Diff of the two buildlogs: -- --- b1/build.log 2025-01-28 05:49:42.166153452 +0000 +++ b2/build.log 2025-01-28 06:03:35.588527583 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Jan 27 17:36:21 -12 2025 -I: pbuilder-time-stamp: 1738042581 +I: Current time: Tue Jan 28 19:50:15 +14 2025 +I: pbuilder-time-stamp: 1738043415 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -25,52 +25,84 @@ dpkg-source: info: applying unforce-cxxflags.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/21625/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/12494/tmp/hooks/D01_modify_environment starting +debug: Running on ff4a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 28 05:50 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/12494/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/12494/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='cf30965efde74dc6a51e5ce9405694c1' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='21625' - PS1='# ' - PS2='> ' + INVOCATION_ID=b750274737f8436daa37d6ed7c895e24 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=12494 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TStG3eRW/pbuilderrc_r4CG --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TStG3eRW/b1 --logfile b1/build.log libbpp-core_2.4.1-13.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TStG3eRW/pbuilderrc_qn46 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TStG3eRW/b2 --logfile b2/build.log libbpp-core_2.4.1-13.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt64c 6.1.0-30-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-30-armmp-lpae #1 SMP Debian 6.1.124-1 (2025-01-12) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/21625/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/12494/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -170,7 +202,7 @@ Get: 58 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian unstable/main armhf debhelper all 13.24.1 [920 kB] -Fetched 33.3 MB in 1s (35.9 MB/s) +Fetched 33.3 MB in 2s (13.8 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19568 files and directories currently installed.) @@ -425,7 +457,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libbpp-core-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbpp-core_2.4.1-13_source.changes +I: user script /srv/workspace/pbuilder/12494/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/12494/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libbpp-core-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbpp-core_2.4.1-13_source.changes dpkg-buildpackage: info: source package libbpp-core dpkg-buildpackage: info: source version 2.4.1-13 dpkg-buildpackage: info: source distribution unstable @@ -457,7 +493,7 @@ -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) --- Configuring done (1.0s) +-- Configuring done (1.1s) -- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: @@ -469,7 +505,7 @@ -- Build files have been written to: /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf dh_auto_build - cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/libbpp-core-2.4.1 -B/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks @@ -483,28 +519,36 @@ cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-core-2.4.1 /build/reproducible-path/libbpp-core-2.4.1/src /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-core-shared.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' -make -f src/CMakeFiles/bpp-core-shared.dir/build.make src/CMakeFiles/bpp-core-shared.dir/build make -f src/CMakeFiles/bpp-core-static.dir/build.make src/CMakeFiles/bpp-core-static.dir/build +make -f src/CMakeFiles/bpp-core-shared.dir/build.make src/CMakeFiles/bpp-core-shared.dir/build make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' -[ 0%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/App/ApplicationTools.cpp.o -[ 0%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/App/ApplicationTools.cpp.o -[ 0%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/App/BppApplication.cpp.o +[ 1%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/App/ApplicationTools.cpp.o +[ 1%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/App/BppApplication.cpp.o +[ 1%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/App/ApplicationTools.cpp.o +[ 1%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/App/BppApplication.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/App/BppApplication.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/App/BppApplication.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/App/BppApplication.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/App/BppApplication.cpp cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/App/ApplicationTools.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/App/ApplicationTools.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/App/ApplicationTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/App/ApplicationTools.cpp cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/App/ApplicationTools.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/App/ApplicationTools.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/App/ApplicationTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/App/ApplicationTools.cpp cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/App/BppApplication.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/App/BppApplication.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/App/BppApplication.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/App/BppApplication.cpp -[ 1%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/App/NumCalcApplicationTools.cpp.o +[ 1%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/App/NumCalcApplicationTools.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/App/NumCalcApplicationTools.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/App/NumCalcApplicationTools.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/App/NumCalcApplicationTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/App/NumCalcApplicationTools.cpp +[ 2%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/App/NumCalcApplicationTools.cpp.o cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/App/NumCalcApplicationTools.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/App/NumCalcApplicationTools.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/App/NumCalcApplicationTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/App/NumCalcApplicationTools.cpp -[ 1%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/BppString.cpp.o +[ 2%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/BppString.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/BppString.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/BppString.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/BppString.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/BppString.cpp +[ 2%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/BppString.cpp.o cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/BppString.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/BppString.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/BppString.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/BppString.cpp -[ 2%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/App/BppApplication.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/App/BppApplication.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/App/BppApplication.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/App/BppApplication.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/App/BppApplication.cpp -[ 3%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Exceptions.cpp.o +[ 3%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Exceptions.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Exceptions.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Exceptions.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Exceptions.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Exceptions.cpp +[ 4%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Exceptions.cpp.o cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Exceptions.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Exceptions.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Exceptions.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Exceptions.cpp -[ 3%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Graph/GlobalGraph.cpp.o +[ 4%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Graph/GlobalGraph.cpp.o cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Graph/GlobalGraph.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Graph/GlobalGraph.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Graph/GlobalGraph.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.cpp -[ 4%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/ColorTools.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/ColorTools.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/ColorTools.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/ColorTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graphics/ColorTools.cpp +[ 4%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Graph/GlobalGraph.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Graph/GlobalGraph.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Graph/GlobalGraph.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Graph/GlobalGraph.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.cpp +[ 5%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Graphics/ColorTools.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Graphics/ColorTools.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Graphics/ColorTools.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Graphics/ColorTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graphics/ColorTools.cpp In file included from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.cpp:49: /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:751:3: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 751 | ~NodesIteratorClass(){} @@ -546,6 +590,23 @@ 846 | ~NodesIteratorClass(){} | ^ /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:846:3: note: remove the '< >' +In file included from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.cpp:49: +/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:751:3: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] + 751 | ~NodesIteratorClass(){} + | ^ +/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:751:3: note: remove the '< >' +/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:768:52: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 768 | NodesIteratorClass(const GlobalGraph &gg, typename std::enable_if::type * = 0) : it_(gg.nodeStructure_.begin()), + | ^ +/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:768:52: note: remove the '< >' +/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:773:53: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 773 | NodesIteratorClass(GlobalGraph & gg, typename std::enable_if::type * = 0) : it_(gg.nodeStructure_.begin()), + | ^~~~~~~~~~~ +/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:773:53: note: remove the '< >' +/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:777:3: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] + 777 | ~NodesIteratorClass(){} + | ^ +/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:777:3: note: remove the '< >' /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:862:60: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 862 | NodesIteratorClass(const GlobalGraph &gg, GlobalGraph::NodeId node) : NeighborIteratorClass(gg.nodeStructure_.find(node)->second.second) {} | ^ @@ -570,61 +631,6 @@ 907 | ~EdgesIteratorClass(){} | ^ /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:907:3: note: remove the '< >' -/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:923:60: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 923 | EdgesIteratorClass(const GlobalGraph &gg, GlobalGraph::NodeId node) : NeighborIteratorClass(gg.nodeStructure_.find(node)->second.first) {} - | ^ -/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:923:60: note: remove the '< >' -/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:925:61: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 925 | EdgesIteratorClass(GlobalGraph & gg, GlobalGraph::NodeId node) : NeighborIteratorClass(gg.nodeStructure_.find(node)->second.first) {} - | ^~~~~~~~~~~ -/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:925:61: note: remove the '< >' -/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:927:3: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] - 927 | ~EdgesIteratorClass(){} - | ^ -/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:927:3: note: remove the '< >' -/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:942:60: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 942 | EdgesIteratorClass(const GlobalGraph &gg, GlobalGraph::NodeId node) : NeighborIteratorClass(gg.nodeStructure_.find(node)->second.second) {} - | ^ -/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:942:60: note: remove the '< >' -/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:944:61: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 944 | EdgesIteratorClass(GlobalGraph & gg, GlobalGraph::NodeId node) : NeighborIteratorClass(gg.nodeStructure_.find(node)->second.second) {} - | ^~~~~~~~~~~ -/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:944:61: note: remove the '< >' -/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:946:3: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] - 946 | ~EdgesIteratorClass(){} - | ^ -/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:946:3: note: remove the '< >' -[ 4%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/App/NumCalcApplicationTools.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/App/NumCalcApplicationTools.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/App/NumCalcApplicationTools.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/App/NumCalcApplicationTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/App/NumCalcApplicationTools.cpp -[ 4%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/Fig/XFigGraphicDevice.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/Fig/XFigGraphicDevice.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/Fig/XFigGraphicDevice.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/Fig/XFigGraphicDevice.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graphics/Fig/XFigGraphicDevice.cpp -[ 4%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/BppString.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/BppString.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/BppString.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/BppString.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/BppString.cpp -[ 5%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Exceptions.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Exceptions.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Exceptions.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Exceptions.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Exceptions.cpp -[ 6%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/Fig/XFigLaTeXFontManager.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/Fig/XFigLaTeXFontManager.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/Fig/XFigLaTeXFontManager.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/Fig/XFigLaTeXFontManager.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graphics/Fig/XFigLaTeXFontManager.cpp -[ 6%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/Fig/XFigPostscriptFontManager.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/Fig/XFigPostscriptFontManager.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/Fig/XFigPostscriptFontManager.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/Fig/XFigPostscriptFontManager.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graphics/Fig/XFigPostscriptFontManager.cpp -[ 6%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Graph/GlobalGraph.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Graph/GlobalGraph.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Graph/GlobalGraph.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Graph/GlobalGraph.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.cpp -In file included from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.cpp:49: -/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:751:3: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] - 751 | ~NodesIteratorClass(){} - | ^ -/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:751:3: note: remove the '< >' -/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:768:52: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 768 | NodesIteratorClass(const GlobalGraph &gg, typename std::enable_if::type * = 0) : it_(gg.nodeStructure_.begin()), - | ^ -/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:768:52: note: remove the '< >' -/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:773:53: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 773 | NodesIteratorClass(GlobalGraph & gg, typename std::enable_if::type * = 0) : it_(gg.nodeStructure_.begin()), - | ^~~~~~~~~~~ -/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:773:53: note: remove the '< >' -/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:777:3: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] - 777 | ~NodesIteratorClass(){} - | ^ -/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:777:3: note: remove the '< >' /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:809:11: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 809 | virtual ~NeighborIteratorClass(){} | ^ @@ -633,10 +639,17 @@ 812 | NeighborIteratorClass(const std::map &map, typename std::enable_if::type * = 0) : | ^ /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:812:34: note: remove the '< >' +/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:923:60: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 923 | EdgesIteratorClass(const GlobalGraph &gg, GlobalGraph::NodeId node) : NeighborIteratorClass(gg.nodeStructure_.find(node)->second.first) {} + | ^ /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:819:40: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 819 | NeighborIteratorClass(std::map &map, typename std::enable_if::type * = 0) : | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:819:40: note: remove the '< >' +/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:923:60: note: remove the '< >' +/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:925:61: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 925 | EdgesIteratorClass(GlobalGraph & gg, GlobalGraph::NodeId node) : NeighborIteratorClass(gg.nodeStructure_.find(node)->second.first) {} + | ^~~~~~~~~~~ /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:842:60: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 842 | NodesIteratorClass(const GlobalGraph &gg, GlobalGraph::NodeId node) : NeighborIteratorClass(gg.nodeStructure_.find(node)->second.first) {} | ^ @@ -649,6 +662,23 @@ 846 | ~NodesIteratorClass(){} | ^ /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:846:3: note: remove the '< >' +/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:925:61: note: remove the '< >' +/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:927:3: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] + 927 | ~EdgesIteratorClass(){} + | ^ +/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:927:3: note: remove the '< >' +/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:942:60: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 942 | EdgesIteratorClass(const GlobalGraph &gg, GlobalGraph::NodeId node) : NeighborIteratorClass(gg.nodeStructure_.find(node)->second.second) {} + | ^ +/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:942:60: note: remove the '< >' +/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:944:61: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 944 | EdgesIteratorClass(GlobalGraph & gg, GlobalGraph::NodeId node) : NeighborIteratorClass(gg.nodeStructure_.find(node)->second.second) {} + | ^~~~~~~~~~~ +/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:944:61: note: remove the '< >' +/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:946:3: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] + 946 | ~EdgesIteratorClass(){} + | ^ +/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:946:3: note: remove the '< >' /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:862:60: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 862 | NodesIteratorClass(const GlobalGraph &gg, GlobalGraph::NodeId node) : NeighborIteratorClass(gg.nodeStructure_.find(node)->second.second) {} | ^ @@ -697,104 +727,98 @@ 946 | ~EdgesIteratorClass(){} | ^ /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graph/GlobalGraph.h:946:3: note: remove the '< >' -[ 7%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/Font/Font.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/Font/Font.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/Font/Font.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/Font/Font.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graphics/Font/Font.cpp -[ 7%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/GraphicDevice.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/GraphicDevice.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/GraphicDevice.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/GraphicDevice.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graphics/GraphicDevice.cpp -[ 8%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/Latex/DvipsColorSet.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/Latex/DvipsColorSet.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/Latex/DvipsColorSet.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/Latex/DvipsColorSet.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graphics/Latex/DvipsColorSet.cpp -[ 8%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/Latex/PgfGraphicDevice.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/Latex/PgfGraphicDevice.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/Latex/PgfGraphicDevice.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/Latex/PgfGraphicDevice.cpp.o -c 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src/CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/Molscript/MolscriptColorSet.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/Molscript/MolscriptColorSet.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/Molscript/MolscriptColorSet.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/Molscript/MolscriptColorSet.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graphics/Molscript/MolscriptColorSet.cpp -[ 10%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Graphics/Fig/XFigGraphicDevice.cpp.o +[ 6%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/ColorTools.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/ColorTools.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/ColorTools.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Graphics/ColorTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graphics/ColorTools.cpp +[ 6%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Graphics/Fig/XFigGraphicDevice.cpp.o cd 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src/CMakeFiles/bpp-core-static.dir/Bpp/Graphics/Svg/SvgGraphicDevice.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Graphics/Svg/SvgGraphicDevice.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Graphics/Svg/SvgGraphicDevice.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Graphics/Svg/SvgGraphicDevice.cpp -[ 15%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Io/BppODiscreteDistributionFormat.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Io/BppODiscreteDistributionFormat.cpp.o -MF 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src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/Operators/ComputationTree.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/Operators/ComputationTree.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/Operators/ComputationTree.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/Operators/ComputationTree.cpp +[ 27%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/OptimizationStopCondition.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/OptimizationStopCondition.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/OptimizationStopCondition.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/OptimizationStopCondition.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/OptimizationStopCondition.cpp In file included from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/Operators/../../../Graph/TreeGraphImpl.h:50, from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/Operators/../../../Graph/AssociationTreeGraphImplObserver.h:43, from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/Operators/ComputationTree.h:43, @@ -928,44 +952,54 @@ 1144 | ~EdgeIteratorClass() {} | ^ /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/Operators/../../../Graph/AssociationGraphImplObserver.h:1144:5: note: remove the '< >' -[ 30%] Building CXX object 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src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp -[ 38%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp.o -cd 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-Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/AutoCorrelationTransitionMatrix.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/AutoCorrelationTransitionMatrix.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/AutoCorrelationTransitionMatrix.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/AutoCorrelationTransitionMatrix.cpp +[ 34%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/DataTable.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/DataTable.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/DataTable.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/DataTable.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/DataTable.cpp +[ 34%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/AbstractOptimizer.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/AbstractOptimizer.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/AbstractOptimizer.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/AbstractOptimizer.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/AbstractOptimizer.cpp +[ 35%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/FullHmmTransitionMatrix.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/FullHmmTransitionMatrix.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/FullHmmTransitionMatrix.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/FullHmmTransitionMatrix.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/FullHmmTransitionMatrix.cpp +[ 36%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/BfgsMultiDimensions.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/BfgsMultiDimensions.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/BfgsMultiDimensions.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/BfgsMultiDimensions.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/BfgsMultiDimensions.cpp +[ 36%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/HmmLikelihood.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/HmmLikelihood.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/HmmLikelihood.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/HmmLikelihood.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/HmmLikelihood.cpp +[ 37%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp +[ 37%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp +[ 37%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/BrentOneDimension.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/BrentOneDimension.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/BrentOneDimension.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/BrentOneDimension.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/BrentOneDimension.cpp +[ 38%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/ConjugateGradientMultiDimensions.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/ConjugateGradientMultiDimensions.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/ConjugateGradientMultiDimensions.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/ConjugateGradientMultiDimensions.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/ConjugateGradientMultiDimensions.cpp In file included from /usr/include/c++/14/bits/stl_algo.h:61, from /usr/include/c++/14/algorithm:61, from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/../VectorTools.h:54, @@ -989,8 +1023,6 @@ /usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 38%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/DownhillSimplexMethod.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/DownhillSimplexMethod.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/DownhillSimplexMethod.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/DownhillSimplexMethod.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/DownhillSimplexMethod.cpp In file included from /usr/include/c++/14/bits/stl_algo.h:61, from /usr/include/c++/14/algorithm:61, from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/../VectorTools.h:54, @@ -1014,9 +1046,9 @@ /usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', - inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]' at /usr/include/c++/14/bits/stl_algo.h:4772:18, - inlined from 'void bpp::LogsumHmmLikelihood::computeForward_()' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:219:7: +In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = greater]' at /usr/include/c++/14/bits/stl_algo.h:4805:18, + inlined from 'void bpp::LowMemoryRescaledHmmLikelihood::computeForward_()' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp:237:11: /usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ @@ -1024,19 +1056,19 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/14/bits/stl_algo.h:1908:31, - inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]' at /usr/include/c++/14/bits/stl_algo.h:4772:18, - inlined from 'void bpp::LogsumHmmLikelihood::computeForward_()' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:219:7: +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/14/bits/stl_algo.h:1908:31, + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = greater]' at /usr/include/c++/14/bits/stl_algo.h:4805:18, + inlined from 'void bpp::LowMemoryRescaledHmmLikelihood::computeForward_()' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp:237:11: /usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', - inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]' at /usr/include/c++/14/bits/stl_algo.h:4772:18, - inlined from 'void bpp::LogsumHmmLikelihood::computeForward_()' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:219:7: +In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = greater]' at /usr/include/c++/14/bits/stl_algo.h:4805:18, + inlined from 'void bpp::LowMemoryRescaledHmmLikelihood::computeForward_()' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp:246:7: /usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ @@ -1044,16 +1076,19 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/14/bits/stl_algo.h:1908:31, - inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]' at /usr/include/c++/14/bits/stl_algo.h:4772:18, - inlined from 'void bpp::LogsumHmmLikelihood::computeForward_()' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:219:7: +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/14/bits/stl_algo.h:1908:31, + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = greater]' at /usr/include/c++/14/bits/stl_algo.h:4805:18, + inlined from 'void bpp::LowMemoryRescaledHmmLikelihood::computeForward_()' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp:246:7: +/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 + 1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = greater]' at /usr/include/c++/14/bits/stl_algo.h:4805:18, - inlined from 'void bpp::LowMemoryRescaledHmmLikelihood::computeForward_()' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp:237:11: +In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', + inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]' at /usr/include/c++/14/bits/stl_algo.h:4772:18, + inlined from 'void bpp::LogsumHmmLikelihood::computeForward_()' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:219:7: /usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ @@ -1061,19 +1096,19 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/14/bits/stl_algo.h:1908:31, - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = greater]' at /usr/include/c++/14/bits/stl_algo.h:4805:18, - inlined from 'void bpp::LowMemoryRescaledHmmLikelihood::computeForward_()' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp:237:11: +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/14/bits/stl_algo.h:1908:31, + inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]' at /usr/include/c++/14/bits/stl_algo.h:4772:18, + inlined from 'void bpp::LogsumHmmLikelihood::computeForward_()' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:219:7: /usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = greater]' at /usr/include/c++/14/bits/stl_algo.h:4805:18, - inlined from 'void bpp::LowMemoryRescaledHmmLikelihood::computeForward_()' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp:246:7: +In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', + inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]' at /usr/include/c++/14/bits/stl_algo.h:4772:18, + inlined from 'void bpp::LogsumHmmLikelihood::computeForward_()' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:219:7: /usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ @@ -1081,16 +1116,19 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/14/bits/stl_algo.h:1908:31, - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = greater]' at /usr/include/c++/14/bits/stl_algo.h:4805:18, - inlined from 'void bpp::LowMemoryRescaledHmmLikelihood::computeForward_()' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp:246:7: -/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/14/bits/stl_algo.h:1908:31, + inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]' at /usr/include/c++/14/bits/stl_algo.h:4772:18, + inlined from 'void bpp::LogsumHmmLikelihood::computeForward_()' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:219:7: /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +[ 38%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/DirectionFunction.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/DirectionFunction.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/DirectionFunction.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/DirectionFunction.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/DirectionFunction.cpp +[ 39%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp +[ 40%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/DownhillSimplexMethod.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/DownhillSimplexMethod.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/DownhillSimplexMethod.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/DownhillSimplexMethod.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/DownhillSimplexMethod.cpp In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]' at /usr/include/c++/14/bits/stl_algo.h:4772:18, inlined from 'void bpp::LogsumHmmLikelihood::computeD2Forward_() const' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:571:7: @@ -1128,8 +1166,6 @@ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 39%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]' at /usr/include/c++/14/bits/stl_algo.h:4772:18, inlined from 'void bpp::LogsumHmmLikelihood::computeDForward_() const' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:463:7: @@ -1167,10 +1203,10 @@ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 40%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/FivePointsNumericalDerivative.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/FivePointsNumericalDerivative.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/FivePointsNumericalDerivative.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/FivePointsNumericalDerivative.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/FivePointsNumericalDerivative.cpp -[ 40%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/NumTools.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/NumTools.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/NumTools.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/NumTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/NumTools.cpp +[ 40%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/NumTools.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/NumTools.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/NumTools.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/NumTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/NumTools.cpp +[ 40%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/FivePointsNumericalDerivative.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/FivePointsNumericalDerivative.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/FivePointsNumericalDerivative.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/FivePointsNumericalDerivative.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/FivePointsNumericalDerivative.cpp In file included from /usr/include/c++/14/bits/stl_algo.h:61, from /usr/include/c++/14/algorithm:61, from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/../VectorTools.h:54, @@ -1186,8 +1222,10 @@ 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 -[ 41%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Parameter.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Parameter.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Parameter.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Parameter.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Parameter.cpp +[ 41%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/FunctionTools.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/FunctionTools.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/FunctionTools.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/FunctionTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/FunctionTools.cpp +[ 42%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Parameter.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Parameter.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Parameter.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Parameter.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Parameter.cpp /usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1876 | __introsort_loop(_RandomAccessIterator __first, @@ -1216,8 +1254,6 @@ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 41%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/FunctionTools.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/FunctionTools.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/FunctionTools.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/FunctionTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/FunctionTools.cpp In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = greater]' at /usr/include/c++/14/bits/stl_algo.h:4805:18, inlined from 'void bpp::RescaledHmmLikelihood::computeDForward_() const' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp:472:7: @@ -1258,26 +1294,30 @@ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 42%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/GoldenSectionSearch.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/GoldenSectionSearch.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/GoldenSectionSearch.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/GoldenSectionSearch.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/GoldenSectionSearch.cpp -[ 42%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/ParameterExceptions.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/ParameterExceptions.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/ParameterExceptions.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/ParameterExceptions.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/ParameterExceptions.cpp -[ 42%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/MetaOptimizer.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/MetaOptimizer.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/MetaOptimizer.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/MetaOptimizer.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/MetaOptimizer.cpp -[ 43%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/ParameterList.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/ParameterList.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/ParameterList.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/ParameterList.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/ParameterList.cpp -[ 44%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/NewtonBacktrackOneDimension.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/NewtonBacktrackOneDimension.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/NewtonBacktrackOneDimension.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/NewtonBacktrackOneDimension.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/NewtonBacktrackOneDimension.cpp -[ 44%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/NewtonOneDimension.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/NewtonOneDimension.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/NewtonOneDimension.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/NewtonOneDimension.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/NewtonOneDimension.cpp -[ 45%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/OneDimensionOptimizationTools.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/OneDimensionOptimizationTools.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/OneDimensionOptimizationTools.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/OneDimensionOptimizationTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/OneDimensionOptimizationTools.cpp -[ 45%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/AbstractDiscreteDistribution.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/AbstractDiscreteDistribution.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/AbstractDiscreteDistribution.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/AbstractDiscreteDistribution.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.cpp -[ 45%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/Operators/ComputationTree.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/Operators/ComputationTree.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/Operators/ComputationTree.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/Operators/ComputationTree.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/Operators/ComputationTree.cpp -[ 46%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/OptimizationStopCondition.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/OptimizationStopCondition.cpp.o -MF 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CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/GoldenSectionSearch.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/GoldenSectionSearch.cpp +[ 42%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/MetaOptimizer.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/MetaOptimizer.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/MetaOptimizer.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/MetaOptimizer.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/MetaOptimizer.cpp +[ 42%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/ParameterExceptions.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/ParameterExceptions.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/ParameterExceptions.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/ParameterExceptions.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/ParameterExceptions.cpp +[ 43%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/ParameterList.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/ParameterList.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/ParameterList.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/ParameterList.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/ParameterList.cpp +[ 43%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/AbstractDiscreteDistribution.cpp.o +cd 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/usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/NewtonOneDimension.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/NewtonOneDimension.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/NewtonOneDimension.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/NewtonOneDimension.cpp +[ 45%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/OneDimensionOptimizationTools.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 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-Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/OptimizationStopCondition.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/OptimizationStopCondition.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/OptimizationStopCondition.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/OptimizationStopCondition.cpp In file included from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/Operators/../../../Graph/TreeGraphImpl.h:50, from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/Operators/../../../Graph/AssociationTreeGraphImplObserver.h:43, from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/Operators/ComputationTree.h:43, @@ -1411,14 +1451,6 @@ 1144 | ~EdgeIteratorClass() {} | ^ /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/Operators/../../../Graph/AssociationGraphImplObserver.h:1144:5: note: remove the '< >' -[ 46%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/PowellMultiDimensions.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/PowellMultiDimensions.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/PowellMultiDimensions.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/PowellMultiDimensions.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/PowellMultiDimensions.cpp -[ 47%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/BetaDiscreteDistribution.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/BetaDiscreteDistribution.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/BetaDiscreteDistribution.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/BetaDiscreteDistribution.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/BetaDiscreteDistribution.cpp -[ 48%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/ReparametrizationFunctionWrapper.cpp.o -cd 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/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/ConstantDistribution.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/ConstantDistribution.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/ConstantDistribution.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/ConstantDistribution.cpp In file included from /usr/include/c++/14/map:62, from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/../Function/../AbstractParametrizable.h:47, from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/../Function/Functions.h:45, @@ -1432,6 +1464,10 @@ /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, bpp::AbstractDiscreteDistribution::Order, std::allocator > >::const_iterator' changed in GCC 7.1 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 47%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/DirichletDiscreteDistribution.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/DirichletDiscreteDistribution.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/DirichletDiscreteDistribution.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/DirichletDiscreteDistribution.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/DirichletDiscreteDistribution.cpp +[ 47%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/PowellMultiDimensions.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/PowellMultiDimensions.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/PowellMultiDimensions.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/PowellMultiDimensions.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/PowellMultiDimensions.cpp In file included from /usr/include/c++/14/map:63: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = double; _Tp = double; _Compare = bpp::AbstractDiscreteDistribution::Order; _Alloc = std::allocator >]', inlined from 'bpp::ConstantDistribution::ConstantDistribution(double)' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/ConstantDistribution.cpp:55:23: @@ -1460,30 +1496,30 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -[ 48%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/SimpleMultiDimensions.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/SimpleMultiDimensions.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/SimpleMultiDimensions.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/SimpleMultiDimensions.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/SimpleMultiDimensions.cpp -[ 49%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/DirichletDiscreteDistribution.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/DirichletDiscreteDistribution.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/DirichletDiscreteDistribution.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/DirichletDiscreteDistribution.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/DirichletDiscreteDistribution.cpp -[ 50%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/SimpleNewtonMultiDimensions.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/SimpleNewtonMultiDimensions.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/SimpleNewtonMultiDimensions.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/SimpleNewtonMultiDimensions.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/SimpleNewtonMultiDimensions.cpp -[ 50%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/ThreePointsNumericalDerivative.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/ThreePointsNumericalDerivative.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/ThreePointsNumericalDerivative.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/ThreePointsNumericalDerivative.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/ThreePointsNumericalDerivative.cpp -[ 50%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/TwoPointsNumericalDerivative.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/TwoPointsNumericalDerivative.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/TwoPointsNumericalDerivative.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/TwoPointsNumericalDerivative.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/TwoPointsNumericalDerivative.cpp -[ 50%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/ExponentialDiscreteDistribution.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/ExponentialDiscreteDistribution.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/ExponentialDiscreteDistribution.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/ExponentialDiscreteDistribution.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/ExponentialDiscreteDistribution.cpp -[ 51%] Building CXX object 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src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/TwoPointsNumericalDerivative.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/TwoPointsNumericalDerivative.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Function/TwoPointsNumericalDerivative.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/TwoPointsNumericalDerivative.cpp +[ 52%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/InvariantMixedDiscreteDistribution.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/InvariantMixedDiscreteDistribution.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/InvariantMixedDiscreteDistribution.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/InvariantMixedDiscreteDistribution.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/InvariantMixedDiscreteDistribution.cpp +[ 52%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/AbstractHmmTransitionMatrix.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/AbstractHmmTransitionMatrix.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/AbstractHmmTransitionMatrix.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/AbstractHmmTransitionMatrix.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/AbstractHmmTransitionMatrix.cpp +[ 53%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/AutoCorrelationTransitionMatrix.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/AutoCorrelationTransitionMatrix.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/AutoCorrelationTransitionMatrix.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/AutoCorrelationTransitionMatrix.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/AutoCorrelationTransitionMatrix.cpp +[ 53%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/FullHmmTransitionMatrix.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/FullHmmTransitionMatrix.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/FullHmmTransitionMatrix.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/FullHmmTransitionMatrix.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/FullHmmTransitionMatrix.cpp In file included from /usr/include/c++/14/map:62, from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/../Function/../AbstractParametrizable.h:47, from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/../Function/Functions.h:45, @@ -1497,19 +1533,6 @@ /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, bpp::AbstractDiscreteDistribution::Order, std::allocator > >::const_iterator' changed in GCC 7.1 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/14/map:62, - from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/../Function/../AbstractParametrizable.h:47, - from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/../Function/Functions.h:45, - from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/../NumTools.h:43, - from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/../VectorTools.h:44, - from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/DiscreteDistribution.h:43, - from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43, - from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/MixtureOfDiscreteDistributions.h:43, - from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/MixtureOfDiscreteDistributions.cpp:40: -/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = double; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = bpp::AbstractDiscreteDistribution::Order; _Alloc = std::allocator >]': -/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, bpp::AbstractDiscreteDistribution::Order, std::allocator > >::const_iterator' changed in GCC 7.1 - 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/map:63: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = double; _Tp = double; _Compare = bpp::AbstractDiscreteDistribution::Order; _Alloc = std::allocator >]', inlined from 'void bpp::InvariantMixedDiscreteDistribution::updateDistribution()' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/InvariantMixedDiscreteDistribution.cpp:87:27: @@ -1538,6 +1561,27 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ +[ 53%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/HmmLikelihood.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/HmmLikelihood.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/HmmLikelihood.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/HmmLikelihood.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/HmmLikelihood.cpp +[ 54%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/MixtureOfDiscreteDistributions.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/MixtureOfDiscreteDistributions.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/MixtureOfDiscreteDistributions.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/MixtureOfDiscreteDistributions.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/MixtureOfDiscreteDistributions.cpp +[ 55%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp +[ 55%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp +In file included from /usr/include/c++/14/map:62, + from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/../Function/../AbstractParametrizable.h:47, + from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/../Function/Functions.h:45, + from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/../NumTools.h:43, + from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/../VectorTools.h:44, + from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/DiscreteDistribution.h:43, + from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43, + from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/MixtureOfDiscreteDistributions.h:43, + from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/MixtureOfDiscreteDistributions.cpp:40: +/usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = double; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = bpp::AbstractDiscreteDistribution::Order; _Alloc = std::allocator >]': +/usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, bpp::AbstractDiscreteDistribution::Order, std::allocator > >::const_iterator' changed in GCC 7.1 + 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/map:63: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = double; _Tp = double; _Compare = bpp::AbstractDiscreteDistribution::Order; _Alloc = std::allocator >]', inlined from 'void bpp::MixtureOfDiscreteDistributions::updateDistribution()' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/MixtureOfDiscreteDistributions.cpp:194:30: @@ -1557,20 +1601,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -[ 53%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/SimpleDiscreteDistribution.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/SimpleDiscreteDistribution.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/SimpleDiscreteDistribution.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/SimpleDiscreteDistribution.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/SimpleDiscreteDistribution.cpp -[ 54%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/FullHmmTransitionMatrix.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/FullHmmTransitionMatrix.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/FullHmmTransitionMatrix.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/FullHmmTransitionMatrix.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/FullHmmTransitionMatrix.cpp -[ 55%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/Simplex.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/Simplex.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/Simplex.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/Simplex.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/Simplex.cpp -[ 55%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/HmmLikelihood.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/HmmLikelihood.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/HmmLikelihood.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/HmmLikelihood.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/HmmLikelihood.cpp -[ 55%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/TruncatedExponentialDiscreteDistribution.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/TruncatedExponentialDiscreteDistribution.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/TruncatedExponentialDiscreteDistribution.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/TruncatedExponentialDiscreteDistribution.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/TruncatedExponentialDiscreteDistribution.cpp -[ 56%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp -[ 57%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/UniformDiscreteDistribution.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/UniformDiscreteDistribution.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/UniformDiscreteDistribution.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/UniformDiscreteDistribution.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/UniformDiscreteDistribution.cpp In file included from /usr/include/c++/14/bits/stl_algo.h:61, from /usr/include/c++/14/algorithm:61, from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/../VectorTools.h:54, @@ -1581,6 +1611,8 @@ /usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ +[ 56%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp /usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, @@ -1594,10 +1626,21 @@ /usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 57%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/ContingencyTableGenerator.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/ContingencyTableGenerator.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/ContingencyTableGenerator.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/ContingencyTableGenerator.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Random/ContingencyTableGenerator.cpp -[ 58%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/RandomTools.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/RandomTools.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/RandomTools.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/RandomTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Random/RandomTools.cpp +In file included from /usr/include/c++/14/bits/stl_algo.h:61, + from /usr/include/c++/14/algorithm:61, + from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/../VectorTools.h:54, + from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/HmmLikelihood.h:46, + from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:43, + from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp:40: +/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': +/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 + 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + | ^~~~~~~~~~~~~ +/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': +/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 + 1770 | __insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]' at /usr/include/c++/14/bits/stl_algo.h:4772:18, inlined from 'void bpp::LogsumHmmLikelihood::computeForward_()' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:219:7: @@ -1635,12 +1678,19 @@ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Random/RandomTools.cpp:50:68: warning: conversion from 'time_t' {aka 'long long int'} to 'long int' may change value [-Wconversion] - 50 | RandomFactory* RandomTools::DEFAULT_GENERATOR = new Uniform01K(time(NULL)); - | ~~~~^~~~~~ -In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', - inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]' at /usr/include/c++/14/bits/stl_algo.h:4772:18, - inlined from 'void bpp::LogsumHmmLikelihood::computeD2Forward_() const' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:571:7: +[ 56%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/SimpleDiscreteDistribution.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/SimpleDiscreteDistribution.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/SimpleDiscreteDistribution.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/SimpleDiscreteDistribution.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/SimpleDiscreteDistribution.cpp +/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': +/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 + 1876 | __introsort_loop(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 +/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 + 1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = greater]' at /usr/include/c++/14/bits/stl_algo.h:4805:18, + inlined from 'void bpp::LowMemoryRescaledHmmLikelihood::computeForward_()' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp:237:11: /usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ @@ -1648,19 +1698,19 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/14/bits/stl_algo.h:1908:31, - inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]' at /usr/include/c++/14/bits/stl_algo.h:4772:18, - inlined from 'void bpp::LogsumHmmLikelihood::computeD2Forward_() const' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:571:7: +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/14/bits/stl_algo.h:1908:31, + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = greater]' at /usr/include/c++/14/bits/stl_algo.h:4805:18, + inlined from 'void bpp::LowMemoryRescaledHmmLikelihood::computeForward_()' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp:237:11: /usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', - inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]' at /usr/include/c++/14/bits/stl_algo.h:4772:18, - inlined from 'void bpp::LogsumHmmLikelihood::computeD2Forward_() const' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:571:7: +In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = greater]' at /usr/include/c++/14/bits/stl_algo.h:4805:18, + inlined from 'void bpp::LowMemoryRescaledHmmLikelihood::computeForward_()' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp:246:7: /usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ @@ -1668,16 +1718,34 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/14/bits/stl_algo.h:1908:31, - inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]' at /usr/include/c++/14/bits/stl_algo.h:4772:18, - inlined from 'void bpp::LogsumHmmLikelihood::computeD2Forward_() const' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:571:7: +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/14/bits/stl_algo.h:1908:31, + inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = greater]' at /usr/include/c++/14/bits/stl_algo.h:4805:18, + inlined from 'void bpp::LowMemoryRescaledHmmLikelihood::computeForward_()' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp:246:7: +/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 + 1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/14/bits/stl_algo.h:61, + from /usr/include/c++/14/algorithm:61, + from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/../VectorTools.h:54, + from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/HmmLikelihood.h:46, + from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:43, + from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp:40: +/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': +/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 + 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + | ^~~~~~~~~~~~~ +/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': +/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 + 1770 | __insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]' at /usr/include/c++/14/bits/stl_algo.h:4772:18, - inlined from 'void bpp::LogsumHmmLikelihood::computeDForward_() const' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:463:7: + inlined from 'void bpp::LogsumHmmLikelihood::computeD2Forward_() const' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:571:7: /usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ @@ -1688,7 +1756,7 @@ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/14/bits/stl_algo.h:1908:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]' at /usr/include/c++/14/bits/stl_algo.h:4772:18, - inlined from 'void bpp::LogsumHmmLikelihood::computeDForward_() const' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:463:7: + inlined from 'void bpp::LogsumHmmLikelihood::computeD2Forward_() const' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:571:7: /usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1697,7 +1765,7 @@ | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]' at /usr/include/c++/14/bits/stl_algo.h:4772:18, - inlined from 'void bpp::LogsumHmmLikelihood::computeDForward_() const' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:463:7: + inlined from 'void bpp::LogsumHmmLikelihood::computeD2Forward_() const' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:571:7: /usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ @@ -1708,48 +1776,13 @@ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/14/bits/stl_algo.h:1908:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]' at /usr/include/c++/14/bits/stl_algo.h:4772:18, - inlined from 'void bpp::LogsumHmmLikelihood::computeDForward_() const' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:463:7: + inlined from 'void bpp::LogsumHmmLikelihood::computeD2Forward_() const' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:571:7: /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 58%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/Uniform01K.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/Uniform01K.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/Uniform01K.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/Uniform01K.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Random/Uniform01K.cpp -[ 59%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/Uniform01QD.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/Uniform01QD.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/Uniform01QD.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/Uniform01QD.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Random/Uniform01QD.cpp -[ 59%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/Uniform01WH.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/Uniform01WH.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/Uniform01WH.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/Uniform01WH.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Random/Uniform01WH.cpp -[ 59%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp -[ 60%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/ContingencyTableTest.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/ContingencyTableTest.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/ContingencyTableTest.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/ContingencyTableTest.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Stat/ContingencyTableTest.cpp -[ 60%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/Mva/CorrespondenceAnalysis.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/Mva/CorrespondenceAnalysis.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/Mva/CorrespondenceAnalysis.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/Mva/CorrespondenceAnalysis.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Stat/Mva/CorrespondenceAnalysis.cpp -In file included from /usr/include/c++/14/bits/stl_algo.h:61, - from /usr/include/c++/14/algorithm:61, - from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/../VectorTools.h:54, - from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/HmmLikelihood.h:46, - from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h:43, - from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp:40: -/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': -/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - | ^~~~~~~~~~~~~ -/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': -/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 1770 | __insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 -/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': -/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 1876 | __introsort_loop(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 -/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = greater]' at /usr/include/c++/14/bits/stl_algo.h:4805:18, - inlined from 'void bpp::LowMemoryRescaledHmmLikelihood::computeForward_()' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp:237:11: +In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', + inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]' at /usr/include/c++/14/bits/stl_algo.h:4772:18, + inlined from 'void bpp::LogsumHmmLikelihood::computeDForward_() const' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:463:7: /usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ @@ -1757,19 +1790,19 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/14/bits/stl_algo.h:1908:31, - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = greater]' at /usr/include/c++/14/bits/stl_algo.h:4805:18, - inlined from 'void bpp::LowMemoryRescaledHmmLikelihood::computeForward_()' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp:237:11: +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/14/bits/stl_algo.h:1908:31, + inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]' at /usr/include/c++/14/bits/stl_algo.h:4772:18, + inlined from 'void bpp::LogsumHmmLikelihood::computeDForward_() const' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:463:7: /usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = greater]' at /usr/include/c++/14/bits/stl_algo.h:4805:18, - inlined from 'void bpp::LowMemoryRescaledHmmLikelihood::computeForward_()' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp:246:7: +In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', + inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]' at /usr/include/c++/14/bits/stl_algo.h:4772:18, + inlined from 'void bpp::LogsumHmmLikelihood::computeDForward_() const' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:463:7: /usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ @@ -1777,85 +1810,15 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/14/bits/stl_algo.h:1908:31, - inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = greater]' at /usr/include/c++/14/bits/stl_algo.h:4805:18, - inlined from 'void bpp::LowMemoryRescaledHmmLikelihood::computeForward_()' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp:246:7: -/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/14/bits/stl_algo.h:1908:31, + inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]' at /usr/include/c++/14/bits/stl_algo.h:4772:18, + inlined from 'void bpp::LogsumHmmLikelihood::computeDForward_() const' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp:463:7: /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 61%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/Mva/DualityDiagram.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/Mva/DualityDiagram.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/Mva/DualityDiagram.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/Mva/DualityDiagram.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Stat/Mva/DualityDiagram.cpp -[ 62%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp -[ 62%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/Mva/PrincipalComponentAnalysis.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/Mva/PrincipalComponentAnalysis.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/Mva/PrincipalComponentAnalysis.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/Mva/PrincipalComponentAnalysis.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Stat/Mva/PrincipalComponentAnalysis.cpp -In file included from /usr/include/c++/14/bits/stl_algo.h:61, - from /usr/include/c++/14/algorithm:61, - from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/../VectorTools.h:54, - from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/HmmLikelihood.h:46, - from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h:43, - from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp:40: -/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': -/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - | ^~~~~~~~~~~~~ -/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': -/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 1770 | __insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 -[ 62%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/StatTools.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/StatTools.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/StatTools.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/StatTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Stat/StatTools.cpp -In file included from /usr/include/c++/14/bits/stl_algo.h:61, - from /usr/include/c++/14/algorithm:61, - from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Stat/StatTools.cpp:43: -/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = bpp::StatTools::PValue_; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - | ^~~~~~~~~~~~~ -/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': -/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1750 | __unguarded_linear_insert(_RandomAccessIterator __last, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1770 | __insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': -/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1876 | __introsort_loop(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', - inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/14/bits/stl_algo.h:4772:18, - inlined from 'static std::vector bpp::StatTools::computeFdr(const std::vector&)' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Stat/StatTools.cpp:54:7: -/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1905 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1906 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1907 | __comp); - | ~~~~~~~ -In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', - inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/14/bits/stl_algo.h:1908:31, - inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/14/bits/stl_algo.h:4772:18, - inlined from 'static std::vector bpp::StatTools::computeFdr(const std::vector&)' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Stat/StatTools.cpp:54:7: -/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1822 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 63%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/VectorTools.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/VectorTools.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/VectorTools.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/VectorTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/VectorTools.cpp +[ 56%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/NumTools.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/NumTools.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/NumTools.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/NumTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/NumTools.cpp /usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1876 | __introsort_loop(_RandomAccessIterator __first, @@ -1864,6 +1827,8 @@ /usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 57%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Parameter.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Parameter.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Parameter.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Parameter.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Parameter.cpp In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator > >; _Compare = greater]' at /usr/include/c++/14/bits/stl_algo.h:4805:18, inlined from 'void bpp::RescaledHmmLikelihood::computeD2Forward_() const' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp:583:7: @@ -1924,39 +1889,22 @@ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 63%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/NumTools.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/NumTools.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/NumTools.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/NumTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/NumTools.cpp -[ 63%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Text/KeyvalTools.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Text/KeyvalTools.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Text/KeyvalTools.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Text/KeyvalTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Text/KeyvalTools.cpp -[ 64%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Text/NestedStringTokenizer.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Text/NestedStringTokenizer.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Text/NestedStringTokenizer.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Text/NestedStringTokenizer.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Text/NestedStringTokenizer.cpp -[ 65%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Parameter.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Parameter.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Parameter.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Parameter.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Parameter.cpp -[ 65%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Text/StringTokenizer.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Text/StringTokenizer.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Text/StringTokenizer.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Text/StringTokenizer.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Text/StringTokenizer.cpp -[ 66%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Text/TextTools.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Text/TextTools.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Text/TextTools.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Text/TextTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Text/TextTools.cpp -[ 66%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Utils/AttributesTools.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Utils/AttributesTools.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Utils/AttributesTools.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Utils/AttributesTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Utils/AttributesTools.cpp -[ 66%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/ParameterExceptions.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/ParameterExceptions.cpp.o -MF 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/BetaDiscreteDistribution.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/BetaDiscreteDistribution.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/BetaDiscreteDistribution.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/BetaDiscreteDistribution.cpp -[ 69%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/ConstantDistribution.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/ConstantDistribution.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/ConstantDistribution.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/ConstantDistribution.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/ConstantDistribution.cpp -[ 69%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/DirichletDiscreteDistribution.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/DirichletDiscreteDistribution.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/DirichletDiscreteDistribution.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/DirichletDiscreteDistribution.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/DirichletDiscreteDistribution.cpp +[ 57%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/ParameterExceptions.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/ParameterExceptions.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/ParameterExceptions.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/ParameterExceptions.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/ParameterExceptions.cpp +[ 58%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/ParameterList.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/ParameterList.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/ParameterList.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/ParameterList.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/ParameterList.cpp +[ 58%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/AbstractDiscreteDistribution.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/AbstractDiscreteDistribution.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/AbstractDiscreteDistribution.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/AbstractDiscreteDistribution.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/AbstractDiscreteDistribution.cpp +[ 59%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/Simplex.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/Simplex.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/Simplex.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/Simplex.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/Simplex.cpp +[ 59%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/TruncatedExponentialDiscreteDistribution.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/TruncatedExponentialDiscreteDistribution.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/TruncatedExponentialDiscreteDistribution.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/TruncatedExponentialDiscreteDistribution.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/TruncatedExponentialDiscreteDistribution.cpp +[ 60%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/BetaDiscreteDistribution.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/BetaDiscreteDistribution.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/BetaDiscreteDistribution.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/BetaDiscreteDistribution.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/BetaDiscreteDistribution.cpp +[ 60%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/ConstantDistribution.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/ConstantDistribution.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/ConstantDistribution.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/ConstantDistribution.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/ConstantDistribution.cpp +[ 61%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/UniformDiscreteDistribution.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/UniformDiscreteDistribution.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/UniformDiscreteDistribution.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/UniformDiscreteDistribution.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/UniformDiscreteDistribution.cpp In file included from /usr/include/c++/14/map:62, from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/../Function/../AbstractParametrizable.h:47, from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/../Function/Functions.h:45, @@ -1970,8 +1918,6 @@ /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, bpp::AbstractDiscreteDistribution::Order, std::allocator > >::const_iterator' changed in GCC 7.1 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 70%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/ExponentialDiscreteDistribution.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/ExponentialDiscreteDistribution.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/ExponentialDiscreteDistribution.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/ExponentialDiscreteDistribution.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/ExponentialDiscreteDistribution.cpp In file included from /usr/include/c++/14/map:63: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = double; _Tp = double; _Compare = bpp::AbstractDiscreteDistribution::Order; _Alloc = std::allocator >]', inlined from 'bpp::ConstantDistribution::ConstantDistribution(double)' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/ConstantDistribution.cpp:55:23: @@ -1982,6 +1928,8 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ +[ 61%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Random/ContingencyTableGenerator.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Random/ContingencyTableGenerator.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Random/ContingencyTableGenerator.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Random/ContingencyTableGenerator.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Random/ContingencyTableGenerator.cpp In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = double; _Tp = double; _Compare = bpp::AbstractDiscreteDistribution::Order; _Alloc = std::allocator >]', inlined from 'bpp::ConstantDistribution::ConstantDistribution(double)' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/ConstantDistribution.cpp:55:23: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, bpp::AbstractDiscreteDistribution::Order, std::allocator > >::const_iterator' changed in GCC 7.1 @@ -2000,14 +1948,37 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -[ 70%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/GammaDiscreteDistribution.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/GammaDiscreteDistribution.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/GammaDiscreteDistribution.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/GammaDiscreteDistribution.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/GammaDiscreteDistribution.cpp -[ 71%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/GaussianDiscreteDistribution.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/GaussianDiscreteDistribution.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/GaussianDiscreteDistribution.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/GaussianDiscreteDistribution.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/GaussianDiscreteDistribution.cpp -[ 71%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/InvariantMixedDiscreteDistribution.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 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-MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/DirichletDiscreteDistribution.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/DirichletDiscreteDistribution.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/DirichletDiscreteDistribution.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/DirichletDiscreteDistribution.cpp +[ 62%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/ExponentialDiscreteDistribution.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/ExponentialDiscreteDistribution.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/ExponentialDiscreteDistribution.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/ExponentialDiscreteDistribution.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/ExponentialDiscreteDistribution.cpp +[ 63%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Random/RandomTools.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Random/RandomTools.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Random/RandomTools.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Random/RandomTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Random/RandomTools.cpp +[ 63%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Random/Uniform01K.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Random/Uniform01K.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Random/Uniform01K.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Random/Uniform01K.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Random/Uniform01K.cpp +/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Random/RandomTools.cpp:50:68: warning: conversion from 'time_t' {aka 'long long int'} to 'long int' may change value [-Wconversion] + 50 | RandomFactory* RandomTools::DEFAULT_GENERATOR = new Uniform01K(time(NULL)); + | ~~~~^~~~~~ +[ 64%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/GammaDiscreteDistribution.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time 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src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Random/Uniform01QD.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Random/Uniform01QD.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Random/Uniform01QD.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Random/Uniform01QD.cpp +[ 65%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Random/Uniform01WH.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Random/Uniform01WH.cpp.o -MF 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CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Stat/ContingencyTableTest.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Stat/ContingencyTableTest.cpp +[ 66%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Stat/Mva/CorrespondenceAnalysis.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Stat/Mva/CorrespondenceAnalysis.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Stat/Mva/CorrespondenceAnalysis.cpp.o.d -o 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66%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/InvariantMixedDiscreteDistribution.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/InvariantMixedDiscreteDistribution.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/InvariantMixedDiscreteDistribution.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/InvariantMixedDiscreteDistribution.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/InvariantMixedDiscreteDistribution.cpp +[ 67%] Building CXX object 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src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/MixtureOfDiscreteDistributions.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/MixtureOfDiscreteDistributions.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/MixtureOfDiscreteDistributions.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/MixtureOfDiscreteDistributions.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/MixtureOfDiscreteDistributions.cpp In file included from /usr/include/c++/14/map:62, from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/../Function/../AbstractParametrizable.h:47, from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/../Function/Functions.h:45, @@ -2021,8 +1992,6 @@ /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, bpp::AbstractDiscreteDistribution::Order, std::allocator > >::const_iterator' changed in GCC 7.1 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 72%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/SimpleDiscreteDistribution.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/SimpleDiscreteDistribution.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/SimpleDiscreteDistribution.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/SimpleDiscreteDistribution.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/SimpleDiscreteDistribution.cpp In file included from /usr/include/c++/14/map:63: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = double; _Tp = double; _Compare = bpp::AbstractDiscreteDistribution::Order; _Alloc = std::allocator >]', inlined from 'void bpp::InvariantMixedDiscreteDistribution::updateDistribution()' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/InvariantMixedDiscreteDistribution.cpp:87:27: @@ -2051,8 +2020,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -[ 73%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/Simplex.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/Simplex.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/Simplex.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/Simplex.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/Simplex.cpp In file included from /usr/include/c++/14/map:62, from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/../Function/../AbstractParametrizable.h:47, from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/../Function/Functions.h:45, @@ -2085,33 +2052,10 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -[ 73%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/TruncatedExponentialDiscreteDistribution.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/TruncatedExponentialDiscreteDistribution.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/TruncatedExponentialDiscreteDistribution.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/TruncatedExponentialDiscreteDistribution.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/TruncatedExponentialDiscreteDistribution.cpp -[ 74%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/UniformDiscreteDistribution.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall 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src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Random/ContingencyTableGenerator.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Random/ContingencyTableGenerator.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Random/ContingencyTableGenerator.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Random/ContingencyTableGenerator.cpp -[ 75%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Random/RandomTools.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Random/RandomTools.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Random/RandomTools.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Random/RandomTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Random/RandomTools.cpp -/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Random/RandomTools.cpp:50:68: warning: conversion from 'time_t' {aka 'long long int'} to 'long int' may change value [-Wconversion] - 50 | RandomFactory* RandomTools::DEFAULT_GENERATOR = new Uniform01K(time(NULL)); - | ~~~~^~~~~~ -[ 75%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Random/Uniform01K.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat 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/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/SimpleDiscreteDistribution.cpp In file included from /usr/include/c++/14/bits/stl_algo.h:61, from /usr/include/c++/14/algorithm:61, from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Stat/StatTools.cpp:43: @@ -2156,47 +2100,148 @@ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 79%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/VectorTools.cpp.o +[ 69%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/VectorTools.cpp.o cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong 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src/CMakeFiles/bpp-core-shared.dir/Bpp/Text/KeyvalTools.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Text/KeyvalTools.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Text/KeyvalTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Text/KeyvalTools.cpp -[ 80%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Text/NestedStringTokenizer.cpp.o +[ 71%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Text/NestedStringTokenizer.cpp.o cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Text/NestedStringTokenizer.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Text/NestedStringTokenizer.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Text/NestedStringTokenizer.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Text/NestedStringTokenizer.cpp -[ 80%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Text/StringTokenizer.cpp.o +[ 71%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Text/StringTokenizer.cpp.o cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Text/StringTokenizer.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Text/StringTokenizer.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Text/StringTokenizer.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Text/StringTokenizer.cpp -[ 81%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Text/TextTools.cpp.o +[ 72%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Text/TextTools.cpp.o cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Text/TextTools.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Text/TextTools.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Text/TextTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Text/TextTools.cpp -[ 81%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Utils/AttributesTools.cpp.o +[ 72%] Building CXX object src/CMakeFiles/bpp-core-shared.dir/Bpp/Utils/AttributesTools.cpp.o cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_core_shared_EXPORTS -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-shared.dir/Bpp/Utils/AttributesTools.cpp.o -MF CMakeFiles/bpp-core-shared.dir/Bpp/Utils/AttributesTools.cpp.o.d -o CMakeFiles/bpp-core-shared.dir/Bpp/Utils/AttributesTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Utils/AttributesTools.cpp -[ 82%] Linking CXX shared library libbpp-core.so +[ 72%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/TruncatedExponentialDiscreteDistribution.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/TruncatedExponentialDiscreteDistribution.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/TruncatedExponentialDiscreteDistribution.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/TruncatedExponentialDiscreteDistribution.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Prob/TruncatedExponentialDiscreteDistribution.cpp +[ 73%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/UniformDiscreteDistribution.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/UniformDiscreteDistribution.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/UniformDiscreteDistribution.cpp.o.d -o 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"CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/Operators/ComputationTree.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/OptimizationStopCondition.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/PowellMultiDimensions.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/ReparametrizationFunctionWrapper.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/SimpleMultiDimensions.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/SimpleNewtonMultiDimensions.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/ThreePointsNumericalDerivative.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Function/TwoPointsNumericalDerivative.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/AbstractHmmTransitionMatrix.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/Au[ 75%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/RandomTools.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/RandomTools.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/RandomTools.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/RandomTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Random/RandomTools.cpp +[ 75%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/Uniform01K.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/Uniform01K.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/Uniform01K.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/Uniform01K.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Random/Uniform01K.cpp +[ 76%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/Uniform01QD.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/Uniform01QD.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/Uniform01QD.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/Uniform01QD.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Random/Uniform01QD.cpp +[ 76%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/Uniform01WH.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/Uniform01WH.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/Uniform01WH.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/Uniform01WH.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Random/Uniform01WH.cpp +[ 77%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/ContingencyTableTest.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/ContingencyTableTest.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/ContingencyTableTest.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/ContingencyTableTest.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Stat/ContingencyTableTest.cpp +/build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Random/RandomTools.cpp:50:68: warning: conversion from 'time_t' {aka 'long long int'} to 'long int' may change value [-Wconversion] + 50 | RandomFactory* RandomTools::DEFAULT_GENERATOR = new Uniform01K(time(NULL)); + | ~~~~^~~~~~ +[ 77%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/Mva/CorrespondenceAnalysis.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/Mva/CorrespondenceAnalysis.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/Mva/CorrespondenceAnalysis.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/Mva/CorrespondenceAnalysis.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Stat/Mva/CorrespondenceAnalysis.cpp +toCorrelationTransitionMatrix.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/FullHmmTransitionMatrix.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/HmmLikelihood.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/LogsumHmmLikelihood.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Hmm/RescaledHmmLikelihood.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/NumTools.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Parameter.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/ParameterExceptions.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/ParameterList.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/AbstractDiscreteDistribution.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/BetaDiscreteDistribution.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/ConstantDistribution.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/DirichletDiscreteDistribution.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/ExponentialDiscreteDistribution.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/GammaDiscreteDistribution.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/GaussianDiscreteDistribution.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/InvariantMixedDiscreteDistribution.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/MixtureOfDiscreteDistributions.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/SimpleDiscreteDistribution.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/Simplex.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/TruncatedExponentialDiscreteDistribution.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Prob/UniformDiscreteDistribution.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Random/ContingencyTableGenerator.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Random/RandomTools.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Random/Uniform01K.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Random/Uniform01QD.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Random/Uniform01WH.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Stat/ContingencyTableTest.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Stat/Mva/CorrespondenceAnalysis.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Stat/Mva/DualityDiagram.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Stat/Mva/PrincipalComponentAnalysis.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/Stat/StatTools.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Numeric/VectorTools.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Text/KeyvalTools.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Text/NestedStringTokenizer.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Text/StringTokenizer.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Text/TextTools.cpp.o" "CMakeFiles/bpp-core-shared.dir/Bpp/Utils/AttributesTools.cpp.o" cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_symlink_library libbpp-core.so.4.1.0 libbpp-core.so.4 libbpp-core.so make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' -[ 82%] Built target bpp-core-shared +[ 77%] Built target bpp-core-shared +[ 78%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/Mva/DualityDiagram.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/Mva/DualityDiagram.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/Mva/DualityDiagram.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/Mva/DualityDiagram.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Stat/Mva/DualityDiagram.cpp +[ 78%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/Mva/PrincipalComponentAnalysis.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/Mva/PrincipalComponentAnalysis.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/Mva/PrincipalComponentAnalysis.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/Mva/PrincipalComponentAnalysis.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Stat/Mva/PrincipalComponentAnalysis.cpp +[ 78%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/StatTools.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/StatTools.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/StatTools.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/StatTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Stat/StatTools.cpp +In file included from /usr/include/c++/14/bits/stl_algo.h:61, + from /usr/include/c++/14/algorithm:61, + from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Stat/StatTools.cpp:43: +/usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = bpp::StatTools::PValue_; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + | ^~~~~~~~~~~~~ +/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': +/usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1750 | __unguarded_linear_insert(_RandomAccessIterator __last, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1770 | __insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': +/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1876 | __introsort_loop(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', + inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/14/bits/stl_algo.h:4772:18, + inlined from 'static std::vector bpp::StatTools::computeFdr(const std::vector&)' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Stat/StatTools.cpp:54:7: +/usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1905 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1906 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1907 | __comp); + | ~~~~~~~ +In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', + inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/14/bits/stl_algo.h:1908:31, + inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/14/bits/stl_algo.h:4772:18, + inlined from 'static std::vector bpp::StatTools::computeFdr(const std::vector&)' at /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Stat/StatTools.cpp:54:7: +/usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1822 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +[ 79%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/VectorTools.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Numeric/VectorTools.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Numeric/VectorTools.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Numeric/VectorTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/VectorTools.cpp make -f test/CMakeFiles/test_bfgs.dir/build.make test/CMakeFiles/test_bfgs.dir/depend -make -f test/CMakeFiles/test_dAGraphObs.dir/build.make test/CMakeFiles/test_dAGraphObs.dir/depend -make -f test/CMakeFiles/test_derivative1.dir/build.make test/CMakeFiles/test_derivative1.dir/depend make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-core-2.4.1 /build/reproducible-path/libbpp-core-2.4.1/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/CMakeFiles/test_bfgs.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-core-2.4.1 /build/reproducible-path/libbpp-core-2.4.1/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/CMakeFiles/test_dAGraphObs.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-core-2.4.1 /build/reproducible-path/libbpp-core-2.4.1/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/CMakeFiles/test_derivative1.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' +make -f test/CMakeFiles/test_bfgs.dir/build.make test/CMakeFiles/test_bfgs.dir/build +make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' +[ 79%] Building CXX object test/CMakeFiles/test_bfgs.dir/test_bfgs.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT test/CMakeFiles/test_bfgs.dir/test_bfgs.cpp.o -MF CMakeFiles/test_bfgs.dir/test_bfgs.cpp.o.d -o CMakeFiles/test_bfgs.dir/test_bfgs.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/test/test_bfgs.cpp +[ 79%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Text/KeyvalTools.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Text/KeyvalTools.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Text/KeyvalTools.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Text/KeyvalTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Text/KeyvalTools.cpp +[ 80%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Text/NestedStringTokenizer.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Text/NestedStringTokenizer.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Text/NestedStringTokenizer.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Text/NestedStringTokenizer.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Text/NestedStringTokenizer.cpp +In file included from /usr/include/c++/14/map:62, + from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/../AbstractParametrizable.h:47, + from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/Functions.h:45, + from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/Optimizer.h:43, + from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/AbstractOptimizer.h:43, + from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/BfgsMultiDimensions.h:43, + from /build/reproducible-path/libbpp-core-2.4.1/test/test_bfgs.cpp:40: +/usr/include/c++/14/bits/stl_tree.h: In function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]': +/usr/include/c++/14/bits/stl_tree.h:2206:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 + 2206 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 80%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Text/StringTokenizer.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Text/StringTokenizer.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Text/StringTokenizer.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Text/StringTokenizer.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Text/StringTokenizer.cpp +[ 81%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Text/TextTools.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Text/TextTools.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Text/TextTools.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Text/TextTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Text/TextTools.cpp +[ 81%] Building CXX object src/CMakeFiles/bpp-core-static.dir/Bpp/Utils/AttributesTools.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-core-static.dir/Bpp/Utils/AttributesTools.cpp.o -MF CMakeFiles/bpp-core-static.dir/Bpp/Utils/AttributesTools.cpp.o.d -o CMakeFiles/bpp-core-static.dir/Bpp/Utils/AttributesTools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Utils/AttributesTools.cpp +[ 82%] Linking CXX executable test_bfgs +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_bfgs.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_bfgs.dir/link.d CMakeFiles/test_bfgs.dir/test_bfgs.cpp.o -o test_bfgs -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' +[ 82%] Built target test_bfgs +make -f test/CMakeFiles/test_dAGraphObs.dir/build.make test/CMakeFiles/test_dAGraphObs.dir/depend +make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-core-2.4.1 /build/reproducible-path/libbpp-core-2.4.1/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/CMakeFiles/test_dAGraphObs.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_dAGraphObs.dir/build.make test/CMakeFiles/test_dAGraphObs.dir/build -make -f test/CMakeFiles/test_bfgs.dir/build.make test/CMakeFiles/test_bfgs.dir/build -make -f test/CMakeFiles/test_derivative1.dir/build.make test/CMakeFiles/test_derivative1.dir/build make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' +[ 82%] Building CXX object test/CMakeFiles/test_dAGraphObs.dir/test_dAGraphObs.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT test/CMakeFiles/test_dAGraphObs.dir/test_dAGraphObs.cpp.o -MF CMakeFiles/test_dAGraphObs.dir/test_dAGraphObs.cpp.o.d -o CMakeFiles/test_dAGraphObs.dir/test_dAGraphObs.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/test/test_dAGraphObs.cpp +make -f test/CMakeFiles/test_derivative1.dir/build.make test/CMakeFiles/test_derivative1.dir/depend make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-core-2.4.1 /build/reproducible-path/libbpp-core-2.4.1/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/CMakeFiles/test_derivative1.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' +make -f test/CMakeFiles/test_derivative1.dir/build.make test/CMakeFiles/test_derivative1.dir/build make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' -[ 82%] Building CXX object test/CMakeFiles/test_dAGraphObs.dir/test_dAGraphObs.cpp.o -[ 82%] Building CXX object test/CMakeFiles/test_bfgs.dir/test_bfgs.cpp.o [ 82%] Building CXX object test/CMakeFiles/test_derivative1.dir/test_derivative1.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT test/CMakeFiles/test_bfgs.dir/test_bfgs.cpp.o -MF CMakeFiles/test_bfgs.dir/test_bfgs.cpp.o.d -o CMakeFiles/test_bfgs.dir/test_bfgs.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/test/test_bfgs.cpp -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT test/CMakeFiles/test_dAGraphObs.dir/test_dAGraphObs.cpp.o -MF CMakeFiles/test_dAGraphObs.dir/test_dAGraphObs.cpp.o.d -o CMakeFiles/test_dAGraphObs.dir/test_dAGraphObs.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/test/test_dAGraphObs.cpp cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT test/CMakeFiles/test_derivative1.dir/test_derivative1.cpp.o -MF CMakeFiles/test_derivative1.dir/test_derivative1.cpp.o.d -o CMakeFiles/test_derivative1.dir/test_derivative1.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/test/test_derivative1.cpp In file included from /build/reproducible-path/libbpp-core-2.4.1/test/../src/Bpp/Graph/DAGraphImpl.h:50, from /build/reproducible-path/libbpp-core-2.4.1/test/../src/Bpp/Graph/AssociationDAGraphImplObserver.h:43, @@ -2330,18 +2375,18 @@ 1144 | ~EdgeIteratorClass() {} | ^ /build/reproducible-path/libbpp-core-2.4.1/test/../src/Bpp/Graph/AssociationGraphImplObserver.h:1144:5: note: remove the '< >' -In file included from /usr/include/c++/14/map:62, - from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/../AbstractParametrizable.h:47, - from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/Functions.h:45, - from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/Optimizer.h:43, - from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/AbstractOptimizer.h:43, - from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/BfgsMultiDimensions.h:43, - from /build/reproducible-path/libbpp-core-2.4.1/test/test_bfgs.cpp:40: -/usr/include/c++/14/bits/stl_tree.h: In function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]': -/usr/include/c++/14/bits/stl_tree.h:2206:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 - 2206 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/14/map:62, +make -f test/CMakeFiles/test_distributions.dir/build.make test/CMakeFiles/test_distributions.dir/depend +make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-core-2.4.1 /build/reproducible-path/libbpp-core-2.4.1/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/CMakeFiles/test_distributions.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' +make -f test/CMakeFiles/test_distributions.dir/build.make test/CMakeFiles/test_distributions.dir/build +make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' +[ 82%] Building CXX object test/CMakeFiles/test_distributions.dir/test_distributions.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT test/CMakeFiles/test_distributions.dir/test_distributions.cpp.o -MF CMakeFiles/test_distributions.dir/test_distributions.cpp.o.d -o CMakeFiles/test_distributions.dir/test_distributions.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/test/test_distributions.cpp +[ 83%] Linking CXX static library libbpp-core.a +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -P CMakeFiles/bpp-core-static.dir/cmake_clean_target.cmake +cd 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>::const_iterator' changed in GCC 7.1 2206 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 83%] Linking CXX executable test_derivative1 -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_derivative1.dir/link.txt --verbose=1 -[ 84%] Linking CXX executable test_bfgs -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_bfgs.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_derivative1.dir/link.d CMakeFiles/test_derivative1.dir/test_derivative1.cpp.o -o test_derivative1 -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 -make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' -[ 84%] Built target test_derivative1 -make -f test/CMakeFiles/test_distributions.dir/build.make test/CMakeFiles/test_distributions.dir/depend -make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-core-2.4.1 /build/reproducible-path/libbpp-core-2.4.1/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/CMakeFiles/test_distributions.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' -make -f test/CMakeFiles/test_distributions.dir/build.make test/CMakeFiles/test_distributions.dir/build -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_bfgs.dir/link.d CMakeFiles/test_bfgs.dir/test_bfgs.cpp.o -o test_bfgs -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 -make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' +[ 83%] Linking CXX executable test_distributions +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_distributions.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_distributions.dir/link.d CMakeFiles/test_distributions.dir/test_distributions.cpp.o -o test_distributions -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' -[ 84%] Building CXX object test/CMakeFiles/test_distributions.dir/test_distributions.cpp.o -[ 84%] Built target test_bfgs -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT test/CMakeFiles/test_distributions.dir/test_distributions.cpp.o -MF CMakeFiles/test_distributions.dir/test_distributions.cpp.o.d -o CMakeFiles/test_distributions.dir/test_distributions.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/test/test_distributions.cpp +[ 83%] Built target test_distributions make -f test/CMakeFiles/test_downhill.dir/build.make test/CMakeFiles/test_downhill.dir/depend make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-core-2.4.1 /build/reproducible-path/libbpp-core-2.4.1/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf 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-D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT test/CMakeFiles/test_downhill.dir/test_downhill.cpp.o -MF CMakeFiles/test_downhill.dir/test_downhill.cpp.o.d -o CMakeFiles/test_downhill.dir/test_downhill.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/test/test_downhill.cpp -[ 85%] Linking CXX executable test_distributions -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_distributions.dir/link.txt --verbose=1 -[ 85%] Linking CXX executable test_downhill -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_downhill.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_distributions.dir/link.d CMakeFiles/test_distributions.dir/test_distributions.cpp.o -o test_distributions -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 +pp/Numeric/Hmm/RescaledHmmLikelihood.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Numeric/NumTools.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Parameter.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Numeric/ParameterExceptions.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Numeric/ParameterList.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/AbstractDiscreteDistribution.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/BetaDiscreteDistribution.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/ConstantDistribution.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/DirichletDiscreteDistribution.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/ExponentialDiscreteDistribution.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/GammaDiscreteDistribution.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/GaussianDiscreteDistribution.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/InvariantMixedDiscreteDistribution.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/MixtureOfDiscreteDistributions.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/SimpleDiscreteDistribution.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/Simplex.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/TruncatedExponentialDiscreteDistribution.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Prob/UniformDiscreteDistribution.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/ContingencyTableGenerator.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/RandomTools.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/Uniform01K.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/Uniform01QD.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Random/Uniform01WH.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/ContingencyTableTest.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/Mva/CorrespondenceAnalysis.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/Mva/DualityDiagram.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/Mva/PrincipalComponentAnalysis.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Numeric/Stat/StatTools.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Numeric/VectorTools.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Text/KeyvalTools.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Text/NestedStringTokenizer.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Text/StringTokenizer.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Text/TextTools.cpp.o" "CMakeFiles/bpp-core-static.dir/Bpp/Utils/AttributesTools.cpp.o" +/usr/bin/ranlib libbpp-core.a make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' -[ 85%] Built target test_distributions +[ 84%] Built target bpp-core-static make -f test/CMakeFiles/test_eigen.dir/build.make test/CMakeFiles/test_eigen.dir/depend make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-core-2.4.1 /build/reproducible-path/libbpp-core-2.4.1/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/CMakeFiles/test_eigen.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_downhill.dir/link.d CMakeFiles/test_downhill.dir/test_downhill.cpp.o -o test_downhill -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 -make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_eigen.dir/build.make test/CMakeFiles/test_eigen.dir/build make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' -[ 85%] Built target test_downhill +[ 85%] Building CXX object test/CMakeFiles/test_eigen.dir/test_eigen.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT test/CMakeFiles/test_eigen.dir/test_eigen.cpp.o -MF CMakeFiles/test_eigen.dir/test_eigen.cpp.o.d -o CMakeFiles/test_eigen.dir/test_eigen.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/test/test_eigen.cpp +[ 86%] Linking CXX executable test_derivative1 +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_derivative1.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_derivative1.dir/link.d CMakeFiles/test_derivative1.dir/test_derivative1.cpp.o -o test_derivative1 -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 +make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' +[ 86%] Built target test_derivative1 make -f test/CMakeFiles/test_gradient.dir/build.make test/CMakeFiles/test_gradient.dir/depend make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-core-2.4.1 /build/reproducible-path/libbpp-core-2.4.1/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/CMakeFiles/test_gradient.dir/DependInfo.cmake "--color=" -[ 86%] Building CXX object test/CMakeFiles/test_eigen.dir/test_eigen.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT test/CMakeFiles/test_eigen.dir/test_eigen.cpp.o -MF CMakeFiles/test_eigen.dir/test_eigen.cpp.o.d -o CMakeFiles/test_eigen.dir/test_eigen.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/test/test_eigen.cpp make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_gradient.dir/build.make test/CMakeFiles/test_gradient.dir/build make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' [ 87%] Building CXX object test/CMakeFiles/test_gradient.dir/test_gradient.cpp.o cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT test/CMakeFiles/test_gradient.dir/test_gradient.cpp.o -MF CMakeFiles/test_gradient.dir/test_gradient.cpp.o.d -o CMakeFiles/test_gradient.dir/test_gradient.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/test/test_gradient.cpp -In file included from /usr/include/c++/14/map:62, - from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/../AbstractParametrizable.h:47, - from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/Functions.h:45, - from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/Optimizer.h:43, - from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/AbstractOptimizer.h:43, - from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/ConjugateGradientMultiDimensions.h:43, - from /build/reproducible-path/libbpp-core-2.4.1/test/test_gradient.cpp:40: -/usr/include/c++/14/bits/stl_tree.h: In function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]': -/usr/include/c++/14/bits/stl_tree.h:2206:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 - 2206 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 87%] Linking CXX executable test_gradient -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_gradient.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_gradient.dir/link.d CMakeFiles/test_gradient.dir/test_gradient.cpp.o -o test_gradient -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 +[ 87%] Linking CXX executable test_downhill +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_downhill.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_downhill.dir/link.d CMakeFiles/test_downhill.dir/test_downhill.cpp.o -o test_downhill -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' -[ 87%] Built target test_gradient +[ 87%] Built target test_downhill make -f test/CMakeFiles/test_graphObs.dir/build.make test/CMakeFiles/test_graphObs.dir/depend make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-core-2.4.1 /build/reproducible-path/libbpp-core-2.4.1/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/CMakeFiles/test_graphObs.dir/DependInfo.cmake "--color=" @@ -2556,11 +2576,22 @@ 1144 | ~EdgeIteratorClass() {} | ^ /build/reproducible-path/libbpp-core-2.4.1/test/../src/Bpp/Graph/AssociationGraphImplObserver.h:1144:5: note: remove the '< >' -[ 88%] Linking CXX executable test_eigen -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_eigen.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_eigen.dir/link.d CMakeFiles/test_eigen.dir/test_eigen.cpp.o -o test_eigen -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 +In file included from /usr/include/c++/14/map:62, + from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/../AbstractParametrizable.h:47, + from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/Functions.h:45, + from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/Optimizer.h:43, + from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/AbstractOptimizer.h:43, + from /build/reproducible-path/libbpp-core-2.4.1/src/Bpp/Numeric/Function/ConjugateGradientMultiDimensions.h:43, + from /build/reproducible-path/libbpp-core-2.4.1/test/test_gradient.cpp:40: +/usr/include/c++/14/bits/stl_tree.h: In function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]': +/usr/include/c++/14/bits/stl_tree.h:2206:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 + 2206 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 88%] Linking CXX executable test_gradient +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_gradient.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_gradient.dir/link.d CMakeFiles/test_gradient.dir/test_gradient.cpp.o -o test_gradient -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' -[ 88%] Built target test_eigen +[ 88%] Built target test_gradient make -f test/CMakeFiles/test_matrices.dir/build.make test/CMakeFiles/test_matrices.dir/depend make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-core-2.4.1 /build/reproducible-path/libbpp-core-2.4.1/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/CMakeFiles/test_matrices.dir/DependInfo.cmake "--color=" @@ -2569,26 +2600,24 @@ make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' [ 89%] Building CXX object test/CMakeFiles/test_matrices.dir/test_matrices.cpp.o cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT test/CMakeFiles/test_matrices.dir/test_matrices.cpp.o -MF CMakeFiles/test_matrices.dir/test_matrices.cpp.o.d -o CMakeFiles/test_matrices.dir/test_matrices.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/test/test_matrices.cpp -[ 90%] Linking CXX executable test_dAGraphObs -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_dAGraphObs.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_dAGraphObs.dir/link.d CMakeFiles/test_dAGraphObs.dir/test_dAGraphObs.cpp.o -o test_dAGraphObs -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 +[ 89%] Linking CXX executable test_eigen +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_eigen.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_eigen.dir/link.d CMakeFiles/test_eigen.dir/test_eigen.cpp.o -o test_eigen -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' -[ 90%] Built target test_dAGraphObs +[ 89%] Built target test_eigen make -f test/CMakeFiles/test_mva.dir/build.make test/CMakeFiles/test_mva.dir/depend make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-core-2.4.1 /build/reproducible-path/libbpp-core-2.4.1/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/CMakeFiles/test_mva.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_mva.dir/build.make test/CMakeFiles/test_mva.dir/build make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' -[ 91%] Building CXX object test/CMakeFiles/test_mva.dir/test_mva.cpp.o +[ 90%] Building CXX object test/CMakeFiles/test_mva.dir/test_mva.cpp.o cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT test/CMakeFiles/test_mva.dir/test_mva.cpp.o -MF CMakeFiles/test_mva.dir/test_mva.cpp.o.d -o CMakeFiles/test_mva.dir/test_mva.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/test/test_mva.cpp -[ 91%] Linking CXX executable test_mva -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mva.dir/link.txt --verbose=1 -[ 91%] Linking CXX executable test_matrices -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_matrices.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_mva.dir/link.d CMakeFiles/test_mva.dir/test_mva.cpp.o -o test_mva -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 +[ 91%] Linking CXX executable test_dAGraphObs +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_dAGraphObs.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_dAGraphObs.dir/link.d CMakeFiles/test_dAGraphObs.dir/test_dAGraphObs.cpp.o -o test_dAGraphObs -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' -[ 91%] Built target test_mva +[ 91%] Built target test_dAGraphObs make -f test/CMakeFiles/test_numconstants.dir/build.make test/CMakeFiles/test_numconstants.dir/depend make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-core-2.4.1 /build/reproducible-path/libbpp-core-2.4.1/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/CMakeFiles/test_numconstants.dir/DependInfo.cmake "--color=" @@ -2597,6 +2626,8 @@ make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' [ 92%] Building CXX object test/CMakeFiles/test_numconstants.dir/test_numconstants.cpp.o cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT test/CMakeFiles/test_numconstants.dir/test_numconstants.cpp.o -MF CMakeFiles/test_numconstants.dir/test_numconstants.cpp.o.d -o CMakeFiles/test_numconstants.dir/test_numconstants.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/test/test_numconstants.cpp +[ 92%] Linking CXX executable test_matrices +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_matrices.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_matrices.dir/link.d CMakeFiles/test_matrices.dir/test_matrices.cpp.o -o test_matrices -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' [ 92%] Built target test_matrices @@ -2621,84 +2652,94 @@ make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' [ 92%] Building CXX object test/CMakeFiles/test_range.dir/test_range.cpp.o cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT test/CMakeFiles/test_range.dir/test_range.cpp.o -MF CMakeFiles/test_range.dir/test_range.cpp.o.d -o CMakeFiles/test_range.dir/test_range.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/test/test_range.cpp -[ 93%] Linking CXX executable test_powell -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_powell.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_powell.dir/link.d CMakeFiles/test_powell.dir/test_powell.cpp.o -o test_powell -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 +[ 92%] Linking CXX executable test_mva +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mva.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_mva.dir/link.d CMakeFiles/test_mva.dir/test_mva.cpp.o -o test_mva -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' -[ 93%] Built target test_powell +[ 92%] Built target test_mva make -f test/CMakeFiles/test_reparametrization.dir/build.make test/CMakeFiles/test_reparametrization.dir/depend make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-core-2.4.1 /build/reproducible-path/libbpp-core-2.4.1/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/CMakeFiles/test_reparametrization.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_reparametrization.dir/build.make test/CMakeFiles/test_reparametrization.dir/build make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' -[ 93%] Building CXX object test/CMakeFiles/test_reparametrization.dir/test_reparametrization.cpp.o +[ 92%] Building CXX object test/CMakeFiles/test_reparametrization.dir/test_reparametrization.cpp.o cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT test/CMakeFiles/test_reparametrization.dir/test_reparametrization.cpp.o -MF CMakeFiles/test_reparametrization.dir/test_reparametrization.cpp.o.d -o CMakeFiles/test_reparametrization.dir/test_reparametrization.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/test/test_reparametrization.cpp -[ 94%] Linking CXX executable test_range -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_range.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_range.dir/link.d CMakeFiles/test_range.dir/test_range.cpp.o -o test_range -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 +[ 92%] Linking CXX executable test_graphObs +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graphObs.dir/link.txt --verbose=1 +[ 93%] Linking CXX executable test_powell +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_powell.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_graphObs.dir/link.d CMakeFiles/test_graphObs.dir/test_graphObs.cpp.o -o test_graphObs -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' -[ 94%] Built target test_range +[ 93%] Built target test_graphObs make -f test/CMakeFiles/test_sample.dir/build.make test/CMakeFiles/test_sample.dir/depend make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-core-2.4.1 /build/reproducible-path/libbpp-core-2.4.1/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/CMakeFiles/test_sample.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_sample.dir/build.make test/CMakeFiles/test_sample.dir/build make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' -[ 94%] Building CXX object test/CMakeFiles/test_sample.dir/test_sample.cpp.o +[ 93%] Building CXX object test/CMakeFiles/test_sample.dir/test_sample.cpp.o cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT test/CMakeFiles/test_sample.dir/test_sample.cpp.o -MF CMakeFiles/test_sample.dir/test_sample.cpp.o.d -o CMakeFiles/test_sample.dir/test_sample.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/test/test_sample.cpp -[ 94%] Linking CXX executable test_graphObs -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graphObs.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_graphObs.dir/link.d CMakeFiles/test_graphObs.dir/test_graphObs.cpp.o -o test_graphObs -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_powell.dir/link.d CMakeFiles/test_powell.dir/test_powell.cpp.o -o test_powell -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' -[ 94%] Built target test_graphObs +[ 93%] Built target test_powell make -f test/CMakeFiles/test_simplex.dir/build.make test/CMakeFiles/test_simplex.dir/depend make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-core-2.4.1 /build/reproducible-path/libbpp-core-2.4.1/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/CMakeFiles/test_simplex.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_simplex.dir/build.make test/CMakeFiles/test_simplex.dir/build make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' -[ 94%] Building CXX object test/CMakeFiles/test_simplex.dir/test_simplex.cpp.o +[ 93%] Building CXX object test/CMakeFiles/test_simplex.dir/test_simplex.cpp.o cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT test/CMakeFiles/test_simplex.dir/test_simplex.cpp.o -MF CMakeFiles/test_simplex.dir/test_simplex.cpp.o.d -o CMakeFiles/test_simplex.dir/test_simplex.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/test/test_simplex.cpp +[ 94%] Linking CXX executable test_range +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_range.dir/link.txt --verbose=1 [ 95%] Linking CXX executable test_reparametrization cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_reparametrization.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_reparametrization.dir/link.d CMakeFiles/test_reparametrization.dir/test_reparametrization.cpp.o -o test_reparametrization -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_range.dir/link.d CMakeFiles/test_range.dir/test_range.cpp.o -o test_range -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' -[ 95%] Built target test_reparametrization +[ 95%] Built target test_range make -f test/CMakeFiles/test_stats.dir/build.make test/CMakeFiles/test_stats.dir/depend make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-core-2.4.1 /build/reproducible-path/libbpp-core-2.4.1/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/CMakeFiles/test_stats.dir/DependInfo.cmake "--color=" +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_reparametrization.dir/link.d CMakeFiles/test_reparametrization.dir/test_reparametrization.cpp.o -o test_reparametrization -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 +make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_stats.dir/build.make test/CMakeFiles/test_stats.dir/build make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' -[ 95%] Building CXX object test/CMakeFiles/test_stats.dir/test_stats.cpp.o -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT test/CMakeFiles/test_stats.dir/test_stats.cpp.o -MF CMakeFiles/test_stats.dir/test_stats.cpp.o.d -o CMakeFiles/test_stats.dir/test_stats.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/test/test_stats.cpp -[ 96%] Linking CXX executable test_sample -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sample.dir/link.txt --verbose=1 -[ 97%] Linking CXX executable test_simplex -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_simplex.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_sample.dir/link.d CMakeFiles/test_sample.dir/test_sample.cpp.o -o test_sample -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 -make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' -[ 97%] Built target test_sample +[ 95%] Built target test_reparametrization make -f test/CMakeFiles/test_text_tools.dir/build.make test/CMakeFiles/test_text_tools.dir/depend make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-core-2.4.1 /build/reproducible-path/libbpp-core-2.4.1/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/CMakeFiles/test_text_tools.dir/DependInfo.cmake "--color=" +[ 95%] Building CXX object test/CMakeFiles/test_stats.dir/test_stats.cpp.o +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT test/CMakeFiles/test_stats.dir/test_stats.cpp.o -MF CMakeFiles/test_stats.dir/test_stats.cpp.o.d -o CMakeFiles/test_stats.dir/test_stats.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/test/test_stats.cpp make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_text_tools.dir/build.make test/CMakeFiles/test_text_tools.dir/build make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' -[ 97%] Building CXX object test/CMakeFiles/test_text_tools.dir/test_text_tools.cpp.o +[ 95%] Building CXX object test/CMakeFiles/test_text_tools.dir/test_text_tools.cpp.o cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT test/CMakeFiles/test_text_tools.dir/test_text_tools.cpp.o -MF CMakeFiles/test_text_tools.dir/test_text_tools.cpp.o.d -o CMakeFiles/test_text_tools.dir/test_text_tools.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/test/test_text_tools.cpp +[ 96%] Linking CXX executable test_simplex +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_simplex.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_simplex.dir/link.d CMakeFiles/test_simplex.dir/test_simplex.cpp.o -o test_simplex -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' -[ 97%] Built target test_simplex +[ 96%] Built target test_simplex make -f test/CMakeFiles/test_treeGraphObs.dir/build.make test/CMakeFiles/test_treeGraphObs.dir/depend make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-core-2.4.1 /build/reproducible-path/libbpp-core-2.4.1/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/CMakeFiles/test_treeGraphObs.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_treeGraphObs.dir/build.make test/CMakeFiles/test_treeGraphObs.dir/build make[3]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' -[ 97%] Building CXX object test/CMakeFiles/test_treeGraphObs.dir/test_treeGraphObs.cpp.o +[ 96%] Building CXX object test/CMakeFiles/test_treeGraphObs.dir/test_treeGraphObs.cpp.o cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/build/reproducible-path/libbpp-core-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT test/CMakeFiles/test_treeGraphObs.dir/test_treeGraphObs.cpp.o -MF CMakeFiles/test_treeGraphObs.dir/test_treeGraphObs.cpp.o.d -o CMakeFiles/test_treeGraphObs.dir/test_treeGraphObs.cpp.o -c /build/reproducible-path/libbpp-core-2.4.1/test/test_treeGraphObs.cpp +[ 97%] Linking CXX executable test_sample +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sample.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_sample.dir/link.d CMakeFiles/test_sample.dir/test_sample.cpp.o -o test_sample -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 +make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' +[ 97%] Built target test_sample +[ 98%] Linking CXX executable test_stats +cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_stats.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_stats.dir/link.d CMakeFiles/test_stats.dir/test_stats.cpp.o -o test_stats -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 +make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' +[ 98%] Built target test_stats In file included from /build/reproducible-path/libbpp-core-2.4.1/test/../src/Bpp/Graph/TreeGraphImpl.h:50, from /build/reproducible-path/libbpp-core-2.4.1/test/../src/Bpp/Graph/AssociationTreeGraphImplObserver.h:43, from /build/reproducible-path/libbpp-core-2.4.1/test/test_treeGraphObs.cpp:41: @@ -2831,11 +2872,6 @@ 1144 | ~EdgeIteratorClass() {} | ^ /build/reproducible-path/libbpp-core-2.4.1/test/../src/Bpp/Graph/AssociationGraphImplObserver.h:1144:5: note: remove the '< >' -[ 98%] Linking CXX executable test_stats -cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_stats.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_stats.dir/link.d CMakeFiles/test_stats.dir/test_stats.cpp.o -o test_stats -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 -make[3]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' -[ 98%] Built target test_stats [ 99%] Linking CXX executable test_text_tools cd /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_text_tools.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-core-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_text_tools.dir/link.d CMakeFiles/test_text_tools.dir/test_text_tools.cpp.o -o test_text_tools -Wl,-rpath,/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-core.so.4.1.0 @@ -2850,10 +2886,10 @@ /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' dh_auto_test - cd obj-arm-linux-gnueabihf && make -j3 test ARGS\+=--verbose ARGS\+=-j3 + cd obj-arm-linux-gnueabihf && make -j4 test ARGS\+=--verbose ARGS\+=-j4 make[1]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j3 +/usr/bin/ctest --force-new-ctest-process --verbose -j4 UpdateCTestConfiguration from :/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/DartConfiguration.tcl Parse Config file:/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/DartConfiguration.tcl @@ -2884,6 +2920,14 @@ 3: Test command: /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/test_derivative1 3: Working Directory: /build/reproducible-path/libbpp-core-2.4.1/test 3: Test timeout computed to be: 1500 +test 4 + Start 4: test_distributions + +4: Test command: /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/test_distributions +4: Working Directory: /build/reproducible-path/libbpp-core-2.4.1/test +4: Test timeout computed to be: 1500 +4: Testing Exponential distribution with lambda = 0.2: +4: Testing 2 classes. 1: 38 1: Step x y z Function Time 1: 0 0 0 0 38.000000 0.000000 @@ -2896,102 +2940,241 @@ 1: z=3.000461 1: f=0.000001 1: 0.00153852915943812445 - 1/19 Test #1: test_bfgs ........................ Passed 0.01 sec -2: Creating node zero. -2: digraph myTestDirGrObs { -2: 0; -2: } -2: Creating node one from the number zero. -2: digraph myTestDirGrObs { -2: 0 -> 1; -2: } -2: Creating node two from the number one. -2: digraph myTestDirGrObs { -2: 0 -> 1 -> 2; -2: } -2: Linking two to zero. -2: digraph myTestDirGrObs { -2: 0 -> 1 -> 2 -> 0; -2: } -2: Linking one to three and two to four. -2: digraph myTestDirGrObs { -2: 0 -> 1 -> 2 -> 0; -2: 2 -> 4; -2: 1 -> 3; -2: } -2: -2: Linking three to zero. -2: digraph myTestDirGrObs { -2: 0 -> 1 -> 2 -> 0 <- 3 <- 1; -2: 2 -> 4; -2: } -2: digraph myTestDirGrObs { -2: 0 -> 1 -> 2 -> 0 <- 3 <- 1; -2: 2 -> 4; -2: } -2: Is this a DAG? -2: FALSE -2: Removing 2->0 and 3->0 -2: digraph myTestDirGrObs { -2: 0 -> 1 -> 2 -> 4; -2: 1 -> 3; -2: } -2: Is this a DAG? -2: TRUE -2: -2: Iteration on sons of 1: -2: two -2: three -2: Reroot on one -2: digraph myTestDirGrObs { -2: 1 -> 0; -2: 1 -> 2 -> 4; -2: 1 -> 3; -2: } -2: Linking 3->2 -2: digraph myTestDirGrObs { -2: 1 -> 0; -2: 1 -> 2 -> 3 <- 1; -2: 2 -> 4; -2: } -2: -2: Is this a DAG? -2: TRUE -2: -2: Add nodes five and six -2: digraph myTestDirGrObs { -2: 1 -> 0; -2: 1 -> 2 -> 3 <- 1; -2: 2 -> 4 -> 6 -> 5 -> 4; -2: } -2: -2: Is this a DAG? -2: FALSE -2: -2: Reroot on two -2: digraph myTestDirGrObs { -2: 2 -> 1 -> 0; -2: 1 <- 3 <- 2 -> 4 -> 5 -> 6 <- 4; -2: } -2: Is this a DAG? -2: TRUE -2: -2: Test passed -test 4 - Start 4: test_distributions - -4: Test command: /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/test_distributions -4: Working Directory: /build/reproducible-path/libbpp-core-2.4.1/test -4: Test timeout computed to be: 1500 - 2/19 Test #2: test_dAGraphObs .................. Passed 0.01 sec + 1/19 Test #1: test_bfgs ........................ Passed 0.04 sec test 5 Start 5: test_downhill 5: Test command: /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/test_downhill 5: Working Directory: /build/reproducible-path/libbpp-core-2.4.1/test 5: Test timeout computed to be: 1500 -4: Testing Exponential distribution with lambda = 0.2: -4: Testing 2 classes. +5: 38 +5: Step x y z Function Time +5: 0 0 0 0 38.000000 0.000000 +5: Optimizing... / 13 0.2 0 0 36.040000 0.000000 +5: Optimizing... - 46 0.2 -0.4 0.2 33.440000 0.000000 +5: Optimizing... \ 79 0.4 -0.4 0.4 30.480000 0.000000 +5: Optimizing... - 1012 0.8 -0.8 0.2 26.920000 0.000000 +5: Optimizing... / 1315 1 -1.6 0.8 21.000000 0.000000 +5: Optimizing... - 1618 1.8 -2 1 14.240000 0.000000 +5: Optimizing... \ 1921 2.8 -3.6 1.2 10.640000 0.000000 +5: Optimizing... - 2223 2.93333 -4 1.8 9.711111 0.000000 +5: Optimizing... - 2426 2.93333 -4 1.8 9.711111 0.000000 +5: Optimizing... \ 2729 2.93333 -4 1.8 9.711111 0.000000 +5: Optimizing... - 3032 3.52099 -4.31111 2.11852 8.305722 0.000000 +5: Optimizing... / 3335 3.52099 -4.31111 2.11852 8.305722 0.000000 +5: Optimizing... - 3638 3.52099 -4.31111 2.11852 8.305722 0.000000 +5: Optimizing... \ 3941 4.25171 -4.43457 1.99465 7.497780 0.000000 +5: Optimizing... - 4243 3.60508 -3.65432 2.02016 5.642670 0.000000 +5: Optimizing... - 4446 3.60508 -3.65432 2.02016 5.642670 0.000000 +5: Optimizing... \ 4749 5.39095 -4.01481 2.24691 4.779457 0.000000 +5: Optimizing... - 5052 5.06872 -3.34815 2.74691 1.886279 0.000000 +5: Optimizing... / 5354 4.91248 -1.92099 2.07572 0.868195 0.000000 +5: Optimizing... \ 5556 4.91248 -1.92099 2.07572 0.868195 0.000000 +5: Optimizing... / 5758 4.91248 -1.92099 2.07572 0.868195 0.000000 +5: Optimizing... \ 5961 4.91248 -1.92099 2.07572 0.868195 0.000000 +5: Optimizing... - 6264 4.93604 -2.48718 2.57406 0.422859 0.000000 +5: Optimizing... / 6567 4.93604 -2.48718 2.57406 0.422859 0.000000 +5: Optimizing... - 6870 5.23618 -1.63158 2.55964 0.385428 0.000000 +5: Optimizing... \ 7172 4.86427 -2.03655 2.9586 0.021473 0.000000 +5: Optimizing... / 7375 4.86427 -2.03655 2.9586 0.021473 0.000000 +5: Optimizing... - 7678 4.86427 -2.03655 2.9586 0.021473 0.000000 +5: Optimizing... \ 7981 4.86427 -2.03655 2.9586 0.021473 0.000000 +5: Optimizing... - 8283 4.86427 -2.03655 2.9586 0.021473 0.000000 +5: Optimizing... - 8486 4.86427 -2.03655 2.9586 0.021473 0.000000 +5: Optimizing... \ 8788 4.86427 -2.03655 2.9586 0.021473 0.000000 +5: Optimizing... / 8991 4.86427 -2.03655 2.9586 0.021473 0.000000 +5: Optimizing... - 9294 5.07694 -1.94377 3.00846 0.009154 0.000000 +5: Optimizing... \ 9597 5.07045 -2.02994 2.97016 0.006750 0.000000 +5: Optimizing... - 98100 5.07045 -2.02994 2.97016 0.006750 0.000000 +5: Optimizing... / 101103 4.952 -2.01795 2.9893 0.002741 0.000000 +5: Optimizing... - 104106 5.03751 -1.98392 3.01103 0.001787 0.000000 +5: Optimizing... \ 107109 4.99588 -2.01745 3.03576 0.001600 0.000000 +5: Optimizing... - 110112 5.03279 -2.01819 2.99109 0.001485 0.000000 +5: Optimizing... / 113115 4.98703 -2.01223 3.00096 0.000319 0.000000 +5: Optimizing... - 116118 4.98703 -2.01223 3.00096 0.000319 0.000000 +5: Optimizing... \ 119121 4.98703 -2.01223 3.00096 0.000319 0.000000 +5: Optimizing... - 122124 4.98703 -2.01223 3.00096 0.000319 0.000000 +5: Optimizing... / 125126 5.00769 -2.00495 3.01147 0.000215 0.000000 +5: Optimizing... \ 127129 5.00769 -2.00495 3.01147 0.000215 0.000000 +5: Optimizing... - 130132 4.99637 -2.00775 2.99101 0.000154 0.000000 +5: Optimizing... / 133135 5.00578 -1.99641 3.00255 0.000053 0.000000 +5: Optimizing... - 136138 4.99421 -2.00165 3.00224 0.000041 0.000000 +5: Optimizing... \ 139141 4.99421 -2.00165 3.00224 0.000041 0.000000 +5: Optimizing... - 142144 4.99872 -2.00412 2.99714 0.000027 0.000000 +5: Optimizing... / 145147 5.00225 -1.99974 3.00201 0.000009 0.000000 +5: Optimizing... - 148150 5.00225 -1.99974 3.00201 0.000009 0.000000 +5: Optimizing... \ 151153 5.00225 -1.99974 3.00201 0.000009 0.000000 +5: Optimizing... - 154156 4.99944 -2.00277 2.9996 0.000008 0.000000 +5: Optimizing... / 157158 4.99858 -2.00031 2.99929 0.000003 0.000000 +5: Optimizing... \ 159161 4.99858 -2.00031 2.99929 0.000003 0.000000 +5: Optimizing... - 162164 5.00126 -2.00038 3.00068 0.000002 0.000000 +5: Optimizing... / 165167 5.00127 -2.00056 2.99951 0.000002 0.000000 +5: Optimizing... - 168170 5.00083 -1.99924 2.99994 0.000001 0.000000 +5: Optimizing... \ 171172 4.99985 -2.00018 2.99967 0.000000 0.000000 +5: Optimizing... / 173175 4.99985 -2.00018 2.99967 0.000000 0.000000 +5: Optimizing... - 176178 4.99985 -2.00018 2.99967 0.000000 0.000000 +5: Optimizing... \ 179181 4.99985 -2.00018 2.99967 0.000000 0.000000 +5: Optimizing... - 182183 4.99985 -2.00018 2.99967 0.000000 0.000000 +5: Optimizing... - 184186 4.99985 -2.00018 2.99967 0.000000 0.000000 +5: Optimizing... \ 187188 5.00032 -2.00015 3.00002 0.000000 0.000000 +5: Optimizing... / 189191 5.00032 -2.00015 3.00002 0.000000 0.000000 +5: Optimizing... - 192194 5.00017 -1.99985 2.99974 0.000000 0.000000 +5: Optimizing... \ 195197 4.99996 -2.00008 2.99983 0.000000 0.000000 +5: Optimizing... - 198200 4.99994 -1.99998 3.00005 0.000000 0.000000 +5: Optimizing... / 201203 4.99994 -1.99998 3.00005 0.000000 0.000000 +5: Optimizing... - 204206 4.99994 -1.99998 3.00005 0.000000 0.000000 +5: Optimizing... \ 207209 4.99994 -1.99998 3.00005 0.000000 0.000000 +5: Optimizing... - 210212 4.99994 -1.99998 3.00005 0.000000 0.000000 +5: Optimizing... / 213214 5.00001 -1.99999 2.99994 0.000000 0.000000 +5: Optimizing... \ 215217 5.00001 -1.99999 2.99994 0.000000 0.000000 +5: Optimizing... - 218220 5.00003 -2.00002 2.99999 0.000000 0.000000 +5: Optimizing... / 221223 4.99998 -1.99998 3.00002 0.000000 0.000000 +5: Optimizing... - 224226 4.99998 -1.99998 3.00002 0.000000 0.000000 +5: Optimizing... \ 227228 5.00001 -1.99999 2.99998 0.000000 0.000000 +5: Optimizing... / 229231 5.00001 -1.99999 2.99998 0.000000 0.000000 +5: Optimizing... - 232234 5.00001 -2.00001 2.99999 0.000000 0.000000 +5: Optimizing... \ 235237 4.99999 -1.99999 3 0.000000 0.000000 +5: Optimizing... - 238239 4.99999 -1.99999 3 0.000000 0.000000 +5: Optimizing... - 240241 4.99999 -1.99999 3 0.000000 0.000000 +5: Optimizing... - 242244 4.99999 -1.99999 3 0.000000 0.000000 +5: Optimizing... / 245247 5 -2 3 0.000000 0.000000 +5: Optimizing... - 248250 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 251253 5 -2 3 0.000000 0.000000 +5: Optimizing... - 254255 5 -2 3 0.000000 0.000000 +5: Optimizing... - 256258 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 259261 5 -2 3 0.000000 0.000000 +5: Optimizing... - 262264 5 -2 3 0.000000 0.000000 +5: Optimizing... / 265267 5 -2 3 0.000000 0.000000 +5: Optimizing... - 268270 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 271273 5 -2 3 0.000000 0.000000 +5: Optimizing... - 274276 5 -2 3 0.000000 0.000000 +5: Optimizing... / 277279 5 -2 3 0.000000 0.000000 +5: Optimizing... - 280281 5 -2 3 0.000000 0.000000 +5: Optimizing... - 282283 5 -2 3 0.000000 0.000000 +5: Optimizing... - 284286 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 287289 5 -2 3 0.000000 0.000000 +5: Optimizing... - 290292 5 -2 3 0.000000 0.000000 +5: Optimizing... / 293294 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 295297 5 -2 3 0.000000 0.000000 +5: Optimizing... - 298300 5 -2 3 0.000000 0.000000 +5: Optimizing... / 301303 5 -2 3 0.000000 0.000000 +5: Optimizing... - 304306 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 307309 5 -2 3 0.000000 0.000000 +5: Optimizing... - 310312 5 -2 3 0.000000 0.000000 +5: Optimizing... / 313315 5 -2 3 0.000000 0.000000 +5: Optimizing... - 316318 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 319321 5 -2 3 0.000000 0.000000 +5: Optimizing... - 322323 5 -2 3 0.000000 0.000000 +5: Optimizing... - 324326 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 327329 5 -2 3 0.000000 0.000000 +5: Optimizing... - 330332 5 -2 3 0.000000 0.000000 +5: Optimizing... / 333334 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 335337 5 -2 3 0.000000 0.000000 +5: Optimizing... - 338340 5 -2 3 0.000000 0.000000 +5: Optimizing... / 341343 5 -2 3 0.000000 0.000000 +5: Optimizing... - 344346 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 347349 5 -2 3 0.000000 0.000000 +5: Optimizing... - 350352 5 -2 3 0.000000 0.000000 +5: Optimizing... / 353355 5 -2 3 0.000000 0.000000 +5: Optimizing... - 356357 5 -2 3 0.000000 0.000000 +5: Optimizing... - 358360 5 -2 3 0.000000 0.000000 +5: Optimizing... / 361363 5 -2 3 0.000000 0.000000 +5: Optimizing... - 364366 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 367369 5 -2 3 0.000000 0.000000 +5: Optimizing... - 370372 5 -2 3 0.000000 0.000000 +5: Optimizing... / 373374 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 375377 5 -2 3 0.000000 0.000000 +5: Optimizing... - 378380 5 -2 3 0.000000 0.000000 +5: Optimizing... / 381383 5 -2 3 0.000000 0.000000 +5: Optimizing... - 384386 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 387389 5 -2 3 0.000000 0.000000 +5: Optimizing... - 390392 5 -2 3 0.000000 0.000000 +5: Optimizing... / 393395 5 -2 3 0.000000 0.000000 +5: Optimizing... - 396398 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 399401 5 -2 3 0.000000 0.000000 +5: Optimizing... - 402404 5 -2 3 0.000000 0.000000 +5: Optimizing... / 405407 5 -2 3 0.000000 0.000000 +5: Optimizing... - 408410 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 411413 5 -2 3 0.000000 0.000000 +5: Optimizing... - 414416 5 -2 3 0.000000 0.000000 +5: Optimizing... / 417419 5 -2 3 0.000000 0.000000 +5: Optimizing... - 420422 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 423424 5 -2 3 0.000000 0.000000 +5: Optimizing... / 425427 5 -2 3 0.000000 0.000000 +5: Optimizing... - 428430 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 431432 5 -2 3 0.000000 0.000000 +5: Optimizing... / 433435 5 -2 3 0.000000 0.000000 +5: Optimizing... - 436438 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 439441 5 -2 3 0.000000 0.000000 +5: Optimizing... - 442444 5 -2 3 0.000000 0.000000 +5: Optimizing... / 445447 5 -2 3 0.000000 0.000000 +5: Optimizing... - 448450 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 451453 5 -2 3 0.000000 0.000000 +5: Optimizing... - 454456 5 -2 3 0.000000 0.000000 +5: Optimizing... / 457458 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 459460 5 -2 3 0.000000 0.000000 +5: Optimizing... / 461462 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 463465 5 -2 3 0.000000 0.000000 +5: Optimizing... - 466468 5 -2 3 0.000000 0.000000 +5: Optimizing... / 469471 5 -2 3 0.000000 0.000000 +5: Optimizing... - 472474 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 475477 5 -2 3 0.000000 0.000000 +5: Optimizing... - 478480 5 -2 3 0.000000 0.000000 +5: Optimizing... / 481483 5 -2 3 0.000000 0.000000 +5: Optimizing... - 484486 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 487489 5 -2 3 0.000000 0.000000 +5: Optimizing... - 490492 5 -2 3 0.000000 0.000000 +5: Optimizing... / 493494 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 495497 5 -2 3 0.000000 0.000000 +5: Optimizing... - 498500 5 -2 3 0.000000 0.000000 +5: Optimizing... / 501503 5 -2 3 0.000000 0.000000 +5: Optimizing... - 504506 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 507509 5 -2 3 0.000000 0.000000 +5: Optimizing... - 510512 5 -2 3 0.000000 0.000000 +5: Optimizing... / 513515 5 -2 3 0.000000 0.000000 +5: Optimizing... - 516518 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 519520 5 -2 3 0.000000 0.000000 +5: Optimizing... / 521523 5 -2 3 0.000000 0.000000 +5: Optimizing... - 524526 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 527529 5 -2 3 0.000000 0.000000 +5: Optimizing... - 530532 5 -2 3 0.000000 0.000000 +5: Optimizing... / 533535 5 -2 3 0.000000 0.000000 +5: Optimizing... - 536538 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 539541 5 -2 3 0.000000 0.000000 +5: Optimizing... - 542544 5 -2 3 0.000000 0.000000 +5: Optimizing... / 545547 5 -2 3 0.000000 0.000000 +5: Optimizing... - 548549 5 -2 3 0.000000 0.000000 +5: Optimizing... - 550551 5 -2 3 0.000000 0.000000 +5: Optimizing... - 552554 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 555557 5 -2 3 0.000000 0.000000 +5: Optimizing... - 558560 5 -2 3 0.000000 0.000000 +5: Optimizing... / 561563 5 -2 3 0.000000 0.000000 +5: Optimizing... - 564566 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 567569 5 -2 3 0.000000 0.000000 +5: Optimizing... - 570572 5 -2 3 0.000000 0.000000 +5: Optimizing... / 573581 5 -2 3 0.000000 0.000000 +5: Optimizing... - 582584 5 -2 3 0.000000 0.000000 +5: Optimizing... / 585587 5 -2 3 0.000000 0.000000 +5: Optimizing... - 588589 5 -2 3 0.000000 0.000000 +5: Optimizing... - 590592 5 -2 3 0.000000 0.000000 +5: Optimizing... / 593595 5 -2 3 0.000000 0.000000 +5: Optimizing... - 596598 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 599601 5 -2 3 0.000000 0.000000 +5: Optimizing... - 602604 5 -2 3 0.000000 0.000000 +5: Optimizing... / 605607 5 -2 3 0.000000 0.000000 +5: Optimizing... - 608610 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 611613 5 -2 3 0.000000 0.000000 +5: Optimizing... - 614616 5 -2 3 0.000000 0.000000 +5: Optimizing... / 617619 5 -2 3 0.000000 0.000000 +5: Optimizing... - 620621 5 -2 3 0.000000 0.000000 +5: Optimizing... - 622624 5 -2 3 0.000000 0.000000 +5: Optimizing... / 625626 5 -2 3 0.000000 0.000000 +5: Optimizing... \ 627629 5 -2 3 0.000000 0.000000 +5: x=5.000000 +5: y=-2.000000 +5: z=3.000000 +5: f=0.000000 +5: 0.00000000000000222045 4: Test sum of probabilities: ok 4: Test equality of probabilities: ok 4: Testing 7 classes. @@ -3193,6 +3376,88 @@ 4: Test sum of probabilities: ok 4: Test equality of probabilities: ok 4: Testing 32 classes. +2: Creating node zero. +2: digraph myTestDirGrObs { +2: 0; +2: } +2: Creating node one from the number zero. +2: digraph myTestDirGrObs { +2: 0 -> 1; +2: } +2: Creating node two from the number one. +2: digraph myTestDirGrObs { +2: 0 -> 1 -> 2; +2: } +2: Linking two to zero. +2: digraph myTestDirGrObs { +2: 0 -> 1 -> 2 -> 0; +2: } +2: Linking one to three and two to four. +2: digraph myTestDirGrObs { +2: 0 -> 1 -> 2 -> 0; +2: 2 -> 4; +2: 1 -> 3; +2: } +2: +2: Linking three to zero. +2: digraph myTestDirGrObs { +2: 0 -> 1 -> 2 -> 0 <- 3 <- 1; +2: 2 -> 4; +2: } +2: digraph myTestDirGrObs { +2: 0 -> 1 -> 2 -> 0 <- 3 <- 1; +2: 2 -> 4; +2: } +2: Is this a DAG? +2: FALSE +2: Removing 2->0 and 3->0 +2: digraph myTestDirGrObs { +2: 0 -> 1 -> 2 -> 4; +2: 1 -> 3; +2: } +2: Is this a DAG? +2: TRUE +2: +2: Iteration on sons of 1: +2: two +2: three +2: Reroot on one +2: digraph myTestDirGrObs { +2: 1 -> 0; +2: 1 -> 2 -> 4; +2: 1 -> 3; +2: } +2: Linking 3->2 +2: digraph myTestDirGrObs { +2: 1 -> 0; +2: 1 -> 2 -> 3 <- 1; +2: 2 -> 4; +2: } +2: +2: Is this a DAG? +2: TRUE +2: +2: Add nodes five and six +2: digraph myTestDirGrObs { +2: 1 -> 0; +2: 1 -> 2 -> 3 <- 1; +2: 2 -> 4 -> 6 -> 5 -> 4; +2: } +2: +2: Is this a DAG? +2: FALSE +2: +2: Reroot on two +2: digraph myTestDirGrObs { +2: 2 -> 1 -> 0; +2: 1 <- 3 <- 2 -> 4 -> 5 -> 6 <- 4; +2: } +2: Is this a DAG? +2: TRUE +2: +2: Test passed + 2/19 Test #2: test_dAGraphObs .................. Passed 0.09 sec + 3/19 Test #5: test_downhill .................... Passed 0.05 sec 4: Test sum of probabilities: ok 4: Test equality of probabilities: ok 4: Testing 37 classes. @@ -3217,6 +3482,18 @@ 4: Test sum of probabilities: ok 4: Test equality of probabilities: ok 4: Testing 72 classes. +test 6 + Start 6: test_eigen + +6: Test command: /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/test_eigen +6: Working Directory: /build/reproducible-path/libbpp-core-2.4.1/test +6: Test timeout computed to be: 1500 +test 7 + Start 7: test_gradient + +7: Test command: /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/test_gradient +7: Working Directory: /build/reproducible-path/libbpp-core-2.4.1/test +7: Test timeout computed to be: 1500 4: Test sum of probabilities: ok 4: Test equality of probabilities: ok 4: Testing 77 classes. @@ -3368,248 +3645,6 @@ 4: 0.475042 0.4750416 4: 0.730634 0.7306344 4: 1 1 -5: 38 -5: Step x y z Function Time -5: 0 0 0 0 38.000000 0.000000 -5: Optimizing... / 13 0.2 0 0 36.040000 0.000000 -5: Optimizing... - 46 0.2 -0.4 0.2 33.440000 0.000000 -5: Optimizing... \ 79 0.4 -0.4 0.4 30.480000 0.000000 -5: Optimizing... - 1012 0.8 -0.8 0.2 26.920000 0.000000 -5: Optimizing... / 1315 1 -1.6 0.8 21.000000 0.000000 -5: Optimizing... - 1618 1.8 -2 1 14.240000 0.000000 -5: Optimizing... \ 1921 2.8 -3.6 1.2 10.640000 0.000000 -5: Optimizing... - 2223 2.93333 -4 1.8 9.711111 0.000000 -5: Optimizing... - 2426 2.93333 -4 1.8 9.711111 0.000000 -5: Optimizing... \ 2729 2.93333 -4 1.8 9.711111 0.000000 -5: Optimizing... - 3032 3.52099 -4.31111 2.11852 8.305722 0.000000 -5: Optimizing... / 3335 3.52099 -4.31111 2.11852 8.305722 0.000000 -5: Optimizing... - 3638 3.52099 -4.31111 2.11852 8.305722 0.000000 -5: Optimizing... \ 3941 4.25171 -4.43457 1.99465 7.497780 0.000000 -5: Optimizing... - 4243 3.60508 -3.65432 2.02016 5.642670 0.000000 -5: Optimizing... - 4446 3.60508 -3.65432 2.02016 5.642670 0.000000 -5: Optimizing... \ 4749 5.39095 -4.01481 2.24691 4.779457 0.000000 -5: Optimizing... - 5052 5.06872 -3.34815 2.74691 1.886279 0.000000 -5: Optimizing... / 5354 4.91248 -1.92099 2.07572 0.868195 0.000000 -5: Optimizing... \ 5556 4.91248 -1.92099 2.07572 0.868195 0.000000 -5: Optimizing... / 5758 4.91248 -1.92099 2.07572 0.868195 0.000000 -5: Optimizing... \ 5961 4.91248 -1.92099 2.07572 0.868195 0.000000 -5: Optimizing... - 6264 4.93604 -2.48718 2.57406 0.422859 0.000000 -5: Optimizing... / 6567 4.93604 -2.48718 2.57406 0.422859 0.000000 -5: Optimizing... - 6870 5.23618 -1.63158 2.55964 0.385428 0.000000 -5: Optimizing... \ 7172 4.86427 -2.03655 2.9586 0.021473 0.000000 -5: Optimizing... / 7375 4.86427 -2.03655 2.9586 0.021473 0.000000 -5: Optimizing... - 7678 4.86427 -2.03655 2.9586 0.021473 0.000000 -5: Optimizing... \ 7981 4.86427 -2.03655 2.9586 0.021473 0.000000 -5: Optimizing... - 8283 4.86427 -2.03655 2.9586 0.021473 0.000000 -5: Optimizing... - 8486 4.86427 -2.03655 2.9586 0.021473 0.000000 -5: Optimizing... \ 8788 4.86427 -2.03655 2.9586 0.021473 0.000000 -5: Optimizing... / 8991 4.86427 -2.03655 2.9586 0.021473 0.000000 -5: Optimizing... - 9294 5.07694 -1.94377 3.00846 0.009154 0.000000 -5: Optimizing... \ 9597 5.07045 -2.02994 2.97016 0.006750 0.000000 -5: Optimizing... - 98100 5.07045 -2.02994 2.97016 0.006750 0.000000 -5: Optimizing... / 101103 4.952 -2.01795 2.9893 0.002741 0.000000 -5: Optimizing... - 104106 5.03751 -1.98392 3.01103 0.001787 0.000000 -5: Optimizing... \ 107109 4.99588 -2.01745 3.03576 0.001600 0.000000 -5: Optimizing... - 110112 5.03279 -2.01819 2.99109 0.001485 0.000000 -5: Optimizing... / 113115 4.98703 -2.01223 3.00096 0.000319 0.000000 -5: Optimizing... - 116118 4.98703 -2.01223 3.00096 0.000319 0.000000 -5: Optimizing... \ 119121 4.98703 -2.01223 3.00096 0.000319 0.000000 -5: Optimizing... - 122124 4.98703 -2.01223 3.00096 0.000319 0.000000 -5: Optimizing... / 125126 5.00769 -2.00495 3.01147 0.000215 0.000000 -5: Optimizing... \ 127129 5.00769 -2.00495 3.01147 0.000215 0.000000 -5: Optimizing... - 130132 4.99637 -2.00775 2.99101 0.000154 0.000000 -5: Optimizing... / 133135 5.00578 -1.99641 3.00255 0.000053 0.000000 -5: Optimizing... - 136138 4.99421 -2.00165 3.00224 0.000041 0.000000 -5: Optimizing... \ 139141 4.99421 -2.00165 3.00224 0.000041 0.000000 -5: Optimizing... - 142144 4.99872 -2.00412 2.99714 0.000027 0.000000 -5: Optimizing... / 145147 5.00225 -1.99974 3.00201 0.000009 0.000000 -5: Optimizing... - 148150 5.00225 -1.99974 3.00201 0.000009 0.000000 -5: Optimizing... \ 151153 5.00225 -1.99974 3.00201 0.000009 0.000000 -5: Optimizing... - 154156 4.99944 -2.00277 2.9996 0.000008 0.000000 -5: Optimizing... / 157158 4.99858 -2.00031 2.99929 0.000003 0.000000 -5: Optimizing... \ 159161 4.99858 -2.00031 2.99929 0.000003 0.000000 -5: Optimizing... - 162164 5.00126 -2.00038 3.00068 0.000002 0.000000 -5: Optimizing... / 165167 5.00127 -2.00056 2.99951 0.000002 0.000000 -5: Optimizing... - 168170 5.00083 -1.99924 2.99994 0.000001 0.000000 -5: Optimizing... \ 171172 4.99985 -2.00018 2.99967 0.000000 0.000000 -5: Optimizing... / 173175 4.99985 -2.00018 2.99967 0.000000 0.000000 -5: Optimizing... - 176178 4.99985 -2.00018 2.99967 0.000000 0.000000 -5: Optimizing... \ 179181 4.99985 -2.00018 2.99967 0.000000 0.000000 -5: Optimizing... - 182183 4.99985 -2.00018 2.99967 0.000000 0.000000 -5: Optimizing... - 184186 4.99985 -2.00018 2.99967 0.000000 0.000000 -5: Optimizing... \ 187188 5.00032 -2.00015 3.00002 0.000000 0.000000 -5: Optimizing... / 189191 5.00032 -2.00015 3.00002 0.000000 0.000000 -5: Optimizing... - 192194 5.00017 -1.99985 2.99974 0.000000 0.000000 -5: Optimizing... \ 195197 4.99996 -2.00008 2.99983 0.000000 0.000000 -5: Optimizing... - 198200 4.99994 -1.99998 3.00005 0.000000 0.000000 -5: Optimizing... / 201203 4.99994 -1.99998 3.00005 0.000000 0.000000 -5: Optimizing... - 204206 4.99994 -1.99998 3.00005 0.000000 0.000000 -5: Optimizing... \ 207209 4.99994 -1.99998 3.00005 0.000000 0.000000 -5: Optimizing... - 210212 4.99994 -1.99998 3.00005 0.000000 0.000000 -5: Optimizing... / 213214 5.00001 -1.99999 2.99994 0.000000 0.000000 -5: Optimizing... \ 215217 5.00001 -1.99999 2.99994 0.000000 0.000000 -5: Optimizing... - 218220 5.00003 -2.00002 2.99999 0.000000 0.000000 -5: Optimizing... / 221223 4.99998 -1.99998 3.00002 0.000000 0.000000 -5: Optimizing... - 224226 4.99998 -1.99998 3.00002 0.000000 0.000000 -5: Optimizing... \ 227228 5.00001 -1.99999 2.99998 0.000000 0.000000 -5: Optimizing... / 229231 5.00001 -1.99999 2.99998 0.000000 0.000000 -5: Optimizing... - 232234 5.00001 -2.00001 2.99999 0.000000 0.000000 -5: Optimizing... \ 235237 4.99999 -1.99999 3 0.000000 0.000000 -5: Optimizing... - 238239 4.99999 -1.99999 3 0.000000 0.000000 -5: Optimizing... - 240241 4.99999 -1.99999 3 0.000000 0.000000 -5: Optimizing... - 242244 4.99999 -1.99999 3 0.000000 0.000000 -5: Optimizing... / 245247 5 -2 3 0.000000 0.000000 -5: Optimizing... - 248250 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 251253 5 -2 3 0.000000 0.000000 -5: Optimizing... - 254255 5 -2 3 0.000000 0.000000 -5: Optimizing... - 256258 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 259261 5 -2 3 0.000000 0.000000 -5: Optimizing... - 262264 5 -2 3 0.000000 0.000000 -5: Optimizing... / 265267 5 -2 3 0.000000 0.000000 -5: Optimizing... - 268270 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 271273 5 -2 3 0.000000 0.000000 -5: Optimizing... - 274276 5 -2 3 0.000000 0.000000 -5: Optimizing... / 277279 5 -2 3 0.000000 0.000000 -5: Optimizing... - 280281 5 -2 3 0.000000 0.000000 -5: Optimizing... - 282283 5 -2 3 0.000000 0.000000 -5: Optimizing... - 284286 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 287289 5 -2 3 0.000000 0.000000 -5: Optimizing... - 290292 5 -2 3 0.000000 0.000000 -5: Optimizing... / 293294 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 295297 5 -2 3 0.000000 0.000000 -5: Optimizing... - 298300 5 -2 3 0.000000 0.000000 -5: Optimizing... / 301303 5 -2 3 0.000000 0.000000 -5: Optimizing... - 304306 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 307309 5 -2 3 0.000000 0.000000 -5: Optimizing... - 310312 5 -2 3 0.000000 0.000000 -5: Optimizing... / 313315 5 -2 3 0.000000 0.000000 -5: Optimizing... - 316318 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 319321 5 -2 3 0.000000 0.000000 -5: Optimizing... - 322323 5 -2 3 0.000000 0.000000 -5: Optimizing... - 324326 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 327329 5 -2 3 0.000000 0.000000 -5: Optimizing... - 330332 5 -2 3 0.000000 0.000000 -5: Optimizing... / 333334 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 335337 5 -2 3 0.000000 0.000000 -5: Optimizing... - 338340 5 -2 3 0.000000 0.000000 -5: Optimizing... / 341343 5 -2 3 0.000000 0.000000 -5: Optimizing... - 344346 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 347349 5 -2 3 0.000000 0.000000 -5: Optimizing... - 350352 5 -2 3 0.000000 0.000000 -5: Optimizing... / 353355 5 -2 3 0.000000 0.000000 -5: Optimizing... - 356357 5 -2 3 0.000000 0.000000 -5: Optimizing... - 358360 5 -2 3 0.000000 0.000000 -5: Optimizing... / 361363 5 -2 3 0.000000 0.000000 -5: Optimizing... - 364366 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 367369 5 -2 3 0.000000 0.000000 -5: Optimizing... - 370372 5 -2 3 0.000000 0.000000 -5: Optimizing... / 373374 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 375377 5 -2 3 0.000000 0.000000 -5: Optimizing... - 378380 5 -2 3 0.000000 0.000000 -5: Optimizing... / 381383 5 -2 3 0.000000 0.000000 -5: Optimizing... - 384386 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 387389 5 -2 3 0.000000 0.000000 -5: Optimizing... - 390392 5 -2 3 0.000000 0.000000 -5: Optimizing... / 393395 5 -2 3 0.000000 0.000000 -5: Optimizing... - 396398 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 399401 5 -2 3 0.000000 0.000000 -5: Optimizing... - 402404 5 -2 3 0.000000 0.000000 -5: Optimizing... / 405407 5 -2 3 0.000000 0.000000 -5: Optimizing... - 408410 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 411413 5 -2 3 0.000000 0.000000 -5: Optimizing... - 414416 5 -2 3 0.000000 0.000000 -5: Optimizing... / 417419 5 -2 3 0.000000 0.000000 -5: Optimizing... - 420422 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 423424 5 -2 3 0.000000 0.000000 -5: Optimizing... / 425427 5 -2 3 0.000000 0.000000 -5: Optimizing... - 428430 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 431432 5 -2 3 0.000000 0.000000 -5: Optimizing... / 433435 5 -2 3 0.000000 0.000000 -5: Optimizing... - 436438 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 439441 5 -2 3 0.000000 0.000000 -5: Optimizing... - 442444 5 -2 3 0.000000 0.000000 -5: Optimizing... / 445447 5 -2 3 0.000000 0.000000 -5: Optimizing... - 448450 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 451453 5 -2 3 0.000000 0.000000 -5: Optimizing... - 454456 5 -2 3 0.000000 0.000000 -5: Optimizing... / 457458 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 459460 5 -2 3 0.000000 0.000000 -5: Optimizing... / 461462 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 463465 5 -2 3 0.000000 0.000000 -5: Optimizing... - 466468 5 -2 3 0.000000 0.000000 -5: Optimizing... / 469471 5 -2 3 0.000000 0.000000 -5: Optimizing... - 472474 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 475477 5 -2 3 0.000000 0.000000 -5: Optimizing... - 478480 5 -2 3 0.000000 0.000000 -5: Optimizing... / 481483 5 -2 3 0.000000 0.000000 -5: Optimizing... - 484486 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 487489 5 -2 3 0.000000 0.000000 -5: Optimizing... - 490492 5 -2 3 0.000000 0.000000 -5: Optimizing... / 493494 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 495497 5 -2 3 0.000000 0.000000 -5: Optimizing... - 498500 5 -2 3 0.000000 0.000000 -5: Optimizing... / 501503 5 -2 3 0.000000 0.000000 -5: Optimizing... - 504506 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 507509 5 -2 3 0.000000 0.000000 -5: Optimizing... - 510512 5 -2 3 0.000000 0.000000 -5: Optimizing... / 513515 5 -2 3 0.000000 0.000000 -5: Optimizing... - 516518 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 519520 5 -2 3 0.000000 0.000000 -5: Optimizing... / 521523 5 -2 3 0.000000 0.000000 -5: Optimizing... - 524526 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 527529 5 -2 3 0.000000 0.000000 -5: Optimizing... - 530532 5 -2 3 0.000000 0.000000 -5: Optimizing... / 533535 5 -2 3 0.000000 0.000000 -5: Optimizing... - 536538 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 539541 5 -2 3 0.000000 0.000000 -5: Optimizing... - 542544 5 -2 3 0.000000 0.000000 -5: Optimizing... / 545547 5 -2 3 0.000000 0.000000 -5: Optimizing... - 548549 5 -2 3 0.000000 0.000000 -5: Optimizing... - 550551 5 -2 3 0.000000 0.000000 -5: Optimizing... - 552554 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 555557 5 -2 3 0.000000 0.000000 -5: Optimizing... - 558560 5 -2 3 0.000000 0.000000 -5: Optimizing... / 561563 5 -2 3 0.000000 0.000000 -5: Optimizing... - 564566 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 567569 5 -2 3 0.000000 0.000000 -5: Optimizing... - 570572 5 -2 3 0.000000 0.000000 -5: Optimizing... / 573581 5 -2 3 0.000000 0.000000 -5: Optimizing... - 582584 5 -2 3 0.000000 0.000000 -5: Optimizing... / 585587 5 -2 3 0.000000 0.000000 -5: Optimizing... - 588589 5 -2 3 0.000000 0.000000 -5: Optimizing... - 590592 5 -2 3 0.000000 0.000000 -5: Optimizing... / 593595 5 -2 3 0.000000 0.000000 -5: Optimizing... - 596598 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 599601 5 -2 3 0.000000 0.000000 -5: Optimizing... - 602604 5 -2 3 0.000000 0.000000 -5: Optimizing... / 605607 5 -2 3 0.000000 0.000000 -5: Optimizing... - 608610 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 611613 5 -2 3 0.000000 0.000000 -5: Optimizing... - 614616 5 -2 3 0.000000 0.000000 -5: Optimizing... / 617619 5 -2 3 0.000000 0.000000 -5: Optimizing... - 620621 5 -2 3 0.000000 0.000000 -5: Optimizing... - 622624 5 -2 3 0.000000 0.000000 -5: Optimizing... / 625626 5 -2 3 0.000000 0.000000 -5: Optimizing... \ 627629 5 -2 3 0.000000 0.000000 -5: x=5.000000 -5: y=-2.000000 -5: z=3.000000 -5: f=0.000000 -5: 0.00000000000000222045 - 3/19 Test #4: test_distributions ............... Passed 0.03 sec - 4/19 Test #5: test_downhill .................... Passed 0.03 sec -test 6 - Start 6: test_eigen - -6: Test command: /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/test_eigen -6: Working Directory: /build/reproducible-path/libbpp-core-2.4.1/test -6: Test timeout computed to be: 1500 -test 7 - Start 7: test_gradient - -7: Test command: /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/test_gradient -7: Working Directory: /build/reproducible-path/libbpp-core-2.4.1/test -7: Test timeout computed to be: 1500 6: M= 6: 2x2 6: [ @@ -3640,30 +3675,30 @@ 6: [2.3, 1.4] 6: [5, -0.9] 6: ] - 5/19 Test #6: test_eigen ....................... Passed 0.01 sec -7: 38 -7: Step x y z Function Time -7: 0 0 0 0 38.000000 0.000000 -7: Optimizing... / 17 5 -2 3 0.000000 0.000000 -7: Optimizing... - 814 5 -2 3 0.000000 0.000000 -7: x=5.000000 -7: y=-2.000000 -7: z=3.000000 -7: f=0.000000 -7: 0.00000000000171640480 + 4/19 Test #4: test_distributions ............... Passed 0.12 sec + 5/19 Test #6: test_eigen ....................... Passed 0.05 sec test 8 Start 8: test_graphObs 8: Test command: /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/test_graphObs 8: Working Directory: /build/reproducible-path/libbpp-core-2.4.1/test 8: Test timeout computed to be: 1500 - 6/19 Test #7: test_gradient .................... Passed 0.01 sec test 9 Start 9: test_matrices 9: Test command: /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/test_matrices 9: Working Directory: /build/reproducible-path/libbpp-core-2.4.1/test 9: Test timeout computed to be: 1500 +7: 38 +7: Step x y z Function Time +7: 0 0 0 0 38.000000 0.000000 +7: Optimizing... / 17 5 -2 3 0.000000 0.000000 +7: Optimizing... - 814 5 -2 3 0.000000 0.000000 +7: x=5.000000 +7: y=-2.000000 +7: z=3.000000 +7: f=0.000000 +7: 0.00000000000171640480 8: Creating node zero. 8: digraph myTestDirGrObs { 8: 0; @@ -3721,13 +3756,20 @@ 8: 3 8: 4 8: - 7/19 Test #8: test_graphObs .................... Passed 0.01 sec + 6/19 Test #7: test_gradient .................... Passed 0.07 sec + 7/19 Test #8: test_graphObs .................... Passed 0.03 sec test 10 Start 10: test_mva 10: Test command: /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/test_mva 10: Working Directory: /build/reproducible-path/libbpp-core-2.4.1/test 10: Test timeout computed to be: 1500 +test 11 + Start 11: test_numconstants + +11: Test command: /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/test_numconstants +11: Working Directory: /build/reproducible-path/libbpp-core-2.4.1/test +11: Test timeout computed to be: 1500 9: 2x2 9: [ 9: [2.3, 1.4] @@ -3744,13 +3786,6 @@ 9: [10.24, 25.81] 9: ] 9: Test passed............................: yes - 8/19 Test #9: test_matrices .................... Passed 0.01 sec -test 11 - Start 11: test_numconstants - -11: Test command: /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/test_numconstants -11: Working Directory: /build/reproducible-path/libbpp-core-2.4.1/test -11: Test timeout computed to be: 1500 10: 10: First test for the Pca class, with a square matrix : 10: @@ -3812,17 +3847,8 @@ 10: ] 10: 10: -11: Min double :2.22507e-308 -11: Max double :1.79769e+308 -11: bpp::NumConstants::INF() :inf -11: bpp::NumConstants::MINF() :-inf -11: bpp::NumConstants::PINF() :inf -11: bpp::NumConstants::NaNF() :nan -11: Compiler implements infinity :yes -11: Compiler implements quiet nan :yes -11: Compiler implements signaling nan :yes - 9/19 Test #10: test_mva ......................... Passed 0.01 sec -10/19 Test #11: test_numconstants ................ Passed 0.01 sec + 8/19 Test #9: test_matrices .................... Passed 0.04 sec + 9/19 Test #10: test_mva ......................... Passed 0.02 sec test 12 Start 12: test_powell @@ -3835,6 +3861,15 @@ 13: Test command: /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/test_range 13: Working Directory: /build/reproducible-path/libbpp-core-2.4.1/test 13: Test timeout computed to be: 1500 +11: Min double :2.22507e-308 +11: Max double :1.79769e+308 +11: bpp::NumConstants::INF() :inf +11: bpp::NumConstants::MINF() :-inf +11: bpp::NumConstants::PINF() :inf +11: bpp::NumConstants::NaNF() :nan +11: Compiler implements infinity :yes +11: Compiler implements quiet nan :yes +11: Compiler implements signaling nan :yes 12: 38 12: Step x y z Function Time 12: 0 0 0 0 38.000000 0.000000 @@ -3845,7 +3880,20 @@ 12: z=3.000000 12: f=0.000000 12: 0.00000000000050093263 -11/19 Test #12: test_powell ...................... Passed 0.01 sec +10/19 Test #11: test_numconstants ................ Passed 0.04 sec +11/19 Test #12: test_powell ...................... Passed 0.02 sec +test 14 + Start 14: test_reparametrization + +14: Test command: /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/test_reparametrization +14: Working Directory: /build/reproducible-path/libbpp-core-2.4.1/test +14: Test timeout computed to be: 1500 +test 15 + Start 15: test_sample + +15: Test command: /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/test_sample +15: Working Directory: /build/reproducible-path/libbpp-core-2.4.1/test +15: Test timeout computed to be: 1500 13: 13: ..:: Definitions ::.. 13: r1: [3,6[ @@ -3921,12 +3969,6 @@ 13: 13: ..:: RangeSet ::.. 13: { } -test 14 - Start 14: test_reparametrization - -14: Test command: /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/test_reparametrization -14: Working Directory: /build/reproducible-path/libbpp-core-2.4.1/test -14: Test timeout computed to be: 1500 13: Adding [10,13[ 13: { [10,13[ } 13: Adding [18,21[ @@ -3943,17 +3985,17 @@ 13: { [9,11[ [10,13[ [18,21[ [19,24[ } 13: Adding [0,50[ 13: { [0,50[ [9,11[ [10,13[ [18,21[ [19,24[ } -12/19 Test #13: test_range ....................... Passed 0.02 sec -test 15 - Start 15: test_sample - -15: Test command: /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/test_sample -15: Working Directory: /build/reproducible-path/libbpp-core-2.4.1/test -15: Test timeout computed to be: 1500 +12/19 Test #13: test_range ....................... Passed 0.04 sec 14: Parameter x was tanh transformed: 0->-0.972955 14: Parameter y was tanh transformed: 0->0 14: Step x y Function Time 14: 0 -0.972955 0 1.000000 0.000000 +test 16 + Start 16: test_simplex + +16: Test command: /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/test_simplex +16: Working Directory: /build/reproducible-path/libbpp-core-2.4.1/test +16: Test timeout computed to be: 1500 14: Optimizing... / 118 0.035733 -0.414187 -1.999996 0.000000 14: Optimizing... \ 1933 0.0354138 -0.414986 -2.000000 0.000000 14: Optimizing... - 3450 0.035413 -0.414987 -2.000000 0.000000 @@ -3961,19 +4003,25 @@ 14: y=-1.570796 14: f=-2.000000 14: 0.00000066478104843171 -13/19 Test #14: test_reparametrization ........... Passed 0.01 sec -test 16 - Start 16: test_simplex - -16: Test command: /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/test_simplex -16: Working Directory: /build/reproducible-path/libbpp-core-2.4.1/test -16: Test timeout computed to be: 1500 15: -*- Check without replacement -*- -15: A 1959 0.1959 0.2 -15: B 1978 0.1978 0.2 -15: C 2041 0.2041 0.2 -15: D 2044 0.2044 0.2 -15: E 1978 0.1978 0.2 +15: A 2021 0.2021 0.2 +15: B 2034 0.2034 0.2 +15: C 2028 0.2028 0.2 +15: D 2037 0.2037 0.2 +15: E 1880 0.188 0.2 +15: --------------------------------------- +13/19 Test #14: test_reparametrization ........... Passed 0.05 sec +test 17 + Start 17: test_stats + +17: Test command: /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/test_stats +17: Working Directory: /build/reproducible-path/libbpp-core-2.4.1/test +17: Test timeout computed to be: 1500 +15: A 4054 0.4054 0.4 +15: B 3981 0.3981 0.4 +15: C 4055 0.4055 0.4 +15: D 4048 0.4048 0.4 +15: E 3862 0.3862 0.4 15: --------------------------------------- 16: Method 1 16: 0.1 0.222222 0.428571 0.375 0.4 0.333333 @@ -3988,91 +4036,53 @@ 16: prob 0.1 0.2 0.3 0.15 0.1 0.05 0.1 16: Method 3 16: prob 0.1 0.2 0.3 0.15 0.1 0.05 0.1 -14/19 Test #16: test_simplex ..................... Passed 0.01 sec -test 17 - Start 17: test_stats +14/19 Test #16: test_simplex ..................... Passed 0.05 sec +test 18 + Start 18: test_text_tools -17: Test command: /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/test_stats -17: Working Directory: /build/reproducible-path/libbpp-core-2.4.1/test -17: Test timeout computed to be: 1500 -15: A 3971 0.3971 0.4 -15: B 4006 0.4006 0.4 -15: C 4013 0.4013 0.4 -15: D 3991 0.3991 0.4 -15: E 4019 0.4019 0.4 -15: --------------------------------------- +18: Test command: /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/test_text_tools +18: Working Directory: /build/reproducible-path/libbpp-core-2.4.1/test +18: Test timeout computed to be: 1500 17: 54 83 17: 15 46 44 32 17: 2x4 17: [ -17: [10, 16, 15, 13] -17: [5, 30, 29, 19] +17: [5, 16, 22, 11] +17: [10, 30, 22, 21] 17: ] 17: 10.7369 0.0132372 -15: A 5891 0.5891 0.6 -15: B 6023 0.6023 0.6 -15: C 6024 0.6024 0.6 -15: D 6017 0.6017 0.6 -15: E 6045 0.6045 0.6 -15: --------------------------------------- -15: A 8073 0.8073 0.8 -15: B 7979 0.7979 0.8 -15: C 7985 0.7985 0.8 -15: D 7965 0.7965 0.8 -15: E 7998 0.7998 0.8 -15: --------------------------------------- -15: -*- Check with replacement -*- -15: A 1941 0.1941 0.2 -15: B 2068 0.2068 0.2 -15: C 1974 0.1974 0.2 -15: D 2040 0.204 0.2 -15: E 1977 0.1977 0.2 -15: --------------------------------------- -15: A 4015 0.4015 0.4 -15: B 4040 0.404 0.4 -15: C 3988 0.3988 0.4 -15: D 4034 0.4034 0.4 -15: E 3923 0.3923 0.4 -15: --------------------------------------- -17: 10.7369 0.0132493 -15/19 Test #17: test_stats ....................... Passed 0.03 sec -test 18 - Start 18: test_text_tools - -18: Test command: /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/test_text_tools -18: Working Directory: /build/reproducible-path/libbpp-core-2.4.1/test -18: Test timeout computed to be: 1500 -15: A 6026 0.6026 0.6 -15: B 6043 0.6043 0.6 -15: C 6021 0.6021 0.6 -15: D 6044 0.6044 0.6 -15: E 5866 0.5866 0.6 +15: A 6000 0.6 0.6 +15: B 6035 0.6035 0.6 +15: C 5954 0.5954 0.6 +15: D 6013 0.6013 0.6 +15: E 5998 0.5998 0.6 15: --------------------------------------- 18: [doctest] doctest version is "1.1.4" 18: [doctest] run with "--help" for options 18: =============================================================================== 18: [doctest] test cases: 8 | 8 passed | 0 failed | 0 skipped 18: [doctest] assertions: 80 | 80 passed | 0 failed | -16/19 Test #18: test_text_tools .................. Passed 0.01 sec +15/19 Test #18: test_text_tools .................. Passed 0.04 sec test 19 Start 19: test_treeGraphObs 19: Test command: /build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf/test/test_treeGraphObs 19: Working Directory: /build/reproducible-path/libbpp-core-2.4.1/test 19: Test timeout computed to be: 1500 -15: A 8101 0.8101 0.8 -15: B 7906 0.7906 0.8 -15: C 8193 0.8193 0.8 -15: D 7953 0.7953 0.8 -15: E 7847 0.7847 0.8 +15: A 8034 0.8034 0.8 +15: B 7961 0.7961 0.8 +15: C 8047 0.8047 0.8 +15: D 7963 0.7963 0.8 +15: E 7995 0.7995 0.8 15: --------------------------------------- -15: -*- Check with replacement and weights -*- -15: A 1161 0.1161 0.125 -15: B 1815 0.1815 0.1875 -15: C 5138 0.5138 0.5 -15: D 1237 0.1237 0.125 -15: E 649 0.0649 0.0625 +15: -*- Check with replacement -*- +15: A 2066 0.2066 0.2 +15: B 1959 0.1959 0.2 +15: C 2001 0.2001 0.2 +15: D 2013 0.2013 0.2 +15: E 1961 0.1961 0.2 15: --------------------------------------- +17: 10.7369 0.0130493 19: Creating node zero. 19: digraph myTestDirGrObs { 19: 0; @@ -4138,6 +4148,7 @@ 19: Is this a tree? 19: FALSE 19: Reroot on one +16/19 Test #17: test_stats ....................... Passed 0.10 sec 19: First undirect the tree. 19: graph undirected { 19: 0 -- 1 -- 2 -- 4; @@ -4161,36 +4172,61 @@ 19: Is this a tree? 19: FALSE 19: Test passed -17/19 Test #19: test_treeGraphObs ................ Passed 0.01 sec -15: A 2504 0.1252 0.125 -15: B 3747 0.18735 0.1875 -15: C 10104 0.5052 0.5 -15: D 2421 0.12105 0.125 -15: E 1224 0.0612 0.0625 +15: A 4056 0.4056 0.4 +15: B 4046 0.4046 0.4 +15: C 3926 0.3926 0.4 +15: D 3941 0.3941 0.4 +15: E 4031 0.4031 0.4 +15: --------------------------------------- +17/19 Test #19: test_treeGraphObs ................ Passed 0.05 sec +15: A 6108 0.6108 0.6 +15: B 5990 0.599 0.6 +15: C 5990 0.599 0.6 +15: D 5901 0.5901 0.6 +15: E 6011 0.6011 0.6 +15: --------------------------------------- +15: A 8014 0.8014 0.8 +15: B 7886 0.7886 0.8 +15: C 7878 0.7878 0.8 +15: D 8147 0.8147 0.8 +15: E 8075 0.8075 0.8 +15: --------------------------------------- +15: -*- Check with replacement and weights -*- +15: A 1230 0.123 0.125 +15: B 1907 0.1907 0.1875 +15: C 4993 0.4993 0.5 +15: D 1276 0.1276 0.125 +15: E 594 0.0594 0.0625 +15: --------------------------------------- +15: A 2440 0.122 0.125 +15: B 3704 0.1852 0.1875 +15: C 10098 0.5049 0.5 +15: D 2478 0.1239 0.125 +15: E 1280 0.064 0.0625 15: --------------------------------------- -15: A 3677 0.122567 0.125 -15: B 5588 0.186267 0.1875 -15: C 14994 0.4998 0.5 -15: D 3868 0.128933 0.125 -15: E 1873 0.0624333 0.0625 +15: A 3813 0.1271 0.125 +15: B 5527 0.184233 0.1875 +15: C 15101 0.503367 0.5 +15: D 3700 0.123333 0.125 +15: E 1859 0.0619667 0.0625 15: --------------------------------------- -15: A 5040 0.126 0.125 -15: B 7531 0.188275 0.1875 -15: C 20006 0.50015 0.5 -15: D 4952 0.1238 0.125 -15: E 2471 0.061775 0.0625 +15: A 5054 0.12635 0.125 +15: B 7480 0.187 0.1875 +15: C 19821 0.495525 0.5 +15: D 5124 0.1281 0.125 +15: E 2521 0.063025 0.0625 15: --------------------------------------- -18/19 Test #15: test_sample ...................... Passed 0.12 sec -19/19 Test #3: test_derivative1 ................. Passed 0.84 sec +18/19 Test #15: test_sample ...................... Passed 0.28 sec +19/19 Test #3: test_derivative1 ................. Passed 1.29 sec 100% tests passed, 0 tests failed out of 19 -Total Test time (real) = 0.85 sec +Total Test time (real) = 1.35 sec make[1]: Leaving directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install - cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/reproducible-path/libbpp-core-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/reproducible-path/libbpp-core-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/libbpp-core-2.4.1 -B/build/reproducible-path/libbpp-core-2.4.1/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -4207,175 +4243,175 @@ -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-core.so.4 -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-core.so -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/BppString.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Text +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Text/StringTokenizer.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Text/KeyvalTools.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Text/TextTools.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Text/NestedStringTokenizer.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graph +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graph/AssociationGraphImplObserver.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graph/AssociationTreeGraphObserver.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graph/AssociationDAGraphObserver.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graph/DAGraph.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graph/Graph.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graph/GraphObserver.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graph/TreeGraph.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graph/AssociationGraphObserver.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graph/GlobalGraph.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graph/TreeGraphImpl.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graph/AssociationTreeGraphImplObserver.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graph/DAGraphImpl.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graph/AssociationDAGraphImplObserver.h -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Version.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/BppBoolean.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Io --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Io/OutputStream.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Io/BppOParametrizableFormat.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Io/IoDiscreteDistributionFactory.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Io/IoParametrizable.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Io/IoFormat.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Io/FileTools.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Io/BppODiscreteDistributionFormat.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Io/IoDiscreteDistribution.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/DefaultColorSet.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Molscript --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Molscript/MolscriptColorSet.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Svg --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Svg/SvgGraphicDevice.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/GraphicDevice.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/ColorSet.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/ColorManager.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Point2D.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Point2DTools.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Latex --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Latex/DvipsColorSet.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Latex/PgfGraphicDevice.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/RgbColor.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Font --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Font/FontManager.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Font/Font.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/ColorTools.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/R --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/R/RColorSet.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Fig --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Fig/XFigGraphicDevice.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Fig/XFigLaTeXFontManager.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Fig/XFigPostscriptFontManager.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/AbstractGraphicDevice.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Clonable.h -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Hmm --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Hmm/AutoCorrelationTransitionMatrix.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Hmm/AbstractHmmTransitionMatrix.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Hmm/HmmEmissionProbabilities.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Hmm/HmmExceptions.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Hmm/HmmStateAlphabet.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Hmm/HmmLikelihood.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Hmm/FullHmmTransitionMatrix.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Hmm/HmmTransitionMatrix.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Table.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Parameter.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Parametrizable.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Number.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/AbstractParameterAliasable.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Matrix +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Matrix/EigenValue.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Matrix/LUDecomposition.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Matrix/MatrixTools.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Matrix/Matrix.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/ParameterExceptions.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/AutoParameter.h -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/NewtonBacktrackOneDimension.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/Optimizer.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/TwoPointsNumericalDerivative.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/SimpleMultiDimensions.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/SimpleNewtonMultiDimensions.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/BfgsMultiDimensions.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/BrentOneDimension.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/OneDimensionOptimizationTools.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/FivePointsNumericalDerivative.h -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/MetaOptimizer.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/AbstractOptimizer.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/DirectionFunction.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/GoldenSectionSearch.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/NewtonOneDimension.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/NewtonBacktrackOneDimension.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/ThreePointsNumericalDerivative.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/FunctionTools.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/ConjugateGradientMultiDimensions.h -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/Operators -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/Operators/NegativeOperator.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/Operators/ConstantOperator.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/Operators/Operator.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/Operators/ComputationTree.h -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/Operators/MathOperator.h -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/Operators/BinaryOperator.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/Operators/ComputationTree.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/Operators/Operator.h -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/Operators/FunctionOperator.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/BrentOneDimension.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/AbstractOptimizer.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/FunctionTools.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/OneDimensionOptimizationTools.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/DirectionFunction.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/BfgsMultiDimensions.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/GoldenSectionSearch.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/ConjugateGradientMultiDimensions.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/ThreePointsNumericalDerivative.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/NewtonOneDimension.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/ReparametrizationFunctionWrapper.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/FivePointsNumericalDerivative.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/Operators/ConstantOperator.h -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/Functions.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/TwoPointsNumericalDerivative.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/Optimizer.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/SimpleNewtonMultiDimensions.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/AbstractNumericalDerivative.h -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/OptimizationStopCondition.h -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/PowellMultiDimensions.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/SimpleMultiDimensions.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/AbstractNumericalDerivative.h -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/DownhillSimplexMethod.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/NumConstants.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Range.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/AbstractParameterAliasable.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/ParameterAliasable.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Constraints.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/TransformedParameter.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/ParametrizableCollection.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Random --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Random/Uniform01WH.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Random/Uniform01QD.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Random/Uniform01K.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Random/ContingencyTableGenerator.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Random/RandomFactory.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Random/RandomTools.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Number.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/AbstractParametrizable.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/ParameterExceptions.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/NumTools.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/VectorExceptions.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/AdaptiveKernelDensityEstimation.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/DataTable.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Function/ReparametrizationFunctionWrapper.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/TableExceptions.h -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Stat -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Stat/StatTest.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Stat/ContingencyTableTest.h -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Stat/StatTools.h -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Stat/Mva +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Stat/Mva/CorrespondenceAnalysis.h -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Stat/Mva/PrincipalComponentAnalysis.h -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Stat/Mva/DualityDiagram.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Stat/Mva/CorrespondenceAnalysis.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Stat/ContingencyTableTest.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/ParameterList.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/TransformedParameter.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/IntegerTools.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/AbstractParametrizable.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/DataTable.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/NumTools.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/VectorExceptions.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Random +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Random/Uniform01K.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Random/RandomTools.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Random/Uniform01QD.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Random/Uniform01WH.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Random/ContingencyTableGenerator.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Random/RandomFactory.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/NumConstants.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Constraints.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/AdaptiveKernelDensityEstimation.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/ParametrizableCollection.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Hmm +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Hmm/FullHmmTransitionMatrix.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Hmm/HmmExceptions.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Hmm/LogsumHmmLikelihood.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Hmm/RescaledHmmLikelihood.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Hmm/HmmTransitionMatrix.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Hmm/AbstractHmmTransitionMatrix.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Hmm/HmmLikelihood.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Hmm/LowMemoryRescaledHmmLikelihood.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Hmm/AutoCorrelationTransitionMatrix.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Hmm/HmmEmissionProbabilities.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Hmm/HmmStateAlphabet.h -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/VectorTools.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Range.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/ParameterAliasable.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/ParameterList.h -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Prob --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Prob/DirichletDiscreteDistribution.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Prob/MultipleDiscreteDistribution.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Prob/BetaDiscreteDistribution.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Prob/InvariantMixedDiscreteDistribution.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Prob/TruncatedExponentialDiscreteDistribution.h -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Prob/MixtureOfDiscreteDistributions.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Prob/GammaDiscreteDistribution.h -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Prob/UniformDiscreteDistribution.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Prob/GaussianDiscreteDistribution.h -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Prob/ConstantDistribution.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Prob/Simplex.h -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Prob/SimpleDiscreteDistribution.h -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Prob/ExponentialDiscreteDistribution.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Prob/TruncatedExponentialDiscreteDistribution.h -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Parametrizable.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Table.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/AutoParameter.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Matrix --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Matrix/Matrix.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Matrix/MatrixTools.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Matrix/LUDecomposition.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Matrix/EigenValue.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/TableExceptions.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/IntegerTools.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Parameter.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Prob/DirichletDiscreteDistribution.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Prob/InvariantMixedDiscreteDistribution.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Prob/BetaDiscreteDistribution.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Prob/MultipleDiscreteDistribution.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Prob/GaussianDiscreteDistribution.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Prob/Simplex.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Numeric/Prob/GammaDiscreteDistribution.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/App +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/App/BppApplication.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/App/NumCalcApplicationTools.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/App/ApplicationTools.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/BppBoolean.h -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/BppVector.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Io +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Io/BppODiscreteDistributionFormat.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Io/IoDiscreteDistributionFactory.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Io/IoFormat.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Io/IoDiscreteDistribution.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Io/BppOParametrizableFormat.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Io/FileTools.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Io/OutputStream.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Io/IoParametrizable.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Clonable.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/BppString.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/DefaultColorSet.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Point2DTools.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Molscript +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Molscript/MolscriptColorSet.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/ColorSet.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/ColorTools.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Font +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Font/FontManager.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Font/Font.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/RgbColor.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Fig +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Fig/XFigGraphicDevice.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Fig/XFigLaTeXFontManager.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Fig/XFigPostscriptFontManager.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/R +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/R/RColorSet.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/AbstractGraphicDevice.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/ColorManager.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/GraphicDevice.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Svg +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Svg/SvgGraphicDevice.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Latex +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Latex/DvipsColorSet.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Latex/PgfGraphicDevice.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graphics/Point2D.h -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Utils --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Utils/MapTools.h -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Utils/AttributesTools.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graph --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graph/TreeGraph.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graph/AssociationDAGraphObserver.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graph/AssociationTreeGraphObserver.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graph/AssociationGraphImplObserver.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graph/TreeGraphImpl.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graph/Graph.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graph/AssociationTreeGraphImplObserver.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graph/DAGraph.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graph/DAGraphImpl.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graph/AssociationGraphObserver.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graph/GlobalGraph.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graph/AssociationDAGraphImplObserver.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Graph/GraphObserver.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/App --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/App/ApplicationTools.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/App/NumCalcApplicationTools.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/App/BppApplication.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Text --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Text/KeyvalTools.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Text/TextTools.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Text/StringTokenizer.h --- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Text/NestedStringTokenizer.h +-- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Utils/MapTools.h -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/include/Bpp/Exceptions.h -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-core/bpp-core-targets.cmake -- Installing: /build/reproducible-path/libbpp-core-2.4.1/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-core/bpp-core-targets-none.cmake @@ -4438,12 +4474,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/12494/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/12494/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/21625 and its subdirectories -I: Current time: Mon Jan 27 17:49:34 -12 2025 -I: pbuilder-time-stamp: 1738043374 +I: removing directory /srv/workspace/pbuilder/12494 and its subdirectories +I: Current time: Tue Jan 28 20:03:30 +14 2025 +I: pbuilder-time-stamp: 1738044210