Diff of the two buildlogs: -- --- b1/build.log 2024-08-28 19:15:22.206214111 +0000 +++ b2/build.log 2024-08-28 19:27:40.446893164 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Aug 28 07:07:27 -12 2024 -I: pbuilder-time-stamp: 1724872047 +I: Current time: Thu Aug 29 09:15:32 +14 2024 +I: pbuilder-time-stamp: 1724872532 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying modify_testing.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/8072/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/32295/tmp/hooks/D01_modify_environment starting +debug: Running on virt64b. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Aug 28 19:16 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/32295/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/32295/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='5899700ff2f34ac492347d21002a3841' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='8072' - PS1='# ' - PS2='> ' + INVOCATION_ID=d0b220c12a474979bf643dcfdb29dc2f + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=32295 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.prEMfvdH/pbuilderrc_JGKt --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.prEMfvdH/b1 --logfile b1/build.log icb-utils_2.0.1+git20161002.afee1d9-5.dsc' - SUDO_GID='112' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.prEMfvdH/pbuilderrc_iYD7 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.prEMfvdH/b2 --logfile b2/build.log icb-utils_2.0.1+git20161002.afee1d9-5.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt32b 6.1.0-23-armmp-lpae #1 SMP Debian 6.1.99-1 (2024-07-15) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-23-arm64 #1 SMP Debian 6.1.99-1 (2024-07-15) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/8072/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/32295/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -408,7 +440,7 @@ Get: 262 http://deb.debian.org/debian unstable/main armhf maven all 3.8.8-1 [19.3 kB] Get: 263 http://deb.debian.org/debian unstable/main armhf maven-repo-helper all 1.11 [142 kB] Get: 264 http://deb.debian.org/debian unstable/main armhf maven-debian-helper all 2.6.4 [108 kB] -Fetched 246 MB in 5s (46.9 MB/s) +Fetched 246 MB in 16s (15.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpipeline1:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19491 files and directories currently installed.) @@ -1277,8 +1309,8 @@ Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Aug 28 19:12:14 UTC 2024. -Universal Time is now: Wed Aug 28 19:12:14 UTC 2024. +Local time is now: Wed Aug 28 19:19:52 UTC 2024. +Universal Time is now: Wed Aug 28 19:19:52 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... @@ -1684,7 +1716,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../icb-utils_2.0.1+git20161002.afee1d9-5_source.changes +I: user script /srv/workspace/pbuilder/32295/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/32295/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../icb-utils_2.0.1+git20161002.afee1d9-5_source.changes dpkg-buildpackage: info: source package icb-utils dpkg-buildpackage: info: source version 2.0.1+git20161002.afee1d9-5 dpkg-buildpackage: info: source distribution unstable @@ -1777,14 +1813,14 @@ [INFO] No previous run data found, generating javadoc. [WARNING] Javadoc Warnings [WARNING] Loading source files for package edu.cornell.med.icb.ip... -[WARNING] Loading source files for package edu.cornell.med.icb.stat... -[WARNING] Loading source files for package edu.cornell.med.icb.io... -[WARNING] Loading source files for package edu.cornell.med.icb.maps... -[WARNING] Loading source files for package edu.cornell.med.icb.identifier... +[WARNING] Loading source files for package edu.cornell.med.icb.util... [WARNING] Loading source files for package edu.cornell.med.icb.net... -[WARNING] Loading source files for package edu.cornell.med.icb.cli... [WARNING] Loading source files for package edu.cornell.med.icb.iterators... -[WARNING] Loading source files for package edu.cornell.med.icb.util... +[WARNING] Loading source files for package edu.cornell.med.icb.identifier... +[WARNING] Loading source files for package edu.cornell.med.icb.maps... +[WARNING] Loading source files for package edu.cornell.med.icb.io... +[WARNING] Loading source files for package edu.cornell.med.icb.cli... +[WARNING] Loading source files for package edu.cornell.med.icb.stat... [WARNING] Loading source files for package org.apache.unicode... [WARNING] Constructing Javadoc information... [WARNING] Building index for all the packages and classes... @@ -1861,49 +1897,49 @@ [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/org/apache/unicode/package-summary.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/org/apache/unicode/package-tree.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/serialized-form.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/ip/class-use/IpAddress.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/ip/class-use/IpUtils.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/MatthewsCorrelationCalculator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/AreaUnderTheRocCurveCalculator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/ZScoreCalculator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/PredictionStatisticCalculator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/AccuracyCalculator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/RootMeanSquaredErrorCalculator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/LinearRegression.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/SpecificityCalculator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/SensitivityCalculator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/MinMaxCalculator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/ip/class-use/IpAddress.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/RandomAdapter.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/VersionUtils.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/BoundedPriorityQueue.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/ICBFilenameUtils.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/ProcessEstimator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/ICBStringUtils.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/SimpleChecksum.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/ICBStringNormalizer.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/net/class-use/CommandExecutor.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/net/class-use/SyncPipe.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/TextFileLineIterator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/RecursiveFileListIterator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/IteratorIterable.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/FlatteningIterator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/TsvLineIterator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/PreSortedMergeTextFilesLineIterator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/identifier/class-use/DoubleIndexedIdentifier.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/identifier/class-use/IndexedIdentifier.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/identifier/class-use/PropertyMappable.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/maps/class-use/LinkedHashToMultiTypeMap.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ConditionsParser.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/TSVReader.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ConditionField.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ConditionField.FieldType.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/DataObjectOutputStream.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ResourceFinder.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ResourceFinder.SearchInClasspath.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ConditionsParsingException.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/TsvToFromMap.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/DataObjectOutputStream.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/DataObjectInputStream.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/maps/class-use/LinkedHashToMultiTypeMap.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/identifier/class-use/DoubleIndexedIdentifier.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/identifier/class-use/IndexedIdentifier.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/identifier/class-use/PropertyMappable.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/net/class-use/SyncPipe.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/net/class-use/CommandExecutor.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/TSVReader.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ConditionField.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ConditionField.FieldType.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/cli/class-use/UseModality.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/TsvLineIterator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/PreSortedMergeTextFilesLineIterator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/RecursiveFileListIterator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/TextFileLineIterator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/IteratorIterable.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/FlatteningIterator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/ICBStringNormalizer.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/BoundedPriorityQueue.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/SimpleChecksum.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/ICBFilenameUtils.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/ICBStringUtils.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/RandomAdapter.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/VersionUtils.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/ProcessEstimator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/SpecificityCalculator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/SensitivityCalculator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/LinearRegression.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/AreaUnderTheRocCurveCalculator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/RootMeanSquaredErrorCalculator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/PredictionStatisticCalculator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/MinMaxCalculator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/ZScoreCalculator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/AccuracyCalculator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/MatthewsCorrelationCalculator.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/org/apache/unicode/class-use/UnicodeCharUtil.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/cli/package-use.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/identifier/package-use.html... @@ -1929,8 +1965,8 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 54.742 s -[INFO] Finished at: 2024-08-28T07:14:12-12:00 +[INFO] Total time: 02:08 min +[INFO] Finished at: 2024-08-29T09:25:54+14:00 [INFO] ------------------------------------------------------------------------ jh_build -O--buildsystem=maven dh_auto_test -O--buildsystem=maven @@ -1973,346 +2009,369 @@ [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running edu.cornell.med.icb.ip.TestIpUtils -[WARNING] Tests run: 13, Failures: 0, Errors: 0, Skipped: 5, Time elapsed: 0.409 s - in edu.cornell.med.icb.ip.TestIpUtils +[WARNING] Tests run: 13, Failures: 0, Errors: 0, Skipped: 5, Time elapsed: 0.807 s - in edu.cornell.med.icb.ip.TestIpUtils [INFO] Running edu.cornell.med.icb.ip.TestIpAddress -[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in edu.cornell.med.icb.ip.TestIpAddress -[INFO] Running edu.cornell.med.icb.io.TestConditionsParser -07:14:29.749 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Setting default value: false -07:14:29.781 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Converting 'Boolean' value 'false' to type 'Boolean' -07:14:29.781 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - No conversion required, value is already a Boolean -07:14:29.804 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Setting default value: 0 -07:14:29.804 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converting 'Integer' value '0' to type 'Byte' -07:14:29.805 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converted to Byte value '0' -07:14:29.807 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Setting default value: -07:14:29.807 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Converting 'Character' value ' ' to type 'Character' -07:14:29.807 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - No conversion required, value is already a Character -07:14:29.809 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Setting default value: 0 -07:14:29.809 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'Integer' value '0' to type 'Double' -07:14:29.809 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '0.0' -07:14:29.811 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Setting default value: 0 -07:14:29.822 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converting 'Integer' value '0' to type 'Float' -07:14:29.822 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converted to Float value '0.0' -07:14:29.824 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Setting default value: 0 -07:14:29.825 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'Integer' value '0' to type 'Integer' -07:14:29.825 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No conversion required, value is already a Integer -07:14:29.826 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Setting default value: 0 -07:14:29.827 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converting 'Integer' value '0' to type 'Long' -07:14:29.837 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converted to Long value '0' -07:14:29.844 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Setting default value: 0 -07:14:29.845 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converting 'Integer' value '0' to type 'Short' -07:14:29.845 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converted to Short value '0' -07:14:29.851 [main] DEBUG org.apache.commons.beanutils.converters.BigDecimalConverter - Setting default value: 0.0 -07:14:29.860 [main] DEBUG org.apache.commons.beanutils.converters.BigDecimalConverter - Converting 'BigDecimal' value '0.0' to type 'BigDecimal' -07:14:29.860 [main] DEBUG org.apache.commons.beanutils.converters.BigDecimalConverter - No conversion required, value is already a BigDecimal -07:14:29.869 [main] DEBUG org.apache.commons.beanutils.converters.BigIntegerConverter - Setting default value: 0 -07:14:29.870 [main] DEBUG org.apache.commons.beanutils.converters.BigIntegerConverter - Converting 'BigInteger' value '0' to type 'BigInteger' -07:14:29.870 [main] DEBUG org.apache.commons.beanutils.converters.BigIntegerConverter - No conversion required, value is already a BigInteger -07:14:29.870 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Setting default value: false -07:14:29.871 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Converting 'Boolean' value 'false' to type 'Boolean' -07:14:29.871 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - No conversion required, value is already a Boolean -07:14:29.872 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Setting default value: 0 -07:14:29.872 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converting 'Integer' value '0' to type 'Byte' -07:14:29.872 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converted to Byte value '0' -07:14:29.872 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Setting default value: -07:14:29.872 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Converting 'Character' value ' ' to type 'Character' -07:14:29.872 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - No conversion required, value is already a Character -07:14:29.873 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Setting default value: 0 -07:14:29.873 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'Integer' value '0' to type 'Double' -07:14:29.873 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '0.0' -07:14:29.873 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Setting default value: 0 -07:14:29.874 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converting 'Integer' value '0' to type 'Float' -07:14:29.874 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converted to Float value '0.0' -07:14:29.874 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Setting default value: 0 -07:14:29.874 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'Integer' value '0' to type 'Integer' -07:14:29.874 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No conversion required, value is already a Integer -07:14:29.875 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Setting default value: 0 -07:14:29.875 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converting 'Integer' value '0' to type 'Long' -07:14:29.887 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converted to Long value '0' -07:14:29.887 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Setting default value: 0 -07:14:29.887 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converting 'Integer' value '0' to type 'Short' -07:14:29.887 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converted to Short value '0' -07:14:29.890 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Setting default value: -07:14:29.890 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value '' to type 'String' -07:14:29.933 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Z@1f2a664 -07:14:29.934 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'boolean[]' value '[Z@1f2a664' to type 'boolean[]' -07:14:29.934 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a boolean[] -07:14:29.934 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [B@c1c010 -07:14:29.934 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'byte[]' value '[B@c1c010' to type 'byte[]' -07:14:29.934 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a byte[] -07:14:29.934 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [C@17f23d9 -07:14:29.935 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'char[]' value '[C@17f23d9' to type 'char[]' -07:14:29.938 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a char[] -07:14:29.939 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [D@1d47554 -07:14:29.940 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'double[]' value '[D@1d47554' to type 'double[]' -07:14:29.940 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a double[] -07:14:29.940 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [F@1200884 -07:14:29.940 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'float[]' value '[F@1200884' to type 'float[]' -07:14:29.941 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a float[] -07:14:29.941 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [I@10f2775 -07:14:29.941 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'int[]' value '[I@10f2775' to type 'int[]' -07:14:29.941 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a int[] -07:14:29.942 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [J@4aa2f2 -07:14:29.942 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'long[]' value '[J@4aa2f2' to type 'long[]' -07:14:29.942 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a long[] -07:14:29.942 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [S@5965f2 -07:14:29.942 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'short[]' value '[S@5965f2' to type 'short[]' -07:14:29.943 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a short[] -07:14:29.951 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.math.BigDecimal;@149af10 -07:14:29.952 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'BigDecimal[]' value '[Ljava.math.BigDecimal;@149af10' to type 'BigDecimal[]' -07:14:29.952 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a BigDecimal[] -07:14:29.952 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.math.BigInteger;@134517 -07:14:29.953 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'BigInteger[]' value '[Ljava.math.BigInteger;@134517' to type 'BigInteger[]' -07:14:29.953 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a BigInteger[] -07:14:29.953 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Boolean;@61c7e3 -07:14:29.953 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Boolean[]' value '[Ljava.lang.Boolean;@61c7e3' to type 'Boolean[]' -07:14:29.953 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Boolean[] -07:14:29.954 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Byte;@1e4c80f -07:14:29.954 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Byte[]' value '[Ljava.lang.Byte;@1e4c80f' to type 'Byte[]' -07:14:29.954 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Byte[] -07:14:29.954 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Character;@1e8ea47 -07:14:29.955 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Character[]' value '[Ljava.lang.Character;@1e8ea47' to type 'Character[]' -07:14:29.955 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Character[] -07:14:29.955 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Double;@11f8236 -07:14:29.955 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Double[]' value '[Ljava.lang.Double;@11f8236' to type 'Double[]' -07:14:29.956 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Double[] -07:14:29.956 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Float;@1d92fe2 -07:14:29.956 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Float[]' value '[Ljava.lang.Float;@1d92fe2' to type 'Float[]' -07:14:29.956 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Float[] -07:14:29.956 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Integer;@d2d351 -07:14:29.957 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Integer[]' value '[Ljava.lang.Integer;@d2d351' to type 'Integer[]' -07:14:29.957 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Integer[] -07:14:29.957 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Long;@19a3314 -07:14:29.957 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Long[]' value '[Ljava.lang.Long;@19a3314' to type 'Long[]' -07:14:29.957 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Long[] -07:14:29.958 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Short;@11666ad -07:14:29.958 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Short[]' value '[Ljava.lang.Short;@11666ad' to type 'Short[]' -07:14:29.958 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Short[] -07:14:29.959 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.String;@171d0d8 -07:14:29.959 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'String[]' value '[Ljava.lang.String;@171d0d8' to type 'String[]' -07:14:29.967 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a String[] -07:14:29.968 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Class;@14a2ec7 -07:14:29.968 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Class[]' value '[Ljava.lang.Class;@14a2ec7' to type 'Class[]' -07:14:29.968 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Class[] -07:14:29.969 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.util.Date;@1b7e5df -07:14:29.969 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Date[]' value '[Ljava.util.Date;@1b7e5df' to type 'Date[]' -07:14:29.969 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Date[] -07:14:29.970 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.util.Calendar;@e136d3 -07:14:29.970 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Calendar[]' value '[Ljava.util.Calendar;@e136d3' to type 'Calendar[]' -07:14:29.970 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Calendar[] -07:14:29.971 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.io.File;@79cee3 -07:14:29.971 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.io.File[]' value '[Ljava.io.File;@79cee3' to type 'java.io.File[]' -07:14:29.971 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.io.File[] -07:14:29.972 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.sql.Date;@1ba4338 -07:14:29.972 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.sql.Date[]' value '[Ljava.sql.Date;@1ba4338' to type 'java.sql.Date[]' -07:14:29.972 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.sql.Date[] -07:14:29.984 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.sql.Time;@1b58ca3 -07:14:29.984 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.sql.Time[]' value '[Ljava.sql.Time;@1b58ca3' to type 'java.sql.Time[]' -07:14:29.984 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.sql.Time[] -07:14:29.985 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.sql.Timestamp;@10c2e6b -07:14:29.985 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.sql.Timestamp[]' value '[Ljava.sql.Timestamp;@10c2e6b' to type 'java.sql.Timestamp[]' -07:14:29.985 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.sql.Timestamp[] -07:14:29.986 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.net.URL;@1826d77 -07:14:29.986 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.net.URL[]' value '[Ljava.net.URL;@1826d77' to type 'java.net.URL[]' -07:14:29.986 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.net.URL[] -07:14:30.099 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '456' to class 'double' -07:14:30.100 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '456' to type 'Double' -07:14:30.100 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:14:30.101 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '456.0' -07:14:30.132 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'def' to class 'java.lang.String' -07:14:30.133 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'def' to type 'String' -07:14:30.140 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '123' to class 'int' -07:14:30.141 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '123' to type 'Integer' -07:14:30.141 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:14:30.141 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '123' -07:14:30.161 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '456' to class 'double' -07:14:30.162 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '456' to type 'Double' -07:14:30.162 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:14:30.162 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '456.0' -07:14:30.163 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'def' to class 'java.lang.String' -07:14:30.163 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'def' to type 'String' -07:14:30.163 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '123' to class 'int' -07:14:30.164 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '123' to type 'Integer' -07:14:30.164 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:14:30.164 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '123' -07:14:30.165 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '8.367' to class 'double' -07:14:30.165 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '8.367' to type 'Double' -07:14:30.165 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:14:30.166 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '8.367' -07:14:30.166 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '3bf' to class 'java.lang.String' -07:14:30.166 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value '3bf' to type 'String' -07:14:30.174 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '567' to class 'int' -07:14:30.174 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '567' to type 'Integer' -07:14:30.174 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:14:30.175 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '567' -07:14:30.184 [main] DEBUG org.apache.commons.beanutils.BeanUtils - Cloning bean: edu.cornell.med.icb.io.SampleBean -07:14:30.221 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' -07:14:30.222 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' -07:14:30.222 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:14:30.222 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' -07:14:30.225 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' -07:14:30.226 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' -07:14:30.226 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:14:30.226 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' -07:14:30.226 [main] DEBUG org.apache.commons.beanutils.BeanUtils - Cloning bean: edu.cornell.med.icb.io.SampleBean -07:14:30.228 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' -07:14:30.228 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' -07:14:30.229 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:14:30.229 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' -07:14:30.230 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '80' to class 'int' -07:14:30.230 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '80' to type 'Integer' -07:14:30.230 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:14:30.230 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '80' -07:14:30.231 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' -07:14:30.231 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' -07:14:30.231 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:14:30.231 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' -07:14:30.237 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[3] to class 'int[]' -07:14:30.238 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' -07:14:30.238 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:14:30.238 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' -07:14:30.238 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' -07:14:30.238 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:14:30.239 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' -07:14:30.239 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '30' to type 'Integer' -07:14:30.239 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:14:30.239 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '30' -07:14:30.240 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[3] to class 'double[]' -07:14:30.240 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '3.5' to type 'Double' -07:14:30.240 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:14:30.241 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '3.5' -07:14:30.241 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value ' 2.5' to type 'Double' -07:14:30.241 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:14:30.241 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '2.5' -07:14:30.241 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value ' 1.5' to type 'Double' -07:14:30.241 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:14:30.242 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '1.5' -07:14:30.242 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[3] to class 'java.lang.String[]' -07:14:30.242 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'field3' to type 'String' -07:14:30.243 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value ' field3b' to type 'String' -07:14:30.243 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value ' field 3c' to type 'String' -07:14:30.244 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[1] to class 'int[]' -07:14:30.244 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' -07:14:30.244 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:14:30.244 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' -07:14:30.245 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[1] to class 'double[]' -07:14:30.245 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '2.2' to type 'Double' -07:14:30.245 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:14:30.245 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '2.2' -07:14:30.246 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[1] to class 'java.lang.String[]' -07:14:30.246 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'threedefault' to type 'String' -07:14:30.261 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' -07:14:30.261 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' -07:14:30.261 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:14:30.262 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' -07:14:30.262 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' -07:14:30.263 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' -07:14:30.263 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:14:30.263 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' -07:14:30.264 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' -07:14:30.264 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' -07:14:30.264 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:14:30.264 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' -07:14:30.265 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '80' to class 'int' -07:14:30.265 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '80' to type 'Integer' -07:14:30.265 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:14:30.266 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '80' -07:14:30.266 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' -07:14:30.266 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' -07:14:30.267 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:14:30.267 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' -07:14:30.270 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' -07:14:30.270 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' -07:14:30.270 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:14:30.271 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' -07:14:30.271 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '3.5' to class 'double' -07:14:30.272 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '3.5' to type 'Double' -07:14:30.272 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:14:30.272 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '3.5' -07:14:30.272 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'field3' to class 'java.lang.String' -07:14:30.273 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'field3' to type 'String' -07:14:30.273 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' -07:14:30.273 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' -07:14:30.274 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:14:30.274 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' -07:14:30.274 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '2.2' to class 'double' -07:14:30.275 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '2.2' to type 'Double' -07:14:30.275 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:14:30.276 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '2.2' -07:14:30.277 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'threedefault' to class 'java.lang.String' -07:14:30.277 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'threedefault' to type 'String' -07:14:30.285 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' -07:14:30.286 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' -07:14:30.286 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:14:30.286 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' -07:14:30.287 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' -07:14:30.287 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' -07:14:30.287 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:14:30.287 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' -07:14:30.288 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '10' to class 'int' -07:14:30.289 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '10' to type 'Integer' -07:14:30.289 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:14:30.289 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '10' -07:14:30.290 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' -07:14:30.291 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' -07:14:30.291 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:14:30.291 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' -07:14:30.292 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' -07:14:30.292 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' -07:14:30.293 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:14:30.293 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' -07:14:30.293 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '20' to class 'int' -07:14:30.294 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '20' to type 'Integer' -07:14:30.294 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:14:30.294 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '20' -07:14:30.300 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' -07:14:30.301 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' -07:14:30.301 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:14:30.301 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' -07:14:30.302 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' -07:14:30.303 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' -07:14:30.303 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:14:30.307 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' -07:14:30.308 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' -07:14:30.309 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' -07:14:30.309 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:14:30.309 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' -07:14:30.310 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '80' to class 'int' -07:14:30.310 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '80' to type 'Integer' -07:14:30.311 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:14:30.315 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '80' -07:14:30.316 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' -07:14:30.316 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' -07:14:30.316 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:14:30.317 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' -[INFO] Tests run: 17, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.323 s - in edu.cornell.med.icb.io.TestConditionsParser -[INFO] Running edu.cornell.med.icb.io.TestTSVReader -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in edu.cornell.med.icb.io.TestTSVReader -[INFO] Running edu.cornell.med.icb.io.TestResourceFinder -07:14:30.373 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@10dea4e -07:14:30.379 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@10dea4e -07:14:30.380 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using system class loader -07:14:30.382 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@10dea4e -07:14:30.388 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@10dea4e -07:14:30.389 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] using system class loader -07:14:30.390 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] as file in filesystem -07:14:30.391 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - ... fo`und url is [file:/tmp/temp-file.txt] -07:14:30.398 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@10dea4e -07:14:30.399 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@10dea4e -07:14:30.404 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using system class loader -07:14:30.404 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@10dea4e -07:14:30.406 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@10dea4e -07:14:30.407 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] using system class loader -07:14:30.412 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] as file in filesystem -07:14:30.419 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport.ipr] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@10dea4e -07:14:30.422 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport.ipr] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@10dea4e -07:14:30.423 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport.ipr] using system class loader -07:14:30.432 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@10dea4e -07:14:30.434 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@10dea4e -07:14:30.435 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] using system class loader -07:14:30.440 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] as file in filesystem -[WARNING] Tests run: 5, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 0.022 s - in edu.cornell.med.icb.io.TestResourceFinder +[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 s - in edu.cornell.med.icb.ip.TestIpAddress +[INFO] Running edu.cornell.med.icb.util.TestICBStringNormalizer +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in edu.cornell.med.icb.util.TestICBStringNormalizer +[INFO] Running edu.cornell.med.icb.util.TestICBFilenameUtils +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in edu.cornell.med.icb.util.TestICBFilenameUtils +[INFO] Running edu.cornell.med.icb.util.TestRandomAdapter +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.123 s - in edu.cornell.med.icb.util.TestRandomAdapter +[INFO] Running edu.cornell.med.icb.util.TestVersionUtils +09:26:24.492 [main] DEBUG edu.cornell.med.icb.util.VersionUtils - Implementation-Version: UNKNOWN +09:26:24.548 [main] DEBUG edu.cornell.med.icb.util.VersionUtils - Implementation-Version: UNKNOWN +09:26:24.568 [main] DEBUG edu.cornell.med.icb.util.VersionUtils - Implementation-Version: 2.6 +[WARNING] Tests run: 4, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 1.289 s - in edu.cornell.med.icb.util.TestVersionUtils +[INFO] Running edu.cornell.med.icb.util.TestICBStringUtils +[INFO] Tests run: 25, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.236 s - in edu.cornell.med.icb.util.TestICBStringUtils +[INFO] Running edu.cornell.med.icb.util.TestBoundedPriorityQueue +[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.064 s - in edu.cornell.med.icb.util.TestBoundedPriorityQueue +[INFO] Running edu.cornell.med.icb.util.TestSimpleChecksum +[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 s - in edu.cornell.med.icb.util.TestSimpleChecksum +[INFO] Running edu.cornell.med.icb.iterators.TestTsvLineIterator +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.147 s - in edu.cornell.med.icb.iterators.TestTsvLineIterator +[INFO] Running edu.cornell.med.icb.iterators.TestTextFileLineIterator +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in edu.cornell.med.icb.iterators.TestTextFileLineIterator +[INFO] Running edu.cornell.med.icb.iterators.TestPreSortedMergeTextFilesLineIterator +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.296 s - in edu.cornell.med.icb.iterators.TestPreSortedMergeTextFilesLineIterator [INFO] Running edu.cornell.med.icb.identifier.TestIndexedIdentifier -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.06 s - in edu.cornell.med.icb.identifier.TestIndexedIdentifier +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.115 s - in edu.cornell.med.icb.identifier.TestIndexedIdentifier +[INFO] Running edu.cornell.med.icb.io.TestResourceFinder +09:26:25.962 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@10dea4e +09:26:25.965 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@10dea4e +09:26:25.966 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using system class loader +09:26:25.984 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@10dea4e +09:26:25.994 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@10dea4e +09:26:25.995 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] using system class loader +09:26:25.996 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] as file in filesystem +09:26:25.997 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - ... fo`und url is [file:/tmp/temp-file.txt] +09:26:25.999 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@10dea4e +09:26:26.005 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@10dea4e +09:26:26.007 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using system class loader +09:26:26.007 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@10dea4e +09:26:26.012 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@10dea4e +09:26:26.013 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] using system class loader +09:26:26.017 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] as file in filesystem +09:26:26.021 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport.ipr] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@10dea4e +09:26:26.036 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport.ipr] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@10dea4e +09:26:26.037 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport.ipr] using system class loader +09:26:26.038 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@10dea4e +09:26:26.046 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@10dea4e +09:26:26.047 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] using system class loader +09:26:26.050 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] as file in filesystem +[WARNING] Tests run: 5, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 0.12 s - in edu.cornell.med.icb.io.TestResourceFinder +[INFO] Running edu.cornell.med.icb.io.TestTSVReader +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.01 s - in edu.cornell.med.icb.io.TestTSVReader +[INFO] Running edu.cornell.med.icb.io.TestConditionsParser +09:26:26.189 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Setting default value: false +09:26:26.190 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Converting 'Boolean' value 'false' to type 'Boolean' +09:26:26.191 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - No conversion required, value is already a Boolean +09:26:26.198 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Setting default value: 0 +09:26:26.199 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converting 'Integer' value '0' to type 'Byte' +09:26:26.199 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converted to Byte value '0' +09:26:26.202 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Setting default value: +09:26:26.203 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Converting 'Character' value ' ' to type 'Character' +09:26:26.203 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - No conversion required, value is already a Character +09:26:26.205 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Setting default value: 0 +09:26:26.205 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'Integer' value '0' to type 'Double' +09:26:26.206 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '0.0' +09:26:26.208 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Setting default value: 0 +09:26:26.212 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converting 'Integer' value '0' to type 'Float' +09:26:26.213 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converted to Float value '0.0' +09:26:26.215 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Setting default value: 0 +09:26:26.215 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'Integer' value '0' to type 'Integer' +09:26:26.215 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No conversion required, value is already a Integer +09:26:26.225 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Setting default value: 0 +09:26:26.225 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converting 'Integer' value '0' to type 'Long' +09:26:26.226 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converted to Long value '0' +09:26:26.228 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Setting default value: 0 +09:26:26.236 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converting 'Integer' value '0' to type 'Short' +09:26:26.237 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converted to Short value '0' +09:26:26.262 [main] DEBUG org.apache.commons.beanutils.converters.BigDecimalConverter - Setting default value: 0.0 +09:26:26.263 [main] DEBUG org.apache.commons.beanutils.converters.BigDecimalConverter - Converting 'BigDecimal' value '0.0' to type 'BigDecimal' +09:26:26.263 [main] DEBUG org.apache.commons.beanutils.converters.BigDecimalConverter - No conversion required, value is already a BigDecimal +09:26:26.265 [main] DEBUG org.apache.commons.beanutils.converters.BigIntegerConverter - Setting default value: 0 +09:26:26.266 [main] DEBUG org.apache.commons.beanutils.converters.BigIntegerConverter - Converting 'BigInteger' value '0' to type 'BigInteger' +09:26:26.266 [main] DEBUG org.apache.commons.beanutils.converters.BigIntegerConverter - No conversion required, value is already a BigInteger +09:26:26.266 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Setting default value: false +09:26:26.267 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Converting 'Boolean' value 'false' to type 'Boolean' +09:26:26.267 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - No conversion required, value is already a Boolean +09:26:26.267 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Setting default value: 0 +09:26:26.267 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converting 'Integer' value '0' to type 'Byte' +09:26:26.280 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converted to Byte value '0' +09:26:26.280 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Setting default value: +09:26:26.281 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Converting 'Character' value ' ' to type 'Character' +09:26:26.281 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - No conversion required, value is already a Character +09:26:26.281 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Setting default value: 0 +09:26:26.282 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'Integer' value '0' to type 'Double' +09:26:26.282 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '0.0' +09:26:26.282 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Setting default value: 0 +09:26:26.282 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converting 'Integer' value '0' to type 'Float' +09:26:26.283 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converted to Float value '0.0' +09:26:26.283 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Setting default value: 0 +09:26:26.283 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'Integer' value '0' to type 'Integer' +09:26:26.284 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No conversion required, value is already a Integer +09:26:26.295 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Setting default value: 0 +09:26:26.295 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converting 'Integer' value '0' to type 'Long' +09:26:26.295 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converted to Long value '0' +09:26:26.296 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Setting default value: 0 +09:26:26.296 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converting 'Integer' value '0' to type 'Short' +09:26:26.296 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converted to Short value '0' +09:26:26.298 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Setting default value: +09:26:26.299 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value '' to type 'String' +09:26:26.348 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Z@1176cc1 +09:26:26.349 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'boolean[]' value '[Z@1176cc1' to type 'boolean[]' +09:26:26.349 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a boolean[] +09:26:26.350 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [B@78a03f +09:26:26.350 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'byte[]' value '[B@78a03f' to type 'byte[]' +09:26:26.350 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a byte[] +09:26:26.351 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [C@7ed70f +09:26:26.351 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'char[]' value '[C@7ed70f' to type 'char[]' +09:26:26.351 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a char[] +09:26:26.351 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [D@1dd025 +09:26:26.351 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'double[]' value '[D@1dd025' to type 'double[]' +09:26:26.361 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a double[] +09:26:26.361 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [F@1b204a1 +09:26:26.362 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'float[]' value '[F@1b204a1' to type 'float[]' +09:26:26.362 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a float[] +09:26:26.363 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [I@1e20588 +09:26:26.363 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'int[]' value '[I@1e20588' to type 'int[]' +09:26:26.363 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a int[] +09:26:26.363 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [J@e139a4 +09:26:26.364 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'long[]' value '[J@e139a4' to type 'long[]' +09:26:26.372 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a long[] +09:26:26.372 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [S@1dc8ecb +09:26:26.373 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'short[]' value '[S@1dc8ecb' to type 'short[]' +09:26:26.373 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a short[] +09:26:26.373 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.math.BigDecimal;@1542153 +09:26:26.373 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'BigDecimal[]' value '[Ljava.math.BigDecimal;@1542153' to type 'BigDecimal[]' +09:26:26.373 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a BigDecimal[] +09:26:26.374 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.math.BigInteger;@4ccb53 +09:26:26.374 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'BigInteger[]' value '[Ljava.math.BigInteger;@4ccb53' to type 'BigInteger[]' +09:26:26.374 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a BigInteger[] +09:26:26.375 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Boolean;@a6d5a6 +09:26:26.375 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Boolean[]' value '[Ljava.lang.Boolean;@a6d5a6' to type 'Boolean[]' +09:26:26.375 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Boolean[] +09:26:26.375 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Byte;@445629 +09:26:26.376 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Byte[]' value '[Ljava.lang.Byte;@445629' to type 'Byte[]' +09:26:26.385 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Byte[] +09:26:26.385 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Character;@1d250c6 +09:26:26.385 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Character[]' value '[Ljava.lang.Character;@1d250c6' to type 'Character[]' +09:26:26.385 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Character[] +09:26:26.386 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Double;@126e945 +09:26:26.386 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Double[]' value '[Ljava.lang.Double;@126e945' to type 'Double[]' +09:26:26.386 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Double[] +09:26:26.387 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Float;@c562f7 +09:26:26.387 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Float[]' value '[Ljava.lang.Float;@c562f7' to type 'Float[]' +09:26:26.387 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Float[] +09:26:26.387 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Integer;@1bb137d +09:26:26.388 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Integer[]' value '[Ljava.lang.Integer;@1bb137d' to type 'Integer[]' +09:26:26.403 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Integer[] +09:26:26.404 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Long;@1301423 +09:26:26.404 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Long[]' value '[Ljava.lang.Long;@1301423' to type 'Long[]' +09:26:26.404 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Long[] +09:26:26.405 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Short;@4f701 +09:26:26.405 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Short[]' value '[Ljava.lang.Short;@4f701' to type 'Short[]' +09:26:26.405 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Short[] +09:26:26.405 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.String;@14342c2 +09:26:26.406 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'String[]' value '[Ljava.lang.String;@14342c2' to type 'String[]' +09:26:26.406 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a String[] +09:26:26.406 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Class;@3e4e87 +09:26:26.406 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Class[]' value '[Ljava.lang.Class;@3e4e87' to type 'Class[]' +09:26:26.407 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Class[] +09:26:26.407 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.util.Date;@19c5f1a +09:26:26.407 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Date[]' value '[Ljava.util.Date;@19c5f1a' to type 'Date[]' +09:26:26.407 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Date[] +09:26:26.417 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.util.Calendar;@9e7ee8 +09:26:26.418 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Calendar[]' value '[Ljava.util.Calendar;@9e7ee8' to type 'Calendar[]' +09:26:26.418 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Calendar[] +09:26:26.418 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.io.File;@1b1176b +09:26:26.418 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.io.File[]' value '[Ljava.io.File;@1b1176b' to type 'java.io.File[]' +09:26:26.419 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.io.File[] +09:26:26.419 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.sql.Date;@7fd8ce +09:26:26.419 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.sql.Date[]' value '[Ljava.sql.Date;@7fd8ce' to type 'java.sql.Date[]' +09:26:26.419 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.sql.Date[] +09:26:26.431 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.sql.Time;@aab498 +09:26:26.432 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.sql.Time[]' value '[Ljava.sql.Time;@aab498' to type 'java.sql.Time[]' +09:26:26.432 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.sql.Time[] +09:26:26.433 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.sql.Timestamp;@1fe63b9 +09:26:26.433 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.sql.Timestamp[]' value '[Ljava.sql.Timestamp;@1fe63b9' to type 'java.sql.Timestamp[]' +09:26:26.433 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.sql.Timestamp[] +09:26:26.433 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.net.URL;@469c48 +09:26:26.434 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.net.URL[]' value '[Ljava.net.URL;@469c48' to type 'java.net.URL[]' +09:26:26.434 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.net.URL[] +09:26:26.703 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '456' to class 'double' +09:26:26.703 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '456' to type 'Double' +09:26:26.709 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +09:26:26.710 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '456.0' +09:26:26.791 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'def' to class 'java.lang.String' +09:26:26.800 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'def' to type 'String' +09:26:26.824 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '123' to class 'int' +09:26:26.824 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '123' to type 'Integer' +09:26:26.825 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +09:26:26.825 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '123' +09:26:26.858 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '456' to class 'double' +09:26:26.858 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '456' to type 'Double' +09:26:26.858 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +09:26:26.859 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '456.0' +09:26:26.859 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'def' to class 'java.lang.String' +09:26:26.859 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'def' to type 'String' +09:26:26.864 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '123' to class 'int' +09:26:26.864 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '123' to type 'Integer' +09:26:26.865 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +09:26:26.865 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '123' +09:26:26.866 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '8.367' to class 'double' +09:26:26.866 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '8.367' to type 'Double' +09:26:26.866 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +09:26:26.867 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '8.367' +09:26:26.867 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '3bf' to class 'java.lang.String' +09:26:26.867 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value '3bf' to type 'String' +09:26:26.893 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '567' to class 'int' +09:26:26.894 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '567' to type 'Integer' +09:26:26.894 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +09:26:26.894 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '567' +09:26:26.904 [main] DEBUG org.apache.commons.beanutils.BeanUtils - Cloning bean: edu.cornell.med.icb.io.SampleBean +09:26:26.986 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' +09:26:26.986 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' +09:26:26.986 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +09:26:26.986 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' +09:26:26.987 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' +09:26:26.988 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' +09:26:26.988 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +09:26:26.988 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' +09:26:26.989 [main] DEBUG org.apache.commons.beanutils.BeanUtils - Cloning bean: edu.cornell.med.icb.io.SampleBean +09:26:26.990 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' +09:26:26.991 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' +09:26:26.991 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +09:26:26.991 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' +09:26:27.012 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '80' to class 'int' +09:26:27.013 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '80' to type 'Integer' +09:26:27.013 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +09:26:27.013 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '80' +09:26:27.014 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' +09:26:27.014 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' +09:26:27.014 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +09:26:27.014 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' +09:26:27.034 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[3] to class 'int[]' +09:26:27.034 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' +09:26:27.034 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +09:26:27.035 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' +09:26:27.035 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' +09:26:27.035 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +09:26:27.035 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' +09:26:27.047 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '30' to type 'Integer' +09:26:27.047 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +09:26:27.047 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '30' +09:26:27.048 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[3] to class 'double[]' +09:26:27.048 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '3.5' to type 'Double' +09:26:27.049 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +09:26:27.049 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '3.5' +09:26:27.049 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value ' 2.5' to type 'Double' +09:26:27.049 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +09:26:27.049 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '2.5' +09:26:27.050 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value ' 1.5' to type 'Double' +09:26:27.050 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +09:26:27.050 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '1.5' +09:26:27.051 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[3] to class 'java.lang.String[]' +09:26:27.051 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'field3' to type 'String' +09:26:27.051 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value ' field3b' to type 'String' +09:26:27.051 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value ' field 3c' to type 'String' +09:26:27.066 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[1] to class 'int[]' +09:26:27.066 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' +09:26:27.066 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +09:26:27.066 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' +09:26:27.067 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[1] to class 'double[]' +09:26:27.067 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '2.2' to type 'Double' +09:26:27.067 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +09:26:27.068 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '2.2' +09:26:27.080 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[1] to class 'java.lang.String[]' +09:26:27.081 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'threedefault' to type 'String' +09:26:27.105 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' +09:26:27.106 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' +09:26:27.106 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +09:26:27.106 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' +09:26:27.107 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' +09:26:27.120 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' +09:26:27.120 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +09:26:27.121 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' +09:26:27.121 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' +09:26:27.122 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' +09:26:27.122 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +09:26:27.122 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' +09:26:27.123 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '80' to class 'int' +09:26:27.123 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '80' to type 'Integer' +09:26:27.123 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +09:26:27.124 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '80' +09:26:27.141 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' +09:26:27.141 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' +09:26:27.141 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +09:26:27.141 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' +09:26:27.144 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' +09:26:27.144 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' +09:26:27.144 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +09:26:27.144 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' +09:26:27.145 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '3.5' to class 'double' +09:26:27.145 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '3.5' to type 'Double' +09:26:27.145 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +09:26:27.146 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '3.5' +09:26:27.146 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'field3' to class 'java.lang.String' +09:26:27.146 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'field3' to type 'String' +09:26:27.147 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' +09:26:27.147 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' +09:26:27.147 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +09:26:27.147 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' +09:26:27.168 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '2.2' to class 'double' +09:26:27.169 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '2.2' to type 'Double' +09:26:27.169 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +09:26:27.169 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '2.2' +09:26:27.170 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'threedefault' to class 'java.lang.String' +09:26:27.170 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'threedefault' to type 'String' +09:26:27.184 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' +09:26:27.192 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' +09:26:27.193 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +09:26:27.193 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' +09:26:27.194 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' +09:26:27.194 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' +09:26:27.194 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +09:26:27.194 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' +09:26:27.195 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '10' to class 'int' +09:26:27.195 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '10' to type 'Integer' +09:26:27.195 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +09:26:27.208 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '10' +09:26:27.209 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' +09:26:27.209 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' +09:26:27.209 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +09:26:27.210 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' +09:26:27.210 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' +09:26:27.210 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' +09:26:27.211 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +09:26:27.211 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' +09:26:27.211 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '20' to class 'int' +09:26:27.211 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '20' to type 'Integer' +09:26:27.225 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +09:26:27.225 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '20' +09:26:27.238 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' +09:26:27.238 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' +09:26:27.238 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +09:26:27.238 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' +09:26:27.239 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' +09:26:27.244 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' +09:26:27.244 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +09:26:27.244 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' +09:26:27.252 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' +09:26:27.253 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' +09:26:27.253 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +09:26:27.254 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' +09:26:27.254 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '80' to class 'int' +09:26:27.255 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '80' to type 'Integer' +09:26:27.255 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +09:26:27.255 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '80' +09:26:27.256 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' +09:26:27.259 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' +09:26:27.264 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +09:26:27.265 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' +[INFO] Tests run: 17, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.132 s - in edu.cornell.med.icb.io.TestConditionsParser [INFO] Running edu.cornell.med.icb.cli.TestUseModality (-m|--mode) Mode of execution, one of: mode1 @@ -2320,30 +2379,7 @@ [-h|--help] This message. -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.108 s - in edu.cornell.med.icb.cli.TestUseModality -[INFO] Running edu.cornell.med.icb.iterators.TestPreSortedMergeTextFilesLineIterator -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.134 s - in edu.cornell.med.icb.iterators.TestPreSortedMergeTextFilesLineIterator -[INFO] Running edu.cornell.med.icb.iterators.TestTsvLineIterator -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in edu.cornell.med.icb.iterators.TestTsvLineIterator -[INFO] Running edu.cornell.med.icb.iterators.TestTextFileLineIterator -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in edu.cornell.med.icb.iterators.TestTextFileLineIterator -[INFO] Running edu.cornell.med.icb.util.TestBoundedPriorityQueue -[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in edu.cornell.med.icb.util.TestBoundedPriorityQueue -[INFO] Running edu.cornell.med.icb.util.TestSimpleChecksum -[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.027 s - in edu.cornell.med.icb.util.TestSimpleChecksum -[INFO] Running edu.cornell.med.icb.util.TestRandomAdapter -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.039 s - in edu.cornell.med.icb.util.TestRandomAdapter -[INFO] Running edu.cornell.med.icb.util.TestICBFilenameUtils -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in edu.cornell.med.icb.util.TestICBFilenameUtils -[INFO] Running edu.cornell.med.icb.util.TestICBStringNormalizer -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in edu.cornell.med.icb.util.TestICBStringNormalizer -[INFO] Running edu.cornell.med.icb.util.TestVersionUtils -07:14:31.264 [main] DEBUG edu.cornell.med.icb.util.VersionUtils - Implementation-Version: UNKNOWN -07:14:31.267 [main] DEBUG edu.cornell.med.icb.util.VersionUtils - Implementation-Version: UNKNOWN -07:14:31.284 [main] DEBUG edu.cornell.med.icb.util.VersionUtils - Implementation-Version: 2.6 -[WARNING] Tests run: 4, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.003 s - in edu.cornell.med.icb.util.TestVersionUtils -[INFO] Running edu.cornell.med.icb.util.TestICBStringUtils -[INFO] Tests run: 25, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.179 s - in edu.cornell.med.icb.util.TestICBStringUtils +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.082 s - in edu.cornell.med.icb.cli.TestUseModality [INFO] [INFO] Results: [INFO] @@ -2352,8 +2388,8 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 15.522 s -[INFO] Finished at: 2024-08-28T07:14:36-12:00 +[INFO] Total time: 20.488 s +[INFO] Finished at: 2024-08-29T09:26:28+14:00 [INFO] ------------------------------------------------------------------------ create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=maven @@ -2386,15 +2422,15 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 2.434 s -[INFO] Finished at: 2024-08-28T07:14:47-12:00 +[INFO] Total time: 4.572 s +[INFO] Finished at: 2024-08-29T09:26:45+14:00 [INFO] ------------------------------------------------------------------------ mh_resolve_dependencies --non-interactive --offline --build -plibicb-utils-java --base-directory=/build/reproducible-path/icb-utils-2.0.1\+git20161002.afee1d9 --non-explore Analysing pom.xml... > dpkg --search /usr/share/maven-repo/colt/colt/*/* dpkg failed to execute successfully Offline mode. Give up looking for package containing /usr/share/maven-repo/colt/colt -Aug 28, 2024 7:15:02 AM org.debian.maven.packager.DependenciesSolver$ToResolve resolve +Aug 29, 2024 9:27:07 AM org.debian.maven.packager.DependenciesSolver$ToResolve resolve SEVERE: Cannot resolve dependencies in /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/pom.xml: Dependency not found colt:colt:jar:debian ERROR: pom.xml: dependency is not packaged in the Maven repository for Debian: colt:colt:debian @@ -2430,12 +2466,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/32295/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/32295/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/8072 and its subdirectories -I: Current time: Wed Aug 28 07:15:17 -12 2024 -I: pbuilder-time-stamp: 1724872517 +I: removing directory /srv/workspace/pbuilder/32295 and its subdirectories +I: Current time: Thu Aug 29 09:27:36 +14 2024 +I: pbuilder-time-stamp: 1724873256