Diff of the two buildlogs: -- --- b1/build.log 2024-05-30 04:36:19.458115955 +0000 +++ b2/build.log 2024-05-30 04:42:15.542971483 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed May 29 16:30:49 -12 2024 -I: pbuilder-time-stamp: 1717043449 +I: Current time: Thu May 30 18:36:33 +14 2024 +I: pbuilder-time-stamp: 1717043793 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -25,52 +25,84 @@ dpkg-source: info: unpacking kalign_3.4.0-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/21010/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/4214/tmp/hooks/D01_modify_environment starting +debug: Running on virt32c. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 30 04:36 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/4214/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/4214/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='aa6f376e7d5e4d3fb3724f2a2e2dfe7e' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='21010' - PS1='# ' - PS2='> ' + INVOCATION_ID=2b06cc3022a94db599cf5e9f3bf913e3 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=4214 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WC2usAx6/pbuilderrc_skRB --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WC2usAx6/b1 --logfile b1/build.log kalign_3.4.0-1.dsc' - SUDO_GID='114' - SUDO_UID='108' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WC2usAx6/pbuilderrc_9rIt --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WC2usAx6/b2 --logfile b2/build.log kalign_3.4.0-1.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt64a 6.1.0-21-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-armmp-lpae #1 SMP Debian 6.1.90-1 (2024-05-03) armv7l GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 27 07:44 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/21010/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 26 07:43 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/4214/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -164,7 +196,7 @@ Get: 52 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian unstable/main armhf debhelper all 13.15.3 [901 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf libsimde-dev all 0.8.2-1 [465 kB] -Fetched 29.7 MB in 1s (38.4 MB/s) +Fetched 29.7 MB in 1s (44.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19462 files and directories currently installed.) @@ -395,7 +427,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/kalign-3.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../kalign_3.4.0-1_source.changes +I: user script /srv/workspace/pbuilder/4214/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/4214/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/kalign-3.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../kalign_3.4.0-1_source.changes dpkg-buildpackage: info: source package kalign dpkg-buildpackage: info: source version 1:3.4.0-1 dpkg-buildpackage: info: source distribution unstable @@ -446,7 +482,7 @@ -- Compiler c flags : -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -- OpenMP version : 4.5 -- OpenMP flags : -fopenmp --- Configuring done (4.6s) +-- Configuring done (4.0s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: @@ -460,7 +496,7 @@ -- Build files have been written to: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0' dh_auto_build - cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks @@ -468,125 +504,132 @@ make[2]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/depend make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/depend -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib/CMakeFiles/kalign_OBJ.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/depend +make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib/CMakeFiles/tldevel.dir/DependInfo.cmake "--color=" +make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/depend +make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib/CMakeFiles/kalign_OBJ.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib/CMakeFiles/bpm_utest.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib/CMakeFiles/alphabet_utest.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' make -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' +make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build +make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' +make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' +make -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build +make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' make -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/build -[ 1%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -MF CMakeFiles/kalign_OBJ.dir/src/test.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/test.c make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -[ 2%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o +make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' +[ 1%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -MF CMakeFiles/tldevel.dir/src/tldevel.c.o.d -o CMakeFiles/tldevel.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c -[ 4%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o +[ 2%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c +[ 4%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -MF CMakeFiles/kalign_OBJ.dir/src/test.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/test.c +[ 5%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -MF CMakeFiles/bpm_utest.dir/src/tldevel.c.o.d -o CMakeFiles/bpm_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c -[ 5%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o +[ 6%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c -[ 6%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o +[ 8%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c -[ 8%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o +[ 9%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c +[ 10%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -MF CMakeFiles/bpm_utest.dir/src/tlrng.c.o.d -o CMakeFiles/bpm_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c -[ 9%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -MF CMakeFiles/tldevel.dir/src/tlrng.c.o.d -o CMakeFiles/tldevel.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c -[ 10%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o +[ 12%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c -[ 12%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o +[ 13%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -MF CMakeFiles/tldevel.dir/src/tlrng.c.o.d -o CMakeFiles/tldevel.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c +[ 14%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c -[ 13%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -MF CMakeFiles/bpm_utest.dir/src/alphabet.c.o.d -o CMakeFiles/bpm_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c -[ 14%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -MF CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c [ 16%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c -[ 17%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c -[ 18%] Linking C static library libtldevel.a -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cmake -P CMakeFiles/tldevel.dir/cmake_clean_target.cmake -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/tldevel.dir/link.txt --verbose=1 -/usr/bin/ar qc libtldevel.a CMakeFiles/tldevel.dir/src/tldevel.c.o CMakeFiles/tldevel.dir/src/tlmisc.c.o CMakeFiles/tldevel.dir/src/tlrng.c.o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -/usr/bin/ranlib libtldevel.a -make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -[ 18%] Built target tldevel -make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/depend -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib/CMakeFiles/alphabet_utest.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -make -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -[ 20%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c -[ 21%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -MF CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c -[ 22%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_alloc.c -[ 24%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm_test.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm_test.c -[ 25%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c -[ 27%] Linking C executable bpm_utest -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpm_utest.dir/link.txt --verbose=1 -[ 28%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_io.c -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now CMakeFiles/bpm_utest.dir/src/tldevel.c.o CMakeFiles/bpm_utest.dir/src/tlrng.c.o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o CMakeFiles/bpm_utest.dir/src/alphabet.c.o CMakeFiles/bpm_utest.dir/src/bpm.c.o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -o bpm_utest -lm +[ 17%] Linking C executable alphabet_utest +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now CMakeFiles/alphabet_utest.dir/src/tldevel.c.o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -o alphabet_utest make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -[ 28%] Built target bpm_utest +[ 17%] Built target alphabet_utest make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib/CMakeFiles/edist_utest.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' make -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -[ 29%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o +[ 18%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -MF CMakeFiles/edist_utest.dir/src/tldevel.c.o.d -o CMakeFiles/edist_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c -[ 31%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c -[ 32%] Linking C executable alphabet_utest -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now CMakeFiles/alphabet_utest.dir/src/tldevel.c.o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -o alphabet_utest -[ 33%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c +[ 20%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -MF CMakeFiles/bpm_utest.dir/src/alphabet.c.o.d -o CMakeFiles/bpm_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c +[ 21%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -MF CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c +[ 22%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -MF CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c +[ 24%] Linking C static library libtldevel.a +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cmake -P CMakeFiles/tldevel.dir/cmake_clean_target.cmake +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/tldevel.dir/link.txt --verbose=1 +/usr/bin/ar qc libtldevel.a CMakeFiles/tldevel.dir/src/tldevel.c.o CMakeFiles/tldevel.dir/src/tlmisc.c.o CMakeFiles/tldevel.dir/src/tlrng.c.o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o +/usr/bin/ranlib libtldevel.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -[ 33%] Built target alphabet_utest +[ 24%] Built target tldevel make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/depend +[ 25%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib/CMakeFiles/task_utest.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' make -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -[ 35%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_check.c -[ 36%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o +[ 27%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_alloc.c +[ 28%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -MF CMakeFiles/task_utest.dir/src/tldevel.c.o.d -o CMakeFiles/task_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c -[ 37%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_cmp.c -[ 39%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o +[ 29%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c +[ 31%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm_test.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm_test.c +[ 32%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_io.c +[ 33%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -MF CMakeFiles/edist_utest.dir/src/tlrng.c.o.d -o CMakeFiles/edist_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c -[ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_sort.c -[ 41%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o +[ 35%] Linking C executable bpm_utest +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpm_utest.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now CMakeFiles/bpm_utest.dir/src/tldevel.c.o CMakeFiles/bpm_utest.dir/src/tlrng.c.o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o CMakeFiles/bpm_utest.dir/src/alphabet.c.o CMakeFiles/bpm_utest.dir/src/bpm.c.o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -o bpm_utest -lm +[ 36%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c -[ 43%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -MF CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c -[ 44%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o +make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' +[ 36%] Built target bpm_utest +[ 37%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c +[ 39%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_check.c +[ 40%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -MF CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o.d -o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c +[ 41%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c: In function 'main': /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c:58:15: warning: unused variable 'd2' [-Wunused-variable] 58 | float d2; | ^~ -[ 45%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -MF CMakeFiles/kalign_OBJ.dir/src/task.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c -[ 47%] Linking C executable edist_utest +[ 43%] Linking C executable edist_utest cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edist_utest.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now CMakeFiles/edist_utest.dir/src/tldevel.c.o CMakeFiles/edist_utest.dir/src/tlrng.c.o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -o edist_utest -lm +make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' +[ 44%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_cmp.c +[ 44%] Built target edist_utest +[ 45%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_sort.c +[ 48%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o +[ 48%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -MF CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -MF CMakeFiles/kalign_OBJ.dir/src/task.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c +[ 50%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/task.c.o -MF CMakeFiles/task_utest.dir/src/task.c.o.d -o CMakeFiles/task_utest.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 94 | fscanf( f_ptr, "%d", &n_tasks); @@ -594,19 +637,6 @@ /build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now CMakeFiles/edist_utest.dir/src/tldevel.c.o CMakeFiles/edist_utest.dir/src/tlrng.c.o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -o edist_utest -lm -make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -[ 47%] Built target edist_utest -[ 48%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c -[ 50%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bisectingKmeans.c -[ 51%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c -[ 52%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/task.c.o -MF CMakeFiles/task_utest.dir/src/task.c.o.d -o CMakeFiles/task_utest.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c -[ 54%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bpm.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks': /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 94 | fscanf( f_ptr, "%d", &n_tasks); @@ -614,9 +644,15 @@ /build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 55%] Linking C executable task_utest +[ 51%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bisectingKmeans.c +[ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c +[ 54%] Linking C executable task_utest cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/task_utest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now CMakeFiles/task_utest.dir/src/tldevel.c.o CMakeFiles/task_utest.dir/src/tlrng.c.o CMakeFiles/task_utest.dir/src/task.c.o -o task_utest -lm +[ 55%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bpm.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' [ 55%] Built target task_utest [ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o @@ -629,10 +665,10 @@ cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_param.c [ 62%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_run.c -[ 63%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_setup.c -[ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o +[ 63%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_mem.c +[ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_setup.c [ 66%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_controller.c [ 67%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o @@ -652,118 +688,130 @@ make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib/CMakeFiles/kalign_static.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/build -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' make -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/build -[ 72%] Linking C static library libkalign_static.a -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cmake -P CMakeFiles/kalign_static.dir/cmake_clean_target.cmake +make -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/build +make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_static.dir/link.txt --verbose=1 [ 74%] Linking C static library libkalign.a +[ 74%] Linking C static library libkalign_static.a +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cmake -P CMakeFiles/kalign_static.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cmake -P CMakeFiles/kalign.dir/cmake_clean_target.cmake cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign.dir/link.txt --verbose=1 +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_static.dir/link.txt 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+make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests/CMakeFiles/dssim.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' make -f 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tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/depend +make -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/depend make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests/CMakeFiles/kalign_lib_test.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim.c.o -MF CMakeFiles/dssim.dir/dssim.c.o.d -o CMakeFiles/dssim.dir/dssim.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim.c +make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -[ 86%] Built target kalignfmt +[ 90%] Built target largebench +make -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/depend +make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf 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-ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c +[ 91%] Built target kalign-bin make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/depend +[ 93%] Building C object tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -MF CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o.d -o CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_cmp_test.c make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf 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CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_cmp_test.c make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/build make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -[ 89%] Building CXX object tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o +[ 94%] Building CXX object tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests && /usr/bin/c++ -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE 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../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/arm-linux-gnueabihf/13/libgomp.so /usr/lib/arm-linux-gnueabihf/libpthread.a -[ 91%] Linking C executable kalign_cmp_test +[ 95%] Linking C executable kalign_cmp_test cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_cmp_test.dir/link.txt --verbose=1 +[ 97%] Linking C executable kalign_lib_test +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_lib_test.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -o kalign_cmp_test ../lib/libkalign.a -lm /usr/lib/gcc/arm-linux-gnueabihf/13/libgomp.so /usr/lib/arm-linux-gnueabihf/libpthread.a +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -o kalign_lib_test ../lib/libkalign.a -lm /usr/lib/gcc/arm-linux-gnueabihf/13/libgomp.so /usr/lib/arm-linux-gnueabihf/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' +[ 97%] Built target kalign_cmp_test make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -[ 91%] Built target dssim -make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/depend -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src/CMakeFiles/kalign-bin.dir/DependInfo.cmake "--color=" -[ 91%] Built target kalign_cmp_test -make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/depend -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests/CMakeFiles/largebench.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -make -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/build -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' +[ 97%] Built target kalign_lib_test +[ 98%] Linking C executable dssim +cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/dssim.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/dssim.dir/dssim_test.c.o CMakeFiles/dssim.dir/dssim.c.o -o dssim ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/arm-linux-gnueabihf/13/libgomp.so /usr/lib/arm-linux-gnueabihf/libpthread.a make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -make -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/build -[ 93%] Building C object src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -MF CMakeFiles/kalign-bin.dir/run_kalign.c.o.d -o CMakeFiles/kalign-bin.dir/run_kalign.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_kalign.c -[ 94%] Building C object tests/CMakeFiles/largebench.dir/large_benchmark.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/largebench.dir/large_benchmark.c.o -MF CMakeFiles/largebench.dir/large_benchmark.c.o.d -o CMakeFiles/largebench.dir/large_benchmark.c.o -c /build/reproducible-path/kalign-3.4.0/tests/large_benchmark.c +[ 98%] Built target dssim /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp: In function 'int main()': /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:10:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 10 | "GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE", @@ -777,31 +825,19 @@ /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:13:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 13 | "MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 95%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c -[ 97%] Linking C executable kalign -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign-bin.dir/link.txt --verbose=1 -[ 98%] Linking CXX executable kaligncpp +[100%] Linking CXX executable kaligncpp cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kaligncpp.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now "CMakeFiles/kalign-bin.dir/run_kalign.c.o" "CMakeFiles/kalign-bin.dir/parameters.c.o" -o kalign ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/arm-linux-gnueabihf/13/libgomp.so /usr/lib/arm-linux-gnueabihf/libpthread.a /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -o kaligncpp ../lib/libkalign.a -lm /usr/lib/gcc/arm-linux-gnueabihf/13/libgomp.so /usr/lib/arm-linux-gnueabihf/libpthread.a -[100%] Linking C executable largebench -cd /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/largebench.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/largebench.dir/large_benchmark.c.o -o largebench ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/arm-linux-gnueabihf/13/libgomp.so /usr/lib/arm-linux-gnueabihf/libpthread.a -make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -[100%] Built target kalign-bin -make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' -[100%] Built target largebench make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' [100%] Built target kaligncpp make[2]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' dh_auto_test - cd obj-arm-linux-gnueabihf && make -j3 test ARGS\+=--verbose ARGS\+=-j3 + cd obj-arm-linux-gnueabihf && make -j4 test ARGS\+=--verbose ARGS\+=-j4 make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j3 +/usr/bin/ctest --force-new-ctest-process --verbose -j4 UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/DartConfiguration.tcl Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/DartConfiguration.tcl @@ -831,8 +867,14 @@ 3: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib/edist_utest 3: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib 3: Test timeout computed to be: 1500 +test 4 + Start 4: task_utest + +4: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib/task_utest +4: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib +4: Test timeout computed to be: 1500 1: LEN: 256 -1: [2024-05-30 04:32:44] : LOG : Testing correctness of serial bpm. +1: [2024-05-30 04:37:49] : LOG : Testing correctness of serial bpm. 2: LEN: 21 2: @ -1 2: A 0 @@ -965,84 +1007,89 @@ 2: ] -1 2: ^ -1 2: _ -1 -3: [2024-05-30 04:32:44] : LOG : Check for correctness. -3: [2024-05-30 04:32:44] : LOG : Timing serial - 1/12 Test #2: alphabet_utest ................... Passed 0.04 sec -test 4 - Start 4: task_utest - -4: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib/task_utest -4: Working Directory: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/lib -4: Test timeout computed to be: 1500 -4: 468 143 352 234 105 -4: 377 789 953 136 153 -4: 105 732 555 597 163 -4: 94 407 307 554 296 -4: 395 364 457 138 141 -4: 104 14 497 721 358 -4: 120 990 826 144 969 -4: 138 997 643 763 635 -4: 727 912 780 892 823 -4: 294 631 704 205 409 -4: 192 515 206 14 26 -4: 340 639 63 156 724 -4: 968 418 493 283 391 -4: 162 162 794 667 865 -4: 680 991 73 947 600 -4: 868 264 504 210 861 -4: 977 150 340 927 613 -4: 258 726 155 995 153 -4: 152 330 608 544 182 -4: 697 307 586 679 832 -4: 237 363 346 187 484 -4: 579 41 291 497 291 -4: 692 101 568 811 337 -4: 672 194 892 524 605 -4: 534 852 0 414 55 -4: 855 779 241 37 609 -4: 526 358 677 387 350 -4: 984 763 546 883 859 -4: 583 893 30 85 117 -4: 980 929 517 279 323 -4: 187 574 135 90 500 -4: 163 924 568 780 713 -4: 578 364 753 209 272 -4: 542 335 426 871 44 -4: 105 988 554 159 310 -4: 829 755 422 664 623 -4: 373 792 695 178 115 -4: 804 68 393 664 206 -4: 280 694 87 894 969 -4: 990 756 67 57 793 -4: 278 245 890 740 845 -4: 502 202 452 611 254 -4: 911 926 312 286 879 -4: 590 862 927 383 340 -4: 592 145 306 962 667 -4: 552 669 8 434 622 -4: 976 321 920 159 8 -4: 725 748 3 615 322 -4: 274 157 752 288 414 -4: 949 779 825 693 355 -4: 101 450 838 244 430 -4: 574 624 931 296 103 -4: 280 352 671 806 843 -4: 947 358 808 593 212 - 2/12 Test #4: task_utest ....................... Passed 0.01 sec +3: [2024-05-30 04:37:49] : LOG : Check for correctness. +3: [2024-05-30 04:37:49] : LOG : Timing serial + 1/12 Test #2: alphabet_utest ................... Passed 0.02 sec test 5 Start 5: C++Lib 5: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests/kaligncpp 5: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 5: Test timeout computed to be: 1500 -3: [2024-05-30 04:32:44] : LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00 - 3/12 Test #3: edist_utest ...................... Passed 0.06 sec +4: 862 688 732 733 512 +4: 400 600 795 356 34 +4: 131 106 50 945 333 +4: 336 861 414 113 756 +4: 319 778 610 461 233 +4: 868 608 393 403 737 +4: 963 119 54 907 653 +4: 180 306 226 666 470 +4: 9 37 736 528 145 +4: 1 673 574 33 998 +4: 659 321 494 661 567 +4: 959 924 249 898 750 +4: 441 755 123 333 507 +4: 197 916 504 197 392 +4: 861 313 819 887 464 +4: 102 197 178 726 191 +4: 600 731 660 554 606 +4: 605 207 79 297 987 +4: 321 397 57 951 642 +4: 417 95 399 791 541 +4: 779 605 512 707 512 +4: 744 192 651 760 260 +4: 211 312 605 159 531 +4: 907 223 554 147 110 +4: 847 801 65 387 693 +4: 650 455 388 710 725 +4: 887 221 387 481 495 +4: 299 766 458 68 221 +4: 404 842 876 340 162 +4: 650 915 960 276 150 +4: 25 0 864 983 468 +4: 4 261 300 764 141 +4: 686 777 373 830 529 +4: 614 423 399 443 650 +4: 687 796 45 504 92 +4: 931 709 787 341 150 +4: 697 919 399 631 438 +4: 396 305 513 554 996 +4: 732 52 78 864 413 +4: 347 105 832 655 229 +4: 964 306 56 256 164 +4: 384 854 627 393 440 +4: 284 732 874 292 535 +4: 494 614 264 645 351 +4: 706 616 864 595 498 +4: 466 514 333 595 536 +4: 786 862 165 128 378 +4: 203 918 64 191 419 +4: 622 299 881 697 928 +4: 998 278 980 592 161 +4: 140 786 46 506 941 +4: 194 284 622 466 941 +4: 468 484 769 928 858 +4: 335 645 973 766 848 + 2/12 Test #4: task_utest ....................... Passed 0.02 sec test 6 Start 6: kalign_itest_BB11001.tfa 6: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa" 6: Working Directory: /build/reproducible-path/kalign-3.4.0/tests 6: Test timeout computed to be: 1500 +3: [2024-05-30 04:37:49] : LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00 + 3/12 Test #3: edist_utest ...................... Passed 0.03 sec +test 7 + Start 7: kalign_itest_BB11001_EOF.msf + +7: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf" +7: Working Directory: /build/reproducible-path/kalign-3.4.0/tests +7: Test timeout computed to be: 1500 +5: Aligned: +5: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------- +5: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK +5: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- +5: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 6: 6: Kalign (3.4.0) 6: @@ -1059,27 +1106,22 @@ 6: Bioinformatics (2019) 6: https://doi.org/10.1093/bioinformatics/btz795 6: -6: [2024-05-30 04:32:44] : LOG : Detected protein sequences. -6: [2024-05-30 04:32:44] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa. -6: [2024-05-30 04:32:44] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -6: [2024-05-30 04:32:44] : LOG : Calculating pairwise distances -6: [2024-05-30 04:32:44] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -6: [2024-05-30 04:32:44] : LOG : Building guide tree. -5: Aligned: -5: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------- -5: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK -5: MKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NL-DLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK--- -5: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK -6: [2024-05-30 04:32:44] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -6: [2024-05-30 04:32:44] : LOG : Aligning - 4/12 Test #5: C++Lib ........................... Passed 0.04 sec -test 7 - Start 7: kalign_itest_BB11001_EOF.msf +6: [2024-05-30 04:37:49] : LOG : Detected protein sequences. +6: [2024-05-30 04:37:49] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa. +6: [2024-05-30 04:37:49] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +6: [2024-05-30 04:37:49] : LOG : Calculating pairwise distances + 4/12 Test #5: C++Lib ........................... Passed 0.02 sec +test 8 + Start 8: kalign_itest_BB12006.msf -7: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf" -7: Working Directory: /build/reproducible-path/kalign-3.4.0/tests -7: Test timeout computed to be: 1500 -6: [2024-05-30 04:32:44] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 +8: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf" +8: Working Directory: /build/reproducible-path/kalign-3.4.0/tests +8: Test timeout computed to be: 1500 +6: [2024-05-30 04:37:49] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +6: [2024-05-30 04:37:49] : LOG : Building guide tree. +6: [2024-05-30 04:37:49] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +6: [2024-05-30 04:37:49] : LOG : Aligning +6: [2024-05-30 04:37:49] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 6: >1aab_ 6: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 6: KFEDMAKADKARYEREMKTYIPPKGE---------- @@ -1108,21 +1150,12 @@ 7: Bioinformatics (2019) 7: https://doi.org/10.1093/bioinformatics/btz795 7: -7: [2024-05-30 04:32:44] : LOG : Detected protein sequences. -7: [2024-05-30 04:32:44] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf. -7: [2024-05-30 04:32:44] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -7: [2024-05-30 04:32:44] : LOG : Calculating pairwise distances - 5/12 Test #6: kalign_itest_BB11001.tfa ......... Passed 0.05 sec -test 8 - Start 8: kalign_itest_BB12006.msf - -8: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf" -8: Working Directory: /build/reproducible-path/kalign-3.4.0/tests -8: Test timeout computed to be: 1500 -7: [2024-05-30 04:32:44] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -7: [2024-05-30 04:32:44] : LOG : Building guide tree. -7: [2024-05-30 04:32:44] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -7: [2024-05-30 04:32:44] : LOG : Aligning +7: [2024-05-30 04:37:49] : LOG : Detected protein sequences. +7: [2024-05-30 04:37:49] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf. +7: [2024-05-30 04:37:49] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +7: [2024-05-30 04:37:49] : LOG : Calculating pairwise distances +7: [2024-05-30 04:37:49] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +7: [2024-05-30 04:37:49] : LOG : Building guide tree. 8: 8: Kalign (3.4.0) 8: @@ -1139,13 +1172,20 @@ 8: Bioinformatics (2019) 8: https://doi.org/10.1093/bioinformatics/btz795 8: -8: [2024-05-30 04:32:44] : LOG : Detected protein sequences. -8: [2024-05-30 04:32:44] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf. -8: [2024-05-30 04:32:44] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -8: [2024-05-30 04:32:44] : LOG : Calculating pairwise distances -8: [2024-05-30 04:32:44] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 -8: [2024-05-30 04:32:44] : LOG : Building guide tree. -7: [2024-05-30 04:32:44] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 +8: [2024-05-30 04:37:49] : LOG : Detected protein sequences. +8: [2024-05-30 04:37:49] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf. +8: [2024-05-30 04:37:49] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +8: [2024-05-30 04:37:49] : LOG : Calculating pairwise distances + 5/12 Test #6: kalign_itest_BB11001.tfa ......... Passed 0.03 sec +test 9 + Start 9: kalign_itest_BB12006.tfa + +9: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa" +9: Working Directory: /build/reproducible-path/kalign-3.4.0/tests +9: Test timeout computed to be: 1500 +7: [2024-05-30 04:37:49] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +7: [2024-05-30 04:37:49] : LOG : Aligning +7: [2024-05-30 04:37:49] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 7: >1aab_ 7: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 7: KFEDMAKADKARYEREMKTYIPPKGE---------- @@ -1158,36 +1198,18 @@ 7: >2lef_A 7: --------MHIKKPLNAFMLYMKEMRANVVAESTLKE-SA-AINQILGRRWHALSREEQA 7: KYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK - 6/12 Test #7: kalign_itest_BB11001_EOF.msf ..... Passed 0.05 sec -test 9 - Start 9: kalign_itest_BB12006.tfa +8: [2024-05-30 04:37:49] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +8: [2024-05-30 04:37:49] : LOG : Building guide tree. +8: [2024-05-30 04:37:49] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +8: [2024-05-30 04:37:49] : LOG : Aligning + 6/12 Test #7: kalign_itest_BB11001_EOF.msf ..... Passed 0.04 sec +test 10 + Start 10: kalign_itest_BB30014.msf -9: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa" -9: Working Directory: /build/reproducible-path/kalign-3.4.0/tests -9: Test timeout computed to be: 1500 -8: [2024-05-30 04:32:44] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -8: [2024-05-30 04:32:44] : LOG : Aligning -9: -9: Kalign (3.4.0) -9: -9: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann -9: -9: This program comes with ABSOLUTELY NO WARRANTY; for details type: -9: `kalign -showw'. -9: This is free software, and you are welcome to redistribute it -9: under certain conditions; consult the COPYING file for details. -9: -9: Please cite: -9: Lassmann, Timo. -9: "Kalign 3: multiple sequence alignment of large data sets." -9: Bioinformatics (2019) -9: https://doi.org/10.1093/bioinformatics/btz795 -9: -9: [2024-05-30 04:32:44] : LOG : Detected protein sequences. -9: [2024-05-30 04:32:44] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. -9: [2024-05-30 04:32:44] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -9: [2024-05-30 04:32:44] : LOG : Calculating pairwise distances -8: [2024-05-30 04:32:44] : LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00 +10: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa" +10: Working Directory: /build/reproducible-path/kalign-3.4.0/tests +10: Test timeout computed to be: 1500 +8: [2024-05-30 04:37:49] : LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00 8: >1al2_ad 8: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 8: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF @@ -1212,15 +1234,37 @@ 8: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 8: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 8: Q---- - 7/12 Test #8: kalign_itest_BB12006.msf ......... Passed 0.06 sec -test 10 - Start 10: kalign_itest_BB30014.msf +9: +9: Kalign (3.4.0) +9: +9: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann +9: +9: This program comes with ABSOLUTELY NO WARRANTY; for details type: +9: `kalign -showw'. +9: This is free software, and you are welcome to redistribute it +9: under certain conditions; consult the COPYING file for details. +9: +9: Please cite: +9: Lassmann, Timo. +9: "Kalign 3: multiple sequence alignment of large data sets." +9: Bioinformatics (2019) +9: https://doi.org/10.1093/bioinformatics/btz795 +9: +9: [2024-05-30 04:37:49] : LOG : Detected protein sequences. +9: [2024-05-30 04:37:49] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. +9: [2024-05-30 04:37:49] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +9: [2024-05-30 04:37:49] : LOG : Calculating pairwise distances + 7/12 Test #8: kalign_itest_BB12006.msf ......... Passed 0.05 sec +test 11 + Start 11: kalign_itest_BB30014.tfa -10: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa" -10: Working Directory: /build/reproducible-path/kalign-3.4.0/tests -10: Test timeout computed to be: 1500 -9: [2024-05-30 04:32:44] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -9: [2024-05-30 04:32:44] : LOG : Building guide tree. +11: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa" +11: Working Directory: /build/reproducible-path/kalign-3.4.0/tests +11: Test timeout computed to be: 1500 +9: [2024-05-30 04:37:49] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +9: [2024-05-30 04:37:49] : LOG : Building guide tree. +9: [2024-05-30 04:37:49] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +9: [2024-05-30 04:37:49] : LOG : Aligning 10: 10: Kalign (3.4.0) 10: @@ -1237,17 +1281,15 @@ 10: Bioinformatics (2019) 10: https://doi.org/10.1093/bioinformatics/btz795 10: -10: [2024-05-30 04:32:44] : LOG : Detected protein sequences. -10: [2024-05-30 04:32:44] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. -10: [2024-05-30 04:32:44] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -10: [2024-05-30 04:32:44] : LOG : Calculating pairwise distances -9: [2024-05-30 04:32:44] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -9: [2024-05-30 04:32:44] : LOG : Aligning -10: [2024-05-30 04:32:44] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -10: [2024-05-30 04:32:44] : LOG : Building guide tree. -10: [2024-05-30 04:32:44] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -10: [2024-05-30 04:32:44] : LOG : Aligning -9: [2024-05-30 04:32:44] : LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00 +10: [2024-05-30 04:37:49] : LOG : Detected protein sequences. +10: [2024-05-30 04:37:49] : LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa. +10: [2024-05-30 04:37:49] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +10: [2024-05-30 04:37:49] : LOG : Calculating pairwise distances +10: [2024-05-30 04:37:49] : LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00 +10: [2024-05-30 04:37:49] : LOG : Building guide tree. +10: [2024-05-30 04:37:49] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +10: [2024-05-30 04:37:49] : LOG : Aligning +9: [2024-05-30 04:37:49] : LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00 9: >1al2_ad 9: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 9: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF @@ -1272,14 +1314,34 @@ 9: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 9: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 9: Q---- - 8/12 Test #9: kalign_itest_BB12006.tfa ......... Passed 0.08 sec -test 11 - Start 11: kalign_itest_BB30014.tfa + 8/12 Test #9: kalign_itest_BB12006.tfa ......... Passed 0.05 sec +test 12 + Start 12: DSSIM_takes_a_min -11: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa" -11: Working Directory: /build/reproducible-path/kalign-3.4.0/tests -11: Test timeout computed to be: 1500 -10: [2024-05-30 04:32:44] : LOG : CPU Time: 0.02u 00:00:00.02 Elapsed: 00:00:00.00 +12: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests/dssim +12: Working Directory: /build/reproducible-path/kalign-3.4.0/tests +12: Test timeout computed to be: 1500 +11: +11: Kalign (3.4.0) +11: +11: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann +11: +11: This program comes with ABSOLUTELY NO WARRANTY; for details type: +11: `kalign -showw'. +11: This is free software, and you are welcome to redistribute it +11: under certain conditions; consult the COPYING file for details. +11: +11: Please cite: +11: Lassmann, Timo. +11: "Kalign 3: multiple sequence alignment of large data sets." +11: Bioinformatics (2019) +11: https://doi.org/10.1093/bioinformatics/btz795 +11: +11: [2024-05-30 04:37:49] : LOG : Detected protein sequences. +11: [2024-05-30 04:37:49] : LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa. +11: [2024-05-30 04:37:49] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 +11: [2024-05-30 04:37:49] : LOG : Calculating pairwise distances +10: [2024-05-30 04:37:49] : LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00 10: >1al2_ad 10: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS 10: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF @@ -1304,46 +1366,20 @@ 10: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM 10: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP 10: Q---- - 9/12 Test #10: kalign_itest_BB30014.msf ......... Passed 0.07 sec -test 12 - Start 12: DSSIM_takes_a_min - -12: Test command: /build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf/tests/dssim -12: Working Directory: /build/reproducible-path/kalign-3.4.0/tests -12: Test timeout computed to be: 1500 -11: -11: Kalign (3.4.0) -11: -11: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann -11: -11: This program comes with ABSOLUTELY NO WARRANTY; for details type: -11: `kalign -showw'. -11: This is free software, and you are welcome to redistribute it -11: under certain conditions; consult the COPYING file for details. -11: -11: Please cite: -11: Lassmann, Timo. -11: "Kalign 3: multiple sequence alignment of large data sets." -11: Bioinformatics (2019) -11: https://doi.org/10.1093/bioinformatics/btz795 -11: -11: [2024-05-30 04:32:44] : LOG : Detected protein sequences. -11: [2024-05-30 04:32:44] : LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa. -11: [2024-05-30 04:32:44] : LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00 -11: [2024-05-30 04:32:44] : LOG : Calculating pairwise distances -12: [2024-05-30 04:32:44] : LOG : DSSim - a simplistic sequence simulator. -12: [2024-05-30 04:32:44] : LOG : Protein alignments - 20 seq -11: [2024-05-30 04:32:44] : LOG : CPU Time: 0.05u 00:00:00.04 Elapsed: 00:00:00.00 -11: [2024-05-30 04:32:44] : LOG : Building guide tree. +12: [2024-05-30 04:37:49] : LOG : DSSim - a simplistic sequence simulator. +12: [2024-05-30 04:37:49] : LOG : Protein alignments - 20 seq + 9/12 Test #10: kalign_itest_BB30014.msf ......... Passed 0.06 sec +11: [2024-05-30 04:37:49] : LOG : CPU Time: 0.04u 00:00:00.04 Elapsed: 00:00:00.00 +11: [2024-05-30 04:37:49] : LOG : Building guide tree. +11: [2024-05-30 04:37:50] : LOG : CPU Time: 0.06u 00:00:00.06 Elapsed: 00:00:01.00 +11: [2024-05-30 04:37:50] : LOG : Aligning 1: 0 6300 0 0 1: 0 0 6300 6300 1: 0 0 0 0 1: 0 0 0 0 1: -1: [2024-05-30 04:32:44] : LOG : Testing correctness of AVX bpm. -11: [2024-05-30 04:32:44] : LOG : CPU Time: 0.06u 00:00:00.05 Elapsed: 00:00:00.00 -11: [2024-05-30 04:32:44] : LOG : Aligning -11: [2024-05-30 04:32:44] : LOG : CPU Time: 0.20u 00:00:00.20 Elapsed: 00:00:00.00 +1: [2024-05-30 04:37:50] : LOG : Testing correctness of AVX bpm. +11: [2024-05-30 04:37:50] : LOG : CPU Time: 0.20u 00:00:00.19 Elapsed: 00:00:00.00 11: >1ags_A 11: ----------------------------------AEKPKLHYFNARGRMESTRWLLAAAG 11: VEFEEKFIKSAEDLDKLRNDG--YLMFQQVPMVEI-----DG--MKLVQTRAILNYIA-- @@ -1652,40 +1688,40 @@ 11: ----KNPDLREEKFA-DIKKAYDNAEQLLT----GDFYS-GTSKPGFVDYLLYPNIQRAY 11: WAAHIVPDFPLEAESFPGPN-YPRLSKWYKAL-ESIPEVAAASQPTENGVGFFKDYLGGS 11: PNYDYGLTKLSETI -10/12 Test #11: kalign_itest_BB30014.tfa ......... Passed 0.43 sec +10/12 Test #11: kalign_itest_BB30014.tfa ......... Passed 0.30 sec 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 0 0 0 0 1: 1: Dyn AVX DYN/AVX -1: [2024-05-30 04:32:59] : LOG : Timing DYN 256 -1: [2024-05-30 04:33:06] : LOG : 3.610084 - dyn -1: [2024-05-30 04:33:06] : LOG : 0.000000 - bpm -1: [2024-05-30 04:33:06] : LOG : 0.257509 - bpm_block2 -1: [2024-05-30 04:33:06] : LOG : 0.289960 - bpm_block -11/12 Test #1: bpm_utest ........................ Passed 21.98 sec +1: [2024-05-30 04:38:04] : LOG : Timing DYN 256 +1: [2024-05-30 04:38:09] : LOG : 3.565782 - dyn +1: [2024-05-30 04:38:09] : LOG : 0.000000 - bpm +1: [2024-05-30 04:38:09] : LOG : 0.253590 - bpm_block2 +1: [2024-05-30 04:38:09] : LOG : 0.282825 - bpm_block +11/12 Test #1: bpm_utest ........................ 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[==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 99% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% [==================================================] 100% -12: [2024-05-30 04:34:59] : LOG : DNA alignments - 1000 seq +12: [2024-05-30 04:40:30] : LOG : DNA alignments - 1000 seq 12: [ ] 0% [===== ] 10% [========== ] 20% [=============== ] 30% [==================== ] 40% [========================= ] 50% [============================== ] 60% [=================================== ] 70% [======================================== ] 80% [============================================= ] 90% [==================================================] 100% -12: [2024-05-30 04:35:31] : LOG : DNA alignments - 10000 seq +12: [2024-05-30 04:41:14] : LOG : DNA alignments - 10000 seq 12: [ ] 0% [========================= ] 50% [==================================================] 100% -12/12 Test #12: DSSIM_takes_a_min ................ Passed 191.69 sec +12/12 Test #12: DSSIM_takes_a_min ................ Passed 235.34 sec 100% tests passed, 0 tests failed out of 12 -Total Test time (real) = 191.97 sec +Total Test time (real) = 235.46 sec make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/kalign/ - cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/reproducible-path/kalign-3.4.0/debian/kalign AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/reproducible-path/kalign-3.4.0/debian/kalign AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -1739,12 +1775,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/4214/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/4214/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/21010 and its subdirectories -I: Current time: Wed May 29 16:36:13 -12 2024 -I: pbuilder-time-stamp: 1717043773 +I: removing directory /srv/workspace/pbuilder/4214 and its subdirectories +I: Current time: Thu May 30 18:42:10 +14 2024 +I: pbuilder-time-stamp: 1717044130