core_la-ramachandran.o In file included from /usr/include/c++/14/vector:66: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at clipper_types.h:379:40, @@ -1009,12 +1074,6 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from clipper_types.h:49, - from ramachandran.h:49, - from ramachandran.cpp:43: -clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 - 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } - | ^~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at clipper_types.h:406:27, @@ -1029,29 +1088,6 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_instance.lo `test -f 'clipper_instance.cpp' || echo './'`clipper_instance.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c clipper_instance.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_instance.o -In file included from clipper_types.h:49, - from cell.h:50, - from coords.h:49, - from hkl_lookup.h:49, - from hkl_info.h:49, - from hkl_data.h:49, - from clipper_instance.h:49, - from clipper_instance.cpp:43: -clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 - 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } - | ^~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-fftmap.lo `test -f 'fftmap.cpp' || echo './'`fftmap.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c fftmap.cpp -fPIC -DPIC -o .libs/libclipper_core_la-fftmap.o -In file included from clipper_types.h:49, - from cell.h:50, - from coords.h:49, - from fftmap.h:49, - from fftmap.cpp:43: -clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 - 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } - | ^~~~~~~~ In file included from /usr/include/c++/14/vector:72, from clipper_memory.h:50, from clipper_types.h:50: @@ -1065,7 +1101,7 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-resol_basisfn.lo `test -f 'resol_basisfn.cpp' || echo './'`resol_basisfn.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-resol_basisfn.lo `test -f 'resol_basisfn.cpp' || echo './'`resol_basisfn.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c resol_basisfn.cpp -fPIC -DPIC -o .libs/libclipper_core_la-resol_basisfn.o In file included from clipper_types.h:49, from cell.h:50, @@ -1079,9 +1115,9 @@ clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_memory.lo `test -f 'clipper_memory.cpp' || echo './'`clipper_memory.cpp -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-fftmap_sparse.lo `test -f 'fftmap_sparse.cpp' || echo './'`fftmap_sparse.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_memory.lo `test -f 'clipper_memory.cpp' || echo './'`clipper_memory.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c clipper_memory.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_memory.o +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-fftmap_sparse.lo `test -f 'fftmap_sparse.cpp' || echo './'`fftmap_sparse.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c fftmap_sparse.cpp -fPIC -DPIC -o .libs/libclipper_core_la-fftmap_sparse.o In file included from clipper_types.h:49, from cell.h:50, @@ -1092,7 +1128,7 @@ clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-resol_fn.lo `test -f 'resol_fn.cpp' || echo './'`resol_fn.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-resol_fn.lo `test -f 'resol_fn.cpp' || echo './'`resol_fn.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c resol_fn.cpp -fPIC -DPIC -o .libs/libclipper_core_la-resol_fn.o In file included from clipper_types.h:49, from cell.h:50, @@ -1105,9 +1141,9 @@ clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_message.lo `test -f 'clipper_message.cpp' || echo './'`clipper_message.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_message.lo `test -f 'clipper_message.cpp' || echo './'`clipper_message.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c clipper_message.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_message.o -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_compute.lo `test -f 'hkl_compute.cpp' || echo './'`hkl_compute.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_compute.lo `test -f 'hkl_compute.cpp' || echo './'`hkl_compute.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c hkl_compute.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_compute.o In file included from clipper_types.h:49, from cell.h:50, @@ -1121,21 +1157,6 @@ clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-resol_targetfn.lo `test -f 'resol_targetfn.cpp' || echo './'`resol_targetfn.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c resol_targetfn.cpp -fPIC -DPIC -o .libs/libclipper_core_la-resol_targetfn.o -In file included from clipper_types.h:49, - from cell.h:50, - from coords.h:49, - from hkl_lookup.h:49, - from hkl_info.h:49, - from hkl_data.h:49, - from resol_fn.h:48, - from resol_basisfn.h:48, - from resol_targetfn.h:48, - from resol_targetfn.cpp:43: -clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 - 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } - | ^~~~~~~~ In file included from /usr/include/c++/14/vector:72, from clipper_memory.h:50, from clipper_types.h:50: @@ -1163,6 +1184,7 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-resol_targetfn.lo `test -f 'resol_targetfn.cpp' || echo './'`resol_targetfn.cpp In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&) [with T = double]' at clipper_types.h:376:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&) [with T = double]' at clipper_types.h:403:27, @@ -1182,15 +1204,29 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_stats.lo `test -f 'clipper_stats.cpp' || echo './'`clipper_stats.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_stats.lo `test -f 'clipper_stats.cpp' || echo './'`clipper_stats.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c resol_targetfn.cpp -fPIC -DPIC -o .libs/libclipper_core_la-resol_targetfn.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c clipper_stats.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_stats.o In file included from clipper_types.h:49, + from cell.h:50, + from coords.h:49, + from hkl_lookup.h:49, + from hkl_info.h:49, + from hkl_data.h:49, + from resol_fn.h:48, + from resol_basisfn.h:48, + from resol_targetfn.h:48, + from resol_targetfn.cpp:43: +clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 + 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } + | ^~~~~~~~ +In file included from clipper_types.h:49, from clipper_stats.h:49, from clipper_stats.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_data.lo `test -f 'hkl_data.cpp' || echo './'`hkl_data.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_data.lo `test -f 'hkl_data.cpp' || echo './'`hkl_data.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c hkl_data.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_data.o In file included from clipper_types.h:49, from cell.h:50, @@ -1202,14 +1238,6 @@ clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-rotation.lo `test -f 'rotation.cpp' || echo './'`rotation.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c rotation.cpp -fPIC -DPIC -o .libs/libclipper_core_la-rotation.o -In file included from clipper_types.h:49, - from rotation.h:49, - from rotation.cpp:43: -clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 - 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } - | ^~~~~~~~ In file included from /usr/include/c++/14/vector:72, from clipper_memory.h:50, from clipper_types.h:50: @@ -1228,7 +1256,15 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_test.lo `test -f 'clipper_test.cpp' || echo './'`clipper_test.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-rotation.lo `test -f 'rotation.cpp' || echo './'`rotation.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c rotation.cpp -fPIC -DPIC -o .libs/libclipper_core_la-rotation.o +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_test.lo `test -f 'clipper_test.cpp' || echo './'`clipper_test.cpp +In file included from clipper_types.h:49, + from rotation.h:49, + from rotation.cpp:43: +clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 + 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } + | ^~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c clipper_test.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_test.o In file included from clipper_types.h:49, from clipper_test.h:49, @@ -1236,10 +1272,22 @@ clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_datatypes.lo `test -f 'hkl_datatypes.cpp' || echo './'`hkl_datatypes.cpp -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-spacegroup.lo `test -f 'spacegroup.cpp' || echo './'`spacegroup.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_datatypes.lo `test -f 'hkl_datatypes.cpp' || echo './'`hkl_datatypes.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c hkl_datatypes.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_datatypes.o +In file included from clipper_types.h:49, + from cell.h:50, + from coords.h:49, + from hkl_lookup.h:49, + from hkl_info.h:49, + from hkl_data.h:49, + from hkl_datatypes.h:49, + from hkl_datatypes.cpp:43: +clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 + 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } + | ^~~~~~~~ +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-spacegroup.lo `test -f 'spacegroup.cpp' || echo './'`spacegroup.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c spacegroup.cpp -fPIC -DPIC -o .libs/libclipper_core_la-spacegroup.o +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_types.lo `test -f 'clipper_types.cpp' || echo './'`clipper_types.cpp In file included from clipper_types.h:49, from symop.h:49, from spacegroup.h:50, @@ -1247,21 +1295,38 @@ clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c clipper_types.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_types.o +In file included from clipper_types.h:49, + from clipper_types.cpp:43: +clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 + 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } + | ^~~~~~~~ +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_info.lo `test -f 'hkl_info.cpp' || echo './'`hkl_info.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c hkl_info.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_info.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, - from hkl_data.h:49, - from hkl_datatypes.h:49, - from hkl_datatypes.cpp:43: + from hkl_info.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_types.lo `test -f 'clipper_types.cpp' || echo './'`clipper_types.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c clipper_types.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_types.o +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-spacegroup_data.lo `test -f 'spacegroup_data.cpp' || echo './'`spacegroup_data.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c spacegroup_data.cpp -fPIC -DPIC -o .libs/libclipper_core_la-spacegroup_data.o +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_util.lo `test -f 'clipper_util.cpp' || echo './'`clipper_util.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c clipper_util.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_util.o +In file included from clipper_util.cpp:43: +clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 + 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } + | ^~~~~~~~ +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_lookup.lo `test -f 'hkl_lookup.cpp' || echo './'`hkl_lookup.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c hkl_lookup.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_lookup.o In file included from clipper_types.h:49, - from clipper_types.cpp:43: + from cell.h:50, + from coords.h:49, + from hkl_lookup.h:49, + from hkl_lookup.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ @@ -1309,35 +1374,6 @@ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_info.lo `test -f 'hkl_info.cpp' || echo './'`hkl_info.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c hkl_info.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_info.o -In file included from clipper_types.h:49, - from cell.h:50, - from coords.h:49, - from hkl_lookup.h:49, - from hkl_info.h:49, - from hkl_info.cpp:43: -clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 - 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } - | ^~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-spacegroup_data.lo `test -f 'spacegroup_data.cpp' || echo './'`spacegroup_data.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c spacegroup_data.cpp -fPIC -DPIC -o .libs/libclipper_core_la-spacegroup_data.o -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_util.lo `test -f 'clipper_util.cpp' || echo './'`clipper_util.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c clipper_util.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_util.o -In file included from clipper_util.cpp:43: -clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 - 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } - | ^~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_lookup.lo `test -f 'hkl_lookup.cpp' || echo './'`hkl_lookup.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c hkl_lookup.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_lookup.o -In file included from clipper_types.h:49, - from cell.h:50, - from coords.h:49, - from hkl_lookup.h:49, - from hkl_lookup.cpp:43: -clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 - 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } - | ^~~~~~~~ In file included from /usr/include/c++/14/vector:72, from clipper_memory.h:50, from clipper_types.h:50: @@ -1345,7 +1381,6 @@ /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-symop.lo `test -f 'symop.cpp' || echo './'`symop.cpp In file included from /usr/include/c++/14/vector:66: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&) [with T = double]' at clipper_types.h:376:40, @@ -1359,13 +1394,7 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c symop.cpp -fPIC -DPIC -o .libs/libclipper_core_la-symop.o -In file included from clipper_types.h:49, - from symop.h:49, - from symop.cpp:43: -clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 - 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } - | ^~~~~~~~ +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-symop.lo `test -f 'symop.cpp' || echo './'`symop.cpp In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at clipper_types.h:406:27, @@ -1373,8 +1402,16 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-container.lo `test -f 'container.cpp' || echo './'`container.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c symop.cpp -fPIC -DPIC -o .libs/libclipper_core_la-symop.o +In file included from clipper_types.h:49, + from symop.h:49, + from symop.cpp:43: +clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 + 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } + | ^~~~~~~~ +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-container.lo `test -f 'container.cpp' || echo './'`container.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c container.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container.o +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_operators.lo `test -f 'hkl_operators.cpp' || echo './'`hkl_operators.cpp In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, @@ -1383,7 +1420,6 @@ clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_operators.lo `test -f 'hkl_operators.cpp' || echo './'`hkl_operators.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c hkl_operators.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_operators.o In file included from clipper_types.h:49, from cell.h:50, @@ -1397,7 +1433,7 @@ clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-container_hkl.lo `test -f 'container_hkl.cpp' || echo './'`container_hkl.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-container_hkl.lo `test -f 'container_hkl.cpp' || echo './'`container_hkl.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c container_hkl.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container_hkl.o In file included from clipper_types.h:49, from cell.h:50, @@ -1409,7 +1445,7 @@ clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-map_interp.lo `test -f 'map_interp.cpp' || echo './'`map_interp.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-map_interp.lo `test -f 'map_interp.cpp' || echo './'`map_interp.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c map_interp.cpp -fPIC -DPIC -o .libs/libclipper_core_la-map_interp.o In file included from clipper_types.h:49, from cell.h:50, @@ -1420,7 +1456,7 @@ clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-container_map.lo `test -f 'container_map.cpp' || echo './'`container_map.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-container_map.lo `test -f 'container_map.cpp' || echo './'`container_map.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c container_map.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container_map.o In file included from clipper_types.h:49, from cell.h:50, @@ -1432,7 +1468,7 @@ clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-map_utils.lo `test -f 'map_utils.cpp' || echo './'`map_utils.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-map_utils.lo `test -f 'map_utils.cpp' || echo './'`map_utils.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c map_utils.cpp -fPIC -DPIC -o .libs/libclipper_core_la-map_utils.o In file included from clipper_types.h:49, from cell.h:50, @@ -1443,7 +1479,7 @@ clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-xmap.lo `test -f 'xmap.cpp' || echo './'`xmap.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-xmap.lo `test -f 'xmap.cpp' || echo './'`xmap.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c xmap.cpp -fPIC -DPIC -o .libs/libclipper_core_la-xmap.o In file included from clipper_types.h:49, from cell.h:50, @@ -1454,6 +1490,29 @@ clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-container_types.lo `test -f 'container_types.cpp' || echo './'`container_types.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c container_types.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container_types.o +In file included from clipper_types.h:49, + from cell.h:50, + from coords.h:49, + from container.h:49, + from container_types.h:49, + from container_types.cpp:42: +clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 + 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } + | ^~~~~~~~ +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-nxmap.lo `test -f 'nxmap.cpp' || echo './'`nxmap.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c nxmap.cpp -fPIC -DPIC -o .libs/libclipper_core_la-nxmap.o +In file included from clipper_types.h:49, + from cell.h:50, + from coords.h:49, + from derivs.h:49, + from nxmap.h:49, + from nxmap.cpp:43: +clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 + 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } + | ^~~~~~~~ +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_thread.lo `test -f 'clipper_thread.cpp' || echo './'`clipper_thread.cpp In file included from /usr/include/c++/14/vector:72, from clipper_memory.h:50, from clipper_types.h:50: @@ -1461,6 +1520,7 @@ /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c clipper_thread.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_thread.o In file included from /usr/include/c++/14/vector:66: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'clipper::LogPhaseProb::LogPhaseProb(const clipper::HKL_class&) [with int N = 360]' at hkl_operators.cpp:241:13: @@ -1502,7 +1562,17 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-container_types.lo `test -f 'container_types.cpp' || echo './'`container_types.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-test_core.lo `test -f 'test_core.cpp' || echo './'`test_core.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c test_core.cpp -fPIC -DPIC -o .libs/libclipper_core_la-test_core.o +In file included from clipper_types.h:49, + from clipper_test.h:49, + from test_core.h:49, + from test_core.cpp:43: +clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 + 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } + | ^~~~~~~~ +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-test_data.lo `test -f 'test_data.cpp' || echo './'`test_data.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c test_data.cpp -fPIC -DPIC -o .libs/libclipper_core_la-test_data.o /usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::datatypes::F_phi; _Alloc = std::allocator >]': /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 700 | vector<_Tp, _Alloc>:: @@ -1512,13 +1582,15 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c container_types.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container_types.o In file included from clipper_types.h:49, from cell.h:50, from coords.h:49, - from container.h:49, - from container_types.h:49, - from container_types.cpp:42: + from hkl_lookup.h:49, + from hkl_info.h:49, + from hkl_data.h:49, + from hkl_datatypes.h:49, + from test_data.h:49, + from test_data.cpp:43: clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ @@ -1531,42 +1603,6 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-nxmap.lo `test -f 'nxmap.cpp' || echo './'`nxmap.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c nxmap.cpp -fPIC -DPIC -o .libs/libclipper_core_la-nxmap.o -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_thread.lo `test -f 'clipper_thread.cpp' || echo './'`clipper_thread.cpp -In file included from clipper_types.h:49, - from cell.h:50, - from coords.h:49, - from derivs.h:49, - from nxmap.h:49, - from nxmap.cpp:43: -clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 - 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } - | ^~~~~~~~ -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c clipper_thread.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_thread.o -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-test_core.lo `test -f 'test_core.cpp' || echo './'`test_core.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c test_core.cpp -fPIC -DPIC -o .libs/libclipper_core_la-test_core.o -In file included from clipper_types.h:49, - from clipper_test.h:49, - from test_core.h:49, - from test_core.cpp:43: -clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 - 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } - | ^~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-test_data.lo `test -f 'test_data.cpp' || echo './'`test_data.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c test_data.cpp -fPIC -DPIC -o .libs/libclipper_core_la-test_data.o -In file included from clipper_types.h:49, - from cell.h:50, - from coords.h:49, - from hkl_lookup.h:49, - from hkl_info.h:49, - from hkl_data.h:49, - from hkl_datatypes.h:49, - from test_data.h:49, - from test_data.cpp:43: -clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 - 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } - | ^~~~~~~~ In file included from /usr/include/c++/14/vector:65, from clipper_memory.h:50, from clipper_types.h:50: @@ -1575,25 +1611,6 @@ 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -In file included from /usr/include/c++/14/vector:72, - from clipper_memory.h:50, - from clipper_types.h:50: -/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 700 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/14/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void clipper::Xmap::init(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]' at xmap.h:364:156: -/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1058 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void clipper::Xmap::init(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]' at xmap.h:364:156, - inlined from 'clipper::Xmap::Xmap(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]' at xmap.h:362:97: -/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1058 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*; bool _TrivialValueTypes = false]', inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*; _Tp = clipper::Atom]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, @@ -1640,6 +1657,25 @@ /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/14/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void clipper::Xmap::init(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]' at xmap.h:364:156: +/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1058 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void clipper::Xmap::init(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]' at xmap.h:364:156, + inlined from 'clipper::Xmap::Xmap(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]' at xmap.h:362:97: +/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1058 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/14/vector:72, + from clipper_memory.h:50, + from clipper_types.h:50: +/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 700 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/14/bits/stl_algo.h:4771:18, inlined from 'bool clipper::Test_core::operator()()' at test_core.cpp:152:14: @@ -1685,7 +1721,7 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o libclipper-core.la -rpath /usr/lib/arm-linux-gnueabihf libclipper_core_la-atomsf.lo libclipper_core_la-coords.lo libclipper_core_la-nxmap_operator.lo libclipper_core_la-cell.lo libclipper_core_la-derivs.lo libclipper_core_la-ramachandran.lo libclipper_core_la-clipper_instance.lo libclipper_core_la-fftmap.lo libclipper_core_la-resol_basisfn.lo libclipper_core_la-clipper_memory.lo libclipper_core_la-fftmap_sparse.lo libclipper_core_la-resol_fn.lo libclipper_core_la-clipper_message.lo libclipper_core_la-hkl_compute.lo libclipper_core_la-resol_targetfn.lo libclipper_core_la-clipper_stats.lo libclipper_core_la-hkl_data.lo libclipper_core_la-rotation.lo libclipper_core_la-clipper_test.lo libclipper_core_la-hkl_datatypes.lo libclipper_core_la-spacegroup.lo libclipper_core_la-clipper_types.lo libclipper_core_la-hkl_info.lo libclipper_core_la-spacegroup_data.lo libclipper_core_la-clipper_util.lo libclipper_core_la-hkl_lookup.lo libclipper_core_la-symop.lo libclipper_core_la-container.lo libclipper_core_la-hkl_operators.lo libclipper_core_la-container_hkl.lo libclipper_core_la-map_interp.lo libclipper_core_la-container_map.lo libclipper_core_la-map_utils.lo libclipper_core_la-xmap.lo libclipper_core_la-container_types.lo libclipper_core_la-nxmap.lo libclipper_core_la-clipper_thread.lo libclipper_core_la-test_core.lo libclipper_core_la-test_data.lo -lsrfftw -lsfftw -lpthread -lm +/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o libclipper-core.la -rpath /usr/lib/arm-linux-gnueabihf libclipper_core_la-atomsf.lo libclipper_core_la-coords.lo libclipper_core_la-nxmap_operator.lo libclipper_core_la-cell.lo libclipper_core_la-derivs.lo libclipper_core_la-ramachandran.lo libclipper_core_la-clipper_instance.lo libclipper_core_la-fftmap.lo libclipper_core_la-resol_basisfn.lo libclipper_core_la-clipper_memory.lo libclipper_core_la-fftmap_sparse.lo libclipper_core_la-resol_fn.lo libclipper_core_la-clipper_message.lo libclipper_core_la-hkl_compute.lo libclipper_core_la-resol_targetfn.lo libclipper_core_la-clipper_stats.lo libclipper_core_la-hkl_data.lo libclipper_core_la-rotation.lo libclipper_core_la-clipper_test.lo libclipper_core_la-hkl_datatypes.lo libclipper_core_la-spacegroup.lo libclipper_core_la-clipper_types.lo libclipper_core_la-hkl_info.lo libclipper_core_la-spacegroup_data.lo libclipper_core_la-clipper_util.lo libclipper_core_la-hkl_lookup.lo libclipper_core_la-symop.lo libclipper_core_la-container.lo libclipper_core_la-hkl_operators.lo libclipper_core_la-container_hkl.lo libclipper_core_la-map_interp.lo libclipper_core_la-container_map.lo libclipper_core_la-map_utils.lo libclipper_core_la-xmap.lo libclipper_core_la-container_types.lo libclipper_core_la-nxmap.lo libclipper_core_la-clipper_thread.lo libclipper_core_la-test_core.lo libclipper_core_la-test_data.lo -lsrfftw -lsfftw -lpthread -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/14/crtbeginS.o .libs/libclipper_core_la-atomsf.o .libs/libclipper_core_la-coords.o .libs/libclipper_core_la-nxmap_operator.o .libs/libclipper_core_la-cell.o .libs/libclipper_core_la-derivs.o .libs/libclipper_core_la-ramachandran.o .libs/libclipper_core_la-clipper_instance.o .libs/libclipper_core_la-fftmap.o .libs/libclipper_core_la-resol_basisfn.o .libs/libclipper_core_la-clipper_memory.o .libs/libclipper_core_la-fftmap_sparse.o .libs/libclipper_core_la-resol_fn.o .libs/libclipper_core_la-clipper_message.o .libs/libclipper_core_la-hkl_compute.o .libs/libclipper_core_la-resol_targetfn.o .libs/libclipper_core_la-clipper_stats.o .libs/libclipper_core_la-hkl_data.o .libs/libclipper_core_la-rotation.o .libs/libclipper_core_la-clipper_test.o .libs/libclipper_core_la-hkl_datatypes.o .libs/libclipper_core_la-spacegroup.o .libs/libclipper_core_la-clipper_types.o .libs/libclipper_core_la-hkl_info.o .libs/libclipper_core_la-spacegroup_data.o .libs/libclipper_core_la-clipper_util.o .libs/libclipper_core_la-hkl_lookup.o .libs/libclipper_core_la-symop.o .libs/libclipper_core_la-container.o .libs/libclipper_core_la-hkl_operators.o .libs/libclipper_core_la-container_hkl.o .libs/libclipper_core_la-map_interp.o .libs/libclipper_core_la-container_map.o .libs/libclipper_core_la-map_utils.o .libs/libclipper_core_la-xmap.o .libs/libclipper_core_la-container_types.o .libs/libclipper_core_la-nxmap.o .libs/libclipper_core_la-clipper_thread.o .libs/libclipper_core_la-test_core.o .libs/libclipper_core_la-test_data.o -lsrfftw -lsfftw -lpthread -L/usr/lib/gcc/arm-linux-gnueabihf/14 -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/14/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-core.so.2 -o .libs/libclipper-core.so.2.0.1 libtool: link: (cd ".libs" && rm -f "libclipper-core.so.2" && ln -s "libclipper-core.so.2.0.1" "libclipper-core.so.2") libtool: link: (cd ".libs" && rm -f "libclipper-core.so" && ln -s "libclipper-core.so.2.0.1" "libclipper-core.so") @@ -1693,12 +1729,14 @@ make[4]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/clipper/core' Making all in contrib make[4]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper/contrib' -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o convolution_search.lo convolution_search.cpp -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o sfcalc.lo sfcalc.cpp -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o edcalc.lo edcalc.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o convolution_search.lo convolution_search.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o sfcalc.lo sfcalc.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o edcalc.lo edcalc.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o sfcalc_obs.lo sfcalc_obs.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c convolution_search.cpp -fPIC -DPIC -o .libs/convolution_search.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c edcalc.cpp -fPIC -DPIC -o .libs/edcalc.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c sfcalc.cpp -fPIC -DPIC -o .libs/sfcalc.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c edcalc.cpp -fPIC -DPIC -o .libs/edcalc.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c sfcalc_obs.cpp -fPIC -DPIC -o .libs/sfcalc_obs.o In file included from ../core/clipper_types.h:49, from ../core/cell.h:50, from ../core/coords.h:49, @@ -1707,8 +1745,8 @@ from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, - from edcalc.h:50, - from edcalc.cpp:43: + from sfcalc.h:50, + from sfcalc.cpp:43: ../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ @@ -1733,28 +1771,11 @@ from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, - from sfcalc.h:50, - from sfcalc.cpp:43: + from edcalc.h:50, + from edcalc.cpp:43: ../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ -In file included from /usr/include/c++/14/vector:72, - from ../core/clipper_memory.h:50, - from ../core/clipper_types.h:50: -/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 700 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/14/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void clipper::NXmap::init(const clipper::Cell&, const clipper::Grid_sampling&, const clipper::Grid_range&) [with T = double]' at ../core/nxmap.h:367:63, - inlined from 'clipper::NXmap::NXmap(const clipper::Cell&, const clipper::Grid_sampling&, const clipper::Grid_range&) [with T = double]' at ../core/nxmap.h:349:11, - inlined from 'bool clipper::Convolution_search_slow::operator()(clipper::Xmap&, const clipper::NXmap&, const clipper::NX_operator&) const [with T = double]' at convolution_search.cpp:81:12: -/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1058 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o sfcalc_obs.lo sfcalc_obs.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c sfcalc_obs.cpp -fPIC -DPIC -o .libs/sfcalc_obs.o In file included from ../core/clipper_types.h:49, from ../core/cell.h:50, from ../core/coords.h:49, @@ -1768,36 +1789,13 @@ ../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o fffear.lo fffear.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c fffear.cpp -fPIC -DPIC -o .libs/fffear.o -In file included from ../core/clipper_types.h:49, - from ../core/cell.h:50, - from ../core/coords.h:49, - from ../core/hkl_lookup.h:49, - from ../core/hkl_info.h:49, - from ../core/hkl_data.h:49, - from ../core/hkl_datatypes.h:49, - from function_object_bases.h:50, - from fffear.h:50, - from fffear.cpp:42: -../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 - 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } - | ^~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o sfscale.lo sfscale.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c sfscale.cpp -fPIC -DPIC -o .libs/sfscale.o -In file included from ../core/clipper_types.h:49, - from ../core/cell.h:50, - from ../core/coords.h:49, - from ../core/hkl_lookup.h:49, - from ../core/hkl_info.h:49, - from ../core/hkl_data.h:49, - from ../core/hkl_datatypes.h:49, - from function_object_bases.h:50, - from sfscale.h:49, - from sfscale.cpp:43: -../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 - 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } - | ^~~~~~~~ +In file included from /usr/include/c++/14/vector:72, + from ../core/clipper_memory.h:50, + from ../core/clipper_types.h:50: +/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 700 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/vector:72, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50: @@ -1811,6 +1809,14 @@ 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +In file included from /usr/include/c++/14/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void clipper::NXmap::init(const clipper::Cell&, const clipper::Grid_sampling&, const clipper::Grid_range&) [with T = double]' at ../core/nxmap.h:367:63, + inlined from 'clipper::NXmap::NXmap(const clipper::Cell&, const clipper::Grid_sampling&, const clipper::Grid_range&) [with T = double]' at ../core/nxmap.h:349:11, + inlined from 'bool clipper::Convolution_search_slow::operator()(clipper::Xmap&, const clipper::NXmap&, const clipper::NX_operator&) const [with T = double]' at convolution_search.cpp:81:12: +/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1058 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*; bool _TrivialValueTypes = false]', inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*; _Tp = clipper::Atom]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, @@ -1831,15 +1837,32 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o fffear.lo fffear.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c fffear.cpp -fPIC -DPIC -o .libs/fffear.o +In file included from ../core/clipper_types.h:49, + from ../core/cell.h:50, + from ../core/coords.h:49, + from ../core/hkl_lookup.h:49, + from ../core/hkl_info.h:49, + from ../core/hkl_data.h:49, + from ../core/hkl_datatypes.h:49, + from function_object_bases.h:50, + from fffear.h:50, + from fffear.cpp:42: +../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 + 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } + | ^~~~~~~~ /usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::datatypes::F_phi; _Alloc = std::allocator >]': /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o sfscale.lo sfscale.cpp In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::datatypes::F_phi; _Alloc = std::allocator >]', inlined from 'void clipper::HKL_data::update() [with T = clipper::datatypes::F_phi]' at ../core/hkl_data.h:413:18: /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c sfscale.cpp -fPIC -DPIC -o .libs/sfscale.o In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*; bool _TrivialValueTypes = false]', inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::Atom*; _Tp = clipper::Atom]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, @@ -1859,15 +1882,21 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o function_object_bases.lo function_object_bases.cpp +In file included from ../core/clipper_types.h:49, + from ../core/cell.h:50, + from ../core/coords.h:49, + from ../core/hkl_lookup.h:49, + from ../core/hkl_info.h:49, + from ../core/hkl_data.h:49, + from ../core/hkl_datatypes.h:49, + from function_object_bases.h:50, + from sfscale.h:49, + from sfscale.cpp:43: +../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 + 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } + | ^~~~~~~~ +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o function_object_bases.lo function_object_bases.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c function_object_bases.cpp -fPIC -DPIC -o .libs/function_object_bases.o -In file included from /usr/include/c++/14/vector:72, - from ../core/clipper_memory.h:50, - from ../core/clipper_types.h:50: -/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 700 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ In file included from ../core/clipper_types.h:49, from ../core/cell.h:50, from ../core/coords.h:49, @@ -1880,6 +1909,36 @@ ../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o sfweight.lo sfweight.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c sfweight.cpp -fPIC -DPIC -o .libs/sfweight.o +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o mapfilter.lo mapfilter.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c mapfilter.cpp -fPIC -DPIC -o .libs/mapfilter.o +In file included from ../core/clipper_types.h:49, + from ../core/cell.h:50, + from ../core/coords.h:49, + from ../core/hkl_lookup.h:49, + from ../core/hkl_info.h:49, + from ../core/hkl_data.h:49, + from ../core/hkl_datatypes.h:49, + from function_object_bases.h:50, + from sfweight.h:49, + from sfweight.cpp:43: +../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 + 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } + | ^~~~~~~~ +In file included from ../core/clipper_types.h:49, + from ../core/cell.h:50, + from ../core/coords.h:49, + from ../core/hkl_lookup.h:49, + from ../core/hkl_info.h:49, + from ../core/hkl_data.h:49, + from ../core/hkl_datatypes.h:49, + from function_object_bases.h:50, + from mapfilter.h:50, + from mapfilter.cpp:43: +../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 + 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } + | ^~~~~~~~ In file included from /usr/include/c++/14/vector:72, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50: @@ -1887,6 +1946,20 @@ /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/14/vector:72, + from ../core/clipper_memory.h:50, + from ../core/clipper_types.h:50: +/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 700 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/14/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void clipper::NXmap::init(const clipper::Grid&, const clipper::RTop<>&) [with T = double]' at ../core/nxmap.h:357:48, + inlined from 'bool clipper::MapFilter_fft::operator()(clipper::NXmap&, const clipper::NXmap&) const [with T = double]' at mapfilter.cpp:317:14: +/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1058 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/vector:66: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::NXmap::init(const clipper::Cell&, const clipper::Grid_sampling&, const clipper::Grid_range&) [with T = double]' at ../core/nxmap.h:367:63, @@ -1894,6 +1967,26 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/14/vector:72, + from ../core/clipper_memory.h:50, + from ../core/clipper_types.h:50: +/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 700 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void clipper::Xmap::init(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]' at ../core/xmap.h:364:156, + inlined from 'bool clipper::MapFilter_slow::operator()(clipper::Xmap&, const clipper::Xmap&) const [with T = double]' at mapfilter.cpp:74:14: +/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1058 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void clipper::NXmap::init(const clipper::Cell&, const clipper::Grid_sampling&, const clipper::Grid_range&) [with T = double]' at ../core/nxmap.h:367:63, + inlined from 'clipper::NXmap::NXmap(const clipper::Cell&, const clipper::Grid_sampling&, const clipper::Grid_range&) [with T = double]' at ../core/nxmap.h:349:11, + inlined from 'bool clipper::MapFilter_slow::operator()(clipper::Xmap&, const clipper::Xmap&) const [with T = double]' at mapfilter.cpp:91:12: +/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1058 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/vector:66: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, @@ -1903,6 +1996,14 @@ 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void clipper::Xmap::init(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]' at ../core/xmap.h:364:156, + inlined from 'bool clipper::MapFilter_fft::operator()(clipper::Xmap&, const clipper::Xmap&) const [with T = double]' at mapfilter.cpp:206:14: +/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1058 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o skeleton.lo skeleton.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c skeleton.cpp -fPIC -DPIC -o .libs/skeleton.o +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, @@ -1929,9 +2030,7 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o sfweight.lo sfweight.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c sfweight.cpp -fPIC -DPIC -o .libs/sfweight.o -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o mapfilter.lo mapfilter.cpp +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o originmatch.lo originmatch.cpp In file included from ../core/clipper_types.h:49, from ../core/cell.h:50, from ../core/coords.h:49, @@ -1940,12 +2039,12 @@ from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, - from sfweight.h:49, - from sfweight.cpp:43: + from skeleton.h:50, + from skeleton.cpp:42: ../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c mapfilter.cpp -fPIC -DPIC -o .libs/mapfilter.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c originmatch.cpp -fPIC -DPIC -o .libs/originmatch.o In file included from ../core/clipper_types.h:49, from ../core/cell.h:50, from ../core/coords.h:49, @@ -1954,8 +2053,8 @@ from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, - from mapfilter.h:50, - from mapfilter.cpp:43: + from originmatch.h:49, + from originmatch.cpp:43: ../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ @@ -2023,6 +2122,13 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/14/vector:72, + from ../core/clipper_memory.h:50, + from ../core/clipper_types.h:50: +/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::SFweight_spline::HLterms; _Alloc = std::allocator::HLterms>]': +/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector::HLterms, std::allocator::HLterms> >::iterator' changed in GCC 7.1 + 700 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, @@ -2033,6 +2139,16 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/14/vector:66: +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::SFweight_spline::HLterms; _Alloc = std::allocator::HLterms>]', + inlined from 'void clipper::SFweight_spline::init(int, int, int) [with T = float]' at sfweight.cpp:176:17: +/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::HLterms*, std::vector::HLterms, std::allocator::HLterms> > >' changed in GCC 7.1 + 1058 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::SFweight_spline::HLterms; _Alloc = std::allocator::HLterms>]': +/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector::HLterms, std::allocator::HLterms> >::iterator' changed in GCC 7.1 + 700 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, @@ -2060,18 +2176,20 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/14/vector:72, - from ../core/clipper_memory.h:50, - from ../core/clipper_types.h:50: +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::SFweight_spline::HLterms; _Alloc = std::allocator::HLterms>]', + inlined from 'void clipper::SFweight_spline::init(int, int, int) [with T = double]' at sfweight.cpp:176:17: +/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::HLterms*, std::vector::HLterms, std::allocator::HLterms> > >' changed in GCC 7.1 + 1058 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/14/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void clipper::NXmap::init(const clipper::Grid&, const clipper::RTop<>&) [with T = double]' at ../core/nxmap.h:357:48, - inlined from 'bool clipper::MapFilter_fft::operator()(clipper::NXmap&, const clipper::NXmap&) const [with T = double]' at mapfilter.cpp:317:14: -/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::datatypes::ABCD; _Alloc = std::allocator >]': +/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::datatypes::ABCD; _Alloc = std::allocator >]', + inlined from 'void clipper::HKL_data::update() [with T = clipper::datatypes::ABCD]' at ../core/hkl_data.h:413:18: +/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', @@ -2101,22 +2219,39 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o test_contrib.lo test_contrib.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c test_contrib.cpp -fPIC -DPIC -o .libs/test_contrib.o +In file included from ../core/clipper_types.h:49, + from ../core/clipper_test.h:49, + from test_contrib.h:49, + from test_contrib.cpp:43: +../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 + 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } + | ^~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void clipper::Xmap::init(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]' at ../core/xmap.h:364:156, - inlined from 'bool clipper::MapFilter_slow::operator()(clipper::Xmap&, const clipper::Xmap&) const [with T = double]' at mapfilter.cpp:74:14: + inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, + inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, + inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, + inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, + inlined from 'clipper::BasisFn_log_aniso_gaussian::BasisFn_log_aniso_gaussian()' at ../core/resol_basisfn.h:233:52, + inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_spline; T = float]' at sfscale.cpp:163:30: /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void clipper::NXmap::init(const clipper::Cell&, const clipper::Grid_sampling&, const clipper::Grid_range&) [with T = double]' at ../core/nxmap.h:367:63, - inlined from 'clipper::NXmap::NXmap(const clipper::Cell&, const clipper::Grid_sampling&, const clipper::Grid_range&) [with T = double]' at ../core/nxmap.h:349:11, - inlined from 'bool clipper::MapFilter_slow::operator()(clipper::Xmap&, const clipper::Xmap&) const [with T = double]' at mapfilter.cpp:91:12: + inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, + inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, + inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, + inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, + inlined from 'clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)' at ../core/resol_basisfn.h:136:120, + inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_spline; T = float]' at sfscale.cpp:181:7: /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void clipper::Xmap::init(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]' at ../core/xmap.h:364:156, - inlined from 'bool clipper::MapFilter_fft::operator()(clipper::Xmap&, const clipper::Xmap&) const [with T = double]' at mapfilter.cpp:206:14: + inlined from 'void clipper::Array2d::resize(const int&, const int&) [with T = double]' at ../core/clipper_types.h:376:40, + inlined from 'clipper::Matrix::Matrix(const int&, const int&) [with T = double]' at ../core/clipper_types.h:403:27, + inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_spline; T = float]' at sfscale.cpp:228:17: /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2125,8 +2260,8 @@ inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, - inlined from 'clipper::BasisFn_log_aniso_gaussian::BasisFn_log_aniso_gaussian()' at ../core/resol_basisfn.h:233:52, - inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_spline; T = float]' at sfscale.cpp:163:30: + inlined from 'clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)' at ../core/resol_basisfn.h:136:120, + inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = float]' at sfweight.cpp:218:18: /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2136,36 +2271,28 @@ inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, inlined from 'clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)' at ../core/resol_basisfn.h:136:120, - inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_spline; T = float]' at sfscale.cpp:181:7: + inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = float]' at sfweight.cpp:219:18: /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void clipper::Array2d::resize(const int&, const int&) [with T = double]' at ../core/clipper_types.h:376:40, - inlined from 'clipper::Matrix::Matrix(const int&, const int&) [with T = double]' at ../core/clipper_types.h:403:27, - inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_spline; T = float]' at sfscale.cpp:228:17: + inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, + inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, + inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = float]' at sfweight.cpp:278:19: +/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1058 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, + inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, + inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = float]' at sfweight.cpp:279:19: /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o skeleton.lo skeleton.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c skeleton.cpp -fPIC -DPIC -o .libs/skeleton.o /usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::datatypes::F_sigF; _Alloc = std::allocator >]': /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -In file included from ../core/clipper_types.h:49, - from ../core/cell.h:50, - from ../core/coords.h:49, - from ../core/hkl_lookup.h:49, - from ../core/hkl_info.h:49, - from ../core/hkl_data.h:49, - from ../core/hkl_datatypes.h:49, - from function_object_bases.h:50, - from skeleton.h:50, - from skeleton.cpp:42: -../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 - 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } - | ^~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::datatypes::F_sigF; _Alloc = std::allocator >]', inlined from 'void clipper::HKL_data::update() [with T = clipper::datatypes::F_sigF]' at ../core/hkl_data.h:413:18: /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 @@ -2225,19 +2352,6 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/14/vector:72, - from ../core/clipper_memory.h:50, - from ../core/clipper_types.h:50: -/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::SFweight_spline::HLterms; _Alloc = std::allocator::HLterms>]': -/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector::HLterms, std::allocator::HLterms> >::iterator' changed in GCC 7.1 - 700 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/14/vector:66: -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::SFweight_spline::HLterms; _Alloc = std::allocator::HLterms>]', - inlined from 'void clipper::SFweight_spline::init(int, int, int) [with T = float]' at sfweight.cpp:176:17: -/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::HLterms*, std::vector::HLterms, std::allocator::HLterms> > >' changed in GCC 7.1 - 1058 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, @@ -2265,19 +2379,40 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::SFweight_spline::HLterms; _Alloc = std::allocator::HLterms>]': -/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector::HLterms, std::allocator::HLterms> >::iterator' changed in GCC 7.1 - 700 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::SFweight_spline::HLterms; _Alloc = std::allocator::HLterms>]', - inlined from 'void clipper::SFweight_spline::init(int, int, int) [with T = double]' at sfweight.cpp:176:17: -/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::HLterms*, std::vector::HLterms, std::allocator::HLterms> > >' changed in GCC 7.1 +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, + inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, + inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, + inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, + inlined from 'clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)' at ../core/resol_basisfn.h:136:120, + inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetHL; T = float]' at sfweight.cpp:218:18: +/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1058 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, + inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, + inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, + inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, + inlined from 'clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)' at ../core/resol_basisfn.h:136:120, + inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetHL; T = float]' at sfweight.cpp:219:18: +/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1058 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, + inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, + inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetHL; T = float]' at sfweight.cpp:278:19: +/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1058 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', + inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, + inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, + inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetHL; T = float]' at sfweight.cpp:279:19: +/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 700 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::datatypes::F_phi; _Alloc = std::allocator >]': /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 700 | vector<_Tp, _Alloc>:: @@ -2297,13 +2432,6 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::datatypes::ABCD; _Alloc = std::allocator >]': -/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::datatypes::ABCD; _Alloc = std::allocator >]', - inlined from 'void clipper::HKL_data::update() [with T = clipper::datatypes::ABCD]' at ../core/hkl_data.h:413:18: -/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - 1058 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, @@ -2350,38 +2478,22 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, - inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, - inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, - inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, - inlined from 'clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)' at ../core/resol_basisfn.h:136:120, - inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = float]' at sfweight.cpp:218:18: -/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1058 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, - inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, - inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, - inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, - inlined from 'clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)' at ../core/resol_basisfn.h:136:120, - inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = float]' at sfweight.cpp:219:18: -/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1058 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, - inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, - inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = float]' at sfweight.cpp:278:19: -/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::datatypes::E_sigE; _Alloc = std::allocator >]': +/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 + 700 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::datatypes::E_sigE; _Alloc = std::allocator >]', + inlined from 'void clipper::HKL_data::update() [with T = clipper::datatypes::E_sigE]' at ../core/hkl_data.h:413:18: +/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, - inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, - inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = float]' at sfweight.cpp:279:19: -/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::datatypes::F_sigF; _Alloc = std::allocator >]': +/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 + 700 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::datatypes::F_sigF; _Alloc = std::allocator >]', + inlined from 'void clipper::HKL_data::update() [with T = clipper::datatypes::F_sigF]' at ../core/hkl_data.h:413:18: +/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', @@ -2411,15 +2523,13 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o originmatch.lo originmatch.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c originmatch.cpp -fPIC -DPIC -o .libs/originmatch.o In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, - inlined from 'clipper::BasisFn_log_aniso_gaussian::BasisFn_log_aniso_gaussian()' at ../core/resol_basisfn.h:233:52, - inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_spline; T = double]' at sfscale.cpp:163:30: + inlined from 'clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)' at ../core/resol_basisfn.h:136:120, + inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = double]' at sfweight.cpp:218:18: /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2429,98 +2539,41 @@ inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, inlined from 'clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)' at ../core/resol_basisfn.h:136:120, - inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_spline; T = double]' at sfscale.cpp:181:7: + inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = double]' at sfweight.cpp:219:18: /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void clipper::Array2d::resize(const int&, const int&) [with T = double]' at ../core/clipper_types.h:376:40, - inlined from 'clipper::Matrix::Matrix(const int&, const int&) [with T = double]' at ../core/clipper_types.h:403:27, - inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_spline; T = double]' at sfscale.cpp:228:17: + inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = double]' at sfweight.cpp:222:18: /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from ../core/clipper_types.h:49, - from ../core/cell.h:50, - from ../core/coords.h:49, - from ../core/hkl_lookup.h:49, - from ../core/hkl_info.h:49, - from ../core/hkl_data.h:49, - from ../core/hkl_datatypes.h:49, - from function_object_bases.h:50, - from originmatch.h:49, - from originmatch.cpp:43: -../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 - 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } - | ^~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, - inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, - inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, - inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, - inlined from 'clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)' at ../core/resol_basisfn.h:136:120, - inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetHL; T = float]' at sfweight.cpp:218:18: + inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = double]' at sfweight.cpp:223:18: /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, - inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, - inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, - inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, - inlined from 'clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)' at ../core/resol_basisfn.h:136:120, - inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetHL; T = float]' at sfweight.cpp:219:18: + inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = double]' at sfweight.cpp:224:17: /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, - inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, - inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetHL; T = float]' at sfweight.cpp:278:19: + inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = double]' at sfweight.cpp:225:17: /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, - inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetHL; T = float]' at sfweight.cpp:279:19: + inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = double]' at sfweight.cpp:278:19: /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o test_contrib.lo test_contrib.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c test_contrib.cpp -fPIC -DPIC -o .libs/test_contrib.o -In file included from ../core/clipper_types.h:49, - from ../core/clipper_test.h:49, - from test_contrib.h:49, - from test_contrib.cpp:43: -../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 - 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } - | ^~~~~~~~ -/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::datatypes::E_sigE; _Alloc = std::allocator >]': -/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 - 700 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::datatypes::E_sigE; _Alloc = std::allocator >]', - inlined from 'void clipper::HKL_data::update() [with T = clipper::datatypes::E_sigE]' at ../core/hkl_data.h:413:18: -/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - 1058 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::datatypes::F_sigF; _Alloc = std::allocator >]': -/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 - 700 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::datatypes::F_sigF; _Alloc = std::allocator >]', - inlined from 'void clipper::HKL_data::update() [with T = clipper::datatypes::F_sigF]' at ../core/hkl_data.h:413:18: -/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 - 1058 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, - inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, - inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, - inlined from 'clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)' at ../core/resol_basisfn.h:136:120, - inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = double]' at sfweight.cpp:218:18: + inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = double]' at sfweight.cpp:279:19: /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2529,42 +2582,25 @@ inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, - inlined from 'clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)' at ../core/resol_basisfn.h:136:120, - inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = double]' at sfweight.cpp:219:18: -/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1058 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = double]' at sfweight.cpp:222:18: -/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1058 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = double]' at sfweight.cpp:223:18: -/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1058 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = double]' at sfweight.cpp:224:17: -/usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1058 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = double]' at sfweight.cpp:225:17: + inlined from 'clipper::BasisFn_log_aniso_gaussian::BasisFn_log_aniso_gaussian()' at ../core/resol_basisfn.h:233:52, + inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_spline; T = double]' at sfscale.cpp:163:30: /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, - inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = double]' at sfweight.cpp:278:19: + inlined from 'clipper::BasisFn_base::Fderiv::Fderiv(const int&)' at ../core/resol_fn.h:80:43, + inlined from 'clipper::BasisFn_base::BasisFn_base(const int&)' at ../core/resol_fn.h:86:46, + inlined from 'clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)' at ../core/resol_basisfn.h:136:120, + inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_spline; T = double]' at sfscale.cpp:181:7: /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../core/clipper_types.h:379:40, - inlined from 'clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]' at ../core/clipper_types.h:406:27, - inlined from 'bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = double]' at sfweight.cpp:279:19: + inlined from 'void clipper::Array2d::resize(const int&, const int&) [with T = double]' at ../core/clipper_types.h:376:40, + inlined from 'clipper::Matrix::Matrix(const int&, const int&) [with T = double]' at ../core/clipper_types.h:403:27, + inlined from 'bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::I_sigI; T1 = clipper::TargetFn_scaleI1I2, clipper::datatypes::I_sigI >; T2 = clipper::TargetFn_scaleLogI1I2, clipper::datatypes::I_sigI >; S = clipper::BasisFn_spline; T = double]' at sfscale.cpp:228:17: /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2631,25 +2667,27 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o libclipper-contrib.la -rpath /usr/lib/arm-linux-gnueabihf convolution_search.lo sfcalc.lo edcalc.lo sfcalc_obs.lo fffear.lo sfscale.lo function_object_bases.lo sfweight.lo mapfilter.lo skeleton.lo originmatch.lo test_contrib.lo ../core/libclipper-core.la -lm +/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o libclipper-contrib.la -rpath /usr/lib/arm-linux-gnueabihf convolution_search.lo sfcalc.lo edcalc.lo sfcalc_obs.lo fffear.lo sfscale.lo function_object_bases.lo sfweight.lo mapfilter.lo skeleton.lo originmatch.lo test_contrib.lo ../core/libclipper-core.la -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/14/crtbeginS.o .libs/convolution_search.o .libs/sfcalc.o .libs/edcalc.o .libs/sfcalc_obs.o .libs/fffear.o .libs/sfscale.o .libs/function_object_bases.o .libs/sfweight.o .libs/mapfilter.o .libs/skeleton.o .libs/originmatch.o .libs/test_contrib.o -Wl,-rpath -Wl,/build/reproducible-path/clipper-2.1.20201109/clipper/core/.libs ../core/.libs/libclipper-core.so -L/usr/lib/gcc/arm-linux-gnueabihf/14 -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/14/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-contrib.so.2 -o .libs/libclipper-contrib.so.2.0.1 libtool: link: (cd ".libs" && rm -f "libclipper-contrib.so.2" && ln -s "libclipper-contrib.so.2.0.1" "libclipper-contrib.so.2") libtool: link: (cd ".libs" && rm -f "libclipper-contrib.so" && ln -s "libclipper-contrib.so.2.0.1" "libclipper-contrib.so") libtool: link: ( cd ".libs" && rm -f "libclipper-contrib.la" && ln -s "../libclipper-contrib.la" "libclipper-contrib.la" ) make[4]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/clipper/contrib' make[4]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o mmdb/clipper_mmdb.lo mmdb/clipper_mmdb.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/minimol.lo minimol/minimol.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/container_minimol.lo minimol/container_minimol.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o mmdb/clipper_mmdb.lo mmdb/clipper_mmdb.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/minimol.lo minimol/minimol.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/container_minimol.lo minimol/container_minimol.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/minimol_data.lo minimol/minimol_data.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c mmdb/clipper_mmdb.cpp -fPIC -DPIC -o mmdb/.libs/clipper_mmdb.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c minimol/minimol_data.cpp -fPIC -DPIC -o minimol/.libs/minimol_data.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c minimol/container_minimol.cpp -fPIC -DPIC -o minimol/.libs/container_minimol.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c minimol/minimol.cpp -fPIC -DPIC -o minimol/.libs/minimol.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c mmdb/clipper_mmdb.cpp -fPIC -DPIC -o mmdb/.libs/clipper_mmdb.o -In file included from minimol/../core/clipper_types.h:49, - from minimol/../core/cell.h:50, - from minimol/../core/coords.h:49, - from minimol/minimol.h:49, - from minimol/minimol.cpp:43: -minimol/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 +In file included from mmdb/../core/clipper_types.h:49, + from mmdb/../core/cell.h:50, + from mmdb/../core/coords.h:49, + from mmdb/clipper_mmdb.h:49, + from mmdb/clipper_mmdb.cpp:42: +mmdb/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In file included from minimol/../core/clipper_types.h:49, @@ -2662,17 +2700,15 @@ minimol/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ -In file included from mmdb/../core/clipper_types.h:49, - from mmdb/../core/cell.h:50, - from mmdb/../core/coords.h:49, - from mmdb/clipper_mmdb.h:49, - from mmdb/clipper_mmdb.cpp:42: -mmdb/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 +In file included from minimol/../core/clipper_types.h:49, + from minimol/../core/cell.h:50, + from minimol/../core/coords.h:49, + from minimol/minimol.h:49, + from minimol/minimol.cpp:43: +minimol/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/minimol_data.lo minimol/minimol_data.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c minimol/minimol_data.cpp -fPIC -DPIC -o minimol/.libs/minimol_data.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/minimol_io.lo minimol/minimol_io.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/minimol_io.lo minimol/minimol_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c minimol/minimol_io.cpp -fPIC -DPIC -o minimol/.libs/minimol_io.o In file included from minimol/../mmdb/../core/clipper_types.h:49, from minimol/../mmdb/../core/cell.h:50, @@ -2683,7 +2719,7 @@ minimol/../mmdb/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/minimol_seq.lo minimol/minimol_seq.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/minimol_seq.lo minimol/minimol_seq.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c minimol/minimol_seq.cpp -fPIC -DPIC -o minimol/.libs/minimol_seq.o In file included from minimol/../core/clipper_types.h:49, from minimol/../core/cell.h:50, @@ -2694,7 +2730,41 @@ minimol/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/minimol_utils.lo minimol/minimol_utils.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/minimol_utils.lo minimol/minimol_utils.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c minimol/minimol_utils.cpp -fPIC -DPIC -o minimol/.libs/minimol_utils.o +In file included from minimol/../core/clipper_types.h:49, + from minimol/../core/cell.h:50, + from minimol/../core/coords.h:49, + from minimol/minimol.h:49, + from minimol/minimol_utils.h:49, + from minimol/minimol_utils.cpp:43: +minimol/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 + 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } + | ^~~~~~~~ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o phs/phs_io.lo phs/phs_io.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c phs/phs_io.cpp -fPIC -DPIC -o phs/.libs/phs_io.o +In file included from phs/../core/clipper_types.h:49, + from phs/../core/cell.h:50, + from phs/../core/coords.h:49, + from phs/../core/hkl_lookup.h:49, + from phs/../core/hkl_info.h:49, + from phs/../core/hkl_data.h:49, + from phs/../core/hkl_datatypes.h:49, + from phs/phs_io.h:49, + from phs/phs_io.cpp:42: +phs/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 + 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } + | ^~~~~~~~ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o cif/cif_data_io.lo cif/cif_data_io.cpp +In file included from /usr/include/c++/14/vector:65, + from minimol/../mmdb/../core/clipper_memory.h:50, + from minimol/../mmdb/../core/clipper_types.h:50: +/usr/include/c++/14/bits/stl_uninitialized.h: In function '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]': +/usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c cif/cif_data_io.cpp -fPIC -DPIC -o cif/.libs/cif_data_io.o In file included from /usr/include/c++/14/vector:72, from minimol/../core/clipper_memory.h:50, from minimol/../core/clipper_types.h:50: @@ -2702,27 +2772,47 @@ /usr/include/c++/14/bits/vector.tcc:181:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 181 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c minimol/minimol_utils.cpp -fPIC -DPIC -o minimol/.libs/minimol_utils.o In file included from /usr/include/c++/14/vector:65: /usr/include/c++/14/bits/stl_uninitialized.h: In function '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]': /usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -In file included from minimol/../core/clipper_types.h:49, - from minimol/../core/cell.h:50, - from minimol/../core/coords.h:49, - from minimol/minimol.h:49, - from minimol/minimol_utils.h:49, - from minimol/minimol_utils.cpp:43: -minimol/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 +In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; bool _TrivialValueTypes = false]', + inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, + inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; _Tp = clipper::MAtom]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, + inlined from 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = clipper::MAtom; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:1624:35, + inlined from 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]' at /usr/include/c++/14/bits/vector.tcc:238:44: +/usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 137 | { return std::__do_uninit_copy(__first, __last, __result); } + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; bool _TrivialValueTypes = false]', + inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, + inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; _Tp = clipper::MAtom]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, + inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, + inlined from 'clipper::MMonomer::MMonomer(const clipper::MMonomer&)' at minimol/minimol.h:136:8: +/usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 137 | { return std::__do_uninit_copy(__first, __last, __result); } + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from cif/../core/clipper_types.h:49, + from cif/../core/cell.h:50, + from cif/../core/coords.h:49, + from cif/../core/hkl_lookup.h:49, + from cif/../core/hkl_info.h:49, + from cif/../core/hkl_data.h:49, + from cif/../core/hkl_datatypes.h:49, + from cif/cif_data_io.h:48, + from cif/cif_data_io.cpp:44: +cif/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; bool _TrivialValueTypes = false]', inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; _Tp = clipper::MAtom]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, - inlined from 'clipper::MMonomer::MMonomer(const clipper::MMonomer&)' at minimol/minimol.h:136:8: + inlined from 'clipper::MMonomer::MMonomer(const clipper::MMonomer&)' at minimol/minimol.h:136:8, + inlined from 'void std::_Construct(_T1*, const _T2&) [with _T1 = clipper::MMonomer; _T2 = clipper::MMonomer]' at /usr/include/c++/14/bits/stl_construct.h:128:7, + inlined from '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MMonomer*]' at /usr/include/c++/14/bits/stl_uninitialized.h:120:21: /usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2736,6 +2826,20 @@ /usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; bool _TrivialValueTypes = false]', + inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, + inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; _Tp = clipper::MAtom]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, + inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, + inlined from 'clipper::MMonomer::MMonomer(const clipper::MMonomer&)' at minimol/minimol.h:136:8, + inlined from 'void std::_Construct(_T1*, const _T2&) [with _T1 = clipper::MMonomer; _T2 = clipper::MMonomer]' at /usr/include/c++/14/bits/stl_construct.h:128:7, + inlined from '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = clipper::MMonomer*; _ForwardIterator = clipper::MMonomer*]' at /usr/include/c++/14/bits/stl_uninitialized.h:120:21, + inlined from 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = clipper::MMonomer*; _ForwardIterator = clipper::MMonomer*; bool _TrivialValueTypes = false]' at /usr/include/c++/14/bits/stl_uninitialized.h:137:32, + inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = clipper::MMonomer*; _ForwardIterator = clipper::MMonomer*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, + inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = clipper::MMonomer*; _ForwardIterator = clipper::MMonomer*; _Tp = clipper::MMonomer]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, + inlined from 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::MMonomer; _Alloc = std::allocator]' at /usr/include/c++/14/bits/vector.tcc:257:35: +/usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 137 | { return std::__do_uninit_copy(__first, __last, __result); } + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, const _Tp&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]': /usr/include/c++/14/bits/vector.tcc:457:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 457 | vector<_Tp, _Alloc>:: @@ -2762,6 +2866,19 @@ /usr/include/c++/14/bits/stl_vector.h:1540:24: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 1540 | { return _M_erase(__position); } | ~~~~~~~~^~~~~~~~~~~~ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_types.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c ccp4/ccp4_mtz_types.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_mtz_types.o +In file included from ccp4/../core/clipper_types.h:49, + from ccp4/../core/cell.h:50, + from ccp4/../core/coords.h:49, + from ccp4/../core/container.h:49, + from ccp4/../core/container_types.h:49, + from ccp4/../core/container_hkl.h:49, + from ccp4/ccp4_mtz_types.h:49, + from ccp4/ccp4_mtz_types.cpp:43: +ccp4/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 + 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } + | ^~~~~~~~ In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; bool _TrivialValueTypes = false]', inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; _Tp = clipper::MAtom]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, @@ -2780,57 +2897,29 @@ /usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/14/vector:65, - from minimol/../mmdb/../core/clipper_memory.h:50, - from minimol/../mmdb/../core/clipper_types.h:50: -/usr/include/c++/14/bits/stl_uninitialized.h: In function '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]': -/usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; bool _TrivialValueTypes = false]', - inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, - inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; _Tp = clipper::MAtom]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, - inlined from 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = clipper::MAtom; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:1624:35, - inlined from 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]' at /usr/include/c++/14/bits/vector.tcc:238:44: -/usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 137 | { return std::__do_uninit_copy(__first, __last, __result); } - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; bool _TrivialValueTypes = false]', - inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, - inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; _Tp = clipper::MAtom]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, - inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, - inlined from 'clipper::MMonomer::MMonomer(const clipper::MMonomer&)' at minimol/minimol.h:136:8, - inlined from 'void std::_Construct(_T1*, const _T2&) [with _T1 = clipper::MMonomer; _T2 = clipper::MMonomer]' at /usr/include/c++/14/bits/stl_construct.h:128:7, - inlined from '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MMonomer*]' at /usr/include/c++/14/bits/stl_uninitialized.h:120:21: -/usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 137 | { return std::__do_uninit_copy(__first, __last, __result); } - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; bool _TrivialValueTypes = false]', - inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, - inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; _Tp = clipper::MAtom]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, - inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_vector.h:606:31, - inlined from 'clipper::MMonomer::MMonomer(const clipper::MMonomer&)' at minimol/minimol.h:136:8, - inlined from 'void std::_Construct(_T1*, const _T2&) [with _T1 = clipper::MMonomer; _T2 = clipper::MMonomer]' at /usr/include/c++/14/bits/stl_construct.h:128:7, - inlined from '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = clipper::MMonomer*; _ForwardIterator = clipper::MMonomer*]' at /usr/include/c++/14/bits/stl_uninitialized.h:120:21, - inlined from 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = clipper::MMonomer*; _ForwardIterator = clipper::MMonomer*; bool _TrivialValueTypes = false]' at /usr/include/c++/14/bits/stl_uninitialized.h:137:32, - inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = clipper::MMonomer*; _ForwardIterator = clipper::MMonomer*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, - inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = clipper::MMonomer*; _ForwardIterator = clipper::MMonomer*; _Tp = clipper::MMonomer]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, - inlined from 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = clipper::MMonomer; _Alloc = std::allocator]' at /usr/include/c++/14/bits/vector.tcc:257:35: -/usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 137 | { return std::__do_uninit_copy(__first, __last, __result); } - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o ccp4/ccp4_mtz_io.lo ccp4/ccp4_mtz_io.cpp /usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]': /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c ccp4/ccp4_mtz_io.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_mtz_io.o +In file included from ccp4/../core/clipper_types.h:49, + from ccp4/../core/cell.h:50, + from ccp4/../core/coords.h:49, + from ccp4/../core/container.h:49, + from ccp4/../core/container_types.h:49, + from ccp4/../core/container_hkl.h:49, + from ccp4/ccp4_mtz_types.h:49, + from ccp4/ccp4_mtz_io.h:49, + from ccp4/ccp4_mtz_io.cpp:42: +ccp4/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 + 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } + | ^~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = clipper::MAtom; _Alloc = std::allocator]', inlined from 'clipper::MMonomer& clipper::MMonomer::copy(const clipper::MMonomer&, const clipper::MM::COPY&)' at minimol/minimol.cpp:291:19: /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o phs/phs_io.lo phs/phs_io.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c phs/phs_io.cpp -fPIC -DPIC -o phs/.libs/phs_io.o In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; bool _TrivialValueTypes = false]', inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*]' at /usr/include/c++/14/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = clipper::MAtom*; _Tp = clipper::MAtom]' at /usr/include/c++/14/bits/stl_uninitialized.h:373:37, @@ -2841,60 +2930,7 @@ /usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from phs/../core/clipper_types.h:49, - from phs/../core/cell.h:50, - from phs/../core/coords.h:49, - from phs/../core/hkl_lookup.h:49, - from phs/../core/hkl_info.h:49, - from phs/../core/hkl_data.h:49, - from phs/../core/hkl_datatypes.h:49, - from phs/phs_io.h:49, - from phs/phs_io.cpp:42: -phs/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 - 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } - | ^~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o cif/cif_data_io.lo cif/cif_data_io.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c cif/cif_data_io.cpp -fPIC -DPIC -o cif/.libs/cif_data_io.o -In file included from cif/../core/clipper_types.h:49, - from cif/../core/cell.h:50, - from cif/../core/coords.h:49, - from cif/../core/hkl_lookup.h:49, - from cif/../core/hkl_info.h:49, - from cif/../core/hkl_data.h:49, - from cif/../core/hkl_datatypes.h:49, - from cif/cif_data_io.h:48, - from cif/cif_data_io.cpp:44: -cif/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 - 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } - | ^~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_types.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c ccp4/ccp4_mtz_types.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_mtz_types.o -In file included from ccp4/../core/clipper_types.h:49, - from ccp4/../core/cell.h:50, - from ccp4/../core/coords.h:49, - from ccp4/../core/container.h:49, - from ccp4/../core/container_types.h:49, - from ccp4/../core/container_hkl.h:49, - from ccp4/ccp4_mtz_types.h:49, - from ccp4/ccp4_mtz_types.cpp:43: -ccp4/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 - 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } - | ^~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o ccp4/ccp4_mtz_io.lo ccp4/ccp4_mtz_io.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c ccp4/ccp4_mtz_io.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_mtz_io.o -In file included from ccp4/../core/clipper_types.h:49, - from ccp4/../core/cell.h:50, - from ccp4/../core/coords.h:49, - from ccp4/../core/container.h:49, - from ccp4/../core/container_types.h:49, - from ccp4/../core/container_hkl.h:49, - from ccp4/ccp4_mtz_types.h:49, - from ccp4/ccp4_mtz_io.h:49, - from ccp4/ccp4_mtz_io.cpp:42: -ccp4/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 - 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } - | ^~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o ccp4/ccp4_map_io.lo ccp4/ccp4_map_io.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o ccp4/ccp4_map_io.lo ccp4/ccp4_map_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c ccp4/ccp4_map_io.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_map_io.o In file included from ccp4/../core/clipper_types.h:49, from ccp4/../core/cell.h:50, @@ -2907,10 +2943,12 @@ ccp4/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o ccp4/ccp4_utils.lo ccp4/ccp4_utils.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o ccp4/ccp4_utils.lo ccp4/ccp4_utils.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c ccp4/ccp4_utils.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_utils.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o cns/cns_hkl_io.lo cns/cns_hkl_io.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o cns/cns_hkl_io.lo cns/cns_hkl_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c cns/cns_hkl_io.cpp -fPIC -DPIC -o cns/.libs/cns_hkl_io.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o cns/cns_map_io.lo cns/cns_map_io.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c cns/cns_map_io.cpp -fPIC -DPIC -o cns/.libs/cns_map_io.o In file included from cns/../core/clipper_types.h:49, from cns/../core/cell.h:50, from cns/../core/coords.h:49, @@ -2923,15 +2961,6 @@ cns/../core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ -In file included from /usr/include/c++/14/vector:72, - from ccp4/../core/clipper_memory.h:50, - from ccp4/../core/clipper_types.h:50: -/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 700 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o cns/cns_map_io.lo cns/cns_map_io.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c cns/cns_map_io.cpp -fPIC -DPIC -o cns/.libs/cns_map_io.o In file included from cns/../core/clipper_types.h:49, from cns/../core/cell.h:50, from cns/../core/coords.h:49, @@ -3400,70 +3429,72 @@ /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o fortran/f_interface.lo fortran/f_interface.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c fortran/f_interface.cpp -fPIC -DPIC -o fortran/.libs/f_interface.o +In file included from ../clipper/core/clipper_types.h:49, + from ../clipper/core/cell.h:50, + from ../clipper/core/coords.h:49, + from ../clipper/core/container.h:49, + from ../clipper/core/container_types.h:49, + from ../clipper/core/container_hkl.h:49, + from ../clipper/clipper.h:7, + from fortran/f_interface.cpp:1: +../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 + 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } + | ^~~~~~~~ +In file included from /usr/include/c++/14/vector:72, + from ccp4/../core/clipper_memory.h:50, + from ccp4/../core/clipper_types.h:50: +/usr/include/c++/14/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 700 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o mmdb/libclipper-mmdb.la -rpath /usr/lib/arm-linux-gnueabihf mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb2 -lm In file included from /usr/include/c++/14/vector:66: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void clipper::Xmap::init(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]' at ccp4/../core/xmap.h:364:156, - inlined from 'void clipper::CCP4MAPfile::import_xmap(clipper::Xmap&) const [with T = double]' at ccp4/ccp4_map_io.cpp:212:12: + inlined from 'void clipper::reference_cols(CMtz::MTZ*, std::vector, std::vector >, std::vector >&, std::vector >&)' at ccp4/ccp4_mtz_io.cpp:384:21: /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/vector:66: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', - inlined from 'void clipper::reference_cols(CMtz::MTZ*, std::vector, std::vector >, std::vector >&, std::vector >&)' at ccp4/ccp4_mtz_io.cpp:384:21: + inlined from 'void clipper::Xmap::init(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]' at ccp4/../core/xmap.h:364:156, + inlined from 'void clipper::CCP4MAPfile::import_xmap(clipper::Xmap&) const [with T = double]' at ccp4/ccp4_map_io.cpp:212:12: /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/14/crtbeginS.o mmdb/.libs/clipper_mmdb.o -Wl,-rpath -Wl,/build/reproducible-path/clipper-2.1.20201109/clipper/core/.libs core/.libs/libclipper-core.so -lmmdb2 -L/usr/lib/gcc/arm-linux-gnueabihf/14 -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/14/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-mmdb.so.2 -o mmdb/.libs/libclipper-mmdb.so.2.0.1 +libtool: link: (cd "mmdb/.libs" && rm -f "libclipper-mmdb.so.2" && ln -s "libclipper-mmdb.so.2.0.1" "libclipper-mmdb.so.2") +libtool: link: (cd "mmdb/.libs" && rm -f "libclipper-mmdb.so" && ln -s "libclipper-mmdb.so.2.0.1" "libclipper-mmdb.so") +libtool: link: ( cd "mmdb/.libs" && rm -f "libclipper-mmdb.la" && ln -s "../libclipper-mmdb.la" "libclipper-mmdb.la" ) +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o phs/libclipper-phs.la -rpath /usr/lib/arm-linux-gnueabihf phs/phs_io.lo core/libclipper-core.la -lm In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Xmap::init(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]' at ccp4/../core/xmap.h:364:156, inlined from 'clipper::CCP4MAPfile::ASUerror clipper::CCP4MAPfile::import_xmap_check_asu(clipper::Xmap&, T) const [with T = double]' at ccp4/ccp4_map_io.cpp:497:12: /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/14/crtbeginS.o phs/.libs/phs_io.o -Wl,-rpath -Wl,/build/reproducible-path/clipper-2.1.20201109/clipper/core/.libs core/.libs/libclipper-core.so -L/usr/lib/gcc/arm-linux-gnueabihf/14 -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/14/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-phs.so.2 -o phs/.libs/libclipper-phs.so.2.0.1 In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::NXmap::init(const clipper::Cell&, const clipper::Grid_sampling&, const clipper::Grid_range&) [with T = double]' at ccp4/../core/nxmap.h:367:63, inlined from 'void clipper::CCP4MAPfile::import_nxmap(clipper::NXmap&) const [with T = double]' at ccp4/ccp4_map_io.cpp:342:13: /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o fortran/f_interface.lo fortran/f_interface.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c fortran/f_interface.cpp -fPIC -DPIC -o fortran/.libs/f_interface.o -In file included from ../clipper/core/clipper_types.h:49, - from ../clipper/core/cell.h:50, - from ../clipper/core/coords.h:49, - from ../clipper/core/container.h:49, - from ../clipper/core/container_types.h:49, - from ../clipper/core/container_hkl.h:49, - from ../clipper/clipper.h:7, - from fortran/f_interface.cpp:1: -../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 - 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } - | ^~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o mmdb/libclipper-mmdb.la -rpath /usr/lib/arm-linux-gnueabihf mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb2 -lm -libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/14/crtbeginS.o mmdb/.libs/clipper_mmdb.o -Wl,-rpath -Wl,/build/reproducible-path/clipper-2.1.20201109/clipper/core/.libs core/.libs/libclipper-core.so -lmmdb2 -L/usr/lib/gcc/arm-linux-gnueabihf/14 -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/14/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-mmdb.so.2 -o mmdb/.libs/libclipper-mmdb.so.2.0.1 -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o phs/libclipper-phs.la -rpath /usr/lib/arm-linux-gnueabihf phs/phs_io.lo core/libclipper-core.la -lm -libtool: link: (cd "mmdb/.libs" && rm -f "libclipper-mmdb.so.2" && ln -s "libclipper-mmdb.so.2.0.1" "libclipper-mmdb.so.2") -libtool: link: (cd "mmdb/.libs" && rm -f "libclipper-mmdb.so" && ln -s "libclipper-mmdb.so.2.0.1" "libclipper-mmdb.so") -libtool: link: ( cd "mmdb/.libs" && rm -f "libclipper-mmdb.la" && ln -s "../libclipper-mmdb.la" "libclipper-mmdb.la" ) -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o cif/libclipper-cif.la -rpath /usr/lib/arm-linux-gnueabihf cif/cif_data_io.lo core/libclipper-core.la -lmmdb2 -lm -libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/14/crtbeginS.o phs/.libs/phs_io.o -Wl,-rpath -Wl,/build/reproducible-path/clipper-2.1.20201109/clipper/core/.libs core/.libs/libclipper-core.so -L/usr/lib/gcc/arm-linux-gnueabihf/14 -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/14/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-phs.so.2 -o phs/.libs/libclipper-phs.so.2.0.1 -libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/14/crtbeginS.o cif/.libs/cif_data_io.o -Wl,-rpath -Wl,/build/reproducible-path/clipper-2.1.20201109/clipper/core/.libs core/.libs/libclipper-core.so -lmmdb2 -L/usr/lib/gcc/arm-linux-gnueabihf/14 -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/14/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-cif.so.2 -o cif/.libs/libclipper-cif.so.2.0.1 libtool: link: (cd "phs/.libs" && rm -f "libclipper-phs.so.2" && ln -s "libclipper-phs.so.2.0.1" "libclipper-phs.so.2") libtool: link: (cd "phs/.libs" && rm -f "libclipper-phs.so" && ln -s "libclipper-phs.so.2.0.1" "libclipper-phs.so") libtool: link: ( cd "phs/.libs" && rm -f "libclipper-phs.la" && ln -s "../libclipper-phs.la" "libclipper-phs.la" ) -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o ccp4/libclipper-ccp4.la -rpath /usr/lib/arm-linux-gnueabihf ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o cif/libclipper-cif.la -rpath /usr/lib/arm-linux-gnueabihf cif/cif_data_io.lo core/libclipper-core.la -lmmdb2 -lm +libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/14/crtbeginS.o cif/.libs/cif_data_io.o -Wl,-rpath -Wl,/build/reproducible-path/clipper-2.1.20201109/clipper/core/.libs core/.libs/libclipper-core.so -lmmdb2 -L/usr/lib/gcc/arm-linux-gnueabihf/14 -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/14/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-cif.so.2 -o cif/.libs/libclipper-cif.so.2.0.1 libtool: link: (cd "cif/.libs" && rm -f "libclipper-cif.so.2" && ln -s "libclipper-cif.so.2.0.1" "libclipper-cif.so.2") libtool: link: (cd "cif/.libs" && rm -f "libclipper-cif.so" && ln -s "libclipper-cif.so.2.0.1" "libclipper-cif.so") libtool: link: ( cd "cif/.libs" && rm -f "libclipper-cif.la" && ln -s "../libclipper-cif.la" "libclipper-cif.la" ) -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o fortran/libclipper-fortran.la -rpath /usr/lib/arm-linux-gnueabihf fortran/f_interface.lo core/libclipper-core.la contrib/libclipper-contrib.la -lm -libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/14/crtbeginS.o ccp4/.libs/ccp4_mtz_types.o ccp4/.libs/ccp4_mtz_io.o ccp4/.libs/ccp4_map_io.o ccp4/.libs/ccp4_utils.o -Wl,-rpath -Wl,/build/reproducible-path/clipper-2.1.20201109/clipper/core/.libs core/.libs/libclipper-core.so -lccp4c -L/usr/lib/gcc/arm-linux-gnueabihf/14 -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/14/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-ccp4.so.2 -o ccp4/.libs/libclipper-ccp4.so.2.0.1 +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o fortran/libclipper-fortran.la -rpath /usr/lib/arm-linux-gnueabihf fortran/f_interface.lo core/libclipper-core.la contrib/libclipper-contrib.la -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/14/crtbeginS.o fortran/.libs/f_interface.o -Wl,-rpath -Wl,/build/reproducible-path/clipper-2.1.20201109/clipper/core/.libs -Wl,-rpath -Wl,/build/reproducible-path/clipper-2.1.20201109/clipper/contrib/.libs core/.libs/libclipper-core.so contrib/.libs/libclipper-contrib.so -L/usr/lib/gcc/arm-linux-gnueabihf/14 -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/14/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-fortran.so.2 -o fortran/.libs/libclipper-fortran.so.2.0.1 -libtool: link: (cd "ccp4/.libs" && rm -f "libclipper-ccp4.so.2" && ln -s "libclipper-ccp4.so.2.0.1" "libclipper-ccp4.so.2") -libtool: link: (cd "ccp4/.libs" && rm -f "libclipper-ccp4.so" && ln -s "libclipper-ccp4.so.2.0.1" "libclipper-ccp4.so") -libtool: link: ( cd "ccp4/.libs" && rm -f "libclipper-ccp4.la" && ln -s "../libclipper-ccp4.la" "libclipper-ccp4.la" ) -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o minimol/libclipper-minimol.la -rpath /usr/lib/arm-linux-gnueabihf minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb2 -lm libtool: link: (cd "fortran/.libs" && rm -f "libclipper-fortran.so.2" && ln -s "libclipper-fortran.so.2.0.1" "libclipper-fortran.so.2") libtool: link: (cd "fortran/.libs" && rm -f "libclipper-fortran.so" && ln -s "libclipper-fortran.so.2.0.1" "libclipper-fortran.so") libtool: link: ( cd "fortran/.libs" && rm -f "libclipper-fortran.la" && ln -s "../libclipper-fortran.la" "libclipper-fortran.la" ) +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o minimol/libclipper-minimol.la -rpath /usr/lib/arm-linux-gnueabihf minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb2 -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/14/crtbeginS.o minimol/.libs/minimol.o minimol/.libs/container_minimol.o minimol/.libs/minimol_data.o minimol/.libs/minimol_io.o minimol/.libs/minimol_seq.o minimol/.libs/minimol_utils.o -Wl,-rpath -Wl,/build/reproducible-path/clipper-2.1.20201109/clipper/core/.libs -Wl,-rpath -Wl,/build/reproducible-path/clipper-2.1.20201109/clipper/mmdb/.libs core/.libs/libclipper-core.so mmdb/.libs/libclipper-mmdb.so -lmmdb2 -L/usr/lib/gcc/arm-linux-gnueabihf/14 -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/14/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-minimol.so.2 -o minimol/.libs/libclipper-minimol.so.2.0.1 libtool: link: (cd "minimol/.libs" && rm -f "libclipper-minimol.so.2" && ln -s "libclipper-minimol.so.2.0.1" "libclipper-minimol.so.2") libtool: link: (cd "minimol/.libs" && rm -f "libclipper-minimol.so" && ln -s "libclipper-minimol.so.2.0.1" "libclipper-minimol.so") @@ -3494,7 +3525,12 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o cns/libclipper-cns.la -rpath /usr/lib/arm-linux-gnueabihf cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o ccp4/libclipper-ccp4.la -rpath /usr/lib/arm-linux-gnueabihf ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm +libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/14/crtbeginS.o ccp4/.libs/ccp4_mtz_types.o ccp4/.libs/ccp4_mtz_io.o ccp4/.libs/ccp4_map_io.o ccp4/.libs/ccp4_utils.o -Wl,-rpath -Wl,/build/reproducible-path/clipper-2.1.20201109/clipper/core/.libs core/.libs/libclipper-core.so -lccp4c -L/usr/lib/gcc/arm-linux-gnueabihf/14 -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/14/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-ccp4.so.2 -o ccp4/.libs/libclipper-ccp4.so.2.0.1 +libtool: link: (cd "ccp4/.libs" && rm -f "libclipper-ccp4.so.2" && ln -s "libclipper-ccp4.so.2.0.1" "libclipper-ccp4.so.2") +libtool: link: (cd "ccp4/.libs" && rm -f "libclipper-ccp4.so" && ln -s "libclipper-ccp4.so.2.0.1" "libclipper-ccp4.so") +libtool: link: ( cd "ccp4/.libs" && rm -f "libclipper-ccp4.la" && ln -s "../libclipper-ccp4.la" "libclipper-ccp4.la" ) +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o cns/libclipper-cns.la -rpath /usr/lib/arm-linux-gnueabihf cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/14/crtbeginS.o cns/.libs/cns_hkl_io.o cns/.libs/cns_map_io.o -Wl,-rpath -Wl,/build/reproducible-path/clipper-2.1.20201109/clipper/core/.libs core/.libs/libclipper-core.so -L/usr/lib/gcc/arm-linux-gnueabihf/14 -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/14/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-cns.so.2 -o cns/.libs/libclipper-cns.so.2.0.1 libtool: link: (cd "cns/.libs" && rm -f "libclipper-cns.so.2" && ln -s "libclipper-cns.so.2.0.1" "libclipper-cns.so.2") libtool: link: (cd "cns/.libs" && rm -f "libclipper-cns.so" && ln -s "libclipper-cns.so.2.0.1" "libclipper-cns.so") @@ -3510,7 +3546,7 @@ make[2]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109' make[1]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109' dh_auto_test "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" - make -j3 check "TESTSUITEFLAGS=-j3 --verbose" VERBOSE=1 + make -j4 check "TESTSUITEFLAGS=-j4 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/clipper-2.1.20201109' Making check in clipper make[2]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper' @@ -3533,6 +3569,7 @@ g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o rfltest.o rfltest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o sgtest.o sgtest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o symtest.o symtest.cpp +g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o ccad.o ccad.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, @@ -3540,7 +3577,7 @@ from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, - from symtest.cpp:1: + from sgtest.cpp:1: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ @@ -3551,7 +3588,7 @@ from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, - from sgtest.cpp:1: + from rfltest.cpp:1: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ @@ -3562,11 +3599,10 @@ from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, - from rfltest.cpp:1: + from symtest.cpp:1: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ -g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o ccad.o ccad.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, @@ -3590,6 +3626,18 @@ ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ +g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o maptest.o maptest.cpp +In file included from ../clipper/core/clipper_types.h:49, + from ../clipper/core/cell.h:50, + from ../clipper/core/coords.h:49, + from ../clipper/core/container.h:49, + from ../clipper/core/container_types.h:49, + from ../clipper/core/container_hkl.h:49, + from ../clipper/clipper.h:7, + from maptest.cpp:4: +../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 + 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } + | ^~~~~~~~ In file included from /usr/include/c++/14/vector:72, from ../clipper/core/clipper_memory.h:50, from ../clipper/core/clipper_types.h:50: @@ -3608,7 +3656,8 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o maptest.o maptest.cpp +g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o mtztest.o mtztest.cpp +g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o cmaplocal.o cmaplocal.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, @@ -3616,11 +3665,10 @@ from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, - from maptest.cpp:4: + from mtztest.cpp:1: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ -g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o mtztest.o mtztest.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, @@ -3628,11 +3676,12 @@ from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, - from mtztest.cpp:1: + from cmaplocal.cpp:4: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ -g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o cmaplocal.o cmaplocal.cpp +g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o ffttest.o ffttest.cpp +g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o sktest.o sktest.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, @@ -3640,11 +3689,10 @@ from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, - from cmaplocal.cpp:4: + from ffttest.cpp:6: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ -g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o ffttest.o ffttest.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, @@ -3652,11 +3700,11 @@ from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, - from ffttest.cpp:6: + from sktest.cpp:1: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ -g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o sktest.o sktest.cpp +g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o cnstest.o cnstest.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, @@ -3664,7 +3712,7 @@ from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, - from sktest.cpp:1: + from cnstest.cpp:1: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ @@ -3715,7 +3763,8 @@ /usr/include/c++/14/bits/stl_vector.h:1058:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1058 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o cnstest.o cnstest.cpp +g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o cns2mtz.o cns2mtz.cpp +g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o maketestdata.o maketestdata.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, @@ -3723,11 +3772,10 @@ from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, - from cnstest.cpp:1: + from maketestdata.cpp:4: ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ -g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o cns2mtz.o cns2mtz.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, @@ -3740,18 +3788,6 @@ ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ -g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o maketestdata.o maketestdata.cpp -In file included from ../clipper/core/clipper_types.h:49, - from ../clipper/core/cell.h:50, - from ../clipper/core/coords.h:49, - from ../clipper/core/container.h:49, - from ../clipper/core/container_types.h:49, - from ../clipper/core/container_hkl.h:49, - from ../clipper/clipper.h:7, - from maketestdata.cpp:4: -../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 - 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } - | ^~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -c -o sftest.o sftest.cpp In file included from ../clipper/core/clipper_types.h:49, from ../clipper/core/cell.h:50, @@ -3808,6 +3844,9 @@ ../clipper/core/clipper_util.h:73:5: warning: this decimal constant is unsigned only in ISO C90 73 | template inline static void set_null( T& t ) { t = T(-2147483648); } | ^~~~~~~~ +f77 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -c -o ftndemo.o ftndemo.f +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o rfltest rfltest.o ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o sgtest sgtest.o ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 In file included from /usr/include/c++/14/vector:72, from ../clipper/core/clipper_memory.h:50, from ../clipper/core/clipper_types.h:50: @@ -3815,8 +3854,17 @@ /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -f77 -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -c -o ftndemo.o ftndemo.f -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o rfltest rfltest.o ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 +libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/rfltest rfltest.o ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 +libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sgtest sgtest.o ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o symtest symtest.o ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o ccad ccad.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 +libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/symtest symtest.o ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 +libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ccad ccad.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o diffmap diffmap.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o maptest maptest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 +libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/diffmap diffmap.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o mtztest mtztest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 +libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/maptest maptest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 In file included from /usr/include/c++/14/vector:66: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, value_type) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void clipper::Array2d::resize(const int&, const int&, const T&) [with T = double]' at ../clipper/core/clipper_types.h:379:40, @@ -3855,45 +3903,33 @@ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/rfltest rfltest.o ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o sgtest sgtest.o ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 -libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sgtest sgtest.o ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o symtest symtest.o ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 -libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/symtest symtest.o ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o ccad ccad.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 -libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ccad ccad.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o diffmap diffmap.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 -libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/diffmap diffmap.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o maptest maptest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 -libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/maptest maptest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o mtztest mtztest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o cmaplocal cmaplocal.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/mtztest mtztest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o cmaplocal cmaplocal.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o ffttest ffttest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o ffttest ffttest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/cmaplocal cmaplocal.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o sktest sktest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ffttest ffttest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o sktest sktest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o cnstest cnstest.o ../clipper/cns/libclipper-cns.la ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o cnstest cnstest.o ../clipper/cns/libclipper-cns.la ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sktest sktest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o maketestdata maketestdata.o ../clipper/mmdb/libclipper-mmdb.la ../clipper/ccp4/libclipper-ccp4.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/cnstest cnstest.o ../clipper/cns/.libs/libclipper-cns.so ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o maketestdata maketestdata.o ../clipper/mmdb/libclipper-mmdb.la ../clipper/ccp4/libclipper-ccp4.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o sftest sftest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/mmdb/libclipper-mmdb.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o phstest phstest.o ../clipper/phs/libclipper-phs.la ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/maketestdata maketestdata.o ../clipper/mmdb/.libs/libclipper-mmdb.so ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 -libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sftest sftest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/mmdb/.libs/libclipper-mmdb.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o phstest phstest.o ../clipper/phs/libclipper-phs.la ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o ciftophs ciftophs.o ../clipper/phs/libclipper-phs.la ../clipper/cif/libclipper-cif.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o ciftophs ciftophs.o ../clipper/phs/libclipper-phs.la ../clipper/cif/libclipper-cif.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/phstest phstest.o ../clipper/phs/.libs/libclipper-phs.so ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o ftndemo ftndemo.o ../clipper/fortran/libclipper-fortran.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/gcc/arm-linux-gnueabihf/14 -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lgfortran -lm -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ciftophs ciftophs.o ../clipper/phs/.libs/libclipper-phs.so ../clipper/cif/.libs/libclipper-cif.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o ftndemo ftndemo.o ../clipper/fortran/libclipper-fortran.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/gcc/arm-linux-gnueabihf/14 -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lgfortran -lm -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ftndemo ftndemo.o ../clipper/fortran/.libs/libclipper-fortran.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/gcc/arm-linux-gnueabihf/14 -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lgfortran -lm -lmmdb2 -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o cns2mtz cns2mtz.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/mmdb/libclipper-mmdb.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o sftest sftest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/mmdb/libclipper-mmdb.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 +libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sftest sftest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/mmdb/.libs/libclipper-mmdb.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -Wl,-z,now -o cns2mtz cns2mtz.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/mmdb/libclipper-mmdb.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/cns2mtz cns2mtz.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/mmdb/.libs/libclipper-mmdb.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/arm-linux-gnueabihf -lmmdb2 make[3]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/examples' make[2]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109/examples' make[2]: Entering directory '/build/reproducible-path/clipper-2.1.20201109' make[2]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109' make[1]: Leaving directory '/build/reproducible-path/clipper-2.1.20201109' - rm -fr -- /tmp/dh-xdg-rundir-NrDJVCIg + rm -fr -- /tmp/dh-xdg-rundir-t0yM0NFx create-stamp debian/debhelper-build-stamp dh_testroot "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_prep "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" @@ -3909,7 +3945,7 @@ make[3]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper/core' make[4]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper/core' /usr/bin/mkdir -p '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf' - /bin/bash ../../libtool --mode=install /usr/bin/install -c libclipper-core.la '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf' + /bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-core.la '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/libclipper-core.so.2.0.1 /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-core.so.2.0.1 libclipper-core.so.2 || { rm -f libclipper-core.so.2 && ln -s libclipper-core.so.2.0.1 libclipper-core.so.2; }; }) libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-core.so.2.0.1 libclipper-core.so || { rm -f libclipper-core.so && ln -s libclipper-core.so.2.0.1 libclipper-core.so; }; }) @@ -3924,9 +3960,9 @@ make[3]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper/contrib' make[4]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper/contrib' /usr/bin/mkdir -p '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf' - /bin/bash ../../libtool --mode=install /usr/bin/install -c libclipper-contrib.la '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf' + /bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-contrib.la '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: warning: relinking 'libclipper-contrib.la' -libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper/contrib; /bin/bash "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o libclipper-contrib.la -rpath /usr/lib/arm-linux-gnueabihf convolution_search.lo sfcalc.lo edcalc.lo sfcalc_obs.lo fffear.lo sfscale.lo function_object_bases.lo sfweight.lo mapfilter.lo skeleton.lo originmatch.lo test_contrib.lo ../core/libclipper-core.la -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) +libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper/contrib; /bin/sh "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o libclipper-contrib.la -rpath /usr/lib/arm-linux-gnueabihf convolution_search.lo sfcalc.lo edcalc.lo sfcalc_obs.lo fffear.lo sfscale.lo function_object_bases.lo sfweight.lo mapfilter.lo skeleton.lo originmatch.lo test_contrib.lo ../core/libclipper-core.la -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/14/crtbeginS.o .libs/convolution_search.o .libs/sfcalc.o .libs/edcalc.o .libs/sfcalc_obs.o .libs/fffear.o .libs/sfscale.o .libs/function_object_bases.o .libs/sfweight.o .libs/mapfilter.o .libs/skeleton.o .libs/originmatch.o .libs/test_contrib.o -L/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -L/usr/lib/gcc/arm-linux-gnueabihf/14 -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/14/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-contrib.so.2 -o .libs/libclipper-contrib.so.2.0.1 libtool: install: /usr/bin/install -c .libs/libclipper-contrib.so.2.0.1T /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-contrib.so.2.0.1 libclipper-contrib.so.2 || { rm -f libclipper-contrib.so.2 && ln -s libclipper-contrib.so.2.0.1 libclipper-contrib.so.2; }; }) @@ -3940,51 +3976,51 @@ make[3]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper' make[4]: Entering directory '/build/reproducible-path/clipper-2.1.20201109/clipper' /usr/bin/mkdir -p '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf' - /bin/bash ../libtool --mode=install /usr/bin/install -c mmdb/libclipper-mmdb.la minimol/libclipper-minimol.la phs/libclipper-phs.la cif/libclipper-cif.la ccp4/libclipper-ccp4.la cns/libclipper-cns.la fortran/libclipper-fortran.la '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf' + /bin/sh ../libtool --mode=install /usr/bin/install -c mmdb/libclipper-mmdb.la minimol/libclipper-minimol.la phs/libclipper-phs.la cif/libclipper-cif.la ccp4/libclipper-ccp4.la cns/libclipper-cns.la fortran/libclipper-fortran.la '/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: warning: relinking 'mmdb/libclipper-mmdb.la' -libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper; /bin/bash "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o mmdb/libclipper-mmdb.la -rpath /usr/lib/arm-linux-gnueabihf mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb2 -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) +libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper; /bin/sh "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o mmdb/libclipper-mmdb.la -rpath /usr/lib/arm-linux-gnueabihf mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb2 -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/14/crtbeginS.o mmdb/.libs/clipper_mmdb.o -L/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -lmmdb2 -L/usr/lib/gcc/arm-linux-gnueabihf/14 -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/14/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-mmdb.so.2 -o mmdb/.libs/libclipper-mmdb.so.2.0.1 libtool: install: /usr/bin/install -c mmdb/.libs/libclipper-mmdb.so.2.0.1T /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-mmdb.so.2.0.1 libclipper-mmdb.so.2 || { rm -f libclipper-mmdb.so.2 && ln -s libclipper-mmdb.so.2.0.1 libclipper-mmdb.so.2; }; }) libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-mmdb.so.2.0.1 libclipper-mmdb.so || { rm -f libclipper-mmdb.so && ln -s libclipper-mmdb.so.2.0.1 libclipper-mmdb.so; }; }) libtool: install: /usr/bin/install -c mmdb/.libs/libclipper-mmdb.lai /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.la libtool: warning: relinking 'minimol/libclipper-minimol.la' -libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper; /bin/bash "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o minimol/libclipper-minimol.la -rpath /usr/lib/arm-linux-gnueabihf minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb2 -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) +libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper; /bin/sh "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o minimol/libclipper-minimol.la -rpath /usr/lib/arm-linux-gnueabihf minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb2 -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/14/crtbeginS.o minimol/.libs/minimol.o minimol/.libs/container_minimol.o minimol/.libs/minimol_data.o minimol/.libs/minimol_io.o minimol/.libs/minimol_seq.o minimol/.libs/minimol_utils.o -L/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -lclipper-mmdb -lmmdb2 -L/usr/lib/gcc/arm-linux-gnueabihf/14 -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/14/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-minimol.so.2 -o minimol/.libs/libclipper-minimol.so.2.0.1 libtool: install: /usr/bin/install -c minimol/.libs/libclipper-minimol.so.2.0.1T /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-minimol.so.2.0.1 libclipper-minimol.so.2 || { rm -f libclipper-minimol.so.2 && ln -s libclipper-minimol.so.2.0.1 libclipper-minimol.so.2; }; }) libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-minimol.so.2.0.1 libclipper-minimol.so || { rm -f libclipper-minimol.so && ln -s libclipper-minimol.so.2.0.1 libclipper-minimol.so; }; }) libtool: install: /usr/bin/install -c minimol/.libs/libclipper-minimol.lai /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-minimol.la libtool: warning: relinking 'phs/libclipper-phs.la' -libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper; /bin/bash "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o phs/libclipper-phs.la -rpath /usr/lib/arm-linux-gnueabihf phs/phs_io.lo core/libclipper-core.la -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) +libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper; /bin/sh "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o phs/libclipper-phs.la -rpath /usr/lib/arm-linux-gnueabihf phs/phs_io.lo core/libclipper-core.la -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/14/crtbeginS.o phs/.libs/phs_io.o -L/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -L/usr/lib/gcc/arm-linux-gnueabihf/14 -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/14/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-phs.so.2 -o phs/.libs/libclipper-phs.so.2.0.1 libtool: install: /usr/bin/install -c phs/.libs/libclipper-phs.so.2.0.1T /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-phs.so.2.0.1 libclipper-phs.so.2 || { rm -f libclipper-phs.so.2 && ln -s libclipper-phs.so.2.0.1 libclipper-phs.so.2; }; }) libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-phs.so.2.0.1 libclipper-phs.so || { rm -f libclipper-phs.so && ln -s libclipper-phs.so.2.0.1 libclipper-phs.so; }; }) libtool: install: /usr/bin/install -c phs/.libs/libclipper-phs.lai /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-phs.la libtool: warning: relinking 'cif/libclipper-cif.la' -libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper; /bin/bash "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o cif/libclipper-cif.la -rpath /usr/lib/arm-linux-gnueabihf cif/cif_data_io.lo core/libclipper-core.la -lmmdb2 -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) +libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper; /bin/sh "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o cif/libclipper-cif.la -rpath /usr/lib/arm-linux-gnueabihf cif/cif_data_io.lo core/libclipper-core.la -lmmdb2 -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/14/crtbeginS.o cif/.libs/cif_data_io.o -L/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -lmmdb2 -L/usr/lib/gcc/arm-linux-gnueabihf/14 -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/14/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-cif.so.2 -o cif/.libs/libclipper-cif.so.2.0.1 libtool: install: /usr/bin/install -c cif/.libs/libclipper-cif.so.2.0.1T /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-cif.so.2.0.1 libclipper-cif.so.2 || { rm -f libclipper-cif.so.2 && ln -s libclipper-cif.so.2.0.1 libclipper-cif.so.2; }; }) libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-cif.so.2.0.1 libclipper-cif.so || { rm -f libclipper-cif.so && ln -s libclipper-cif.so.2.0.1 libclipper-cif.so; }; }) libtool: install: /usr/bin/install -c cif/.libs/libclipper-cif.lai /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cif.la libtool: warning: relinking 'ccp4/libclipper-ccp4.la' -libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper; /bin/bash "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o ccp4/libclipper-ccp4.la -rpath /usr/lib/arm-linux-gnueabihf ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) +libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper; /bin/sh "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o ccp4/libclipper-ccp4.la -rpath /usr/lib/arm-linux-gnueabihf ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/14/crtbeginS.o ccp4/.libs/ccp4_mtz_types.o ccp4/.libs/ccp4_mtz_io.o ccp4/.libs/ccp4_map_io.o ccp4/.libs/ccp4_utils.o -L/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -lccp4c -L/usr/lib/gcc/arm-linux-gnueabihf/14 -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/14/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-ccp4.so.2 -o ccp4/.libs/libclipper-ccp4.so.2.0.1 libtool: install: /usr/bin/install -c ccp4/.libs/libclipper-ccp4.so.2.0.1T /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-ccp4.so.2.0.1 libclipper-ccp4.so.2 || { rm -f libclipper-ccp4.so.2 && ln -s libclipper-ccp4.so.2.0.1 libclipper-ccp4.so.2; }; }) libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-ccp4.so.2.0.1 libclipper-ccp4.so || { rm -f libclipper-ccp4.so && ln -s libclipper-ccp4.so.2.0.1 libclipper-ccp4.so; }; }) libtool: install: /usr/bin/install -c ccp4/.libs/libclipper-ccp4.lai /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.la libtool: warning: relinking 'cns/libclipper-cns.la' -libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper; /bin/bash "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o cns/libclipper-cns.la -rpath /usr/lib/arm-linux-gnueabihf cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) +libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper; /bin/sh "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o cns/libclipper-cns.la -rpath /usr/lib/arm-linux-gnueabihf cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/14/crtbeginS.o cns/.libs/cns_hkl_io.o cns/.libs/cns_map_io.o -L/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -L/usr/lib/gcc/arm-linux-gnueabihf/14 -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/14/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-cns.so.2 -o cns/.libs/libclipper-cns.so.2.0.1 libtool: install: /usr/bin/install -c cns/.libs/libclipper-cns.so.2.0.1T /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-cns.so.2.0.1 libclipper-cns.so.2 || { rm -f libclipper-cns.so.2 && ln -s libclipper-cns.so.2.0.1 libclipper-cns.so.2; }; }) libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-cns.so.2.0.1 libclipper-cns.so || { rm -f libclipper-cns.so && ln -s libclipper-cns.so.2.0.1 libclipper-cns.so; }; }) libtool: install: /usr/bin/install -c cns/.libs/libclipper-cns.lai /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cns.la libtool: warning: relinking 'fortran/libclipper-fortran.la' -libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper; /bin/bash "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o fortran/libclipper-fortran.la -rpath /usr/lib/arm-linux-gnueabihf fortran/f_interface.lo core/libclipper-core.la contrib/libclipper-contrib.la -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) +libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/clipper; /bin/sh "/build/reproducible-path/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/clipper-2.1.20201109=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -Wl,-z,now -o fortran/libclipper-fortran.la -rpath /usr/lib/arm-linux-gnueabihf fortran/f_interface.lo core/libclipper-core.la contrib/libclipper-contrib.la -lm -inst-prefix-dir /build/reproducible-path/clipper-2.1.20201109/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/14/crtbeginS.o fortran/.libs/f_interface.o -L/build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -lclipper-contrib -L/usr/lib/gcc/arm-linux-gnueabihf/14 -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/14/../../.. -L/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/14/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/14/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libclipper-fortran.so.2 -o fortran/.libs/libclipper-fortran.so.2.0.1 libtool: install: /usr/bin/install -c fortran/.libs/libclipper-fortran.so.2.0.1T /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 libtool: install: (cd /build/reproducible-path/clipper-2.1.20201109/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-fortran.so.2.0.1 libclipper-fortran.so.2 || { rm -f libclipper-fortran.so.2 && ln -s libclipper-fortran.so.2.0.1 libclipper-fortran.so.2; }; }) @@ -4044,12 +4080,12 @@ install -m0755 -d debian/libclipper-doc/usr/share/doc-base/ install -p -m0644 debian/libclipper-doc.doc-base debian/libclipper-doc/usr/share/doc-base/libclipper-doc.clipper dh_installchangelogs "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" - install -m0755 -d debian/libclipper-dev/usr/share/doc/libclipper-dev - install -p -m0644 debian/.debhelper/generated/libclipper-dev/dh_installchangelogs.dch.trimmed debian/libclipper-dev/usr/share/doc/libclipper-dev/changelog.Debian - install -p -m0644 ./ChangeLog debian/libclipper-dev/usr/share/doc/libclipper-dev/changelog install -m0755 -d debian/libclipper2/usr/share/doc/libclipper2 install -p -m0644 debian/.debhelper/generated/libclipper2/dh_installchangelogs.dch.trimmed debian/libclipper2/usr/share/doc/libclipper2/changelog.Debian install -p -m0644 ./ChangeLog debian/libclipper2/usr/share/doc/libclipper2/changelog + install -m0755 -d debian/libclipper-dev/usr/share/doc/libclipper-dev + install -p -m0644 debian/.debhelper/generated/libclipper-dev/dh_installchangelogs.dch.trimmed debian/libclipper-dev/usr/share/doc/libclipper-dev/changelog.Debian + install -p -m0644 ./ChangeLog debian/libclipper-dev/usr/share/doc/libclipper-dev/changelog install -m0755 -d debian/libclipper-doc/usr/share/doc/libclipper-doc install -p -m0644 debian/.debhelper/generated/libclipper-doc/dh_installchangelogs.dch.trimmed debian/libclipper-doc/usr/share/doc/libclipper-doc/changelog.Debian install -p -m0644 ./ChangeLog debian/libclipper-doc/usr/share/doc/libclipper-doc/changelog @@ -4091,199 +4127,199 @@ install -p -m0644 debian/libclipper2.lintian-overrides debian/libclipper2/usr/share/lintian/overrides/libclipper2 dh_perl "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_link "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" + rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-phs.so + ln -s libclipper-phs.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-phs.so rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so ln -s libclipper-ccp4.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so - rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so - ln -s libclipper-contrib.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so + rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-core.so + ln -s libclipper-core.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-core.so rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so ln -s libclipper-minimol.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so - rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-cif.so - ln -s libclipper-cif.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-cif.so rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-cns.so ln -s libclipper-cns.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-cns.so - rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-phs.so - ln -s libclipper-phs.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-phs.so - rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so - ln -s libclipper-mmdb.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so - rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-core.so - ln -s libclipper-core.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-core.so + rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-cif.so + ln -s libclipper-cif.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-cif.so rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so ln -s libclipper-fortran.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so - rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2 - ln -s libclipper-minimol.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2 - rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2 - ln -s libclipper-cif.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2 - rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2 - ln -s libclipper-core.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2 + rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so + ln -s libclipper-contrib.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so + rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so + ln -s libclipper-mmdb.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so + rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2 + ln -s libclipper-fortran.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2 rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2 ln -s libclipper-mmdb.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2 + rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2 + ln -s libclipper-cif.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2 + rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2 + ln -s libclipper-contrib.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2 + rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2 + ln -s libclipper-cns.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2 rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2 ln -s libclipper-phs.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2 - rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2 - ln -s libclipper-fortran.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2 + rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2 + ln -s libclipper-core.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2 + rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2 + ln -s libclipper-minimol.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2 rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2 ln -s libclipper-ccp4.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2 - rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2 - ln -s libclipper-cns.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2 - rm -f debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2 - ln -s libclipper-contrib.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2 dh_strip_nondeterminism "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" Using 1687186854 as canonical time - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CXmap.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Test__base.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__sparse__p1__xh.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CNXmap.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/nav_fd.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1U__aniso__frac.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleI1I2.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__gaussian.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info_1_1HKL__reference__base.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Prob__phi__2d.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__base.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__p1.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/nav_g.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Container.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1Flag.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1AtomSF.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__data.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__sigmaa__omegaa.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/closed.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Curv__frac.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1RTop__orth.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1U__aniso__orth.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Resolution__ordinal.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__orth.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info_1_1HKL__reference__coord.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/bc_s.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__expcubic.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base_1_1Map__reference__coord.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__sparse__p1__base.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap__base.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Prob__phi__2d.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1String.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1ResolutionFn__nonlinear.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__reci__frac.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/hierarchy.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/nav_h.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__binner.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Datatype__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Mat33sym.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Isymop.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base_1_1Map__reference__index.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1F__phi.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__aniso__gaussian.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/sync_off.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1F__sigF.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CCell.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1I__sigI.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CGrid__sampling.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1ResolutionFn.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/splitbar.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__frac.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Cell__descr.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/nav_hd.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1I__sigI__ano.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Vec3.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/open.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__dtor.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__data__cacheobj.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Generic__ordinal.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1AtomSF.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleI1I2.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Cell.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Property__base.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grid__sampling.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CResolution.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__meanEnth.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_ad.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_s.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__gaussian.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__generic.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Spgr__descr.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleLogI1I2.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grad__map.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/bc_sd.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_h.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1RTop__frac.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info_1_1HKL__reference__index.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__data.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Test__core.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Ramachandran.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/map_p1.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_a.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__log__gaussian.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Atom__list.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap__base_1_1Map__reference__base.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Matrix.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/include.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleF1F2.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_bd.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__map.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__base.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap__base_1_1Map__reference__index.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1Flag.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__grid.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1RTop.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__sparse__p1__hx.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1E__sigE__ano.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Histogram.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NX__operator.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1F__sigF__ano.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CGrid__sampling.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1Phi__fom.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/nav_g.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleLogF1F2.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__reci__orth.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleEsq.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__sigmaa.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1I__sigI.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Spgr__descr_1_1Symop__codes.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__operator.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__p1.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/hkl_objs.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CSpacegroup.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__orth.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CNXmap__operator.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_sd.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1U__aniso__orth.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Curv__orth.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Array2d.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Range__sampling.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1Flag__bool.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CHKL__info.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/sync_on.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__grid.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Atom__list.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__base.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/bc_sd.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Isymop.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Spgr__descr.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Property.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__spline.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CCell.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/nav_f.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1F__sigF.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1String.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/map_p1.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grid.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__sparse__p1__xh.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grad__orth.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__base.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1E__sigE.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grad__frac.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1Flag__bool.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__generic.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_hd.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Cell.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_b.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__warn.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/hkl_objs.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__sigmaa.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Vec3.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1RTop.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1I__sigI__ano.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Generic__ordinal.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/include.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1Phi__fom.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1ABCD.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grad__map.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NX__operator.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__sparse__p1__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Resolution.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_b.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__base.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_hd.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__info.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Spacegroup.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/splitbard.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_a.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1E__sigE.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1F__sigF__ano.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__reci__frac.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/bc_s.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__reci__orth.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__binner.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__operator.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CHKL__data.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/hierarchy.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__expcubic.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base_1_1Map__reference__index.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__data__base.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Property.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1ABCD.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1D__sigD.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grad__frac.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1U__aniso__frac.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CResolution.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/closed.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Curv__map.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_h.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap__base_1_1Map__reference__coord.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Cell__descr.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__meanFnth.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__frac.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Curv__frac.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CHKL__info.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base_1_1Map__reference__coord.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__info.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Test__base.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Property__base.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Resolution__ordinal.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/map_p2.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__dtor.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info_1_1HKL__reference__index.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__linear.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Array2d.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap__base_1_1Map__reference__base.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grid__range.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Range__sampling.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleEsq.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__fatal.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__sparse__p1__hx.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Spacegroup.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Ramachandran.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/nav_h.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/open.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Matrix.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Test__core.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Datatype__base.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleLogI1I2.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CXmap.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__ctor.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__data__cacheobj.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleLogF1F2.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1F__phi.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grid__sampling.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/nav_hd.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap__base_1_1Map__reference__index.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_ad.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Spgr__descr_1_1Symop__codes.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Histogram.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1AtomShapeFn.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CNXmap.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CNXmap__operator.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Symop.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/nav_fd.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__map.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info_1_1HKL__reference__coord.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1RTop__frac.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grad__orth.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/sync_on.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__aniso__gaussian.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1ResolutionFn__nonlinear.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__log__aniso__gaussian.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CHKL__data.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base_1_1Map__reference__base.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_sd.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grid__range.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap__base_1_1Map__reference__coord.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleF1F2.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__linear.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info_1_1HKL__reference__base.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__base.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/nav_f.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_s.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/splitbar.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__base.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Curv__map.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/map_p2.png using File::StripNondeterminism::handlers::png - Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__meanFnth.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CSpacegroup.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Symop.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__meanEnth.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/splitbard.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/sync_off.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1RTop__orth.png using File::StripNondeterminism::handlers::png + Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base_1_1Map__reference__base.png using File::StripNondeterminism::handlers::png dh_compress "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" cd debian/libclipper-dev cd debian/libclipper2 cd debian/libclipper-doc - chmod a-x usr/share/doc/libclipper-dev/changelog usr/share/doc/libclipper-dev/changelog.Debian chmod a-x usr/share/doc/libclipper2/changelog usr/share/doc/libclipper2/changelog.Debian + chmod a-x usr/share/doc/libclipper-dev/changelog usr/share/doc/libclipper-dev/changelog.Debian gzip -9nf usr/share/doc/libclipper2/changelog usr/share/doc/libclipper2/changelog.Debian gzip -9nf usr/share/doc/libclipper-dev/changelog usr/share/doc/libclipper-dev/changelog.Debian chmod a-x usr/share/doc/libclipper-doc/changelog usr/share/doc/libclipper-doc/changelog.Debian @@ -4305,8 +4341,8 @@ find debian/libclipper2 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper2/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w - find debian/libclipper-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libclipper-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/libclipper-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libclipper-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_missing "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_dwz -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" @@ -4315,26 +4351,16 @@ objcopy --compress-debug-sections debian/libclipper2/usr/lib/debug/.dwz/arm-linux-gnueabihf/libclipper2.debug chmod 0644 -- debian/libclipper2/usr/lib/debug/.dwz/arm-linux-gnueabihf/libclipper2.debug dh_strip -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" - install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/73 - objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/73/f80692d4a254fe69c30d826141d4c1b0e20e55.debug - chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/73/f80692d4a254fe69c30d826141d4c1b0e20e55.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 - objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/73/f80692d4a254fe69c30d826141d4c1b0e20e55.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/89 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/89/326a4100d596925c30064e4a5c4d6e2edde89b.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/89/326a4100d596925c30064e4a5c4d6e2edde89b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/89/326a4100d596925c30064e4a5c4d6e2edde89b.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 - install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/4a - objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/4a/731f02e53f31355eed43e6156932586340c6a6.debug - chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/4a/731f02e53f31355eed43e6156932586340c6a6.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 - objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/4a/731f02e53f31355eed43e6156932586340c6a6.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 - install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/b2 - objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/b2/2f984b5fad6414ce332f25a886925db9cb9ee4.debug - chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/b2/2f984b5fad6414ce332f25a886925db9cb9ee4.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 - objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/b2/2f984b5fad6414ce332f25a886925db9cb9ee4.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 + install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/73 + objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/73/f80692d4a254fe69c30d826141d4c1b0e20e55.debug + chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/73/f80692d4a254fe69c30d826141d4c1b0e20e55.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 + objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/73/f80692d4a254fe69c30d826141d4c1b0e20e55.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/f3 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/f3/d9ec92b2d792cd6afc8b09e83a9fe453cbd38d.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/f3/d9ec92b2d792cd6afc8b09e83a9fe453cbd38d.debug @@ -4345,21 +4371,31 @@ chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/6f/5d95867ecd2e1b2110f68af6ca7469ce4dc29d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/6f/5d95867ecd2e1b2110f68af6ca7469ce4dc29d.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 - install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/fb - objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/fb/7e388e35fb8673dbe9f2e96487d8deffac8ad7.debug - chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/fb/7e388e35fb8673dbe9f2e96487d8deffac8ad7.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 - objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/fb/7e388e35fb8673dbe9f2e96487d8deffac8ad7.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 - install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/9f - objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/9f/84ca05d47a8317725f1f79c562012ce6d86650.debug - chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/9f/84ca05d47a8317725f1f79c562012ce6d86650.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 - objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/9f/84ca05d47a8317725f1f79c562012ce6d86650.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/d9 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/d9/9648cfe3fadd6a43ef6bfa801c47a209486474.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/d9/9648cfe3fadd6a43ef6bfa801c47a209486474.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/d9/9648cfe3fadd6a43ef6bfa801c47a209486474.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 + install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/b2 + objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/b2/2f984b5fad6414ce332f25a886925db9cb9ee4.debug + chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/b2/2f984b5fad6414ce332f25a886925db9cb9ee4.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 + objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/b2/2f984b5fad6414ce332f25a886925db9cb9ee4.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 + install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/4a + objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/4a/731f02e53f31355eed43e6156932586340c6a6.debug + chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/4a/731f02e53f31355eed43e6156932586340c6a6.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 + objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/4a/731f02e53f31355eed43e6156932586340c6a6.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 + install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/9f + objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/9f/84ca05d47a8317725f1f79c562012ce6d86650.debug + chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/9f/84ca05d47a8317725f1f79c562012ce6d86650.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 + objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/9f/84ca05d47a8317725f1f79c562012ce6d86650.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 + install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/fb + objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/fb/7e388e35fb8673dbe9f2e96487d8deffac8ad7.debug + chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/fb/7e388e35fb8673dbe9f2e96487d8deffac8ad7.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 + objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/fb/7e388e35fb8673dbe9f2e96487d8deffac8ad7.debug debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/libclipper2/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/libclipper2/usr/lib/debug/.dwz @@ -4384,13 +4420,13 @@ mv debian/.debhelper/generated/libclipper2/triggers.new debian/.debhelper/generated/libclipper2/triggers dh_shlibdeps -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper2/DEBIAN - dpkg-shlibdeps -Tdebian/libclipper2.substvars debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 + dpkg-shlibdeps -Tdebian/libclipper2.substvars debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged -dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libclipper2/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 found in none of the libraries dh_installdeb "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -m0755 -d debian/libclipper-dev/DEBIAN install -m0755 -d debian/libclipper2/DEBIAN @@ -4410,9 +4446,9 @@ echo misc:Pre-Depends= >> debian/libclipper2.substvars install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/DEBIAN dpkg-gencontrol -plibclipper2 -ldebian/changelog -Tdebian/libclipper2.substvars -cdebian/control -Pdebian/.debhelper/libclipper2/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libclipper2-dbgsym "-DDepends=libclipper2 (= \${binary:Version})" "-DDescription=debug symbols for libclipper2" "-DBuild-Ids=4a731f02e53f31355eed43e6156932586340c6a6 6f5d95867ecd2e1b2110f68af6ca7469ce4dc29d 73f80692d4a254fe69c30d826141d4c1b0e20e55 89326a4100d596925c30064e4a5c4d6e2edde89b 9f84ca05d47a8317725f1f79c562012ce6d86650 b22f984b5fad6414ce332f25a886925db9cb9ee4 d99648cfe3fadd6a43ef6bfa801c47a209486474 f3d9ec92b2d792cd6afc8b09e83a9fe453cbd38d fb7e388e35fb8673dbe9f2e96487d8deffac8ad7" -DSection=debug "-DReplaces=libclipper2-dbg (<< 2.1.20160809-1~)" "-DBreaks=libclipper2-dbg (<< 2.1.20160809-1~)" + chmod 0644 -- debian/libclipper-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibclipper2 -ldebian/changelog -Tdebian/libclipper2.substvars -cdebian/control -Pdebian/libclipper2 - chmod 0644 -- debian/libclipper-dev/DEBIAN/control chmod 0644 -- debian/libclipper-doc/DEBIAN/control chmod 0644 -- debian/libclipper2/DEBIAN/control dh_md5sums "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" @@ -4430,12 +4466,12 @@ chmod 0644 -- debian/libclipper-doc/DEBIAN/md5sums dh_builddeb "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dpkg-deb --root-owner-group --build debian/libclipper-dev .. + dpkg-deb --root-owner-group --build debian/libclipper2 .. dpkg-deb --root-owner-group --build debian/.debhelper/libclipper2/dbgsym-root .. -dpkg-deb: building package 'libclipper2-dbgsym' in '../libclipper2-dbgsym_2.1.20201109-2_armhf.deb'. + dpkg-deb --root-owner-group --build debian/libclipper-doc .. dpkg-deb: building package 'libclipper-dev' in '../libclipper-dev_2.1.20201109-2_armhf.deb'. - dpkg-deb --root-owner-group --build debian/libclipper2 .. dpkg-deb: building package 'libclipper2' in '../libclipper2_2.1.20201109-2_armhf.deb'. - dpkg-deb --root-owner-group --build debian/libclipper-doc .. +dpkg-deb: building package 'libclipper2-dbgsym' in '../libclipper2-dbgsym_2.1.20201109-2_armhf.deb'. dpkg-deb: building package 'libclipper-doc' in '../libclipper-doc_2.1.20201109-2_all.deb'. dpkg-genbuildinfo --build=binary -O../clipper_2.1.20201109-2_armhf.buildinfo dpkg-genchanges --build=binary -O../clipper_2.1.20201109-2_armhf.changes @@ -4444,12 +4480,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/4540/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/4540/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/19137 and its subdirectories -I: Current time: Fri Nov 22 18:46:43 -12 2024 -I: pbuilder-time-stamp: 1732344403 +I: removing directory /srv/workspace/pbuilder/4540 and its subdirectories +I: Current time: Sat Nov 23 20:51:53 +14 2024 +I: pbuilder-time-stamp: 1732344713