Diff of the two buildlogs: -- --- b1/build.log 2025-03-07 04:38:41.052280920 +0000 +++ b2/build.log 2025-03-07 04:40:31.999275387 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Mar 6 16:35:06 -12 2025 -I: pbuilder-time-stamp: 1741322106 +I: Current time: Fri Mar 7 18:38:50 +14 2025 +I: pbuilder-time-stamp: 1741322330 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -28,52 +28,84 @@ dpkg-source: info: applying 0005-skip-32-bit.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/13316/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/6035/tmp/hooks/D01_modify_environment starting +debug: Running on virt64z. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 7 04:39 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/6035/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/6035/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='d17962add31e4c8fabb3d1f8f0a1a10b' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='13316' - PS1='# ' - PS2='> ' + INVOCATION_ID=b7ded433d1b744199c812ef2b76f947d + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=6035 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vyLO1BAH/pbuilderrc_c6hB --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vyLO1BAH/b1 --logfile b1/build.log golang-github-biogo-hts_1.4.5+dfsg1-2.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vyLO1BAH/pbuilderrc_fGZP --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vyLO1BAH/b2 --logfile b2/build.log golang-github-biogo-hts_1.4.5+dfsg1-2.dsc' + SUDO_GID=110 + SUDO_UID=103 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux ff4a 6.1.0-31-armmp-lpae #1 SMP Debian 6.1.128-1 (2025-02-07) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/13316/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/6035/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -168,7 +200,7 @@ Get: 49 http://deb.debian.org/debian unstable/main armhf golang-github-kr-pretty-dev all 0.3.1-1 [11.9 kB] Get: 50 http://deb.debian.org/debian unstable/main armhf golang-github-ulikunitz-xz-dev all 0.5.6-2 [352 kB] Get: 51 http://deb.debian.org/debian unstable/main armhf golang-gopkg-check.v1-dev all 0.0+git20200902.038fdea-2 [31.2 kB] -Fetched 75.5 MB in 5s (14.9 MB/s) +Fetched 75.5 MB in 7s (11.1 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19508 files and directories currently installed.) @@ -387,7 +419,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/golang-github-biogo-hts-1.4.5+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../golang-github-biogo-hts_1.4.5+dfsg1-2_source.changes +I: user script /srv/workspace/pbuilder/6035/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/6035/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/golang-github-biogo-hts-1.4.5+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../golang-github-biogo-hts_1.4.5+dfsg1-2_source.changes dpkg-buildpackage: info: source package golang-github-biogo-hts dpkg-buildpackage: info: source version 1.4.5+dfsg1-2 dpkg-buildpackage: info: source distribution unstable @@ -405,18 +441,18 @@ dh_autoreconf -O--buildsystem=golang dh_auto_configure -O--buildsystem=golang dh_auto_build -O--buildsystem=golang - cd obj-arm-linux-gnueabihf && go install -trimpath -v -p 3 github.com/biogo/hts/bam github.com/biogo/hts/bgzf github.com/biogo/hts/bgzf/cache github.com/biogo/hts/bgzf/index github.com/biogo/hts/cram github.com/biogo/hts/cram/encoding/itf8 github.com/biogo/hts/cram/encoding/ltf8 github.com/biogo/hts/csi github.com/biogo/hts/fai github.com/biogo/hts/internal github.com/biogo/hts/sam github.com/biogo/hts/tabix + cd obj-arm-linux-gnueabihf && go install -trimpath -v -p 4 github.com/biogo/hts/bam github.com/biogo/hts/bgzf github.com/biogo/hts/bgzf/cache github.com/biogo/hts/bgzf/index github.com/biogo/hts/cram github.com/biogo/hts/cram/encoding/itf8 github.com/biogo/hts/cram/encoding/ltf8 github.com/biogo/hts/csi github.com/biogo/hts/fai github.com/biogo/hts/internal github.com/biogo/hts/sam github.com/biogo/hts/tabix internal/unsafeheader +internal/byteorder internal/goarch internal/cpu -internal/byteorder +internal/coverage/rtcov internal/abi internal/chacha8rand -internal/bytealg -internal/coverage/rtcov internal/godebugs internal/goexperiment internal/goos +internal/bytealg internal/profilerecord internal/runtime/atomic internal/asan @@ -425,62 +461,62 @@ internal/runtime/sys internal/runtime/syscall internal/stringslite -internal/runtime/exithook sync/atomic +internal/runtime/exithook math/bits unicode unicode/utf8 -internal/race -internal/runtime/maps -internal/sync cmp internal/itoa math github.com/biogo/hts/cram/encoding/itf8 github.com/biogo/hts/cram/encoding/ltf8 github.com/ulikunitz/xz/internal/hash +internal/race +internal/runtime/maps +internal/sync runtime -iter internal/reflectlite sync +iter slices maps errors sort internal/bisect +internal/testlog io strconv -bytes -strings internal/oserror path -reflect +bytes +strings internal/godebug -bufio -syscall -internal/testlog hash +syscall +bufio +reflect hash/crc32 container/heap compress/bzip2 +internal/syscall/execenv internal/syscall/unix time -internal/syscall/execenv -internal/fmtsort -encoding/binary io/fs internal/poll +internal/fmtsort +encoding/binary internal/filepathlite os fmt encoding/hex -net/url -compress/flate github.com/ulikunitz/xz/internal/xlog -github.com/ulikunitz/xz/lzma +compress/flate +net/url encoding/csv -compress/gzip +github.com/ulikunitz/xz/lzma github.com/biogo/hts/fai +compress/gzip github.com/biogo/hts/bgzf github.com/biogo/hts/bgzf/index github.com/biogo/hts/bgzf/cache @@ -491,23 +527,23 @@ github.com/biogo/hts/cram github.com/biogo/hts/bam dh_auto_test -O--buildsystem=golang - cd obj-arm-linux-gnueabihf && go test -vet=off -v -p 3 github.com/biogo/hts/bam github.com/biogo/hts/bgzf github.com/biogo/hts/bgzf/cache github.com/biogo/hts/bgzf/index github.com/biogo/hts/cram github.com/biogo/hts/cram/encoding/itf8 github.com/biogo/hts/cram/encoding/ltf8 github.com/biogo/hts/csi github.com/biogo/hts/fai github.com/biogo/hts/internal github.com/biogo/hts/sam github.com/biogo/hts/tabix + cd obj-arm-linux-gnueabihf && go test -vet=off -v -p 4 github.com/biogo/hts/bam github.com/biogo/hts/bgzf github.com/biogo/hts/bgzf/cache github.com/biogo/hts/bgzf/index github.com/biogo/hts/cram github.com/biogo/hts/cram/encoding/itf8 github.com/biogo/hts/cram/encoding/ltf8 github.com/biogo/hts/csi github.com/biogo/hts/fai github.com/biogo/hts/internal github.com/biogo/hts/sam github.com/biogo/hts/tabix === RUN Test OK: 15 passed ---- PASS: Test (0.29s) +--- PASS: Test (0.23s) === RUN TestFuzzCrashers bam_test.go:2485: run out of memory --- SKIP: TestFuzzCrashers (0.00s) === RUN TestMerger ---- PASS: TestMerger (0.39s) +--- PASS: TestMerger (0.28s) PASS -ok github.com/biogo/hts/bam 0.693s +ok github.com/biogo/hts/bam 0.528s === RUN TestEmpty --- PASS: TestEmpty (0.00s) === RUN TestEOF --- PASS: TestEOF (0.00s) === RUN TestRoundTrip ---- PASS: TestRoundTrip (0.00s) +--- PASS: TestRoundTrip (0.01s) === RUN TestRoundTripMulti --- PASS: TestRoundTripMulti (0.01s) === RUN TestHeaderIssue57 @@ -517,43 +553,43 @@ === RUN TestSeekErrorDeadlock --- PASS: TestSeekErrorDeadlock (0.00s) === RUN TestSeekFast ---- PASS: TestSeekFast (0.09s) +--- PASS: TestSeekFast (0.05s) === RUN TestCache ---- PASS: TestCache (0.59s) +--- PASS: TestCache (0.40s) === RUN TestBlocked ---- PASS: TestBlocked (0.01s) +--- PASS: TestBlocked (0.00s) === RUN TestFuzzCrashers --- PASS: TestFuzzCrashers (0.00s) === RUN TestZeroNonZero --- PASS: TestZeroNonZero (0.00s) === RUN TestWriteByteCount ---- PASS: TestWriteByteCount (0.00s) +--- PASS: TestWriteByteCount (0.01s) === RUN TestSeekCacheReadahead --- PASS: TestSeekCacheReadahead (0.10s) PASS -ok github.com/biogo/hts/bgzf 0.838s +ok github.com/biogo/hts/bgzf 0.603s ? github.com/biogo/hts/bgzf/cache [no test files] === RUN Test OK: 3 passed --- PASS: Test (0.04s) PASS -ok github.com/biogo/hts/bgzf/index 0.046s +ok github.com/biogo/hts/bgzf/index 0.054s ? github.com/biogo/hts/cram [no test files] === RUN TestRoundTrip --- PASS: TestRoundTrip (0.00s) === RUN TestKnownValues --- PASS: TestKnownValues (0.00s) PASS -ok github.com/biogo/hts/cram/encoding/itf8 0.010s +ok github.com/biogo/hts/cram/encoding/itf8 0.005s === RUN TestInt64RoundTrip --- PASS: TestInt64RoundTrip (0.00s) PASS -ok github.com/biogo/hts/cram/encoding/ltf8 0.008s +ok github.com/biogo/hts/cram/encoding/ltf8 0.006s === RUN Test OK: 3 passed ---- PASS: Test (0.00s) +--- PASS: Test (0.01s) PASS -ok github.com/biogo/hts/csi 0.012s +ok github.com/biogo/hts/csi 0.033s === RUN TestNewIndex --- PASS: TestNewIndex (0.00s) === RUN TestReadFrom @@ -563,7 +599,7 @@ === RUN TestFile --- PASS: TestFile (0.00s) PASS -ok github.com/biogo/hts/fai 0.009s +ok github.com/biogo/hts/fai 0.020s ? github.com/biogo/hts/internal [no test files] === RUN Test OK: 20 passed @@ -573,12 +609,12 @@ === RUN ExampleConsume --- PASS: ExampleConsume (0.00s) PASS -ok github.com/biogo/hts/sam 0.019s +ok github.com/biogo/hts/sam 0.013s === RUN Test OK: 1 passed --- PASS: Test (0.00s) PASS -ok github.com/biogo/hts/tabix 0.010s +ok github.com/biogo/hts/tabix 0.007s create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=golang dh_prep -O--buildsystem=golang @@ -606,12 +642,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/6035/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/6035/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/13316 and its subdirectories -I: Current time: Thu Mar 6 16:38:37 -12 2025 -I: pbuilder-time-stamp: 1741322317 +I: removing directory /srv/workspace/pbuilder/6035 and its subdirectories +I: Current time: Fri Mar 7 18:40:27 +14 2025 +I: pbuilder-time-stamp: 1741322427