Diff of the two buildlogs: -- --- b1/build.log 2025-03-03 23:20:42.216593412 +0000 +++ b2/build.log 2025-03-04 23:21:41.691370088 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Mar 3 10:10:52 -12 2025 -I: pbuilder-time-stamp: 1741039852 +I: Current time: Tue Mar 4 13:21:28 +14 2025 +I: pbuilder-time-stamp: 1741044088 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -28,52 +28,84 @@ dpkg-source: info: applying test_skip_missing_modules.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/18709/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/18732/tmp/hooks/D01_modify_environment starting +debug: Running on ff4a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 3 23:21 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/18732/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/18732/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='311e85f5010547f58c12c6fad202919c' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='18709' - PS1='# ' - PS2='> ' + INVOCATION_ID=e1f12501923946909a8a7c737a53a983 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=18732 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.MSsRip1r/pbuilderrc_OtfW --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.MSsRip1r/b1 --logfile b1/build.log mdanalysis_2.8.0-4.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.MSsRip1r/pbuilderrc_g9T4 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.MSsRip1r/b2 --logfile b2/build.log mdanalysis_2.8.0-4.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt64c 6.1.0-31-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-armmp-lpae #1 SMP Debian 6.1.128-1 (2025-02-07) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/18709/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/18732/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -443,7 +475,7 @@ Get: 266 http://deb.debian.org/debian unstable/main armhf python3-sphinx-sitemap all 2.6.0-1 [8508 B] Get: 267 http://deb.debian.org/debian unstable/main armhf python3-sphinxcontrib.bibtex all 2.6.2-1 [32.4 kB] Get: 268 http://deb.debian.org/debian unstable/main armhf python3-tqdm all 4.67.1-2 [91.1 kB] -Fetched 191 MB in 5s (35.9 MB/s) +Fetched 191 MB in 12s (15.7 MB/s) Preconfiguring packages ... Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19508 files and directories currently installed.) @@ -1306,8 +1338,8 @@ Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Mar 3 22:12:54 UTC 2025. -Universal Time is now: Mon Mar 3 22:12:54 UTC 2025. +Local time is now: Mon Mar 3 23:23:54 UTC 2025. +Universal Time is now: Mon Mar 3 23:23:54 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... @@ -1557,7 +1589,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/mdanalysis-2.8.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mdanalysis_2.8.0-4_source.changes +I: user script /srv/workspace/pbuilder/18732/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/18732/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/mdanalysis-2.8.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mdanalysis_2.8.0-4_source.changes dpkg-buildpackage: info: source package mdanalysis dpkg-buildpackage: info: source version 2.8.0-4 dpkg-buildpackage: info: source distribution unstable @@ -1675,213 +1711,211 @@ running build running build_py creating build/lib.linux-armv7l-cpython-313/MDAnalysis -copying MDAnalysis/due.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis -copying MDAnalysis/exceptions.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis -copying MDAnalysis/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis copying MDAnalysis/authors.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis +copying MDAnalysis/exceptions.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis copying MDAnalysis/units.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis +copying MDAnalysis/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis +copying MDAnalysis/due.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis copying MDAnalysis/version.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis -creating build/lib.linux-armv7l-cpython-313/doc/sphinx/source -copying doc/sphinx/source/conf.py -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source +creating build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/DCD.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/MMTF.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/TRJ.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/PQR.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/INPCRD.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/XYZ.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/core.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/ParmEd.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/XTC.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/memory.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/chemfiles.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/TNG.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/chain.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/base.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/TRC.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/GMS.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/TXYZ.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/XDR.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/MOL2.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/NAMDBIN.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/PDBQT.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/GSD.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/GRO.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/DLPoly.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/H5MD.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/FHIAIMS.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/CRD.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/TRR.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/null.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/TRZ.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/DMS.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/LAMMPS.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/PDB.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +creating build/lib.linux-armv7l-cpython-313/MDAnalysis/selections +copying MDAnalysis/selections/jmol.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/selections +copying MDAnalysis/selections/pymol.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/selections +copying MDAnalysis/selections/base.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/selections +copying MDAnalysis/selections/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/selections +copying MDAnalysis/selections/charmm.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/selections +copying MDAnalysis/selections/vmd.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/selections +copying MDAnalysis/selections/gromacs.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/selections creating build/lib.linux-armv7l-cpython-313/MDAnalysis/converters +copying MDAnalysis/converters/OpenMM.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/converters copying MDAnalysis/converters/RDKitParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/converters -copying MDAnalysis/converters/OpenMMParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/converters copying MDAnalysis/converters/ParmEd.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/converters copying MDAnalysis/converters/RDKit.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/converters copying MDAnalysis/converters/base.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/converters -copying MDAnalysis/converters/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/converters -copying MDAnalysis/converters/OpenMM.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/converters copying MDAnalysis/converters/ParmEdParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/converters +copying MDAnalysis/converters/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/converters +copying MDAnalysis/converters/OpenMMParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/converters +creating build/lib.linux-armv7l-cpython-313/MDAnalysis/visualization +copying MDAnalysis/visualization/streamlines.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/visualization +copying MDAnalysis/visualization/streamlines_3D.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/visualization +copying MDAnalysis/visualization/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/visualization +creating build/lib.linux-armv7l-cpython-313/MDAnalysis/tests +copying MDAnalysis/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/tests +copying MDAnalysis/tests/datafiles.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/tests creating build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/helix_analysis.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/atomicdistances.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/dihedrals.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/gnm.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/lineardensity.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/dielectric.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/rdf.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/nuclinfo.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/rms.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/backends.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/helix_analysis.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/dielectric.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/waterdynamics.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/leaflet.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/polymer.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/nucleicacids.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/msd.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/align.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/dihedrals.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/bat.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/atomicdistances.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/base.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/density.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/msd.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/rdf.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/results.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/diffusionmap.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/nuclinfo.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/leaflet.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/pca.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/align.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/nucleicacids.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/polymer.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/distances.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/diffusionmap.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/density.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/contacts.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/bat.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/psa.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/rms.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/pca.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/gnm.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis +creating build/lib.linux-armv7l-cpython-313/MDAnalysis/auxiliary +copying MDAnalysis/auxiliary/core.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/auxiliary +copying MDAnalysis/auxiliary/base.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/auxiliary +copying MDAnalysis/auxiliary/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/auxiliary +copying MDAnalysis/auxiliary/XVG.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/auxiliary +copying MDAnalysis/auxiliary/EDR.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/auxiliary +creating build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations +copying MDAnalysis/transformations/nojump.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations +copying MDAnalysis/transformations/fit.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations +copying MDAnalysis/transformations/positionaveraging.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations +copying MDAnalysis/transformations/translate.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations +copying MDAnalysis/transformations/base.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations +copying MDAnalysis/transformations/rotate.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations +copying MDAnalysis/transformations/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations +copying MDAnalysis/transformations/wrap.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations +copying MDAnalysis/transformations/boxdimensions.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations creating build/lib.linux-armv7l-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/GROParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/GMSParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/MMTFParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/CRDParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/HoomdXMLParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/PDBParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/ITPParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/TOPParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/XYZParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/MinimalParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/PSFParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/PQRParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/GMSParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/TPRParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/core.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/MMTFParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/ExtendedPDBParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/PDBQTParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/base.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/PSFParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/ParmEdParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/DLPolyParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/TXYZParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/FHIAIMSParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/CRDParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/GSDParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/core.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/TPRParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/DMSParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/LAMMPSParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/ExtendedPDBParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/ParmEdParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/HoomdXMLParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/GSDParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/MOL2Parser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/tables.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/guessers.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology -creating build/lib.linux-armv7l-cpython-313/MDAnalysis/guesser -copying MDAnalysis/guesser/default_guesser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/guesser -copying MDAnalysis/guesser/base.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/guesser -copying MDAnalysis/guesser/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/guesser -copying MDAnalysis/guesser/tables.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/guesser -creating build/lib.linux-armv7l-cpython-313/MDAnalysis/visualization -copying MDAnalysis/visualization/streamlines_3D.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/visualization -copying MDAnalysis/visualization/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/visualization -copying MDAnalysis/visualization/streamlines.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/visualization -creating build/lib.linux-armv7l-cpython-313/MDAnalysis/tests -copying MDAnalysis/tests/datafiles.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/tests -copying MDAnalysis/tests/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/tests -creating build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations -copying MDAnalysis/transformations/wrap.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations -copying MDAnalysis/transformations/rotate.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations -copying MDAnalysis/transformations/positionaveraging.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations -copying MDAnalysis/transformations/base.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations -copying MDAnalysis/transformations/fit.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations -copying MDAnalysis/transformations/translate.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations -copying MDAnalysis/transformations/nojump.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations -copying MDAnalysis/transformations/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations -copying MDAnalysis/transformations/boxdimensions.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations -creating build/lib.linux-armv7l-cpython-313/MDAnalysis/core -copying MDAnalysis/core/selection.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/core -copying MDAnalysis/core/topologyobjects.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/core -copying MDAnalysis/core/groups.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/core -copying MDAnalysis/core/topology.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/core -copying MDAnalysis/core/universe.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/core -copying MDAnalysis/core/accessors.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/core -copying MDAnalysis/core/topologyattrs.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/core -copying MDAnalysis/core/_get_readers.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/core -copying MDAnalysis/core/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/core +copying MDAnalysis/topology/tables.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/MinimalParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/XYZParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/TOPParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/GROParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/LAMMPSParser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology creating build/lib.linux-armv7l-cpython-313/MDAnalysis/lib -copying MDAnalysis/lib/transformations.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib +copying MDAnalysis/lib/mdamath.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/NeighborSearch.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib -copying MDAnalysis/lib/picklable_file_io.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib -copying MDAnalysis/lib/_distopia.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/correlations.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib -copying MDAnalysis/lib/log.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib -copying MDAnalysis/lib/mdamath.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/pkdtree.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib -copying MDAnalysis/lib/distances.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib +copying MDAnalysis/lib/transformations.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib +copying MDAnalysis/lib/log.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib +copying MDAnalysis/lib/distances.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib +copying MDAnalysis/lib/picklable_file_io.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib +copying MDAnalysis/lib/_distopia.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/util.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib -creating build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/CRD.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/PQR.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/PDB.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/DCD.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/TRR.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/NAMDBIN.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/TNG.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/ParmEd.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/XDR.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/null.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/INPCRD.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/chain.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/GRO.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/DMS.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/TRJ.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/MMTF.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/GSD.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/base.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/memory.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/DLPoly.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/TRZ.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/PDBQT.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/XYZ.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/LAMMPS.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/FHIAIMS.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/TXYZ.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/MOL2.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/core.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/GMS.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/XTC.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/TRC.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/H5MD.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/chemfiles.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -creating build/lib.linux-armv7l-cpython-313/MDAnalysis/selections -copying MDAnalysis/selections/jmol.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/selections -copying MDAnalysis/selections/base.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/selections -copying MDAnalysis/selections/pymol.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/selections -copying MDAnalysis/selections/charmm.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/selections -copying MDAnalysis/selections/gromacs.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/selections -copying MDAnalysis/selections/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/selections -copying MDAnalysis/selections/vmd.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/selections -creating build/lib.linux-armv7l-cpython-313/MDAnalysis/auxiliary -copying MDAnalysis/auxiliary/XVG.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/auxiliary -copying MDAnalysis/auxiliary/base.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/auxiliary -copying MDAnalysis/auxiliary/EDR.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/auxiliary -copying MDAnalysis/auxiliary/core.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/auxiliary -copying MDAnalysis/auxiliary/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/auxiliary +creating build/lib.linux-armv7l-cpython-313/MDAnalysis/core +copying MDAnalysis/core/topology.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/core +copying MDAnalysis/core/universe.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/core +copying MDAnalysis/core/_get_readers.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/core +copying MDAnalysis/core/selection.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/core +copying MDAnalysis/core/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/core +copying MDAnalysis/core/topologyattrs.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/core +copying MDAnalysis/core/groups.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/core +copying MDAnalysis/core/topologyobjects.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/core +copying MDAnalysis/core/accessors.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/core +creating build/lib.linux-armv7l-cpython-313/MDAnalysis/guesser +copying MDAnalysis/guesser/base.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/guesser +copying MDAnalysis/guesser/default_guesser.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/guesser +copying MDAnalysis/guesser/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/guesser +copying MDAnalysis/guesser/tables.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/guesser +creating build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore +copying MDAnalysis/analysis/encore/bootstrap.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore +copying MDAnalysis/analysis/encore/confdistmatrix.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore +copying MDAnalysis/analysis/encore/similarity.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore +copying MDAnalysis/analysis/encore/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore +copying MDAnalysis/analysis/encore/covariance.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore +copying MDAnalysis/analysis/encore/utils.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore creating build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/hbonds copying MDAnalysis/analysis/hbonds/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/hbonds copying MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/hbonds -creating build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/legacy -copying MDAnalysis/analysis/legacy/x3dna.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/legacy -copying MDAnalysis/analysis/legacy/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/legacy creating build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/dssp +copying MDAnalysis/analysis/dssp/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/dssp copying MDAnalysis/analysis/dssp/dssp.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/dssp copying MDAnalysis/analysis/dssp/pydssp_numpy.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/dssp -copying MDAnalysis/analysis/dssp/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/dssp creating build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/hole2 copying MDAnalysis/analysis/hole2/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/hole2 -creating build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore -copying MDAnalysis/analysis/encore/confdistmatrix.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore -copying MDAnalysis/analysis/encore/bootstrap.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore -copying MDAnalysis/analysis/encore/covariance.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore -copying MDAnalysis/analysis/encore/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore -copying MDAnalysis/analysis/encore/similarity.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore -copying MDAnalysis/analysis/encore/utils.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore creating build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/hydrogenbonds copying MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/hydrogenbonds copying MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/hydrogenbonds copying MDAnalysis/analysis/hydrogenbonds/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/hydrogenbonds copying MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/hydrogenbonds +creating build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/legacy +copying MDAnalysis/analysis/legacy/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/legacy +copying MDAnalysis/analysis/legacy/x3dna.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/legacy creating build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/data copying MDAnalysis/analysis/data/filenames.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/data copying MDAnalysis/analysis/data/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/data -creating build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction -copying MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction -copying MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction -copying MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction creating build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering -copying MDAnalysis/analysis/encore/clustering/cluster.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering copying MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering +copying MDAnalysis/analysis/encore/clustering/cluster.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering copying MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering copying MDAnalysis/analysis/encore/clustering/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering +creating build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction +copying MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction +copying MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction +copying MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction creating build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/tpr -copying MDAnalysis/topology/tpr/setting.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/tpr copying MDAnalysis/topology/tpr/obj.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/tpr copying MDAnalysis/topology/tpr/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/tpr copying MDAnalysis/topology/tpr/utils.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/tpr +copying MDAnalysis/topology/tpr/setting.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/tpr creating build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats copying MDAnalysis/lib/formats/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats creating build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/libmdanalysis @@ -1894,6 +1928,8 @@ copying MDAnalysis/lib/formats/include/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include creating build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/src/transformations copying MDAnalysis/lib/src/transformations/__init__.py -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/src/transformations +creating build/lib.linux-armv7l-cpython-313/doc/sphinx/source +copying doc/sphinx/source/conf.py -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source running egg_info creating MDAnalysis.egg-info writing MDAnalysis.egg-info/PKG-INFO @@ -1978,21 +2014,70 @@ adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'MDAnalysis.egg-info/SOURCES.txt' -copying doc/README -> build/lib.linux-armv7l-cpython-313/doc -copying MDAnalysis/analysis/data/janin_ref_data.npy -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/data copying MDAnalysis/analysis/data/rama_ref_data.npy -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/data +copying MDAnalysis/analysis/data/janin_ref_data.npy -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/data +copying doc/README -> build/lib.linux-armv7l-cpython-313/doc +copying MDAnalysis/coordinates/timestep.cpp -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/timestep.pxd -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/timestep.pyx -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/lib/_augment.cpp -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib +copying MDAnalysis/lib/_augment.pyx -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib +copying MDAnalysis/lib/_cutil.cpp -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib +copying MDAnalysis/lib/_cutil.pxd -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib +copying MDAnalysis/lib/_cutil.pyx -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib +copying MDAnalysis/lib/c_distances.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib +copying MDAnalysis/lib/c_distances.pxd -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib +copying MDAnalysis/lib/c_distances.pyx -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib +copying MDAnalysis/lib/c_distances_openmp.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib +copying MDAnalysis/lib/c_distances_openmp.pyx -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib +copying MDAnalysis/lib/nsgrid.cpp -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib +copying MDAnalysis/lib/nsgrid.pyx -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib +copying MDAnalysis/lib/qcprot.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib +copying MDAnalysis/lib/qcprot.pyx -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib +copying MDAnalysis/analysis/encore/cutils.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore +copying MDAnalysis/analysis/encore/cutils.pyx -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore +copying MDAnalysis/analysis/encore/clustering/affinityprop.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering +copying MDAnalysis/analysis/encore/clustering/affinityprop.pyx -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering +copying MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction +copying MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction +creating build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering/src +copying MDAnalysis/analysis/encore/clustering/src/ap.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering/src +creating build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering/include +copying MDAnalysis/analysis/encore/clustering/include/ap.h -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering/include +creating build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/src +copying MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/src +creating build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/include +copying MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/include +copying MDAnalysis/lib/formats/cython_util.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats +copying MDAnalysis/lib/formats/cython_util.pxd -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats +copying MDAnalysis/lib/formats/cython_util.pyx -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats +copying MDAnalysis/lib/formats/libdcd.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats +copying MDAnalysis/lib/formats/libdcd.pxd -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats +copying MDAnalysis/lib/formats/libdcd.pyx -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats +copying MDAnalysis/lib/formats/libmdaxdr.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats +copying MDAnalysis/lib/formats/libmdaxdr.pxd -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats +copying MDAnalysis/lib/formats/libmdaxdr.pyx -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats +copying MDAnalysis/lib/libmdanalysis/__init__.pxd -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/libmdanalysis +copying MDAnalysis/lib/include/calc_distances.h -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/include +copying MDAnalysis/lib/formats/src/trr_seek.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/src +copying MDAnalysis/lib/formats/src/xdrfile.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/src +copying MDAnalysis/lib/formats/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/src +copying MDAnalysis/lib/formats/src/xdrfile_xtc.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/src +copying MDAnalysis/lib/formats/src/xtc_seek.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/src +copying MDAnalysis/lib/formats/include/endianswap.h -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include +copying MDAnalysis/lib/formats/include/fastio.h -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include +copying MDAnalysis/lib/formats/include/readdcd.h -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include +copying MDAnalysis/lib/formats/include/trr_seek.h -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include +copying MDAnalysis/lib/formats/include/xdrfile.h -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include +copying MDAnalysis/lib/formats/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include +copying MDAnalysis/lib/formats/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include +copying MDAnalysis/lib/formats/include/xtc_seek.h -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include +copying MDAnalysis/lib/src/transformations/AUTHOR -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/src/transformations +copying MDAnalysis/lib/src/transformations/LICENCE -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/src/transformations +copying MDAnalysis/lib/src/transformations/transformations.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/src/transformations copying doc/sphinx/Makefile -> build/lib.linux-armv7l-cpython-313/doc/sphinx copying doc/sphinx/source/index.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source copying doc/sphinx/source/references.bib -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source -creating build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images -copying doc/sphinx/source/images/AnalysisBase_parallel.png -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images -copying doc/sphinx/source/images/RSMD_plot.png -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images -copying doc/sphinx/source/images/janin_demo_plot.png -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images -copying doc/sphinx/source/images/janin_ref_plot.png -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images -copying doc/sphinx/source/images/msd_demo_plot.png -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images -copying doc/sphinx/source/images/parallelization_time.png -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images -copying doc/sphinx/source/images/rama_demo_plot.png -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images -copying doc/sphinx/source/images/rama_ref_plot.png -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images creating build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages copying doc/sphinx/source/documentation_pages/analysis_modules.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages copying doc/sphinx/source/documentation_pages/auxiliary_modules.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages @@ -2012,11 +2097,73 @@ copying doc/sphinx/source/documentation_pages/units.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages copying doc/sphinx/source/documentation_pages/version.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages copying doc/sphinx/source/documentation_pages/visualization_modules.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages +creating build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images +copying doc/sphinx/source/images/AnalysisBase_parallel.png -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images +copying doc/sphinx/source/images/RSMD_plot.png -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images +copying doc/sphinx/source/images/janin_demo_plot.png -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images +copying doc/sphinx/source/images/janin_ref_plot.png -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images +copying doc/sphinx/source/images/msd_demo_plot.png -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images +copying doc/sphinx/source/images/parallelization_time.png -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images +copying doc/sphinx/source/images/rama_demo_plot.png -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images +copying doc/sphinx/source/images/rama_ref_plot.png -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images +creating build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/CRD.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/DCD.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/DLPoly.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/DMS.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/FHIAIMS.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/GMS.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/GRO.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/GSD.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/H5MD.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/INPCRD.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/LAMMPS.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/MMTF.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/MOL2.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/NAMDBIN.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/PDB.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/PDBQT.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/PQR.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/TNG.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/TRC.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/TRJ.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/TRR.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/TRZ.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/TXYZ.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/XDR.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/XTC.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/XYZ.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/base.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/chain.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/chemfiles.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/core.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/init.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/memory.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/null.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/pickle_readers.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/timestep.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates +creating build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/selections +copying doc/sphinx/source/documentation_pages/selections/base.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/selections +copying doc/sphinx/source/documentation_pages/selections/charmm.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/selections +copying doc/sphinx/source/documentation_pages/selections/gromacs.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/selections +copying doc/sphinx/source/documentation_pages/selections/jmol.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/selections +copying doc/sphinx/source/documentation_pages/selections/pymol.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/selections +copying doc/sphinx/source/documentation_pages/selections/vmd.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/selections creating build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/converters copying doc/sphinx/source/documentation_pages/converters/OpenMM.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/converters copying doc/sphinx/source/documentation_pages/converters/ParmEd.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/converters copying doc/sphinx/source/documentation_pages/converters/RDKit.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/converters copying doc/sphinx/source/documentation_pages/converters/base.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/converters +creating build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/visualization +copying doc/sphinx/source/documentation_pages/visualization/streamlines.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/visualization +copying doc/sphinx/source/documentation_pages/visualization/streamlines_3D.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/visualization +copying doc/sphinx/source/documentation_pages/visualization/test_streamplot_3D.png -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/visualization +copying doc/sphinx/source/documentation_pages/visualization/testing_streamline.png -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/visualization +creating build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules +copying doc/sphinx/source/documentation_pages/guesser_modules/base.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules +copying doc/sphinx/source/documentation_pages/guesser_modules/default_guesser.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules +copying doc/sphinx/source/documentation_pages/guesser_modules/init.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules +copying doc/sphinx/source/documentation_pages/guesser_modules/tables.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules creating build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/align.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/atomicdistances.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis @@ -2053,11 +2200,21 @@ copying doc/sphinx/source/documentation_pages/analysis/rms.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/waterdynamics.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/wbridge_analysis.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis -creating build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules -copying doc/sphinx/source/documentation_pages/guesser_modules/base.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules -copying doc/sphinx/source/documentation_pages/guesser_modules/default_guesser.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules -copying doc/sphinx/source/documentation_pages/guesser_modules/init.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules -copying doc/sphinx/source/documentation_pages/guesser_modules/tables.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules +creating build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/auxiliary +copying doc/sphinx/source/documentation_pages/auxiliary/EDR.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/auxiliary +copying doc/sphinx/source/documentation_pages/auxiliary/XVG.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/auxiliary +copying doc/sphinx/source/documentation_pages/auxiliary/base.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/auxiliary +copying doc/sphinx/source/documentation_pages/auxiliary/core.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/auxiliary +copying doc/sphinx/source/documentation_pages/auxiliary/init.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/auxiliary +creating build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations +copying doc/sphinx/source/documentation_pages/transformations/base.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations +copying doc/sphinx/source/documentation_pages/transformations/boxdimensions.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations +copying doc/sphinx/source/documentation_pages/transformations/fit.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations +copying doc/sphinx/source/documentation_pages/transformations/nojump.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations +copying doc/sphinx/source/documentation_pages/transformations/positionaveraging.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations +copying doc/sphinx/source/documentation_pages/transformations/rotate.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations +copying doc/sphinx/source/documentation_pages/transformations/translate.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations +copying doc/sphinx/source/documentation_pages/transformations/wrap.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations creating build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/CRDParser.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/DLPolyParser.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology @@ -2087,29 +2244,6 @@ copying doc/sphinx/source/documentation_pages/topology/init.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/tables.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/tpr_util.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology -creating build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/visualization -copying doc/sphinx/source/documentation_pages/visualization/streamlines.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/visualization -copying doc/sphinx/source/documentation_pages/visualization/streamlines_3D.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/visualization -copying doc/sphinx/source/documentation_pages/visualization/test_streamplot_3D.png -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/visualization -copying doc/sphinx/source/documentation_pages/visualization/testing_streamline.png -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/visualization -creating build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations -copying doc/sphinx/source/documentation_pages/transformations/base.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations -copying doc/sphinx/source/documentation_pages/transformations/boxdimensions.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations -copying doc/sphinx/source/documentation_pages/transformations/fit.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations -copying doc/sphinx/source/documentation_pages/transformations/nojump.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations -copying doc/sphinx/source/documentation_pages/transformations/positionaveraging.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations -copying doc/sphinx/source/documentation_pages/transformations/rotate.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations -copying doc/sphinx/source/documentation_pages/transformations/translate.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations -copying doc/sphinx/source/documentation_pages/transformations/wrap.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations -creating build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core -copying doc/sphinx/source/documentation_pages/core/accessors.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core -copying doc/sphinx/source/documentation_pages/core/groups.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core -copying doc/sphinx/source/documentation_pages/core/init.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core -copying doc/sphinx/source/documentation_pages/core/selection.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core -copying doc/sphinx/source/documentation_pages/core/topology.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core -copying doc/sphinx/source/documentation_pages/core/topologyattrs.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core -copying doc/sphinx/source/documentation_pages/core/topologyobjects.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core -copying doc/sphinx/source/documentation_pages/core/universe.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core creating build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib copying doc/sphinx/source/documentation_pages/lib/NeighborSearch.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib copying doc/sphinx/source/documentation_pages/lib/c_distances.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib @@ -2124,57 +2258,15 @@ copying doc/sphinx/source/documentation_pages/lib/qcprot.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib copying doc/sphinx/source/documentation_pages/lib/transformations.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib copying doc/sphinx/source/documentation_pages/lib/util.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib -creating build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/CRD.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/DCD.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/DLPoly.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/DMS.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/FHIAIMS.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/GMS.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/GRO.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/GSD.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/H5MD.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/INPCRD.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/LAMMPS.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/MMTF.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/MOL2.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/NAMDBIN.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/PDB.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/PDBQT.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/PQR.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/TNG.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/TRC.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/TRJ.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/TRR.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/TRZ.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/TXYZ.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/XDR.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/XTC.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/XYZ.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/base.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/chain.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/chemfiles.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/core.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/init.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/memory.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/null.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/pickle_readers.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/timestep.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates -creating build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/selections -copying doc/sphinx/source/documentation_pages/selections/base.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/selections -copying doc/sphinx/source/documentation_pages/selections/charmm.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/selections -copying doc/sphinx/source/documentation_pages/selections/gromacs.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/selections -copying doc/sphinx/source/documentation_pages/selections/jmol.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/selections -copying doc/sphinx/source/documentation_pages/selections/pymol.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/selections -copying doc/sphinx/source/documentation_pages/selections/vmd.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/selections -creating build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/auxiliary -copying doc/sphinx/source/documentation_pages/auxiliary/EDR.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/auxiliary -copying doc/sphinx/source/documentation_pages/auxiliary/XVG.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/auxiliary -copying doc/sphinx/source/documentation_pages/auxiliary/base.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/auxiliary -copying doc/sphinx/source/documentation_pages/auxiliary/core.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/auxiliary -copying doc/sphinx/source/documentation_pages/auxiliary/init.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/auxiliary -creating build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/legacy -copying doc/sphinx/source/documentation_pages/analysis/legacy/x3dna.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/legacy +creating build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core +copying doc/sphinx/source/documentation_pages/core/accessors.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core +copying doc/sphinx/source/documentation_pages/core/groups.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core +copying doc/sphinx/source/documentation_pages/core/init.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core +copying doc/sphinx/source/documentation_pages/core/selection.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core +copying doc/sphinx/source/documentation_pages/core/topology.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core +copying doc/sphinx/source/documentation_pages/core/topologyattrs.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core +copying doc/sphinx/source/documentation_pages/core/topologyobjects.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core +copying doc/sphinx/source/documentation_pages/core/universe.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core creating build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore copying doc/sphinx/source/documentation_pages/analysis/encore/bootstrap.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore copying doc/sphinx/source/documentation_pages/analysis/encore/clustering.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore @@ -2183,67 +2275,11 @@ copying doc/sphinx/source/documentation_pages/analysis/encore/dimensionality_reduction.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore copying doc/sphinx/source/documentation_pages/analysis/encore/similarity.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore copying doc/sphinx/source/documentation_pages/analysis/encore/utils.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore +creating build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/legacy +copying doc/sphinx/source/documentation_pages/analysis/legacy/x3dna.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/legacy creating build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/formats copying doc/sphinx/source/documentation_pages/lib/formats/libdcd.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/formats copying doc/sphinx/source/documentation_pages/lib/formats/libmdaxdr.rst -> build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/formats -copying MDAnalysis/lib/_augment.cpp -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib -copying MDAnalysis/lib/_augment.pyx -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib -copying MDAnalysis/lib/_cutil.cpp -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib -copying MDAnalysis/lib/_cutil.pxd -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib -copying MDAnalysis/lib/_cutil.pyx -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib -copying MDAnalysis/lib/c_distances.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib -copying MDAnalysis/lib/c_distances.pxd -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib -copying MDAnalysis/lib/c_distances.pyx -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib -copying MDAnalysis/lib/c_distances_openmp.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib -copying MDAnalysis/lib/c_distances_openmp.pyx -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib -copying MDAnalysis/lib/nsgrid.cpp -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib -copying MDAnalysis/lib/nsgrid.pyx -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib -copying MDAnalysis/lib/qcprot.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib -copying MDAnalysis/lib/qcprot.pyx -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib -copying MDAnalysis/coordinates/timestep.cpp -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/timestep.pxd -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/timestep.pyx -> build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/analysis/encore/cutils.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore -copying MDAnalysis/analysis/encore/cutils.pyx -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore -copying MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction -copying MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction -copying MDAnalysis/analysis/encore/clustering/affinityprop.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering -copying MDAnalysis/analysis/encore/clustering/affinityprop.pyx -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering -creating build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/src -copying MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/src -creating build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/include -copying MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/include -creating build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering/src -copying MDAnalysis/analysis/encore/clustering/src/ap.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering/src -creating build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering/include -copying MDAnalysis/analysis/encore/clustering/include/ap.h -> build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering/include -copying MDAnalysis/lib/formats/cython_util.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats -copying MDAnalysis/lib/formats/cython_util.pxd -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats -copying MDAnalysis/lib/formats/cython_util.pyx -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats -copying MDAnalysis/lib/formats/libdcd.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats -copying MDAnalysis/lib/formats/libdcd.pxd -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats -copying MDAnalysis/lib/formats/libdcd.pyx -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats -copying MDAnalysis/lib/formats/libmdaxdr.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats -copying MDAnalysis/lib/formats/libmdaxdr.pxd -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats -copying MDAnalysis/lib/formats/libmdaxdr.pyx -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats -copying MDAnalysis/lib/libmdanalysis/__init__.pxd -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/libmdanalysis -copying MDAnalysis/lib/include/calc_distances.h -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/include -copying MDAnalysis/lib/formats/src/trr_seek.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/src -copying MDAnalysis/lib/formats/src/xdrfile.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/src -copying MDAnalysis/lib/formats/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/src -copying MDAnalysis/lib/formats/src/xdrfile_xtc.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/src -copying MDAnalysis/lib/formats/src/xtc_seek.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/src -copying MDAnalysis/lib/formats/include/endianswap.h -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include -copying MDAnalysis/lib/formats/include/fastio.h -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include -copying MDAnalysis/lib/formats/include/readdcd.h -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include -copying MDAnalysis/lib/formats/include/trr_seek.h -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include -copying MDAnalysis/lib/formats/include/xdrfile.h -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include -copying MDAnalysis/lib/formats/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include -copying MDAnalysis/lib/formats/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include -copying MDAnalysis/lib/formats/include/xtc_seek.h -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include -copying MDAnalysis/lib/src/transformations/AUTHOR -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/src/transformations -copying MDAnalysis/lib/src/transformations/LICENCE -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/src/transformations -copying MDAnalysis/lib/src/transformations/transformations.c -> build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/src/transformations running build_ext building 'MDAnalysis.lib.formats.libdcd' extension creating build/temp.linux-armv7l-cpython-313/MDAnalysis/lib/formats @@ -2325,7 +2361,7 @@ arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-313/MDAnalysis/lib/formats/cython_util.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/cython_util.cpython-313-arm-linux-gnueabihf.so building 'MDAnalysis.analysis.encore.cutils' extension creating build/temp.linux-armv7l-cpython-313/MDAnalysis/analysis/encore -arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/arm-linux-gnueabihf/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MDAnalysis/analysis/encore/cutils.c -o build/temp.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/cutils.o -std=c11 -funroll-loops -fsigned-zeros -O1 +arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/arm-linux-gnueabihf/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MDAnalysis/analysis/encore/cutils.c -o build/temp.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/cutils.o -std=c11 -funroll-loops -fsigned-zeros -O3 In file included from /usr/lib/arm-linux-gnueabihf/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/arm-linux-gnueabihf/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/arm-linux-gnueabihf/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, @@ -2337,7 +2373,7 @@ building 'MDAnalysis.analysis.encore.clustering.affinityprop' extension creating build/temp.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering creating build/temp.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering/src -arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/arm-linux-gnueabihf/python3-numpy/numpy/_core/include -I/build/reproducible-path/mdanalysis-2.8.0/package/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.13 -c MDAnalysis/analysis/encore/clustering/affinityprop.c -o build/temp.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering/affinityprop.o -std=c11 -funroll-loops -fsigned-zeros -O1 +arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/arm-linux-gnueabihf/python3-numpy/numpy/_core/include -I/build/reproducible-path/mdanalysis-2.8.0/package/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.13 -c MDAnalysis/analysis/encore/clustering/affinityprop.c -o build/temp.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering/affinityprop.o -std=c11 -funroll-loops -fsigned-zeros -O3 In file included from /usr/lib/arm-linux-gnueabihf/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/arm-linux-gnueabihf/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/arm-linux-gnueabihf/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, @@ -2345,12 +2381,12 @@ /usr/lib/arm-linux-gnueabihf/python3-numpy/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ -arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/arm-linux-gnueabihf/python3-numpy/numpy/_core/include -I/build/reproducible-path/mdanalysis-2.8.0/package/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.13 -c MDAnalysis/analysis/encore/clustering/src/ap.c -o build/temp.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering/src/ap.o -std=c11 -funroll-loops -fsigned-zeros -O1 +arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/arm-linux-gnueabihf/python3-numpy/numpy/_core/include -I/build/reproducible-path/mdanalysis-2.8.0/package/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.13 -c MDAnalysis/analysis/encore/clustering/src/ap.c -o build/temp.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering/src/ap.o -std=c11 -funroll-loops -fsigned-zeros -O3 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering/affinityprop.o build/temp.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering/src/ap.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering/affinityprop.cpython-313-arm-linux-gnueabihf.so building 'MDAnalysis.analysis.encore.dimensionality_reduction.stochasticproxembed' extension creating build/temp.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/src -arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/arm-linux-gnueabihf/python3-numpy/numpy/_core/include -I/build/reproducible-path/mdanalysis-2.8.0/package/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.13 -c MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -o build/temp.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.o -std=c11 -funroll-loops -fsigned-zeros -O1 -arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/arm-linux-gnueabihf/python3-numpy/numpy/_core/include -I/build/reproducible-path/mdanalysis-2.8.0/package/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.13 -c MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -o build/temp.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.o -std=c11 -funroll-loops -fsigned-zeros -O1 +arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/arm-linux-gnueabihf/python3-numpy/numpy/_core/include -I/build/reproducible-path/mdanalysis-2.8.0/package/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.13 -c MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -o build/temp.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.o -std=c11 -funroll-loops -fsigned-zeros -O3 +arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mdanalysis-2.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/arm-linux-gnueabihf/python3-numpy/numpy/_core/include -I/build/reproducible-path/mdanalysis-2.8.0/package/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.13 -c MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -o build/temp.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.o -std=c11 -funroll-loops -fsigned-zeros -O3 In file included from /usr/lib/arm-linux-gnueabihf/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h:1913, from /usr/lib/arm-linux-gnueabihf/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib/arm-linux-gnueabihf/python3-numpy/numpy/_core/include/numpy/arrayobject.h:5, @@ -2397,514 +2433,514 @@ running install running install_lib creating build/bdist.linux-armv7l/wheel -creating build/bdist.linux-armv7l/wheel/doc -copying build/lib.linux-armv7l-cpython-313/doc/README -> build/bdist.linux-armv7l/wheel/./doc -creating build/bdist.linux-armv7l/wheel/doc/sphinx -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/Makefile -> build/bdist.linux-armv7l/wheel/./doc/sphinx -creating build/bdist.linux-armv7l/wheel/doc/sphinx/source -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/index.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source -creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/images -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images/RSMD_plot.png -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/images -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images/janin_demo_plot.png -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/images -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images/rama_ref_plot.png -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/images -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images/parallelization_time.png -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/images -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images/janin_ref_plot.png -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/images -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images/rama_demo_plot.png -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/images -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images/AnalysisBase_parallel.png -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/images -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images/msd_demo_plot.png -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/images -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/references.bib -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source -creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib_modules.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/selections_modules.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology_modules.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/visualization_modules.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages -creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/converters -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/converters/OpenMM.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/converters -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/converters/ParmEd.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/converters -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/converters/RDKit.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/converters -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/converters/base.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/converters -creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/hole2.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/dihedrals.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/rms.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/rdf.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/hbond_autocorrel_deprecated.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/dssp.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/pca.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/legacy_modules.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/nuclinfo.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/atomicdistances.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/bat.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/contacts.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/analysis/legacy -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/legacy/x3dna.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis/legacy -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/psa.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/distances.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/align.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/density.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/hbond_autocorrel.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/lineardensity.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/dielectric.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/helix_analysis.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/parallelization.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/msd.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/results.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/analysis/encore -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/similarity.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis/encore -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/bootstrap.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis/encore -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/covariance.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis/encore -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/clustering.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis/encore -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/dimensionality_reduction.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis/encore -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/utils.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis/encore -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/confdistmatrix.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis/encore -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/polymer.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/diffusionmap.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/data.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/base.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/waterdynamics.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/gnm.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/leaflet.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/backends.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/hydrogenbonds.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/nucleicacids.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/wbridge_analysis.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/overview.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core_modules.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages -creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/guesser_modules -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules/default_guesser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/guesser_modules -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules/tables.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/guesser_modules -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules/init.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/guesser_modules -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules/base.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/guesser_modules -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/converters.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages -creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/tpr_util.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/MMTFParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/TPRParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/ExtendedPDBParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/guessers.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/MinimalParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/PDBParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/core.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/XYZParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/tables.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/PDBQTParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/GSDParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/init.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/CRDParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/PQRParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/TOPParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/ITPParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/FHIAIMSParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/HoomdXMLParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/PSFParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/MOL2Parser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/GROParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/TXYZParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/DMSParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/GMSParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/DLPolyParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/base.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/LAMMPSParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/units.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis_modules.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages -creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/visualization -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/visualization/streamlines.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/visualization -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/visualization/test_streamplot_3D.png -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/visualization -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/visualization/testing_streamline.png -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/visualization -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/visualization/streamlines_3D.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/visualization -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/version.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages -creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/transformations -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations/translate.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/transformations -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations/rotate.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/transformations -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations/fit.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/transformations -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations/nojump.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/transformations -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations/boxdimensions.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/transformations -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations/positionaveraging.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/transformations -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations/wrap.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/transformations -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations/base.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/transformations -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/references.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/auxiliary_modules.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages -creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/core -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core/universe.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/core -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core/topologyattrs.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/core -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core/init.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/core -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core/selection.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/core -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core/topology.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/core -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core/accessors.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/core -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core/groups.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/core -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core/topologyobjects.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/core -creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/lib -creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/lib/formats -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/formats/libmdaxdr.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib/formats -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/formats/libdcd.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib/formats -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/nsgrid.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/util.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/distances.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/qcprot.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/correlations.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/c_distances_openmp.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/pkdtree.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/c_distances.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/mdamath.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/log.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/NeighborSearch.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/transformations.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/picklable_file_io.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/selections.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/trajectory_transformations.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/exceptions.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates_modules.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages -creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/chemfiles.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/GMS.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/XYZ.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/TXYZ.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/null.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/memory.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/INPCRD.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/CRD.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/PQR.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/core.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/pickle_readers.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/DCD.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/MMTF.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/LAMMPS.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/TRC.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/DMS.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/init.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/PDBQT.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/MOL2.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/GSD.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/PDB.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/FHIAIMS.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/DLPoly.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/TRR.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/GRO.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/NAMDBIN.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/XDR.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/TRZ.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/chain.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/TNG.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/timestep.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/base.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/XTC.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/H5MD.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/TRJ.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates -creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/selections -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/selections/gromacs.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/selections -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/selections/jmol.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/selections -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/selections/charmm.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/selections -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/selections/vmd.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/selections -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/selections/pymol.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/selections -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/selections/base.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/selections -creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/auxiliary -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/auxiliary/core.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/auxiliary -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/auxiliary/EDR.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/auxiliary -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/auxiliary/init.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/auxiliary -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/auxiliary/XVG.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/auxiliary -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/auxiliary/base.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/auxiliary -copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/conf.py -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source creating build/bdist.linux-armv7l/wheel/MDAnalysis -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/due.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis +creating build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/DCD.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/MMTF.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/TRJ.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/PQR.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/INPCRD.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/XYZ.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/timestep.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/core.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/ParmEd.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/XTC.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/memory.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/chemfiles.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/TNG.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/chain.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/TRC.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/GMS.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/TXYZ.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/XDR.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/MOL2.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/timestep.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/NAMDBIN.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/PDBQT.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/GSD.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/GRO.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/DLPoly.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/timestep.cpp -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/H5MD.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/FHIAIMS.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/CRD.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/TRR.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/null.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/TRZ.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/DMS.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/timestep.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/LAMMPS.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/PDB.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/authors.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis +creating build/bdist.linux-armv7l/wheel/MDAnalysis/selections +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/selections/jmol.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/selections/pymol.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/selections/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/selections/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/selections/charmm.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/selections/vmd.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/selections/gromacs.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections creating build/bdist.linux-armv7l/wheel/MDAnalysis/converters +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/converters/OpenMM.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters copying build/lib.linux-armv7l-cpython-313/MDAnalysis/converters/RDKitParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/converters/OpenMMParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters copying build/lib.linux-armv7l-cpython-313/MDAnalysis/converters/ParmEd.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters copying build/lib.linux-armv7l-cpython-313/MDAnalysis/converters/RDKit.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters copying build/lib.linux-armv7l-cpython-313/MDAnalysis/converters/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/converters/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/converters/OpenMM.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters copying build/lib.linux-armv7l-cpython-313/MDAnalysis/converters/ParmEdParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/converters/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/converters/OpenMMParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/converters +creating build/bdist.linux-armv7l/wheel/MDAnalysis/visualization +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/visualization/streamlines.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/visualization +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/visualization/streamlines_3D.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/visualization +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/visualization +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/exceptions.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis +creating build/bdist.linux-armv7l/wheel/MDAnalysis/tests +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/tests +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/tests/datafiles.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/tests creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/helix_analysis.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/atomicdistances.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/lineardensity.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/dielectric.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/rdf.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/backends.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis -creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hbonds -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/hbonds/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hbonds -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hbonds -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/waterdynamics.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/leaflet.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/polymer.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis -creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/legacy -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/legacy/x3dna.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/legacy -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/legacy/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/legacy -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/nucleicacids.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis -creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/dssp -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/dssp/dssp.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/dssp -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/dssp/pydssp_numpy.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/dssp -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/dssp/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/dssp -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/msd.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/align.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/dihedrals.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/bat.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/density.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/results.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis -creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2 -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/hole2/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hole2 -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/diffusionmap.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/gnm.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/lineardensity.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/nuclinfo.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/distances.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/contacts.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/psa.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/rms.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/backends.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/confdistmatrix.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/cutils.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/bootstrap.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/covariance.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/confdistmatrix.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/cutils.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore -creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction -creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/src -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction/src -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction -creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/include -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction/include -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/similarity.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering/cluster.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering/affinityprop.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering/affinityprop.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering/affinityprop.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering/src copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering/src/ap.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering/src -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering/affinityprop.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering/affinityprop.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering/include copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering/include/ap.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering/include -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/clustering -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/similarity.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/cutils.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore +creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction +creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/src +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction/src +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction +creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/include +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction/include +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/covariance.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/encore/utils.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/encore +creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hbonds +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/hbonds/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hbonds +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hbonds +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/helix_analysis.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/dielectric.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/waterdynamics.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/atomicdistances.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/msd.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/rdf.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/results.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/leaflet.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis +creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/dssp +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/dssp/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/dssp +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/dssp/dssp.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/dssp +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/dssp/pydssp_numpy.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/dssp +creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2 +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/hole2/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hole2 +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/pca.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/align.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/nucleicacids.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/polymer.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/distances.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hydrogenbonds copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hydrogenbonds copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/hydrogenbonds/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hydrogenbonds copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/hydrogenbonds +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/diffusionmap.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis +creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/legacy +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/legacy/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/legacy +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/legacy/x3dna.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/legacy creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/data/rama_ref_data.npy -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/data copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/data/janin_ref_data.npy -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/data copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/data/filenames.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/data copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/data/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/data -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/data/rama_ref_data.npy -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis/data -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/pca.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/gnm.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/density.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/contacts.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/bat.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/analysis/psa.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/analysis +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/units.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis +creating build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/auxiliary/core.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/auxiliary +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/auxiliary/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/auxiliary +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/auxiliary/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/auxiliary +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/auxiliary/XVG.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/auxiliary +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/auxiliary/EDR.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/auxiliary +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/due.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis +creating build/bdist.linux-armv7l/wheel/MDAnalysis/transformations +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations/nojump.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations/fit.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations/positionaveraging.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations/translate.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations/rotate.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations/wrap.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations/boxdimensions.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations creating build/bdist.linux-armv7l/wheel/MDAnalysis/topology -creating build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/tpr/setting.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology/tpr -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/tpr/obj.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology/tpr -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/tpr/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology/tpr -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/tpr/utils.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology/tpr -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/GROParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/GMSParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/MMTFParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/CRDParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/HoomdXMLParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/PDBParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/ITPParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/TOPParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/XYZParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/MinimalParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/PSFParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/PQRParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/GMSParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/TPRParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/core.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/MMTFParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/ExtendedPDBParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/PDBQTParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/PSFParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/ParmEdParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/DLPolyParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/TXYZParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/FHIAIMSParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/CRDParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/GSDParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/core.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/TPRParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/DMSParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/LAMMPSParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/ExtendedPDBParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/ParmEdParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/HoomdXMLParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/GSDParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/MOL2Parser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/tables.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/guessers.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology -creating build/bdist.linux-armv7l/wheel/MDAnalysis/guesser -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/guesser/default_guesser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/guesser -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/guesser/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/guesser -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/guesser/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/guesser -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/guesser/tables.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/guesser -creating build/bdist.linux-armv7l/wheel/MDAnalysis/visualization -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/visualization/streamlines_3D.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/visualization -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/visualization -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/visualization/streamlines.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/visualization -creating build/bdist.linux-armv7l/wheel/MDAnalysis/tests -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/tests/datafiles.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/tests -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/tests -creating build/bdist.linux-armv7l/wheel/MDAnalysis/transformations -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations/wrap.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations/rotate.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations/positionaveraging.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations/fit.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations/translate.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations/nojump.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/transformations/boxdimensions.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/transformations -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/exceptions.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis -creating build/bdist.linux-armv7l/wheel/MDAnalysis/core -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/core/selection.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/core/topologyobjects.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/core/groups.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/core/topology.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/core/universe.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/core/accessors.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/core/topologyattrs.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/core/_get_readers.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/core/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/tables.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology +creating build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/tpr/obj.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology/tpr +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/tpr/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology/tpr +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/tpr/utils.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology/tpr +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/tpr/setting.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology/tpr +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/MinimalParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/XYZParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/TOPParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/GROParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/topology/LAMMPSParser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/topology creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/c_distances_openmp.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/libdcd.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/libmdaxdr.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/cython_util.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/libdcd.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/cython_util.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/libmdaxdr.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/cython_util.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/libdcd.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/cython_util.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/libmdaxdr.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/libdcd.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/src/xdrfile.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/src -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/src/trr_seek.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/src copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/src/xtc_seek.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/src +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/src +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/src/xdrfile.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/src copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/src/xdrfile_xtc.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/src +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/src/trr_seek.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/src copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/src/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/src -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/src +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/cython_util.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/libmdaxdr.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include/fastio.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include/xtc_seek.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include/trr_seek.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include/endianswap.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include/xtc_seek.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include/readdcd.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include/fastio.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include/endianswap.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include/readdcd.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/include/trr_seek.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats/include copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/libdcd.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/libdcd.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/libmdaxdr.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/libdcd.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/cython_util.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/formats/libmdaxdr.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/formats -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/transformations.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/qcprot.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/_cutil.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/c_distances.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/c_distances.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/mdamath.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/NeighborSearch.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/qcprot.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/_augment.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/_cutil.cpp -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/_cutil.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/nsgrid.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/c_distances.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/c_distances_openmp.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib -creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/libmdanalysis -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/libmdanalysis/__init__.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/libmdanalysis -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/libmdanalysis/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/libmdanalysis -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/picklable_file_io.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/_distopia.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/correlations.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/pkdtree.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/c_distances.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src/transformations copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/src/transformations/LICENCE -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/src/transformations copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/src/transformations/AUTHOR -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/src/transformations -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/src/transformations/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/src/transformations copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/src/transformations/transformations.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/src/transformations -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/correlations.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/c_distances.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/log.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/c_distances.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/src/transformations/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/src/transformations +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/_augment.cpp -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/transformations.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/_cutil.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/qcprot.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/nsgrid.cpp -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/_transformations.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/nsgrid.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib +creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/libmdanalysis +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/libmdanalysis/__init__.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/libmdanalysis +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/libmdanalysis/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/libmdanalysis copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/_cutil.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/c_distances_openmp.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/_cutil.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/log.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/distances.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/_cutil.cpp -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/picklable_file_io.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/_distopia.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/c_distances.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/include copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/include/calc_distances.h -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/include copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/include/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib/include -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/mdamath.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/qcprot.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/nsgrid.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/pkdtree.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/distances.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/_augment.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/_transformations.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/_augment.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/c_distances_openmp.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/_augment.cpp -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/util.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/c_distances.c -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/authors.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis -creating build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/timestep.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/CRD.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/timestep.cpython-313-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/PQR.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/PDB.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/DCD.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/TRR.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/NAMDBIN.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/TNG.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/ParmEd.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/XDR.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/null.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/INPCRD.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/chain.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/timestep.cpp -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/GRO.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/DMS.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/TRJ.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/MMTF.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/GSD.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/memory.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/DLPoly.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/TRZ.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/timestep.pxd -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/PDBQT.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/XYZ.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/LAMMPS.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/FHIAIMS.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/TXYZ.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/MOL2.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/core.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/GMS.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/XTC.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/TRC.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/H5MD.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/coordinates/chemfiles.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/coordinates -creating build/bdist.linux-armv7l/wheel/MDAnalysis/selections -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/selections/jmol.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/selections/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/selections/pymol.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/selections/charmm.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/selections/gromacs.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/selections/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/selections/vmd.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/selections -creating build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/auxiliary/XVG.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/auxiliary -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/auxiliary/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/auxiliary -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/auxiliary/EDR.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/auxiliary -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/auxiliary/core.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/auxiliary -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/auxiliary/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/auxiliary -copying build/lib.linux-armv7l-cpython-313/MDAnalysis/units.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/lib/qcprot.pyx -> build/bdist.linux-armv7l/wheel/./MDAnalysis/lib +creating build/bdist.linux-armv7l/wheel/MDAnalysis/core +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/core/topology.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/core/universe.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/core/_get_readers.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/core/selection.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/core/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/core/topologyattrs.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/core/groups.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/core/topologyobjects.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/core/accessors.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/core copying build/lib.linux-armv7l-cpython-313/MDAnalysis/version.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis +creating build/bdist.linux-armv7l/wheel/MDAnalysis/guesser +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/guesser/base.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/guesser +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/guesser/default_guesser.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/guesser +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/guesser/__init__.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/guesser +copying build/lib.linux-armv7l-cpython-313/MDAnalysis/guesser/tables.py -> build/bdist.linux-armv7l/wheel/./MDAnalysis/guesser +creating build/bdist.linux-armv7l/wheel/doc +creating build/bdist.linux-armv7l/wheel/doc/sphinx +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/Makefile -> build/bdist.linux-armv7l/wheel/./doc/sphinx +creating build/bdist.linux-armv7l/wheel/doc/sphinx/source +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/references.bib -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source +creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/trajectory_transformations.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages +creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/INPCRD.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/MOL2.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/FHIAIMS.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/memory.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/GSD.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/chemfiles.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/chain.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/init.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/LAMMPS.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/PDB.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/core.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/DCD.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/PDBQT.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/XTC.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/XYZ.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/DLPoly.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/NAMDBIN.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/H5MD.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/TRZ.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/CRD.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/DMS.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/TRR.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/base.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/null.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/PQR.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/GMS.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/pickle_readers.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/GRO.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/TRJ.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/TXYZ.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/TNG.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/XDR.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/MMTF.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/timestep.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates/TRC.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/converters.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/version.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/exceptions.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages +creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/selections +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/selections/gromacs.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/selections +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/selections/jmol.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/selections +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/selections/pymol.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/selections +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/selections/vmd.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/selections +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/selections/charmm.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/selections +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/selections/base.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/selections +creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/converters +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/converters/OpenMM.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/converters +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/converters/RDKit.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/converters +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/converters/base.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/converters +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/converters/ParmEd.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/converters +creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/visualization +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/visualization/testing_streamline.png -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/visualization +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/visualization/streamlines_3D.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/visualization +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/visualization/streamlines.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/visualization +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/visualization/test_streamplot_3D.png -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/visualization +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/visualization_modules.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages +creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/guesser_modules +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules/init.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/guesser_modules +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules/default_guesser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/guesser_modules +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules/tables.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/guesser_modules +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules/base.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/guesser_modules +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis_modules.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/auxiliary_modules.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology_modules.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/units.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages +creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/parallelization.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/density.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/polymer.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/nuclinfo.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/results.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/lineardensity.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/data.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/helix_analysis.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/nucleicacids.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/bat.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/analysis/encore +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/confdistmatrix.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis/encore +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/utils.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis/encore +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/clustering.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis/encore +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/bootstrap.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis/encore +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/dimensionality_reduction.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis/encore +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/similarity.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis/encore +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/covariance.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis/encore +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/wbridge_analysis.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/legacy_modules.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/hbond_autocorrel_deprecated.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/msd.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/hydrogenbonds.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/rdf.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/atomicdistances.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/gnm.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/hbond_autocorrel.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/contacts.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/dielectric.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/base.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/rms.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/backends.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/pca.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/dihedrals.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/waterdynamics.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/hole2.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/leaflet.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/analysis/legacy +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/legacy/x3dna.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis/legacy +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/align.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/diffusionmap.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/psa.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/dssp.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/distances.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/overview.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages +creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/auxiliary +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/auxiliary/init.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/auxiliary +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/auxiliary/core.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/auxiliary +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/auxiliary/EDR.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/auxiliary +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/auxiliary/base.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/auxiliary +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/auxiliary/XVG.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/auxiliary +creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/transformations +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations/wrap.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/transformations +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations/boxdimensions.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/transformations +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations/positionaveraging.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/transformations +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations/base.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/transformations +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations/nojump.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/transformations +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations/fit.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/transformations +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations/translate.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/transformations +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/transformations/rotate.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/transformations +creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/guessers.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/DMSParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/LAMMPSParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/MOL2Parser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/HoomdXMLParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/ITPParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/init.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/core.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/MinimalParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/FHIAIMSParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/tables.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/TPRParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/MMTFParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/PDBParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/tpr_util.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/PSFParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/base.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/ExtendedPDBParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/TOPParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/PQRParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/CRDParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/GMSParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/GROParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/DLPolyParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/PDBQTParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/TXYZParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/XYZParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/topology/GSDParser.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/topology +creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/lib +creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/lib/formats +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/formats/libdcd.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib/formats +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/formats/libmdaxdr.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib/formats +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/picklable_file_io.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/transformations.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/mdamath.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/util.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/NeighborSearch.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/correlations.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/c_distances_openmp.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/c_distances.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/pkdtree.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/log.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/nsgrid.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/qcprot.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib/distances.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/lib +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/references.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/selections.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core_modules.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages +creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/documentation_pages/core +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core/universe.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/core +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core/selection.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/core +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core/init.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/core +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core/topology.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/core +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core/accessors.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/core +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core/groups.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/core +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core/topologyobjects.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/core +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/core/topologyattrs.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages/core +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/coordinates_modules.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/lib_modules.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/selections_modules.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/documentation_pages +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/index.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source +creating build/bdist.linux-armv7l/wheel/doc/sphinx/source/images +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images/AnalysisBase_parallel.png -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/images +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images/RSMD_plot.png -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/images +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images/janin_ref_plot.png -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/images +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images/janin_demo_plot.png -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/images +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images/rama_demo_plot.png -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/images +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images/msd_demo_plot.png -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/images +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images/rama_ref_plot.png -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/images +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/images/parallelization_time.png -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source/images +copying build/lib.linux-armv7l-cpython-313/doc/sphinx/source/conf.py -> build/bdist.linux-armv7l/wheel/./doc/sphinx/source +copying build/lib.linux-armv7l-cpython-313/doc/README -> build/bdist.linux-armv7l/wheel/./doc running install_egg_info Copying MDAnalysis.egg-info to build/bdist.linux-armv7l/wheel/./MDAnalysis-2.8.0.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/MDAnalysis-2.8.0.dist-info/WHEEL -creating '/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/.tmp-oq0q471_/MDAnalysis-2.8.0-cp313-cp313-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it +creating '/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/.tmp-d2ydguup/MDAnalysis-2.8.0-cp313-cp313-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it adding 'MDAnalysis/__init__.py' adding 'MDAnalysis/authors.py' adding 'MDAnalysis/due.py' @@ -3381,48 +3417,48 @@ loading intersphinx inventory 'h5py' from https://docs.h5py.org/en/stable/objects.inv ... loading intersphinx inventory 'python' from https://docs.python.org/3/objects.inv ... loading intersphinx inventory 'scipy' from https://docs.scipy.org/doc/scipy/objects.inv ... +WARNING: failed to reach any of the inventories with the following issues: +intersphinx inventory 'https://docs.h5py.org/en/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.h5py.org', port=443): Max retries exceeded with url: /en/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory 'gsd' from https://gsd.readthedocs.io/en/stable/objects.inv ... -loading intersphinx inventory 'maplotlib' from https://matplotlib.org/stable/objects.inv ... +WARNING: failed to reach any of the inventories with the following issues: +intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory 'griddataformats' from https://mdanalysis.org/GridDataFormats/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.scipy.org/doc/scipy/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.scipy.org', port=443): Max retries exceeded with url: /doc/scipy/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://docs.scipy.org/doc/scipy/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.scipy.org', port=443): Max retries exceeded with url: /doc/scipy/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +WARNING: failed to reach any of the inventories with the following issues: +intersphinx inventory 'https://gsd.readthedocs.io/en/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='gsd.readthedocs.io', port=443): Max retries exceeded with url: /en/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory 'pmda' from https://mdanalysis.org/pmda/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.h5py.org/en/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.h5py.org', port=443): Max retries exceeded with url: /en/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://mdanalysis.org/GridDataFormats/objects.inv' not fetchable due to : HTTPSConnectionPool(host='mdanalysis.org', port=443): Max retries exceeded with url: /GridDataFormats/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +loading intersphinx inventory 'maplotlib' from https://matplotlib.org/stable/objects.inv ... +WARNING: failed to reach any of the inventories with the following issues: +intersphinx inventory 'https://matplotlib.org/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='matplotlib.org', port=443): Max retries exceeded with url: /stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +WARNING: failed to reach any of the inventories with the following issues: +intersphinx inventory 'https://mdanalysis.org/pmda/objects.inv' not fetchable due to : HTTPSConnectionPool(host='mdanalysis.org', port=443): Max retries exceeded with url: /pmda/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory 'parmed' from https://parmed.github.io/ParmEd/html/objects.inv ... +loading intersphinx inventory 'rdkit' from https://rdkit.org/docs/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://parmed.github.io/ParmEd/html/objects.inv' not fetchable due to : HTTPSConnectionPool(host='parmed.github.io', port=443): Max retries exceeded with url: /ParmEd/html/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory 'networkx' from https://networkx.org/documentation/stable/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://gsd.readthedocs.io/en/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='gsd.readthedocs.io', port=443): Max retries exceeded with url: /en/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) -loading intersphinx inventory 'numpy' from https://numpy.org/doc/stable/objects.inv ... -WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://matplotlib.org/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='matplotlib.org', port=443): Max retries exceeded with url: /stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://rdkit.org/docs/objects.inv' not fetchable due to : HTTPSConnectionPool(host='rdkit.org', port=443): Max retries exceeded with url: /docs/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory 'waterdynamics' from https://www.mdanalysis.org/waterdynamics/objects.inv ... -loading intersphinx inventory 'rdkit' from https://rdkit.org/docs/objects.inv ... +loading intersphinx inventory 'numpy' from https://numpy.org/doc/stable/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://mdanalysis.org/pmda/objects.inv' not fetchable due to : HTTPSConnectionPool(host='mdanalysis.org', port=443): Max retries exceeded with url: /pmda/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://networkx.org/documentation/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='networkx.org', port=443): Max retries exceeded with url: /documentation/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory 'pathsimanalysis' from https://www.mdanalysis.org/PathSimAnalysis/objects.inv ... loading intersphinx inventory 'mdahole2' from https://www.mdanalysis.org/mdahole2/objects.inv ... -WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://mdanalysis.org/GridDataFormats/objects.inv' not fetchable due to : HTTPSConnectionPool(host='mdanalysis.org', port=443): Max retries exceeded with url: /GridDataFormats/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory 'dask' from https://docs.dask.org/en/stable/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://parmed.github.io/ParmEd/html/objects.inv' not fetchable due to : HTTPSConnectionPool(host='parmed.github.io', port=443): Max retries exceeded with url: /ParmEd/html/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) -WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://networkx.org/documentation/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='networkx.org', port=443): Max retries exceeded with url: /documentation/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) -WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://numpy.org/doc/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='numpy.org', port=443): Max retries exceeded with url: /doc/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) -WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://rdkit.org/docs/objects.inv' not fetchable due to : HTTPSConnectionPool(host='rdkit.org', port=443): Max retries exceeded with url: /docs/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://www.mdanalysis.org/waterdynamics/objects.inv' not fetchable due to : HTTPSConnectionPool(host='www.mdanalysis.org', port=443): Max retries exceeded with url: /waterdynamics/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://www.mdanalysis.org/waterdynamics/objects.inv' not fetchable due to : HTTPSConnectionPool(host='www.mdanalysis.org', port=443): Max retries exceeded with url: /waterdynamics/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://www.mdanalysis.org/PathSimAnalysis/objects.inv' not fetchable due to : HTTPSConnectionPool(host='www.mdanalysis.org', port=443): Max retries exceeded with url: /PathSimAnalysis/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://www.mdanalysis.org/mdahole2/objects.inv' not fetchable due to : HTTPSConnectionPool(host='www.mdanalysis.org', port=443): Max retries exceeded with url: /mdahole2/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://www.mdanalysis.org/mdahole2/objects.inv' not fetchable due to : HTTPSConnectionPool(host='www.mdanalysis.org', port=443): Max retries exceeded with url: /mdahole2/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://www.mdanalysis.org/PathSimAnalysis/objects.inv' not fetchable due to : HTTPSConnectionPool(host='www.mdanalysis.org', port=443): Max retries exceeded with url: /PathSimAnalysis/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://docs.dask.org/en/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.dask.org', port=443): Max retries exceeded with url: /en/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.dask.org/en/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.dask.org', port=443): Max retries exceeded with url: /en/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://numpy.org/doc/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='numpy.org', port=443): Max retries exceeded with url: /doc/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) locale_dir /build/reproducible-path/mdanalysis-2.8.0/package/doc/sphinx/source/locales/en/LC_MESSAGES does not exist building [mo]: targets for 0 po files that are out of date writing output... @@ -3489,7 +3525,7 @@ Didn't find DistanceMatrix.atoms in MDAnalysis.analysis.diffusionmap Didn't find DistanceMatrix.results.dist_matrix in MDAnalysis.analysis.diffusionmap reading sources... [ 6%] documentation_pages/analysis/dihedrals -Matplotlib created a temporary cache directory at /tmp/matplotlib-mreaas4m because the default path (/nonexistent/first-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. +Matplotlib created a temporary cache directory at /tmp/matplotlib-eu5ptcyz because the default path (/nonexistent/second-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. Didn't find Dihedral.results.angles in MDAnalysis.analysis.dihedrals Didn't find Ramachandran.results.angles in MDAnalysis.analysis.dihedrals Didn't find Janin.results.angles in MDAnalysis.analysis.dihedrals @@ -3809,8 +3845,8 @@ done copying assets... copying static files... -Writing evaluated template result to /build/reproducible-path/mdanalysis-2.8.0/.pybuild/html/_static/language_data.js Writing evaluated template result to /build/reproducible-path/mdanalysis-2.8.0/.pybuild/html/_static/documentation_options.js +Writing evaluated template result to /build/reproducible-path/mdanalysis-2.8.0/.pybuild/html/_static/language_data.js Writing evaluated template result to /build/reproducible-path/mdanalysis-2.8.0/.pybuild/html/_static/basic.css Writing evaluated template result to /build/reproducible-path/mdanalysis-2.8.0/.pybuild/html/_static/alabaster.css copying static files: done @@ -4289,7 +4325,7 @@ hypothesis profile 'default' -> database=DirectoryBasedExampleDatabase(PosixPath('/build/reproducible-path/mdanalysis-2.8.0/.hypothesis/examples')) rootdir: /build/reproducible-path/mdanalysis-2.8.0/testsuite configfile: pyproject.toml -plugins: hypothesis-6.127.4, typeguard-4.4.2 +plugins: typeguard-4.4.2, hypothesis-6.127.4 collecting ... collected 19667 items / 2 deselected / 6 skipped / 19665 selected testsuite/MDAnalysisTests/analysis/test_align.py::TestRotationMatrix::test_rotation_matrix_input[a0-b0-None-0.15785647734415692] PASSED [ 0%] @@ -4628,112 +4664,112 @@ testsuite/MDAnalysisTests/analysis/test_distances.py::TestBetween::test_between_simple_case_indices_only PASSED [ 1%] testsuite/MDAnalysisTests/analysis/test_distances.py::TestBetween::test_between_return_type[5.9] PASSED [ 1%] testsuite/MDAnalysisTests/analysis/test_distances.py::TestBetween::test_between_return_type[0.0] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3hklA.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3gknA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2fvvA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3q4oA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2xr6A.pdb.gz] PASSED [ 1%] testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2j49A.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1bvyF.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2xcjA.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3ieyB.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1lpbA.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1eteA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3nzmA.pdb.gz] PASSED [ 1%] testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3ny7A.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1i8nA.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1y1lA.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3k7pA.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3t5gB.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2xcjA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1mr1D.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1bvyF.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3on9A.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3so6A.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1dx5I.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2cayA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2qdlA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3l4rA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3gknA.pdb.gz] PASSED [ 1%] testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1h4aX.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/4gcnA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3gwiA.pdb.gz] PASSED [ 1%] testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2i39A.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3nngA.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3pivA.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2qdlA.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3nzmA.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2fvvA.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3ejfA.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3q4oA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3a4rA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3ieyB.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2cviA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/4gcnA.pdb.gz] PASSED [ 1%] testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1or4A.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3on9A.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3gwiA.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/4dkcA.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2a2lA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3hklA.pdb.gz] PASSED [ 1%] testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3fhkA.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2cayA.pdb.gz] PASSED [ 1%] testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3gfsA.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3e8mA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3nbkA.pdb.gz] PASSED [ 1%] testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2gu3A.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3ii2A.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3a4rA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1eteA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1pdoA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3nngA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3aqgA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1i8nA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3k7pA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1y1lA.pdb.gz] PASSED [ 1%] testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1ahsA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3ejfA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3lqcA.pdb.gz] PASSED [ 1%] testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2va0A.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1pdoA.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3so6A.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2xr6A.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2cviA.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3nbkA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3pivA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3vjzA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2a2lA.pdb.gz] PASSED [ 1%] testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1v7mV.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3aqgA.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1dx5I.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1lpbA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/4dkcA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3ii2A.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3e8mA.pdb.gz] PASSED [ 1%] testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2xdgA.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3vjzA.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1mr1D.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3lqcA.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3l4rA.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory[client_DSSP0] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_atomgroup[client_DSSP0] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory_with_hydrogens[client_DSSP0] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3t5gB.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory[client_DSSP0] FAILED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_atomgroup[client_DSSP0] FAILED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory_with_hydrogens[client_DSSP0] FAILED [ 1%] testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory_without_hydrogen_fails[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2xdgA.pdb.gz] PASSED [ 1%] testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory_with_uneven_number_of_atoms_fails[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1mr1D_failing.pdb.gz] PASSED [ 1%] testsuite/MDAnalysisTests/analysis/test_dssp.py::test_exception_raises_with_atom_index[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/wrong_hydrogens.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3hklA.pdb.gz] PASSED [ 1%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3gknA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2fvvA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3q4oA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2xr6A.pdb.gz] PASSED [ 2%] testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2j49A.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1bvyF.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2xcjA.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3ieyB.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1lpbA.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1eteA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3nzmA.pdb.gz] PASSED [ 2%] testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3ny7A.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1i8nA.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1y1lA.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3k7pA.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3t5gB.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2xcjA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1mr1D.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1bvyF.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3on9A.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3so6A.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1dx5I.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2cayA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2qdlA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3l4rA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3gknA.pdb.gz] PASSED [ 2%] testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1h4aX.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/4gcnA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3gwiA.pdb.gz] PASSED [ 2%] testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2i39A.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3nngA.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3pivA.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2qdlA.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3nzmA.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2fvvA.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3ejfA.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3q4oA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3a4rA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3ieyB.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2cviA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/4gcnA.pdb.gz] PASSED [ 2%] testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1or4A.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3on9A.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3gwiA.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/4dkcA.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2a2lA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3hklA.pdb.gz] PASSED [ 2%] testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3fhkA.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2cayA.pdb.gz] PASSED [ 2%] testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3gfsA.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3e8mA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3nbkA.pdb.gz] PASSED [ 2%] testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2gu3A.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3ii2A.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3a4rA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1eteA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1pdoA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3nngA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3aqgA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1i8nA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3k7pA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1y1lA.pdb.gz] PASSED [ 2%] testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1ahsA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3ejfA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3lqcA.pdb.gz] PASSED [ 2%] testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2va0A.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1pdoA.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3so6A.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2xr6A.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2cviA.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3nbkA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3pivA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3vjzA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2a2lA.pdb.gz] PASSED [ 2%] testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1v7mV.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3aqgA.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1dx5I.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1lpbA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/4dkcA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3ii2A.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3e8mA.pdb.gz] PASSED [ 2%] testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2xdgA.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3vjzA.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1mr1D.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3lqcA.pdb.gz] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3l4rA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3t5gB.pdb.gz] PASSED [ 2%] testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory[client_DSSP1] PASSED [ 2%] testsuite/MDAnalysisTests/analysis/test_dssp.py::test_atomgroup[client_DSSP1] PASSED [ 2%] testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory_with_hydrogens[client_DSSP1] PASSED [ 2%] @@ -4742,7 +4778,7 @@ testsuite/MDAnalysisTests/analysis/test_dssp.py::test_exception_raises_with_atom_index[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/wrong_hydrogens.pdb.gz] PASSED [ 2%] testsuite/MDAnalysisTests/analysis/test_encore.py::test_moved_to_mdakit_warning PASSED [ 2%] testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_triangular_matrix PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_parallel_calculation PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_parallel_calculation FAILED [ 2%] testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_rmsd_matrix_with_superimposition PASSED [ 2%] testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_rmsd_matrix_with_superimposition_custom_weights PASSED [ 2%] testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_rmsd_matrix_without_superimposition PASSED [ 2%] @@ -4800,10 +4836,10 @@ testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreDimensionalityReduction::test_dimensionality_reduction_two_different_methods PASSED [ 2%] testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreConfDistMatrix::test_get_distance_matrix PASSED [ 2%] testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreImportWarnings::test_import_warnings PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_gnm.py::test_gnm[client_GNMAnalysis0] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_gnm.py::test_gnm_run_step[client_GNMAnalysis0] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_gnm.py::test_closeContactGNMAnalysis[client_GNMAnalysis0] PASSED [ 2%] -testsuite/MDAnalysisTests/analysis/test_gnm.py::test_closeContactGNMAnalysis_weights_None[client_GNMAnalysis0] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_gnm.py::test_gnm[client_GNMAnalysis0] FAILED [ 2%] +testsuite/MDAnalysisTests/analysis/test_gnm.py::test_gnm_run_step[client_GNMAnalysis0] FAILED [ 2%] +testsuite/MDAnalysisTests/analysis/test_gnm.py::test_closeContactGNMAnalysis[client_GNMAnalysis0] FAILED [ 2%] +testsuite/MDAnalysisTests/analysis/test_gnm.py::test_closeContactGNMAnalysis_weights_None[client_GNMAnalysis0] FAILED [ 2%] testsuite/MDAnalysisTests/analysis/test_gnm.py::test_gnm[client_GNMAnalysis1] PASSED [ 2%] testsuite/MDAnalysisTests/analysis/test_gnm.py::test_gnm_run_step[client_GNMAnalysis1] PASSED [ 2%] testsuite/MDAnalysisTests/analysis/test_gnm.py::test_closeContactGNMAnalysis[client_GNMAnalysis1] PASSED [ 2%] @@ -4890,36 +4926,36 @@ testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::test_donors_nobonds PASSED [ 3%] testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::test_find_hydrogen_donors_deprecation_warning PASSED [ 3%] testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::test_moved_module_warning PASSED [ 3%] -testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_hbond_analysis[client_HydrogenBondAnalysis0] PASSED [ 3%] -testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_time[client_HydrogenBondAnalysis0] PASSED [ 3%] -testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_type[client_HydrogenBondAnalysis0] PASSED [ 3%] -testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_ids[client_HydrogenBondAnalysis0] PASSED [ 3%] -testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_hbonds_deprecated_attr[client_HydrogenBondAnalysis0] PASSED [ 3%] -testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_count_by_type[client_HydrogenBondAnalysis0] PASSED [ 3%] -testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_first_hbond[client_HydrogenBondAnalysis0] PASSED [ 3%] -testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_count_by_time[client_HydrogenBondAnalysis0] PASSED [ 3%] -testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_hydrogen_bond_lifetime[client_HydrogenBondAnalysis0] PASSED [ 3%] -testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_hydrogen_bond_lifetime_intermittency[client_HydrogenBondAnalysis0] PASSED [ 3%] -testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_logging_step_not_1[client_HydrogenBondAnalysis0] PASSED [ 3%] -testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_count_by_type[client_HydrogenBondAnalysis0] PASSED [ 3%] -testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_first_hbond[client_HydrogenBondAnalysis0] PASSED [ 3%] -testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_count_by_time[client_HydrogenBondAnalysis0] PASSED [ 3%] -testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_hydrogen_bond_lifetime[client_HydrogenBondAnalysis0] PASSED [ 3%] -testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_hydrogen_bond_lifetime_intermittency[client_HydrogenBondAnalysis0] PASSED [ 3%] -testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_logging_step_not_1[client_HydrogenBondAnalysis0] PASSED [ 3%] -testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_all[client_HydrogenBondAnalysis0] PASSED [ 3%] -testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_PW[client_HydrogenBondAnalysis0] PASSED [ 3%] -testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_PW_PP[client_HydrogenBondAnalysis0] PASSED [ 3%] -testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_hbond_analysis[client_HydrogenBondAnalysis0] PASSED [ 3%] -testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_time[client_HydrogenBondAnalysis0] PASSED [ 3%] -testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_type[client_HydrogenBondAnalysis0] PASSED [ 3%] -testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_ids[client_HydrogenBondAnalysis0] PASSED [ 3%] -testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_hbonds_deprecated_attr[client_HydrogenBondAnalysis0] PASSED [ 3%] -testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_no_hydrogens[client_HydrogenBondAnalysis0] PASSED [ 3%] -testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3PStartStep::test_hbond_analysis[client_HydrogenBondAnalysis0] PASSED [ 3%] -testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3PStartStep::test_count_by_time[client_HydrogenBondAnalysis0] PASSED [ 3%] -testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3PStartStep::test_count_by_type[client_HydrogenBondAnalysis0] PASSED [ 3%] -testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisEmptySelections::test_hbond_analysis[client_HydrogenBondAnalysis0] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_hbond_analysis[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_time[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_type[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_ids[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_hbonds_deprecated_attr[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_count_by_type[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_first_hbond[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_count_by_time[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_hydrogen_bond_lifetime[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_hydrogen_bond_lifetime_intermittency[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_logging_step_not_1[client_HydrogenBondAnalysis0] FAILED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_count_by_type[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_first_hbond[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_count_by_time[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_hydrogen_bond_lifetime[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_hydrogen_bond_lifetime_intermittency[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_logging_step_not_1[client_HydrogenBondAnalysis0] FAILED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_all[client_HydrogenBondAnalysis0] FAILED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_PW[client_HydrogenBondAnalysis0] FAILED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_PW_PP[client_HydrogenBondAnalysis0] FAILED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_hbond_analysis[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_time[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_type[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_ids[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_hbonds_deprecated_attr[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_no_hydrogens[client_HydrogenBondAnalysis0] FAILED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3PStartStep::test_hbond_analysis[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3PStartStep::test_count_by_time[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3PStartStep::test_count_by_type[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisEmptySelections::test_hbond_analysis[client_HydrogenBondAnalysis0] FAILED [ 3%] testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_hbond_analysis[client_HydrogenBondAnalysis1] PASSED [ 3%] testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_time[client_HydrogenBondAnalysis1] PASSED [ 3%] testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_type[client_HydrogenBondAnalysis1] PASSED [ 3%] @@ -5352,21 +5388,21 @@ testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_wrong_weights PASSED [ 5%] testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_with_superposition_smaller PASSED [ 5%] testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_with_superposition_equal PASSED [ 5%] -testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd[client_RMSD0] PASSED [ 5%] -testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_frames[client_RMSD0] PASSED [ 5%] -testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_unicode_selection[client_RMSD0] PASSED [ 5%] -testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_atomgroup_selections[client_RMSD0] PASSED [ 5%] -testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_single_frame[client_RMSD0] PASSED [ 5%] -testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_mass_weighted[client_RMSD0] PASSED [ 5%] -testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_weighted[client_RMSD0] PASSED [ 5%] -testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_weights_mass_is_mass_weighted[client_RMSD0] PASSED [ 5%] -testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_weighted_list[client_RMSD0] PASSED [ 5%] -testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_groupselection_weights_applied_1D_array[client_RMSD0] PASSED [ 5%] -testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_groupselection_weights_applied_mass[client_RMSD0] PASSED [ 5%] -testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_group_selections[client_RMSD0] PASSED [ 5%] -testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_backbone_and_group_selection[client_RMSD0] PASSED [ 5%] -testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_ref_mobile_mass_mismapped[client_RMSD0] PASSED [ 5%] -testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_attr_warning[client_RMSD0] PASSED [ 5%] +testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd[client_RMSD0] FAILED [ 5%] +testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_frames[client_RMSD0] FAILED [ 5%] +testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_unicode_selection[client_RMSD0] FAILED [ 5%] +testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_atomgroup_selections[client_RMSD0] FAILED [ 5%] +testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_single_frame[client_RMSD0] FAILED [ 5%] +testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_mass_weighted[client_RMSD0] FAILED [ 5%] +testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_weighted[client_RMSD0] FAILED [ 5%] +testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_weights_mass_is_mass_weighted[client_RMSD0] FAILED [ 5%] +testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_weighted_list[client_RMSD0] FAILED [ 5%] +testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_groupselection_weights_applied_1D_array[client_RMSD0] FAILED [ 5%] +testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_groupselection_weights_applied_mass[client_RMSD0] FAILED [ 5%] +testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_group_selections[client_RMSD0] FAILED [ 5%] +testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_backbone_and_group_selection[client_RMSD0] FAILED [ 5%] +testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_ref_mobile_mass_mismapped[client_RMSD0] FAILED [ 5%] +testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_attr_warning[client_RMSD0] FAILED [ 5%] testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd[client_RMSD1] PASSED [ 5%] testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_frames[client_RMSD1] PASSED [ 5%] testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_unicode_selection[client_RMSD1] PASSED [ 5%] @@ -12124,7 +12160,7 @@ testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_header_twice PASSED [ 39%] testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_header_wrong_mode PASSED [ 39%] testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_mode PASSED [ 39%] -testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_remarks_property XPASS [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_remarks_property PASSED [ 39%] testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_header PASSED [ 39%] testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_num_frames PASSED [ 39%] testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_dcd_coordinate_data_shape PASSED [ 39%] @@ -21034,23 +21070,23 @@ testsuite/MDAnalysisTests/lib/test_util.py::test_is_installed[math-True] PASSED [ 85%] testsuite/MDAnalysisTests/lib/test_util.py::test_is_installed[sys-True] PASSED [ 85%] testsuite/MDAnalysisTests/lib/test_util.py::test_is_installed[some_weird_module_name-False] PASSED [ 85%] -testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u0] PASSED [ 85%] -testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u1] PASSED [ 85%] -testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u2] PASSED [ 85%] -testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u3] PASSED [ 85%] -testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u4] PASSED [ 85%] -testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u5] PASSED [ 85%] -testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u6] PASSED [ 85%] -testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u7] PASSED [ 85%] -testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u8] PASSED [ 85%] -testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u9] PASSED [ 85%] -testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u10] PASSED [ 85%] -testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u11] PASSED [ 85%] -testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u12] PASSED [ 85%] -testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u13] PASSED [ 85%] -testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u14] PASSED [ 85%] -testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_universe_unpickle_in_new_process PASSED [ 85%] -testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_creating_multiple_universe_without_offset PASSED [ 85%] +testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u0] FAILED [ 85%] +testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u1] FAILED [ 85%] +testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u2] FAILED [ 85%] +testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u3] FAILED [ 85%] +testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u4] FAILED [ 85%] +testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u5] FAILED [ 85%] +testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u6] FAILED [ 85%] +testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u7] FAILED [ 85%] +testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u8] FAILED [ 85%] +testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u9] FAILED [ 85%] +testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u10] FAILED [ 85%] +testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u11] FAILED [ 85%] +testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u12] FAILED [ 85%] +testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u13] FAILED [ 85%] +testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u14] FAILED [ 85%] +testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_universe_unpickle_in_new_process FAILED [ 85%] +testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_creating_multiple_universe_without_offset FAILED [ 85%] testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader0] PASSED [ 85%] testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader1] PASSED [ 85%] testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader2] PASSED [ 85%] @@ -21097,33 +21133,33 @@ testsuite/MDAnalysisTests/test_api.py::test_ResidueGroup PASSED [ 85%] testsuite/MDAnalysisTests/test_api.py::test_SegmentGroup PASSED [ 85%] testsuite/MDAnalysisTests/test_api.py::test_all_import[] PASSED [ 85%] +testsuite/MDAnalysisTests/test_api.py::test_all_import[.coordinates] PASSED [ 85%] +testsuite/MDAnalysisTests/test_api.py::test_all_import[.selections] PASSED [ 85%] testsuite/MDAnalysisTests/test_api.py::test_all_import[.converters] PASSED [ 85%] +testsuite/MDAnalysisTests/test_api.py::test_all_import[.visualization] PASSED [ 85%] +testsuite/MDAnalysisTests/test_api.py::test_all_import[.tests] PASSED [ 85%] testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis] PASSED [ 85%] -testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis.hbonds] PASSED [ 85%] -testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis.legacy] PASSED [ 85%] -testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis.dssp] PASSED [ 85%] testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis.encore] PASSED [ 85%] -testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis.encore.dimensionality_reduction] PASSED [ 85%] testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis.encore.clustering] PASSED [ 85%] +testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis.encore.dimensionality_reduction] PASSED [ 85%] +testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis.hbonds] PASSED [ 85%] +testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis.dssp] PASSED [ 85%] testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis.hydrogenbonds] PASSED [ 85%] +testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis.legacy] PASSED [ 85%] testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis.data] PASSED [ 85%] +testsuite/MDAnalysisTests/test_api.py::test_all_import[.auxiliary] PASSED [ 85%] +testsuite/MDAnalysisTests/test_api.py::test_all_import[.transformations] PASSED [ 85%] testsuite/MDAnalysisTests/test_api.py::test_all_import[.topology] PASSED [ 85%] testsuite/MDAnalysisTests/test_api.py::test_all_import[.topology.tpr] PASSED [ 85%] -testsuite/MDAnalysisTests/test_api.py::test_all_import[.guesser] PASSED [ 85%] -testsuite/MDAnalysisTests/test_api.py::test_all_import[.visualization] PASSED [ 85%] -testsuite/MDAnalysisTests/test_api.py::test_all_import[.tests] PASSED [ 85%] -testsuite/MDAnalysisTests/test_api.py::test_all_import[.transformations] PASSED [ 85%] -testsuite/MDAnalysisTests/test_api.py::test_all_import[.core] PASSED [ 85%] testsuite/MDAnalysisTests/test_api.py::test_all_import[.lib] PASSED [ 85%] testsuite/MDAnalysisTests/test_api.py::test_all_import[.lib.formats] PASSED [ 85%] testsuite/MDAnalysisTests/test_api.py::test_all_import[.lib.formats.src] PASSED [ 85%] testsuite/MDAnalysisTests/test_api.py::test_all_import[.lib.formats.include] PASSED [ 85%] -testsuite/MDAnalysisTests/test_api.py::test_all_import[.lib.libmdanalysis] PASSED [ 85%] testsuite/MDAnalysisTests/test_api.py::test_all_import[.lib.src.transformations] PASSED [ 85%] +testsuite/MDAnalysisTests/test_api.py::test_all_import[.lib.libmdanalysis] PASSED [ 85%] testsuite/MDAnalysisTests/test_api.py::test_all_import[.lib.include] PASSED [ 85%] -testsuite/MDAnalysisTests/test_api.py::test_all_import[.coordinates] PASSED [ 85%] -testsuite/MDAnalysisTests/test_api.py::test_all_import[.selections] PASSED [ 85%] -testsuite/MDAnalysisTests/test_api.py::test_all_import[.auxiliary] PASSED [ 85%] +testsuite/MDAnalysisTests/test_api.py::test_all_import[.core] PASSED [ 85%] +testsuite/MDAnalysisTests/test_api.py::test_all_import[.guesser] PASSED [ 85%] testsuite/MDAnalysisTests/topology/test_altloc.py::test_atomgroups PASSED [ 85%] testsuite/MDAnalysisTests/topology/test_altloc.py::test_bonds PASSED [ 85%] testsuite/MDAnalysisTests/topology/test_altloc.py::test_write_read PASSED [ 85%] @@ -23433,219 +23469,219 @@ testsuite/MDAnalysisTests/utils/test_duecredit.py::TestDuecredit::test_duecredit_mmtf PASSED [ 97%] testsuite/MDAnalysisTests/utils/test_duecredit.py::TestDuecredit::test_duecredit_h5md PASSED [ 97%] testsuite/MDAnalysisTests/utils/test_failure.py::test_failure PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/datafiles.py] PASSED [ 97%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/test_api.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/dummy.py] PASSED [ 97%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/__init__.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/datafiles.py] PASSED [ 97%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/util.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/dummy.py] PASSED [ 97%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/formats/test_libmdaxdr.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/formats/test_libdcd.py] PASSED [ 97%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/formats/__init__.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/converters/test_parmed.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/formats/test_libdcd.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/reference.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_crd.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_writer_api.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_timestep_api.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_writer_registration.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_dms.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_gro.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_pdbqt.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_gms.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_memory.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_mmtf.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_trc.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_mol2.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_null.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_namdbin.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_txyz.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/base.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_windows.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_amber_inpcrd.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_xyz.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/__init__.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_h5md.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_dcd.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_gsd.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_fhiaims.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_reader_api.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_pqr.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_chemfiles.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_chainreader.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_copying.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_xdr.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_lammps.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_trj.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_netcdf.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_tng.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_trz.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_pdb.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_dlpoly.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/parallelism/__init__.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py] PASSED [ 97%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/converters/test_openmm_parser.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/converters/test_openmm.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/converters/test_parmed_parser.py] PASSED [ 97%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/converters/test_rdkit_parser.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/converters/__init__.py] PASSED [ 97%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/converters/test_rdkit.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/converters/test_parmed_parser.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/converters/__init__.py] PASSED [ 97%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/converters/test_base.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_rms.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_pca.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_gnm.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_persistencelength.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_psa.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_atomicdistances.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_nucleicacids.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_diffusionmap.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_dssp.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_align.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/converters/test_openmm.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/converters/test_parmed.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/import/__init__.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/import/fork_called.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/import/test_import.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/visualization/__init__.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/visualization/test_streamlines.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_distances.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_waterdynamics.py] PASSED [ 97%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_encore.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/conftest.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_nuclinfo.py] PASSED [ 97%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_helix_analysis.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_dielectric.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_contacts.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_nuclinfo.py] PASSED [ 97%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_leaflet.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_msd.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_lineardensity.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_distances.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_waterdynamics.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_data.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_wbridge.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_density.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_rms.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_dielectric.py] PASSED [ 97%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_rdf.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_backends.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_dihedrals.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_align.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_persistencelength.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_data.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_diffusionmap.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/conftest.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_dssp.py] PASSED [ 97%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_bat.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_results.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_msd.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_contacts.py] PASSED [ 97%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_rdf_s.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_nucleicacids.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_results.py] PASSED [ 97%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/__init__.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_dihedrals.py] PASSED [ 97%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_base.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_pca.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_wbridge.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_density.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_backends.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_gnm.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_lineardensity.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_atomicdistances.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py] PASSED [ 97%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hole2.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_itp.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_topology_base.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_minimal.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_psa.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/auxiliary/test_core.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/auxiliary/base.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/auxiliary/__init__.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/auxiliary/test_xvg.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/auxiliary/test_edr.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/transformations/test_fit.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/transformations/test_nojump.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/transformations/test_rotate.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/transformations/__init__.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/transformations/test_base.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/transformations/test_boxdimensions.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/transformations/test_positionaveraging.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/transformations/test_translate.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/transformations/test_wrap.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_topology_str_types.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_crd.py] PASSED [ 97%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_guessers.py] PASSED [ 97%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_dms.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_gro.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_pdbqt.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_hoomdxml.py] PASSED [ 97%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_gms.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_topology_str_types.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_mmtf.py] PASSED [ 97%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_mol2.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_crd.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_pdb.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_pqr.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_lammpsdata.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_hoomdxml.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_pdbqt.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_altloc.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_txyz.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/base.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_gro.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_xpdb.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_itp.py] PASSED [ 97%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_psf.py] PASSED [ 97%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_tables.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_mmtf.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_fhiaims.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_xyz.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/__init__.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_xpdb.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_txyz.py] PASSED [ 97%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_top.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_gsd.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_dlpoly.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_tprparser.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/guesser/test_default_guesser.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/guesser/test_base.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/visualization/test_streamlines.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/visualization/__init__.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/transformations/test_fit.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/transformations/test_positionaveraging.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/transformations/test_wrap.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/transformations/test_boxdimensions.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/transformations/test_translate.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/transformations/test_nojump.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/transformations/test_rotate.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/transformations/__init__.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/transformations/test_base.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/test_authors.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/test_log.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/test_persistence.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/test_streamio.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/test_datafiles.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/test_failure.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/test_selections.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/test_pickleio.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/test_meta.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/test_transformations.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/test_duecredit.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/test_modelling.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/__init__.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/test_qcprot.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/test_imports.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/test_units.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_copying.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_universe.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_wrap.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_group_traj_access.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_residuegroup.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_groups.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_fragments.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_accessors.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_atomgroup.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_segmentgroup.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_updating_atomgroup.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_topologyobjects.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_topology.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_residue.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_topologyattrs.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/__init__.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/util.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_atom.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_unwrap.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_requires.py] PASSED [ 97%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_atomselections.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_segment.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_index_dtype.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_accumulate.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/lib/test_cutil.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/lib/test_log.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/lib/test_augment.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/base.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_xyz.py] PASSED [ 97%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_lammpsdata.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_minimal.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/__init__.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_gsd.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_fhiaims.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_pqr.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_tprparser.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_altloc.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_topology_base.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_pdb.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/topology/test_dlpoly.py] PASSED [ 98%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/lib/test_distances.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/lib/test_util.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/lib/test_augment.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/lib/test_qcprot.py] PASSED [ 98%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/lib/test_nsgrid.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/lib/test_cutil.py] PASSED [ 98%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/lib/__init__.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/lib/test_qcprot.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/lib/test_pkdtree.py] PASSED [ 98%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/lib/test_neighborsearch.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/import/fork_called.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/import/test_import.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/import/__init__.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_timestep_api.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_amber_inpcrd.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_copying.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_dms.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_null.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_trz.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_gms.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_mol2.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_crd.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_namdbin.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_dcd.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_pdb.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_tng.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_h5md.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_pqr.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_writer_api.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_pdbqt.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_txyz.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_lammps.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_windows.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/base.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_gro.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_reader_api.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_chemfiles.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_mmtf.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_trj.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_chainreader.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/reference.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_trc.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_xdr.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_fhiaims.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_netcdf.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_xyz.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_memory.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/__init__.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_writer_registration.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_gsd.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/coordinates/test_dlpoly.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/__init__.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/gromos11/__init__.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/analysis/__init__.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/contacts/__init__.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/merge/__init__.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/merge/2zmm/__init__.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/lib/test_log.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/lib/test_util.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/lib/test_pkdtree.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/coordinates/create_data.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/coordinates/create_h5md_data.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/coordinates/__init__.py] PASSED [ 98%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/gromacs/__init__.py] PASSED [ 98%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/__init__.py] PASSED [ 98%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/mol2/__init__.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/analysis/__init__.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/capping/__init__.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/merge/__init__.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/merge/2zmm/__init__.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/gromos11/__init__.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/windows/__init__.py] PASSED [ 98%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/tprs/__init__.py] PASSED [ 98%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/tprs/virtual_sites/__init__.py] PASSED [ 98%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/tprs/all_bonded/__init__.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/gms/__init__.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/contacts/__init__.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/__init__.py] PASSED [ 98%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/Amber/__init__.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/windows/__init__.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/capping/__init__.py] PASSED [ 98%] testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dlpoly/__init__.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/coordinates/create_h5md_data.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/coordinates/create_data.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/coordinates/__init__.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/gms/__init__.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/parallelism/__init__.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/auxiliary/test_xvg.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/auxiliary/test_core.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/auxiliary/base.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/auxiliary/test_edr.py] PASSED [ 98%] -testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/auxiliary/__init__.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_universe.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_topologyattrs.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_residuegroup.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_atomselections.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_updating_atomgroup.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_topology.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_accessors.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_topologyobjects.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_accumulate.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_segment.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_fragments.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_atom.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_index_dtype.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_groups.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_segmentgroup.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_unwrap.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/__init__.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_group_traj_access.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_requires.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_copying.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_wrap.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_residue.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/util.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/core/test_atomgroup.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/test_meta.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/test_selections.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/test_transformations.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/test_modelling.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/test_qcprot.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/test_persistence.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/test_authors.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/test_imports.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/test_failure.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/test_datafiles.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/__init__.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/test_units.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/test_log.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/test_pickleio.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/test_duecredit.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/utils/test_streamio.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/guesser/test_base.py] PASSED [ 98%] +testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/guesser/test_default_guesser.py] PASSED [ 98%] testsuite/MDAnalysisTests/utils/test_log.py::test_start_stop_logging PASSED [ 98%] testsuite/MDAnalysisTests/utils/test_meta.py::test_import PASSED [ 98%] testsuite/MDAnalysisTests/utils/test_meta.py::test_matching_versions PASSED [ 98%] @@ -23954,97 +23990,11412 @@ testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_unit_unknown[12.34567-nm-Stone] PASSED [ 99%] testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_unit_unconvertable PASSED [ 99%] testsuite/MDAnalysisTests/utils/test_units.py::TestBaseUnits::test_MDANALYSIS_BASE_UNITS_correct PASSED [ 99%] -testsuite/MDAnalysisTests/visualization/test_streamlines.py::test_streamplot_2D PASSED [ 99%] -testsuite/MDAnalysisTests/visualization/test_streamlines.py::test_streamplot_2D_zero_return PASSED [ 99%] -testsuite/MDAnalysisTests/visualization/test_streamlines.py::test_streamplot_3D PASSED [100%] - -= 19103 passed, 558 skipped, 2 deselected, 7 xfailed, 3 xpassed, 170226 warnings in 3012.99s (0:50:12) = -2025-03-03 11:19:21,569 [WARNING] DueCredit internal failure while running : PermissionError(13, 'Permission denied'). Please report to developers at https://github.com/duecredit/duecredit/issues (utils.py:211) - -DueCredit Report: -- Molecular simulation analysis library / MDAnalysis (v 2.8.0) [1, 2] - - Iterative Calculation of Opimal Reference / MDAnalysis.analysis.align.iterative_average (v 2.8.0) [3] - - Bond-Angle-Torsions Coordinate Transformation / MDAnalysis.analysis.bat.BAT (v 2.8.0) [4] - - Dielectric analysis / MDAnalysis.analysis.dielectric (v 2.8.0) [5] - - DSSP algorithm description / MDAnalysis.analysis.dssp (v 2.8.0) [6] - - ENCORE Ensemble Comparison / MDAnalysis.analysis.encore (v 2.8.0) [7] - - Hydrogen bond analysis implementation / MDAnalysis.analysis.hydrogenbonds.hbond_analysis (v 2.8.0) [8] - - Hydrogen bonding autocorrelation time / MDAnalysis.analysis.hydrogenbonds.hbond_autocorrel (v 2.8.0) [9] - - LeafletFinder algorithm / MDAnalysis.analysis.leaflet (v 2.8.0) [2] - - FCA fast correlation algorithm, Mean Squared Displacements with tidynamics / MDAnalysis.analysis.msd (v 2.8.0) [10, 11] - - Cumulative overlap / MDAnalysis.analysis.pca (v 2.8.0) [12] - - Specifications of the H5MD standard, MDAnalysis trajectory reader/writer of the H5MDformat / MDAnalysis.coordinates.H5MD (v 1.1, 2.8.0) [13, 14] - - MMTF Reader / MDAnalysis.coordinates.MMTF (v 2.8.0) [15] - - The TNG paper / MDAnalysis.coordinates.TNG (v 2.8.0) [16] - - QCProt implementation / MDAnalysis.lib.qcprot (v 2.8.0) [17, 18] - - MMTF Parser / MDAnalysis.topology.MMTFParser (v 2.8.0) [15] - - Works through the orthogonal case for unwrapping, and proposes the non-orthogonal approach. / MDAnalysis.transformations.nojump (v 2.8.0) [19] -- Scientific tools library / numpy (v 2.2.3) [20] - -2 packages cited -16 modules cited -0 functions cited - -References ----------- - -[1] make[1]: Leaving directory '/build/reproducible-path/mdanalysis-2.8.0' - create-stamp debian/debhelper-build-stamp - dh_testroot -O--buildsystem=pybuild - dh_prep -O--buildsystem=pybuild - dh_auto_install -O--buildsystem=pybuild -I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir - dh_installdocs -O--buildsystem=pybuild -dh_installdocs: warning: Cannot auto-detect main package for python-mdanalysis-doc. If the default is wrong, please use --doc-main-package - dh_sphinxdoc -O--buildsystem=pybuild - dh_installchangelogs -O--buildsystem=pybuild - dh_python3 -O--buildsystem=pybuild -I: dh_python3 pydist:316: Cannot find package that provides waterdynamics. Please add package that provides it to Build-Depends or add "waterdynamics python3-waterdynamics" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. -I: dh_python3 pydist:316: Cannot find package that provides pathsimanalysis. Please add package that provides it to Build-Depends or add "pathsimanalysis python3-pathsimanalysis" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. -I: dh_python3 pydist:316: Cannot find package that provides mdahole2. Please add package that provides it to Build-Depends or add "mdahole2 python3-mdahole2" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. - debian/rules execute_after_dh_python3 -make[1]: Entering directory '/build/reproducible-path/mdanalysis-2.8.0' -dh_numpy3 -Possible precedence issue with control flow operator (return) at /usr/bin/dh_numpy3 line 57. -rm -rf debian/python3-mdanalysis/usr/lib/python3.* -make[1]: Leaving directory '/build/reproducible-path/mdanalysis-2.8.0' - dh_installsystemduser -O--buildsystem=pybuild - dh_perl -O--buildsystem=pybuild - dh_link -O--buildsystem=pybuild - dh_strip_nondeterminism -O--buildsystem=pybuild - dh_compress -O--buildsystem=pybuild - dh_fixperms -O--buildsystem=pybuild - dh_missing -O--buildsystem=pybuild - dh_dwz -a -O--buildsystem=pybuild - dh_strip -a -O--buildsystem=pybuild - dh_makeshlibs -a -O--buildsystem=pybuild - dh_shlibdeps -a -O--buildsystem=pybuild -dpkg-shlibdeps: warning: diversions involved - output may be incorrect - diversion by libc6 from: /lib/ld-linux-armhf.so.3 -dpkg-shlibdeps: warning: diversions involved - output may be incorrect - diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged - dh_installdeb -O--buildsystem=pybuild - dh_gencontrol -O--buildsystem=pybuild -dpkg-gencontrol: warning: package python-mdanalysis-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined - dh_md5sums -O--buildsystem=pybuild - dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'python3-mdanalysis-dbgsym' in '../python3-mdanalysis-dbgsym_2.8.0-4_armhf.deb'. -dpkg-deb: building package 'python3-mdanalysis' in '../python3-mdanalysis_2.8.0-4_armhf.deb'. -dpkg-deb: building package 'python-mdanalysis-doc' in '../python-mdanalysis-doc_2.8.0-4_all.deb'. - dpkg-genbuildinfo --build=binary -O../mdanalysis_2.8.0-4_armhf.buildinfo - dpkg-genchanges --build=binary -O../mdanalysis_2.8.0-4_armhf.changes -dpkg-genchanges: info: binary-only upload (no source code included) - dpkg-source --after-build . -dpkg-source: info: using options from mdanalysis-2.8.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ -dpkg-buildpackage: info: binary-only upload (no source included) -dpkg-genchanges: info: not including original source code in upload -I: copying local configuration -I: unmounting dev/ptmx filesystem -I: unmounting dev/pts filesystem -I: unmounting dev/shm filesystem -I: unmounting proc filesystem -I: unmounting sys filesystem -I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/18709 and its subdirectories -I: Current time: Mon Mar 3 11:20:25 -12 2025 -I: pbuilder-time-stamp: 1741044025 +testsuite/MDAnalysisTests/visualization/test_streamlines.py::test_streamplot_2D FAILED [ 99%] +testsuite/MDAnalysisTests/visualization/test_streamlines.py::test_streamplot_2D_zero_return FAILED [ 99%] +testsuite/MDAnalysisTests/visualization/test_streamlines.py::test_streamplot_3D FAILED [100%] + +==================================== ERRORS ==================================== +_ ERROR at setup of TestHydrogenBondAnalysisTIP3P.test_hbond_analysis[client_HydrogenBondAnalysis0] _ + +self = +universe = +client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + @pytest.fixture(scope='class') + def h(self, universe, client_HydrogenBondAnalysis): + h = HydrogenBondAnalysis(universe, **self.kwargs) +> h.run(**client_HydrogenBondAnalysis) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:58: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_ ERROR at setup of TestHydrogenBondAnalysisTIP3P.test_count_by_time[client_HydrogenBondAnalysis0] _ + +self = +universe = +client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + @pytest.fixture(scope='class') + def h(self, universe, client_HydrogenBondAnalysis): + h = HydrogenBondAnalysis(universe, **self.kwargs) +> h.run(**client_HydrogenBondAnalysis) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:58: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_ ERROR at setup of TestHydrogenBondAnalysisTIP3P.test_count_by_type[client_HydrogenBondAnalysis0] _ + +self = +universe = +client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + @pytest.fixture(scope='class') + def h(self, universe, client_HydrogenBondAnalysis): + h = HydrogenBondAnalysis(universe, **self.kwargs) +> h.run(**client_HydrogenBondAnalysis) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:58: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_ ERROR at setup of TestHydrogenBondAnalysisTIP3P.test_count_by_ids[client_HydrogenBondAnalysis0] _ + +self = +universe = +client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + @pytest.fixture(scope='class') + def h(self, universe, client_HydrogenBondAnalysis): + h = HydrogenBondAnalysis(universe, **self.kwargs) +> h.run(**client_HydrogenBondAnalysis) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:58: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_ ERROR at setup of TestHydrogenBondAnalysisTIP3P.test_hbonds_deprecated_attr[client_HydrogenBondAnalysis0] _ + +self = +universe = +client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + @pytest.fixture(scope='class') + def h(self, universe, client_HydrogenBondAnalysis): + h = HydrogenBondAnalysis(universe, **self.kwargs) +> h.run(**client_HydrogenBondAnalysis) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:58: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_ ERROR at setup of TestHydrogenBondAnalysisIdeal.test_count_by_type[client_HydrogenBondAnalysis0] _ + +universe = +client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + @staticmethod + @pytest.fixture(scope='class') + def hydrogen_bonds(universe, client_HydrogenBondAnalysis): + h = HydrogenBondAnalysis( + universe, + **TestHydrogenBondAnalysisIdeal.kwargs + ) +> h.run(**client_HydrogenBondAnalysis) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:189: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_ ERROR at setup of TestHydrogenBondAnalysisIdeal.test_first_hbond[client_HydrogenBondAnalysis0] _ + +universe = +client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + @staticmethod + @pytest.fixture(scope='class') + def hydrogen_bonds(universe, client_HydrogenBondAnalysis): + h = HydrogenBondAnalysis( + universe, + **TestHydrogenBondAnalysisIdeal.kwargs + ) +> h.run(**client_HydrogenBondAnalysis) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:189: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_ ERROR at setup of TestHydrogenBondAnalysisIdeal.test_count_by_time[client_HydrogenBondAnalysis0] _ + +universe = +client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + @staticmethod + @pytest.fixture(scope='class') + def hydrogen_bonds(universe, client_HydrogenBondAnalysis): + h = HydrogenBondAnalysis( + universe, + **TestHydrogenBondAnalysisIdeal.kwargs + ) +> h.run(**client_HydrogenBondAnalysis) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:189: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_ ERROR at setup of TestHydrogenBondAnalysisIdeal.test_hydrogen_bond_lifetime[client_HydrogenBondAnalysis0] _ + +universe = +client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + @staticmethod + @pytest.fixture(scope='class') + def hydrogen_bonds(universe, client_HydrogenBondAnalysis): + h = HydrogenBondAnalysis( + universe, + **TestHydrogenBondAnalysisIdeal.kwargs + ) +> h.run(**client_HydrogenBondAnalysis) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:189: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_ ERROR at setup of TestHydrogenBondAnalysisIdeal.test_hydrogen_bond_lifetime_intermittency[client_HydrogenBondAnalysis0] _ + +universe = +client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + @staticmethod + @pytest.fixture(scope='class') + def hydrogen_bonds(universe, client_HydrogenBondAnalysis): + h = HydrogenBondAnalysis( + universe, + **TestHydrogenBondAnalysisIdeal.kwargs + ) +> h.run(**client_HydrogenBondAnalysis) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:189: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_ ERROR at setup of TestHydrogenBondAnalysisNoRes.test_count_by_type[client_HydrogenBondAnalysis0] _ + +universe = +client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + @staticmethod + @pytest.fixture(scope='class') + def hydrogen_bonds(universe, client_HydrogenBondAnalysis): + h = HydrogenBondAnalysis( + universe, + **TestHydrogenBondAnalysisNoRes.kwargs + ) +> h.run(**client_HydrogenBondAnalysis) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:354: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_ ERROR at setup of TestHydrogenBondAnalysisNoRes.test_first_hbond[client_HydrogenBondAnalysis0] _ + +universe = +client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + @staticmethod + @pytest.fixture(scope='class') + def hydrogen_bonds(universe, client_HydrogenBondAnalysis): + h = HydrogenBondAnalysis( + universe, + **TestHydrogenBondAnalysisNoRes.kwargs + ) +> h.run(**client_HydrogenBondAnalysis) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:354: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_ ERROR at setup of TestHydrogenBondAnalysisNoRes.test_count_by_time[client_HydrogenBondAnalysis0] _ + +universe = +client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + @staticmethod + @pytest.fixture(scope='class') + def hydrogen_bonds(universe, client_HydrogenBondAnalysis): + h = HydrogenBondAnalysis( + universe, + **TestHydrogenBondAnalysisNoRes.kwargs + ) +> h.run(**client_HydrogenBondAnalysis) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:354: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_ ERROR at setup of TestHydrogenBondAnalysisNoRes.test_hydrogen_bond_lifetime[client_HydrogenBondAnalysis0] _ + +universe = +client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + @staticmethod + @pytest.fixture(scope='class') + def hydrogen_bonds(universe, client_HydrogenBondAnalysis): + h = HydrogenBondAnalysis( + universe, + **TestHydrogenBondAnalysisNoRes.kwargs + ) +> h.run(**client_HydrogenBondAnalysis) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:354: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_ ERROR at setup of TestHydrogenBondAnalysisNoRes.test_hydrogen_bond_lifetime_intermittency[client_HydrogenBondAnalysis0] _ + +universe = +client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + @staticmethod + @pytest.fixture(scope='class') + def hydrogen_bonds(universe, client_HydrogenBondAnalysis): + h = HydrogenBondAnalysis( + universe, + **TestHydrogenBondAnalysisNoRes.kwargs + ) +> h.run(**client_HydrogenBondAnalysis) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:354: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_ ERROR at setup of TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_.test_hbond_analysis[client_HydrogenBondAnalysis0] _ + +self = +universe = +client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + @pytest.fixture(scope='class') + def h(self, universe, client_HydrogenBondAnalysis): + h = HydrogenBondAnalysis(universe, **self.kwargs) +> h.run(**client_HydrogenBondAnalysis) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:58: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_ ERROR at setup of TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_.test_count_by_time[client_HydrogenBondAnalysis0] _ + +self = +universe = +client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + @pytest.fixture(scope='class') + def h(self, universe, client_HydrogenBondAnalysis): + h = HydrogenBondAnalysis(universe, **self.kwargs) +> h.run(**client_HydrogenBondAnalysis) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:58: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_ ERROR at setup of TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_.test_count_by_type[client_HydrogenBondAnalysis0] _ + +self = +universe = +client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + @pytest.fixture(scope='class') + def h(self, universe, client_HydrogenBondAnalysis): + h = HydrogenBondAnalysis(universe, **self.kwargs) +> h.run(**client_HydrogenBondAnalysis) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:58: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_ ERROR at setup of TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_.test_count_by_ids[client_HydrogenBondAnalysis0] _ + +self = +universe = +client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + @pytest.fixture(scope='class') + def h(self, universe, client_HydrogenBondAnalysis): + h = HydrogenBondAnalysis(universe, **self.kwargs) +> h.run(**client_HydrogenBondAnalysis) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:58: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_ ERROR at setup of TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_.test_hbonds_deprecated_attr[client_HydrogenBondAnalysis0] _ + +self = +universe = +client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + @pytest.fixture(scope='class') + def h(self, universe, client_HydrogenBondAnalysis): + h = HydrogenBondAnalysis(universe, **self.kwargs) +> h.run(**client_HydrogenBondAnalysis) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:58: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_ ERROR at setup of TestHydrogenBondAnalysisTIP3PStartStep.test_hbond_analysis[client_HydrogenBondAnalysis0] _ + +self = +universe = +client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + @pytest.fixture(scope='class') + def h(self, universe, client_HydrogenBondAnalysis): + h = HydrogenBondAnalysis(universe, **self.kwargs) +> h.run(**client_HydrogenBondAnalysis, start=1, step=2) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:638: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_ ERROR at setup of TestHydrogenBondAnalysisTIP3PStartStep.test_count_by_time[client_HydrogenBondAnalysis0] _ + +self = +universe = +client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + @pytest.fixture(scope='class') + def h(self, universe, client_HydrogenBondAnalysis): + h = HydrogenBondAnalysis(universe, **self.kwargs) +> h.run(**client_HydrogenBondAnalysis, start=1, step=2) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:638: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_ ERROR at setup of TestHydrogenBondAnalysisTIP3PStartStep.test_count_by_type[client_HydrogenBondAnalysis0] _ + +self = +universe = +client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + @pytest.fixture(scope='class') + def h(self, universe, client_HydrogenBondAnalysis): + h = HydrogenBondAnalysis(universe, **self.kwargs) +> h.run(**client_HydrogenBondAnalysis, start=1, step=2) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:638: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +=================================== FAILURES =================================== +________________________ test_trajectory[client_DSSP0] _________________________ + +client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} + + def test_trajectory(client_DSSP): + u = mda.Universe(TPR, XTC).select_atoms("protein").universe +> run = DSSP(u).run(**client_DSSP, stop=10) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_dssp.py:25: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +/usr/lib/python3.13/multiprocessing/process.py:121: in start + self._popen = self._Popen(self) +/usr/lib/python3.13/multiprocessing/context.py:282: in _Popen + return Popen(process_obj) +/usr/lib/python3.13/multiprocessing/popen_fork.py:20: in __init__ + self._launch(process_obj) +/usr/lib/python3.13/multiprocessing/popen_fork.py:76: in _launch + atexit._run_exitfuncs() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +n = 15 +f = + +> signal.signal(signal.SIGTERM, lambda n, f: sys.exit(1)) +E SystemExit: 1 + +/usr/lib/python3/dist-packages/gsd/__init__.py:25: SystemExit +_________________________ test_atomgroup[client_DSSP0] _________________________ + +client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} + + def test_atomgroup(client_DSSP): + protein = mda.Universe(TPR, XTC).select_atoms("protein") +> run = DSSP(protein).run(**client_DSSP, stop=10) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_dssp.py:37: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_________________ test_trajectory_with_hydrogens[client_DSSP0] _________________ + +client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} + + def test_trajectory_with_hydrogens(client_DSSP): + u = mda.Universe(TPR, XTC).select_atoms("protein").universe +> run = DSSP(u, guess_hydrogens=False).run(**client_DSSP, stop=10) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_dssp.py:47: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_____________________ TestEncore.test_parallel_calculation _____________________ + +self = + + @pytest.mark.xfail(os.name == 'nt', + reason="Not yet supported on Windows.") + def test_parallel_calculation(self): + + arguments = [tuple([i]) for i in np.arange(0,100)] + + parallel_calculation = encore.utils.ParallelCalculation(function=function, + n_jobs=4, + args=arguments) +> results = parallel_calculation.run() + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_encore.py:139: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/encore/utils.py:300: in run + manager = Manager() +/usr/lib/python3.13/multiprocessing/context.py:57: in Manager + m.start() +/usr/lib/python3.13/multiprocessing/managers.py:565: in start + self._process.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +________________________ test_gnm[client_GNMAnalysis0] _________________________ + +universe = +tmpdir = local('/tmp/pytest-of-pbuilder2/pytest-0/test_gnm_client_GNMAnalysis0_0') +client_GNMAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + def test_gnm(universe, tmpdir, client_GNMAnalysis): + output = os.path.join(str(tmpdir), 'output.txt') + gnm = mda.analysis.gnm.GNMAnalysis(universe, ReportVector=output) +> gnm.run(**client_GNMAnalysis) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_gnm.py:44: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +____________________ test_gnm_run_step[client_GNMAnalysis0] ____________________ + +universe = +client_GNMAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + def test_gnm_run_step(universe, client_GNMAnalysis): + gnm = mda.analysis.gnm.GNMAnalysis(universe) +> gnm.run(step=3, **client_GNMAnalysis) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_gnm.py:56: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +______________ test_closeContactGNMAnalysis[client_GNMAnalysis0] _______________ + +universe = +client_GNMAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + def test_closeContactGNMAnalysis(universe, client_GNMAnalysis): + gnm = mda.analysis.gnm.closeContactGNMAnalysis(universe, weights="size") +> gnm.run(stop=2, **client_GNMAnalysis) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_gnm.py:93: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +________ test_closeContactGNMAnalysis_weights_None[client_GNMAnalysis0] ________ + +universe = +client_GNMAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + def test_closeContactGNMAnalysis_weights_None(universe, client_GNMAnalysis): + gnm = mda.analysis.gnm.closeContactGNMAnalysis(universe, weights=None) +> gnm.run(stop=2, **client_GNMAnalysis) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_gnm.py:119: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_ TestHydrogenBondAnalysisIdeal.test_logging_step_not_1[client_HydrogenBondAnalysis0] _ + +self = +universe = +caplog = <_pytest.logging.LogCaptureFixture object at 0x8355e258> +client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + def test_logging_step_not_1(self, universe, caplog, + client_HydrogenBondAnalysis): + hbonds = HydrogenBondAnalysis(universe, **self.kwargs) + # using step 2 +> hbonds.run(**client_HydrogenBondAnalysis, step=2) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:273: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_ TestHydrogenBondAnalysisNoRes.test_logging_step_not_1[client_HydrogenBondAnalysis0] _ + +self = +universe = +caplog = <_pytest.logging.LogCaptureFixture object at 0xa9e84b30> +client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + def test_logging_step_not_1(self, universe, caplog, + client_HydrogenBondAnalysis): + hbonds = HydrogenBondAnalysis(universe, **self.kwargs) + # using step 2 +> hbonds.run(**client_HydrogenBondAnalysis, step=2) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:273: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_ TestHydrogenBondAnalysisBetween.test_between_all[client_HydrogenBondAnalysis0] _ + +self = +universe = +client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + def test_between_all(self, universe, client_HydrogenBondAnalysis): + # don't specify groups between which to find hydrogen bonds + hbonds = HydrogenBondAnalysis(universe, between=None, **self.kwargs) +> hbonds.run(**client_HydrogenBondAnalysis) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:451: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_ TestHydrogenBondAnalysisBetween.test_between_PW[client_HydrogenBondAnalysis0] _ + +self = +universe = +client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + def test_between_PW(self, universe, client_HydrogenBondAnalysis): + # Find only protein-water hydrogen bonds + hbonds = HydrogenBondAnalysis( + universe, + between=["resname PROT", "resname SOL"], + **self.kwargs + ) +> hbonds.run(**client_HydrogenBondAnalysis) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:471: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_ TestHydrogenBondAnalysisBetween.test_between_PW_PP[client_HydrogenBondAnalysis0] _ + +self = +universe = +client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + def test_between_PW_PP(self, universe, client_HydrogenBondAnalysis): + # Find protein-water and protein-protein hydrogen bonds (not + # water-water) + hbonds = HydrogenBondAnalysis( + universe, + between=[ + ["resname PROT", "resname SOL"], + ["resname PROT", "resname PROT"] + ], + **self.kwargs + ) +> hbonds.run(**client_HydrogenBondAnalysis) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:493: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_ TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_.test_no_hydrogens[client_HydrogenBondAnalysis0] _ + +self = +universe = +client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + def test_no_hydrogens(self, universe, client_HydrogenBondAnalysis): + # If no hydrogens are identified at a given frame, check an + # empty donor atom group is created + test_kwargs = TestHydrogenBondAnalysisTIP3P.kwargs.copy() + test_kwargs['donors_sel'] = None # use topology to find pairs + test_kwargs['hydrogens_sel'] = "name H" # no atoms have name H + + h = HydrogenBondAnalysis(universe, **test_kwargs) +> h.run(**client_HydrogenBondAnalysis) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:527: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_ TestHydrogenBondAnalysisEmptySelections.test_hbond_analysis[client_HydrogenBondAnalysis0] _ + +self = +universe = +client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} + + def test_hbond_analysis(self, universe, client_HydrogenBondAnalysis): + + h = HydrogenBondAnalysis(universe, donors_sel=' ', hydrogens_sel=' ', + acceptors_sel=' ') +> h.run(**client_HydrogenBondAnalysis) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:701: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_______________________ TestRMSD.test_rmsd[client_RMSD0] _______________________ + +self = +universe = +correct_values = [[0, 1, 0], [49, 50, 4.68953]] +client_RMSD = {'backend': 'multiprocessing', 'n_workers': 2} + + def test_rmsd(self, universe, correct_values, client_RMSD): + # client_RMSD is defined in testsuite/analysis/conftest.py + # among with other testing fixtures. During testing, it will + # collect all possible backends and reasonable number of workers + # for a given AnalysisBase subclass, and extend the tests + # to run with all of them. + RMSD = MDAnalysis.analysis.rms.RMSD(universe, select='name CA') +> RMSD.run(step=49, **client_RMSD) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_rms.py:196: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +___________________ TestRMSD.test_rmsd_frames[client_RMSD0] ____________________ + +self = +universe = +correct_values = [[0, 1, 0], [49, 50, 4.68953]] +client_RMSD = {'backend': 'multiprocessing', 'n_workers': 2} + + def test_rmsd_frames(self, universe, correct_values, client_RMSD): + RMSD = MDAnalysis.analysis.rms.RMSD(universe, select='name CA') +> RMSD.run(frames=[0, 49], **client_RMSD) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_rms.py:203: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +______________ TestRMSD.test_rmsd_unicode_selection[client_RMSD0] ______________ + +self = +universe = +correct_values = [[0, 1, 0], [49, 50, 4.68953]] +client_RMSD = {'backend': 'multiprocessing', 'n_workers': 2} + + def test_rmsd_unicode_selection(self, universe, correct_values, client_RMSD): + RMSD = MDAnalysis.analysis.rms.RMSD(universe, select=u'name CA') +> RMSD.run(step=49, **client_RMSD) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_rms.py:210: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +____________ TestRMSD.test_rmsd_atomgroup_selections[client_RMSD0] _____________ + +self = +universe = +client_RMSD = {'backend': 'multiprocessing', 'n_workers': 2} + + def test_rmsd_atomgroup_selections(self, universe, client_RMSD): + # see Issue #1684 +> R1 = MDAnalysis.analysis.rms.RMSD(universe.atoms, + select="resid 1-30").run(**client_RMSD) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_rms.py:217: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +________________ TestRMSD.test_rmsd_single_frame[client_RMSD0] _________________ + +self = +universe = +client_RMSD = {'backend': 'multiprocessing', 'n_workers': 2} + + def test_rmsd_single_frame(self, universe, client_RMSD): +> RMSD = MDAnalysis.analysis.rms.RMSD(universe, select='name CA', + ).run(start=5, stop=6, **client_RMSD) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_rms.py:224: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +__________________ TestRMSD.test_mass_weighted[client_RMSD0] ___________________ + +self = +universe = +correct_values = [[0, 1, 0], [49, 50, 4.68953]] +client_RMSD = {'backend': 'multiprocessing', 'n_workers': 2} + + def test_mass_weighted(self, universe, correct_values, client_RMSD): + # mass weighting the CA should give the same answer as weighing + # equally because all CA have the same mass +> RMSD = MDAnalysis.analysis.rms.RMSD(universe, select='name CA', + weights='mass').run(step=49, **client_RMSD) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_rms.py:234: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_________________ TestRMSD.test_custom_weighted[client_RMSD0] __________________ + +self = +universe = +correct_values_mass = [[0, 1, 0], [49, 50, 4.7492]] +client_RMSD = {'backend': 'multiprocessing', 'n_workers': 2} + + def test_custom_weighted(self, universe, correct_values_mass, client_RMSD): +> RMSD = MDAnalysis.analysis.rms.RMSD(universe, weights="mass").run(step=49, **client_RMSD) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_rms.py:242: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +__________ TestRMSD.test_weights_mass_is_mass_weighted[client_RMSD0] ___________ + +self = +universe = +client_RMSD = {'backend': 'multiprocessing', 'n_workers': 2} + + def test_weights_mass_is_mass_weighted(self, universe, client_RMSD): +> RMSD_mass = MDAnalysis.analysis.rms.RMSD(universe, + weights="mass").run(step=49, **client_RMSD) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_rms.py:249: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +_______________ TestRMSD.test_custom_weighted_list[client_RMSD0] _______________ + +self = +universe = +correct_values_mass = [[0, 1, 0], [49, 50, 4.7492]] +client_RMSD = {'backend': 'multiprocessing', 'n_workers': 2} + + def test_custom_weighted_list(self, universe, correct_values_mass, client_RMSD): + weights = universe.atoms.masses +> RMSD = MDAnalysis.analysis.rms.RMSD(universe, + weights=list(weights)).run(step=49, **client_RMSD) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_rms.py:259: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +__ TestRMSD.test_custom_groupselection_weights_applied_1D_array[client_RMSD0] __ + +self = +universe = +client_RMSD = {'backend': 'multiprocessing', 'n_workers': 2} + + def test_custom_groupselection_weights_applied_1D_array(self, universe, client_RMSD): +> RMSD = MDAnalysis.analysis.rms.RMSD(universe, + select='backbone', + groupselections=['name CA and resid 1-5', 'name CA and resid 1'], + weights=None, + weights_groupselections=[[1, 0, 0, 0, 0], None]).run(step=49, + **client_RMSD + ) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_rms.py:266: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +____ TestRMSD.test_custom_groupselection_weights_applied_mass[client_RMSD0] ____ + +self = +universe = +correct_values_mass = [[0, 1, 0], [49, 50, 4.7492]] +client_RMSD = {'backend': 'multiprocessing', 'n_workers': 2} + + def test_custom_groupselection_weights_applied_mass(self, universe, correct_values_mass, client_RMSD): +> RMSD = MDAnalysis.analysis.rms.RMSD(universe, + select='backbone', + groupselections=['all', 'all'], + weights=None, + weights_groupselections=['mass', + universe.atoms.masses]).run(step=49, + **client_RMSD + ) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_rms.py:279: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +______________ TestRMSD.test_rmsd_group_selections[client_RMSD0] _______________ + +self = +universe = +correct_values_group = [[0, 1, 0, 0, 0], [49, 50, 4.7857, 4.7048, 4.6924]] +client_RMSD = {'backend': 'multiprocessing', 'n_workers': 2} + + def test_rmsd_group_selections(self, universe, correct_values_group, client_RMSD): +> RMSD = MDAnalysis.analysis.rms.RMSD(universe, + groupselections=['backbone', 'name CA'] + ).run(step=49, **client_RMSD) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_rms.py:328: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +________ TestRMSD.test_rmsd_backbone_and_group_selection[client_RMSD0] _________ + +self = +universe = +correct_values_backbone_group = [[0, 1, 0, 0, 0], [49, 50, 4.6997, 1.9154, 2.7139]] +client_RMSD = {'backend': 'multiprocessing', 'n_workers': 2} + + def test_rmsd_backbone_and_group_selection(self, universe, + correct_values_backbone_group, + client_RMSD): +> RMSD = MDAnalysis.analysis.rms.RMSD( + universe, + reference=universe, + select="backbone", + groupselections=['backbone and resid 1:10', + 'backbone and resid 10:20']).run(step=49, **client_RMSD) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_rms.py:338: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +____________ TestRMSD.test_ref_mobile_mass_mismapped[client_RMSD0] _____________ + +self = +universe = +correct_values_mass_add_ten = [[0, 1, 0.0632], [49, 50, 4.771]] +client_RMSD = {'backend': 'multiprocessing', 'n_workers': 2} + + def test_ref_mobile_mass_mismapped(self, universe,correct_values_mass_add_ten, client_RMSD): + reference = MDAnalysis.Universe(PSF, DCD) + universe.atoms.masses = universe.atoms.masses + 10 + RMSD = MDAnalysis.analysis.rms.RMSD(universe, + reference=reference, + select='all', + weights='mass', + tol_mass=100) +> RMSD.run(step=49, **client_RMSD) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_rms.py:370: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +________________ TestRMSD.test_rmsd_attr_warning[client_RMSD0] _________________ + +self = +universe = +client_RMSD = {'backend': 'multiprocessing', 'n_workers': 2} + + def test_rmsd_attr_warning(self, universe, client_RMSD): +> RMSD = MDAnalysis.analysis.rms.RMSD( + universe, select='name CA').run(stop=2, **client_RMSD) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/analysis/test_rms.py:384: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/base.py:822: in run + remote_objects: list["AnalysisBase"] = executor.apply( +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/analysis/backends.py:252: in apply + with Pool(processes=self.n_workers) as pool: +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +__________________________ test_multiprocess_COG[u0] ___________________________ + +u = + + def test_multiprocess_COG(u): + ag = u.atoms[2:5] + + ref = np.array([cog(u, ag, i) + for i in range(3)]) + +> p = multiprocessing.Pool(2) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:126: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +__________________________ test_multiprocess_COG[u1] ___________________________ + +u = + + def test_multiprocess_COG(u): + ag = u.atoms[2:5] + + ref = np.array([cog(u, ag, i) + for i in range(3)]) + +> p = multiprocessing.Pool(2) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:126: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +__________________________ test_multiprocess_COG[u2] ___________________________ + +u = + + def test_multiprocess_COG(u): + ag = u.atoms[2:5] + + ref = np.array([cog(u, ag, i) + for i in range(3)]) + +> p = multiprocessing.Pool(2) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:126: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +__________________________ test_multiprocess_COG[u3] ___________________________ + +u = + + def test_multiprocess_COG(u): + ag = u.atoms[2:5] + + ref = np.array([cog(u, ag, i) + for i in range(3)]) + +> p = multiprocessing.Pool(2) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:126: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +__________________________ test_multiprocess_COG[u4] ___________________________ + +u = + + def test_multiprocess_COG(u): + ag = u.atoms[2:5] + + ref = np.array([cog(u, ag, i) + for i in range(3)]) + +> p = multiprocessing.Pool(2) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:126: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +__________________________ test_multiprocess_COG[u5] ___________________________ + +u = + + def test_multiprocess_COG(u): + ag = u.atoms[2:5] + + ref = np.array([cog(u, ag, i) + for i in range(3)]) + +> p = multiprocessing.Pool(2) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:126: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +__________________________ test_multiprocess_COG[u6] ___________________________ + +u = + + def test_multiprocess_COG(u): + ag = u.atoms[2:5] + + ref = np.array([cog(u, ag, i) + for i in range(3)]) + +> p = multiprocessing.Pool(2) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:126: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +__________________________ test_multiprocess_COG[u7] ___________________________ + +u = + + def test_multiprocess_COG(u): + ag = u.atoms[2:5] + + ref = np.array([cog(u, ag, i) + for i in range(3)]) + +> p = multiprocessing.Pool(2) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:126: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +__________________________ test_multiprocess_COG[u8] ___________________________ + +u = + + def test_multiprocess_COG(u): + ag = u.atoms[2:5] + + ref = np.array([cog(u, ag, i) + for i in range(3)]) + +> p = multiprocessing.Pool(2) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:126: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +__________________________ test_multiprocess_COG[u9] ___________________________ + +u = + + def test_multiprocess_COG(u): + ag = u.atoms[2:5] + + ref = np.array([cog(u, ag, i) + for i in range(3)]) + +> p = multiprocessing.Pool(2) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:126: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +__________________________ test_multiprocess_COG[u10] __________________________ + +u = + + def test_multiprocess_COG(u): + ag = u.atoms[2:5] + + ref = np.array([cog(u, ag, i) + for i in range(3)]) + +> p = multiprocessing.Pool(2) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:126: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +__________________________ test_multiprocess_COG[u11] __________________________ + +u = + + def test_multiprocess_COG(u): + ag = u.atoms[2:5] + + ref = np.array([cog(u, ag, i) + for i in range(3)]) + +> p = multiprocessing.Pool(2) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:126: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +__________________________ test_multiprocess_COG[u12] __________________________ + +u = + + def test_multiprocess_COG(u): + ag = u.atoms[2:5] + + ref = np.array([cog(u, ag, i) + for i in range(3)]) + +> p = multiprocessing.Pool(2) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:126: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +__________________________ test_multiprocess_COG[u13] __________________________ + +u = + + def test_multiprocess_COG(u): + ag = u.atoms[2:5] + + ref = np.array([cog(u, ag, i) + for i in range(3)]) + +> p = multiprocessing.Pool(2) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:126: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +__________________________ test_multiprocess_COG[u14] __________________________ + +u = + + def test_multiprocess_COG(u): + ag = u.atoms[2:5] + + ref = np.array([cog(u, ag, i) + for i in range(3)]) + +> p = multiprocessing.Pool(2) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:126: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +____________________ test_universe_unpickle_in_new_process _____________________ + + def test_universe_unpickle_in_new_process(): + u = mda.Universe(GRO, XTC) + ref = [getnames(u, i) + for i in range(3)] + +> p = multiprocessing.Pool(2) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:143: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +________________ test_creating_multiple_universe_without_offset ________________ + +temp_xtc = PosixPath('/tmp/pytest-of-pbuilder2/pytest-0/test_creating_multiple_univers0/testing.xtc') +ncopies = 3 + + def test_creating_multiple_universe_without_offset(temp_xtc, ncopies=3): + # test if they can be created without generating + # the offset simultaneously. + # The tested XTC file is way too short to induce a race scenario but the + # test is included as documentation for the scenario that used to create + # a problem (see PR #3375 and issues #3230, #1988) + + args = (GRO, str(temp_xtc)) +> with multiprocessing.Pool(2) as p: + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:159: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +______________________________ test_streamplot_2D ______________________________ + +membrane_xtc = '/tmp/pytest-of-pbuilder2/pytest-0/streamlines0/dummy.xtc' +univ = + + def test_streamplot_2D(membrane_xtc, univ): + # regression test the data structures + # generated by the 2D streamplot code +> u1, v1, avg, std = streamlines.generate_streamlines(topology_file_path=Martini_membrane_gro, + trajectory_file_path=membrane_xtc, + grid_spacing=20, + MDA_selection='name PO4', + start_frame=1, + end_frame=2, + xmin=univ.atoms.positions[...,0].min(), + xmax=univ.atoms.positions[...,0].max(), + ymin=univ.atoms.positions[...,1].min(), + ymax=univ.atoms.positions[...,1].max(), + maximum_delta_magnitude=2.0, + num_cores=1) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/visualization/test_streamlines.py:57: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/visualization/streamlines.py:330: in generate_streamlines + pool = multiprocessing.Pool(num_cores) +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +------------------------------ Captured log setup ------------------------------ +DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology +DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology +DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology +DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology +DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology +DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology +DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology +DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology +DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology +DEBUG MDAnalysis.core.universe:universe.py:653 Universe.load_new(): loading /build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/martini_dppc_chol_bilayer.gro... +DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology +INFO MDAnalysis.core.universe:universe.py:1682 attribute types has been guessed successfully. +DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology +INFO MDAnalysis.core.universe:universe.py:1682 attribute masses has been guessed successfully. +________________________ test_streamplot_2D_zero_return ________________________ + +membrane_xtc = '/tmp/pytest-of-pbuilder2/pytest-0/streamlines0/dummy.xtc' +univ = +tmpdir = local('/tmp/pytest-of-pbuilder2/pytest-0/test_streamplot_2D_zero_return0') + + def test_streamplot_2D_zero_return(membrane_xtc, univ, tmpdir): + # simple roundtrip test to ensure that + # zeroed arrays are returned by the 2D streamplot + # code when called with an empty selection +> u1, v1, avg, std = streamlines.generate_streamlines(topology_file_path=Martini_membrane_gro, + trajectory_file_path=membrane_xtc, + grid_spacing=20, + MDA_selection='name POX', + start_frame=1, + end_frame=2, + xmin=univ.atoms.positions[...,0].min(), + xmax=univ.atoms.positions[...,0].max(), + ymin=univ.atoms.positions[...,1].min(), + ymax=univ.atoms.positions[...,1].max(), + maximum_delta_magnitude=2.0, + num_cores=1) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/visualization/test_streamlines.py:87: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/visualization/streamlines.py:330: in generate_streamlines + pool = multiprocessing.Pool(num_cores) +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +______________________________ test_streamplot_3D ______________________________ + +membrane_xtc = '/tmp/pytest-of-pbuilder2/pytest-0/streamlines0/dummy.xtc' +univ = +tmpdir = local('/tmp/pytest-of-pbuilder2/pytest-0/test_streamplot_3D0') + + def test_streamplot_3D(membrane_xtc, univ, tmpdir): + # because mayavi is too heavy of a dependency + # for a roundtrip plotting test, simply + # aim to check for sensible values + # returned by generate_streamlines_3d +> dx, dy, dz = streamlines_3D.generate_streamlines_3d(topology_file_path=Martini_membrane_gro, + trajectory_file_path=membrane_xtc, + grid_spacing=20, + MDA_selection='name PO4', + start_frame=1, + end_frame=2, + xmin=univ.atoms.positions[...,0].min(), + xmax=univ.atoms.positions[...,0].max(), + ymin=univ.atoms.positions[...,1].min(), + ymax=univ.atoms.positions[...,1].max(), + zmin=univ.atoms.positions[...,2].min(), + zmax=univ.atoms.positions[...,2].max(), + maximum_delta_magnitude=2.0, + num_cores=1) + +/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/visualization/test_streamlines.py:110: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +/build/reproducible-path/mdanalysis-2.8.0/.pybuild/cpython3_3.13_mdanalysis/build/MDAnalysis/visualization/streamlines_3D.py:468: in generate_streamlines_3d + pool = multiprocessing.Pool(num_cores) +/usr/lib/python3.13/multiprocessing/context.py:119: in Pool + return Pool(processes, initializer, initargs, maxtasksperchild, +/usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ + self._repopulate_pool() +/usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool + return self._repopulate_pool_static(self._ctx, self.Process, +/usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static + w.start() +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = + + def start(self): + ''' + Start child process + ''' + self._check_closed() + assert self._popen is None, 'cannot start a process twice' + assert self._parent_pid == os.getpid(), \ + 'can only start a process object created by current process' +> assert not _current_process._config.get('daemon'), \ + 'daemonic processes are not allowed to have children' +E AssertionError: daemonic processes are not allowed to have children + +/usr/lib/python3.13/multiprocessing/process.py:118: AssertionError +------------------------------ Captured log call ------------------------------- +DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology +DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology +DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology +DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology +DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology +DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology +DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology +DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology +DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology +DEBUG MDAnalysis.core.universe:universe.py:653 Universe.load_new(): loading /tmp/pytest-of-pbuilder2/pytest-0/streamlines0/dummy.xtc... +DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology +INFO MDAnalysis.core.universe:universe.py:1682 attribute types has been guessed successfully. +DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology +INFO MDAnalysis.core.universe:universe.py:1682 attribute masses has been guessed successfully. +=========================== short test summary info ============================ +FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory[client_DSSP0] +FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_atomgroup[client_DSSP0] +FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory_with_hydrogens[client_DSSP0] +FAILED testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_parallel_calculation +FAILED testsuite/MDAnalysisTests/analysis/test_gnm.py::test_gnm[client_GNMAnalysis0] +FAILED testsuite/MDAnalysisTests/analysis/test_gnm.py::test_gnm_run_step[client_GNMAnalysis0] +FAILED testsuite/MDAnalysisTests/analysis/test_gnm.py::test_closeContactGNMAnalysis[client_GNMAnalysis0] +FAILED testsuite/MDAnalysisTests/analysis/test_gnm.py::test_closeContactGNMAnalysis_weights_None[client_GNMAnalysis0] +FAILED testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_logging_step_not_1[client_HydrogenBondAnalysis0] +FAILED testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_logging_step_not_1[client_HydrogenBondAnalysis0] +FAILED testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_all[client_HydrogenBondAnalysis0] +FAILED testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_PW[client_HydrogenBondAnalysis0] +FAILED testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_PW_PP[client_HydrogenBondAnalysis0] +FAILED testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_no_hydrogens[client_HydrogenBondAnalysis0] +FAILED testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisEmptySelections::test_hbond_analysis[client_HydrogenBondAnalysis0] +FAILED testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd[client_RMSD0] +FAILED testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_frames[client_RMSD0] +FAILED testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_unicode_selection[client_RMSD0] +FAILED testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_atomgroup_selections[client_RMSD0] +FAILED testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_single_frame[client_RMSD0] +FAILED testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_mass_weighted[client_RMSD0] +FAILED testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_weighted[client_RMSD0] +FAILED testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_weights_mass_is_mass_weighted[client_RMSD0] +FAILED testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_weighted_list[client_RMSD0] +FAILED testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_groupselection_weights_applied_1D_array[client_RMSD0] +FAILED testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_groupselection_weights_applied_mass[client_RMSD0] +FAILED testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_group_selections[client_RMSD0] +FAILED testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_backbone_and_group_selection[client_RMSD0] +FAILED testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_ref_mobile_mass_mismapped[client_RMSD0] +FAILED testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_attr_warning[client_RMSD0] +FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u0] +FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u1] +FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u2] +FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u3] +FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u4] +FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u5] +FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u6] +FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u7] +FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u8] +FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u9] +FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u10] +FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u11] +FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u12] +FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u13] +FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u14] +FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_universe_unpickle_in_new_process +FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_creating_multiple_universe_without_offset +FAILED testsuite/MDAnalysisTests/visualization/test_streamlines.py::test_streamplot_2D +FAILED testsuite/MDAnalysisTests/visualization/test_streamlines.py::test_streamplot_2D_zero_return +FAILED testsuite/MDAnalysisTests/visualization/test_streamlines.py::test_streamplot_3D +ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_hbond_analysis[client_HydrogenBondAnalysis0] +ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_time[client_HydrogenBondAnalysis0] +ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_type[client_HydrogenBondAnalysis0] +ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_ids[client_HydrogenBondAnalysis0] +ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_hbonds_deprecated_attr[client_HydrogenBondAnalysis0] +ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_count_by_type[client_HydrogenBondAnalysis0] +ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_first_hbond[client_HydrogenBondAnalysis0] +ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_count_by_time[client_HydrogenBondAnalysis0] +ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_hydrogen_bond_lifetime[client_HydrogenBondAnalysis0] +ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_hydrogen_bond_lifetime_intermittency[client_HydrogenBondAnalysis0] +ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_count_by_type[client_HydrogenBondAnalysis0] +ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_first_hbond[client_HydrogenBondAnalysis0] +ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_count_by_time[client_HydrogenBondAnalysis0] +ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_hydrogen_bond_lifetime[client_HydrogenBondAnalysis0] +ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_hydrogen_bond_lifetime_intermittency[client_HydrogenBondAnalysis0] +ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_hbond_analysis[client_HydrogenBondAnalysis0] +ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_time[client_HydrogenBondAnalysis0] +ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_type[client_HydrogenBondAnalysis0] +ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_ids[client_HydrogenBondAnalysis0] +ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_hbonds_deprecated_attr[client_HydrogenBondAnalysis0] +ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3PStartStep::test_hbond_analysis[client_HydrogenBondAnalysis0] +ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3PStartStep::test_count_by_time[client_HydrogenBondAnalysis0] +ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3PStartStep::test_count_by_type[client_HydrogenBondAnalysis0] += 50 failed, 19031 passed, 558 skipped, 2 deselected, 7 xfailed, 2 xpassed, 170107 warnings, 23 errors in 3281.60s (0:54:41) = +PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_atomgroup[client_DSSP0] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory_with_hydrogens[client_DSSP0] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory_without_hydrogen_fails[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2xdgA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory_with_uneven_number_of_atoms_fails[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1mr1D_failing.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_exception_raises_with_atom_index[client_DSSP0-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/wrong_hydrogens.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2fvvA.pdb.gz] PASSED [ 1%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3q4oA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2xr6A.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2j49A.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3nzmA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3ny7A.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2xcjA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1mr1D.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1bvyF.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3on9A.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3so6A.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1dx5I.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2cayA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2qdlA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3l4rA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3gknA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1h4aX.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3gwiA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2i39A.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3a4rA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3ieyB.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2cviA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/4gcnA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1or4A.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3hklA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3fhkA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3gfsA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3nbkA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2gu3A.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1eteA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1pdoA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3nngA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3aqgA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1i8nA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3k7pA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1y1lA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1ahsA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3ejfA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3lqcA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2va0A.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3pivA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3vjzA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2a2lA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1v7mV.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1lpbA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/4dkcA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3ii2A.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3e8mA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2xdgA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/3t5gB.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory[client_DSSP1] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_atomgroup[client_DSSP1] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory_with_hydrogens[client_DSSP1] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory_without_hydrogen_fails[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/2xdgA.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory_with_uneven_number_of_atoms_fails[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/1mr1D_failing.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_dssp.py::test_exception_raises_with_atom_index[client_DSSP1-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/dssp/wrong_hydrogens.pdb.gz] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::test_moved_to_mdakit_warning PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_triangular_matrix PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_parallel_calculation PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_rmsd_matrix_with_superimposition PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_rmsd_matrix_with_superimposition_custom_weights PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_rmsd_matrix_without_superimposition PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_ensemble_superimposition PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_ensemble_superimposition_to_reference_non_weighted PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_covariance_matrix PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_covariance_matrix_with_reference PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_hes_to_self PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_hes PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_hes_custom_weights PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_hes_align PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_ces_to_self PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_ces PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_dres_to_self PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_dres PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_dres_without_superimposition XPASS [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_ces_convergence PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_dres_convergence PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_hes_error_estimation XPASS [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_ces_error_estimation PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_ces_error_estimation_ensemble_bootstrap PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_dres_error_estimation PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_one_ensemble PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_two_ensembles PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_three_ensembles_two_identical PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_two_methods PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_AffinityPropagationNative_direct PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_AffinityPropagation_direct PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_KMeans_direct PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_DBSCAN_direct PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_two_different_methods PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_method_w_no_distance_matrix PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_two_methods_one_w_no_distance_matrix PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_sklearn_affinity_propagation PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_ClusterCollection_init PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_Cluster_init PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_ClusterCollection_get_ids PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_ClusterCollection_get_centroids PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_cluster_add_metadata PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_empty_cluster PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_centroid_not_in_elements PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_metadata_size_error PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_cluster_iteration PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_cluster_len PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_cluster_repr PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClusteringSklearn::test_one PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreDimensionalityReduction::test_dimensionality_reduction_one_ensemble PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreDimensionalityReduction::test_dimensionality_reduction_two_ensembles PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreDimensionalityReduction::test_dimensionality_reduction_three_ensembles_two_identical PASSED [ 2%] 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+testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreImportWarnings::test_import_warnings PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_gnm.py::test_gnm[client_GNMAnalysis0] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_gnm.py::test_gnm_run_step[client_GNMAnalysis0] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_gnm.py::test_closeContactGNMAnalysis[client_GNMAnalysis0] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_gnm.py::test_closeContactGNMAnalysis_weights_None[client_GNMAnalysis0] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_gnm.py::test_gnm[client_GNMAnalysis1] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_gnm.py::test_gnm_run_step[client_GNMAnalysis1] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_gnm.py::test_closeContactGNMAnalysis[client_GNMAnalysis1] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_gnm.py::test_closeContactGNMAnalysis_weights_None[client_GNMAnalysis1] PASSED [ 2%] 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+testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis2-screw_angles2] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis3-screw_angles3] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis4-screw_angles4] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis5-screw_angles5] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis6-screw_angles6] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis7-screw_angles7] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis8-screw_angles8] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis9-screw_angles9] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis10-screw_angles10] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis11-screw_angles11] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis12-screw_angles12] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis13-screw_angles13] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis14-screw_angles14] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_square_oct PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_regression_summary PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_regression_values PASSED [ 2%] 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+testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis8-screw_angles8] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis9-screw_angles9] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis10-screw_angles10] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis11-screw_angles11] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis12-screw_angles12] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis13-screw_angles13] PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis14-screw_angles14] PASSED [ 2%] 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+testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_solve_intermittent PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_wronglength_DA PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_exclusions PASSED [ 2%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_bond_type_VE PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_solve_before_run_VE PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_unslicable_traj_VE PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_repr PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_deprecation_warning PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::test_find_donors PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::test_donors_nobonds PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::test_find_hydrogen_donors_deprecation_warning PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::test_moved_module_warning PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_hbond_analysis[client_HydrogenBondAnalysis0] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_time[client_HydrogenBondAnalysis0] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_type[client_HydrogenBondAnalysis0] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_ids[client_HydrogenBondAnalysis0] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_hbonds_deprecated_attr[client_HydrogenBondAnalysis0] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_count_by_type[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_first_hbond[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_count_by_time[client_HydrogenBondAnalysis0] ERROR [ 3%] 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+testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_hydrogen_bond_lifetime[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_hydrogen_bond_lifetime_intermittency[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_logging_step_not_1[client_HydrogenBondAnalysis0] FAILED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_all[client_HydrogenBondAnalysis0] FAILED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_PW[client_HydrogenBondAnalysis0] FAILED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_PW_PP[client_HydrogenBondAnalysis0] FAILED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_hbond_analysis[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_time[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_type[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_ids[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_hbonds_deprecated_attr[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_no_hydrogens[client_HydrogenBondAnalysis0] FAILED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3PStartStep::test_hbond_analysis[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3PStartStep::test_count_by_time[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3PStartStep::test_count_by_type[client_HydrogenBondAnalysis0] ERROR [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisEmptySelections::test_hbond_analysis[client_HydrogenBondAnalysis0] FAILED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_hbond_analysis[client_HydrogenBondAnalysis1] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_time[client_HydrogenBondAnalysis1] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_type[client_HydrogenBondAnalysis1] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_ids[client_HydrogenBondAnalysis1] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_hbonds_deprecated_attr[client_HydrogenBondAnalysis1] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_count_by_type[client_HydrogenBondAnalysis1] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_first_hbond[client_HydrogenBondAnalysis1] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_count_by_time[client_HydrogenBondAnalysis1] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_hydrogen_bond_lifetime[client_HydrogenBondAnalysis1] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_hydrogen_bond_lifetime_intermittency[client_HydrogenBondAnalysis1] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_logging_step_not_1[client_HydrogenBondAnalysis1] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_count_by_type[client_HydrogenBondAnalysis1] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_first_hbond[client_HydrogenBondAnalysis1] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_count_by_time[client_HydrogenBondAnalysis1] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_hydrogen_bond_lifetime[client_HydrogenBondAnalysis1] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_hydrogen_bond_lifetime_intermittency[client_HydrogenBondAnalysis1] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_logging_step_not_1[client_HydrogenBondAnalysis1] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_all[client_HydrogenBondAnalysis1] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_PW[client_HydrogenBondAnalysis1] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_PW_PP[client_HydrogenBondAnalysis1] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_hbond_analysis[client_HydrogenBondAnalysis1] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_time[client_HydrogenBondAnalysis1] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_type[client_HydrogenBondAnalysis1] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_ids[client_HydrogenBondAnalysis1] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_hbonds_deprecated_attr[client_HydrogenBondAnalysis1] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_no_hydrogens[client_HydrogenBondAnalysis1] PASSED [ 3%] +testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3PStartStep::test_hbond_analysis[client_HydrogenBondAnalysis1] PASSED [ 3%] 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PASSED [ 5%] +testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__getstate__] PASSED [ 5%] +testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__gt__] PASSED [ 5%] +testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__hash__] PASSED [ 5%] +testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__init__] PASSED [ 5%] +testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__init_subclass__] PASSED [ 5%] +testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__ior__] PASSED [ 5%] +testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__iter__] PASSED [ 5%] +testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__le__] PASSED [ 5%] 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[ 5%] +testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_water_donor[hydrogen] PASSED [ 5%] +testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_water_donor[heavy] PASSED [ 5%] +testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_donor_water_donor[hydrogen] PASSED [ 5%] +testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_donor_water_donor[heavy] PASSED [ 5%] +testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_empty PASSED [ 5%] +testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_same_selection PASSED [ 5%] +testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_2water_accepter[hydrogen] PASSED [ 5%] +testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_2water_accepter[heavy] PASSED [ 5%] 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SKIPPED [ 6%] +testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_other_attributes[42] SKIPPED [ 6%] +testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_index_property[resname ALA] SKIPPED [ 6%] +testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_index_property[resname PRO and segid A] SKIPPED [ 7%] +testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_assign_coordinates SKIPPED [ 7%] +testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_assign_stereochemistry SKIPPED [ 7%] +testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_trajectory_coords SKIPPED [ 7%] +testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_nan_coords SKIPPED [ 7%] +testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_cache SKIPPED [ 7%] 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PASSED [ 7%] +testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info7-trr] PASSED [ 7%] +testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_start_frames PASSED [ 7%] +testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_missing PASSED [ 7%] +testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_warning PASSED [ 7%] +testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_interleaving_error PASSED [ 7%] +testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_easy_trigger_warning PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_single_frames PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_mixed_filetypes PASSED [ 8%] 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[ 8%] +testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l13-ref13] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l14-ref14] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_issue_4008 PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_issue_3349 PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader0] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader1] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader2] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader3] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader4] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader5] PASSED [ 8%] 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+testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args5] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args6] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args7] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args8] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args9] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args10] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args11] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args12] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args13] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args14] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args15] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args16] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args17] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args18] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args19] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args20] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args21] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args22] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args23] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args24] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args25] PASSED [ 8%] 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+testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader7] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader8] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader9] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader10] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader11] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader12] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader13] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader14] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader15] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader16] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader17] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader18] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader19] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader20] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader21] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader22] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader23] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader24] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader25] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader26] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader0] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader1] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader2] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader3] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader4] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader5] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader6] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader7] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader8] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader9] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader10] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader11] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader12] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader13] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader14] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader15] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader16] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader17] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader18] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader19] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader20] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader21] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader22] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader23] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader24] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader25] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader26] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader0] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader1] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader2] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader3] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader4] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader5] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader6] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader7] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader8] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader9] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader10] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader11] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader12] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader13] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader14] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader15] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader16] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader17] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader18] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader19] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader20] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader21] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader22] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader23] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader24] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader25] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader26] SKIPPED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader0] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader1] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader2] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader3] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader4] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader5] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader6] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader7] PASSED [ 8%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader8] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader9] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader10] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader11] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader12] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader13] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader14] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader15] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader16] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader17] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader18] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader19] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader20] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader21] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader22] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader23] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader24] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader25] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader26] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader0] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader1] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader2] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader3] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader4] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader5] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader6] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader7] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader8] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader9] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader10] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader11] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader12] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader13] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader14] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader15] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader16] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader17] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader18] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader19] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader20] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader21] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader22] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader23] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader24] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader25] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader26] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_copy_with_auxiliary_no_pyedr PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_copying.py::test_copy_with_auxiliary_pyedr SKIPPED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriter::test_write_atoms[test.crd] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriter::test_write_atoms[test.crd.bz2] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriter::test_write_atoms[test.crd.gz] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriter::test_roundtrip PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriter::test_write_EXT PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriter::test_write_EXT_read PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_warns[resnames] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_warns[resids] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_warns[names] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_warns[tempfactors] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_write[resnames] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_write[resids] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_write[names] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_write[tempfactors] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_n_atoms PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_n_frames PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_first_frame PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_double_close PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_get_writer_1 PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_get_writer_2 PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_dt PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_ts_dt_matches_reader PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_total_time PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_first_dimensions PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_changing_dimensions PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_volume PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_iter PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_add_same_auxname_raises_ValueError PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_remove_auxiliary PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_iter_auxiliary PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_get_aux_attribute PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_iter_as_aux_cutoff PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_reload_auxiliaries_from_description PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_stop_iter PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_transformations_iter PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_transformations_2iter PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_transformations_slice PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_transformations_switch_frame PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_transformation_rewind PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_transformations_copy PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_add_another_transformations_raises_ValueError PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_pickle_reader PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_frame_collect_all_same XFAIL [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_shape[fac] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_shape[fca] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_shape[afc] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_shape[acf] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_shape[caf] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_shape[cfa] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_values[slice0] PASSED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_values[slice1] SKIPPED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_values[slice2] SKIPPED [ 9%] +testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_asel_shape[index 1] PASSED [ 9%] 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PASSED [ 11%] +testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_add_same_auxname_raises_ValueError PASSED [ 11%] +testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_remove_auxiliary PASSED [ 11%] +testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 11%] +testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_iter_auxiliary PASSED [ 11%] +testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_get_aux_attribute PASSED [ 11%] +testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_iter_as_aux_cutoff PASSED [ 11%] +testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_reload_auxiliaries_from_description PASSED [ 11%] +testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_stop_iter PASSED [ 11%] 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SKIPPED [ 11%] +testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_values[slice2] SKIPPED [ 11%] +testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_asel_shape[index 1] PASSED [ 11%] +testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_asel_shape[index 2] PASSED [ 11%] +testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_asel_shape[index 1 to 3] PASSED [ 11%] +testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_empty_asel PASSED [ 11%] +testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_empty_atomgroup PASSED [ 11%] +testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_asel_warns_deprecation PASSED [ 11%] +testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_atomgroup PASSED [ 11%] 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+testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_shape[cfa] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_values[slice0] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_values[slice1] SKIPPED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_values[slice2] SKIPPED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_asel_shape[index 1] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_asel_shape[index 2] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_asel_shape[index 1 to 3] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_empty_asel PASSED [ 12%] 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PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_pickle_last_ts_reader PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_get_writer_1 PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_get_writer_2 PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_copying PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterBaseAPI::test_write_different_box PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterBaseAPI::test_write_selection PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterBaseAPI::test_write_none PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterBaseAPI::test_no_container PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterBaseAPI::test_write_not_changing_ts PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterBaseAPI::test_write_trajectory_atomgroup PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterBaseAPI::test_write_trajectory_universe PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_n_frames PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_positions PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_h5md_velocities PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_h5md_forces PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_h5md_dimensions PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_h5md_data_step PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_rewind PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_next PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_jump_last_frame PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_slice[0-2-1] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_slice[1-2-1] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_array_like[list] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_array_like[array] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_list_indices PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_no_group[position-positions] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_no_group[velocity-velocities] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_no_group[force-forces] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_unknown_unit[position/value] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_unknown_unit[position/time] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_unknown_unit[velocity/value] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_unknown_unit[force/value] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_length_unit_from_box PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_changing_n_atoms[position] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_changing_n_atoms[velocity] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_changing_n_atoms[force] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_2D_box PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_box_vector PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_no_box PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_no_groups PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_no_convert_units PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_no_units_but_convert_units_true_error PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_open_filestream XFAIL [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_wrong_driver PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_open_with_driver PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_parse_n_atoms[velocity-force] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_parse_n_atoms[position-force] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_parse_n_atoms[position-velocity] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_parse_n_atoms_error PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_n_atoms_errors[0-ValueError-H5MDWriter: no atoms in output trajectory] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_n_atoms_errors[0.5-OSError-H5MDWriter: Timestep does not have] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_chunk_error PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_no_dimensions[None] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_no_dimensions[0] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_step_not_monotonic PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_step_from_frame PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_has_property PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_trajectory[True-False-False] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_trajectory[True-True-False] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_trajectory[True-False-True] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_trajectory[True-True-True] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_trajectory[False-True-True] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_trajectory[False-False-True] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_trajectory[False-False-False] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_AtomGroup_with PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_ag_write[None-1] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_ag_write[all-3] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_custom_units[fs-Angstrom-Angstrom/ps-kJ/(mol*Angstrom)] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_custom_units[s-pm-m/s-Newton] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_custom_units[ps-fm-Angstrom/fs-kcal/(mol*Angstrom)] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_custom_units[AKMA-nm-Angstrom/AKMA-kcal/(mol*Angstrom)] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_bad_units[imaginary time-None-None-None] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_bad_units[None-None-c-None] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_bad_units[None-None-None-HUGE FORCE] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_bad_units[None-lightyear-None-None] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_no_units_w_convert_true PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_no_units_w_convert_false PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_convert_units[True] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_convert_units[False] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_chunks[chunks0] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_chunks[chunks1] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_chunks[chunks2] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_chunks_with_nframes PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_contiguous1 PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_contiguous2 PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_with_compression[gzip-1] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_with_compression[gzip-9] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_with_compression[lzf-None] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_with_drivers[core] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_with_drivers[stdio] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_parallel_disabled PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_timestep_not_modified_by_writer PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5PYNotInstalled::test_reader_no_h5py PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5PYNotInstalled::test_writer_no_h5py PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithObservables::test_read_h5md_issue4598 PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithObservables::test_read_h5md_malformed PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_datareader_ValueError PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_n_atoms PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_coords PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_velos PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_dimensions PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_singleframe PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_seek PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_seek_2 PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_iter PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_n_atoms PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_coords PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_velos PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_dimensions PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_singleframe PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_seek PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_seek_2 PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_iter PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_unwrap_vel_force PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_unwrap_image_wrap PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_unwrap_no_image PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_dimensions[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/datatest.data] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms_types[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/datatest.data] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/datatest.data-bonds] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/datatest.data-angles] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/datatest.data-dihedrals] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/datatest.data-impropers] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/datatest.data-masses] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/datatest.data-charges] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/datatest.data-velocities] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/datatest.data-positions] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_dimensions[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/datatest.data] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms_types[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/datatest.data] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/datatest.data-masses] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/datatest.data-charges] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/datatest.data-velocities] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/datatest.data-positions] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_dimensions[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/mini.data] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms_types[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/mini.data] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/mini.data-bonds] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/mini.data-angles] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/mini.data-dihedrals] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/mini.data-impropers] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/mini.data-masses] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/mini.data-charges] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/mini.data-velocities] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/mini.data-positions] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_dimensions[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/mini.data] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms_types[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/mini.data] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/mini.data-masses] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/mini.data-charges] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/mini.data-velocities] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/mini.data-positions] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_dimensions[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms_types[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-bonds] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-angles] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-dihedrals] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-impropers] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-masses] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-charges] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-velocities] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-positions] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_dimensions[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 12%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms_types[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-masses] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-charges] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-velocities] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-positions] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_dimensions[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms_types[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-bonds] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-angles] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-dihedrals] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-impropers] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-masses] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-charges] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-velocities] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-positions] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_dimensions[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms_types[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-masses] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-charges] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-velocities] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-positions] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_molecule_tag::test_molecule_tag[LAMMPSDATAWriter_molecule_tag0] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_molecule_tag::test_molecule_tag[LAMMPSDATAWriter_molecule_tag1] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_molecule_tag::test_molecule_tag[LAMMPSDATAWriter_molecule_tag2] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_molecule_tag::test_molecule_tag[LAMMPSDATAWriter_molecule_tag3] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_molecule_tag::test_molecule_tag[LAMMPSDATAWriter_molecule_tag4] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_datawriter_universe[out.data] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_datawriter_universe[out.data.bz2] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_datawriter_universe[out.data.gz] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms[masses] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms[charges] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms[velocities] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms[positions] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_n_bonds PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_n_angles PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_Reader_is_LAMMPS PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_n_atoms PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_n_frames PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_dimensions PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_dt PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_Timestep_time PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_LAMMPSDCDReader_set_dt PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_wrong_time_unit PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_wrong_unit PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriter::test_Writer_is_LAMMPS PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriter::test_Writer PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriter::test_OtherWriter_is_LAMMPS PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriter::test_OtherWriter PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriterClass::test_Writer_is_LAMMPS PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriterClass::test_open PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriterClass::test_wrong_time_unit PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriterClass::test_wrong_unit PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_triclinicness PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestDataWriterErrors::test_write_no_masses PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestDataWriterErrors::test_write_no_types PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestDataWriterErrors::test_write_non_numerical_types PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_n_atoms[ascii] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_n_atoms[bz2] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_n_atoms[gzip] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_length[ascii] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_length[bz2] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_length[gzip] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_seeking[ascii] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_seeking[bz2] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_seeking[gzip] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_boxsize[ascii] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_boxsize[bz2] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_boxsize[gzip] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_atom_reordering[ascii] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_atom_reordering[bz2] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_atom_reordering[gzip] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_additional_columns[u_additional_columns_true-fields0] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_additional_columns[u_additional_columns_single-fields1] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_additional_columns[u_additional_columns_multiple-fields2] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_wrong_format_additional_colums[u_additional_columns_wrong_format] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_warning[u_additional_columns_not_present] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_absent_convention_fails[unscaled] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_absent_convention_fails[unwrapped] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_absent_convention_fails[scaled_unwrapped] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_incorrect_convention_fails PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_all_convention[auto-unscaled] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_all_convention[unscaled-unscaled] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_all_convention[scaled-scaled] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_all_convention[unwrapped-unwrapped] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_all_convention[scaled_unwrapped-scaled_unwrapped] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_no_coordinate_info PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestCoordinateMatches::test_unscaled_reference PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestCoordinateMatches::test_scaled_reference PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestCoordinateMatches::test_unwrapped_scaled_reference PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestCoordinateMatches::test_scaled_unscaled_match PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestCoordinateMatches::test_unwrapped_scaled_unwrapped_match PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestCoordinateMatches::test_auto_is_unscaled_match PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsTriclinic::test_box PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_n_atoms PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_n_frames PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_first_frame PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_double_close PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_dt PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_ts_dt_matches_reader PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_total_time PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_first_dimensions PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_changing_dimensions PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_volume PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_iter PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_add_same_auxname_raises_ValueError PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_remove_auxiliary PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_iter_auxiliary PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_get_aux_attribute PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_iter_as_aux_cutoff PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_reload_auxiliaries_from_description PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_stop_iter PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_transformations_iter PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_transformations_2iter PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_transformations_slice PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_transformations_switch_frame PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_transformation_rewind PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_transformations_copy PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_add_another_transformations_raises_ValueError PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_pickle_reader PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_frame_collect_all_same XFAIL [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_shape[fac] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_shape[fca] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_shape[afc] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_shape[acf] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_shape[caf] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_shape[cfa] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_values[slice0] XFAIL [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_values[slice1] XFAIL [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_values[slice2] XFAIL [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_asel_shape[index 1] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_asel_shape[index 2] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_asel_shape[index 1 to 3] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_empty_asel PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_empty_atomgroup PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_last_frame PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_go_over_last_frame PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_frame_jump PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_frame_jump_issue1942 PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_next_gives_second_frame PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_reopen PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_rename_aux PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_iter_as_aux_highf PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_iter_as_aux_lowf PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_iter_rewinds[indexed] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_iter_rewinds[sliced] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_iter_rewinds[all] PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_pickle_next_ts_reader PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_pickle_last_ts_reader PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_filename_transefer_to_memory PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_filename_array PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_default_memory_layout PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_iteration PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_extract_array_afc PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_extract_array_fac PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_extract_array_cfa PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_extract_array_acf PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_extract_array_fca PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_extract_array_caf PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_skip1 PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_skip10 PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_view PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_subarray_view PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_view_from_universe_atoms PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_view_from_select_all PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_noview PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_repr PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_get_writer_1 PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_get_writer_2 PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_float32 PASSED [ 13%] +testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_position_assignation PASSED [ 13%] 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15%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_n_frames PASSED [ 15%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_time PASSED [ 15%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_frame PASSED [ 15%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_dt PASSED [ 15%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_coordinates PASSED [ 15%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_distances PASSED [ 15%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_unitcell PASSED [ 15%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_volume PASSED [ 15%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_n_residues PASSED [ 15%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_first_residue PASSED [ 15%] 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15%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_dimensions PASSED [ 15%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_distances PASSED [ 15%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_dt PASSED [ 15%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_frame PASSED [ 15%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_frame_index_0 PASSED [ 15%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_frame_index_1_raises_IndexError PASSED [ 15%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_full_slice PASSED [ 15%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_last_slice PASSED [ 15%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_load_file PASSED [ 15%] 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16%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_len[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/cryst_then_model.pdb.gz] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_len[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/model_then_cryst.pdb] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_len[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/model_then_cryst.pdb.bz2] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_len[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/model_then_cryst.pdb.gz] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_order[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/cryst_then_model.pdb] PASSED [ 16%] 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+testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_rewind[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/model_then_cryst.pdb.bz2] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_rewind[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/model_then_cryst.pdb.gz] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_standalone_pdb PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_write_pdb_zero_atoms PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_atom_not_match PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_partially_missing_cryst PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_write_no_atoms_elements PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_write_atom_elements PASSED [ 16%] 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16%] +testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQT::test_neighborhood PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQT::test_n_frames PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQT::test_time PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQT::test_frame PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQTWriter::test_roundtrip_writing_coords[test.pdbqt] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQTWriter::test_roundtrip_writing_coords[test.pdbqt.bz2] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQTWriter::test_roundtrip_writing_coords[test.pdbqt.gz] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQTWriter::test_roundtrip_formatting PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQTWriter::test_write_no_charges PASSED [ 16%] 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16%] +testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriterMissingAttrs::test_no_resnames_writing PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriterMissingAttrs::test_no_radii_writing PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriterMissingAttrs::test_no_charges_writing PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_required_attributes PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_iter PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_close PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_rewind PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_context PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_len PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_raises_StopIteration PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_timeseries_raises_unknown_order_key[turnip] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_timeseries_raises_unknown_order_key[abc] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_timeseries_raises_incorrect_order_key[faac] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_timeseries_raises_incorrect_order_key[affc] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_timeseries_raises_incorrect_order_key[afcc] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_timeseries_raises_incorrect_order_key[] PASSED [ 16%] 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[ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl22-sl13] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl22-sl14] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl23-sl10] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl23-sl11] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl23-sl12] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl23-sl13] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl23-sl14] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl24-sl10] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl24-sl11] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl24-sl12] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl24-sl13] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl24-sl14] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl25-sl10] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl25-sl11] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl25-sl12] PASSED [ 16%] 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[ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl27-sl11] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl27-sl12] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl27-sl13] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl27-sl14] PASSED [ 16%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl28-sl10] PASSED [ 17%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl28-sl11] PASSED [ 17%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl28-sl12] PASSED [ 17%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl28-sl13] PASSED [ 17%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl28-sl14] PASSED [ 17%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[0-sl10] PASSED [ 17%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[0-sl11] PASSED [ 17%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[0-sl12] PASSED [ 17%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[0-sl13] PASSED [ 17%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[0-sl14] PASSED [ 17%] +testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[0-sl15] PASSED [ 17%] 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PASSED [ 17%] +testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_supply_dt PASSED [ 17%] +testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_redefine_dt PASSED [ 17%] +testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_delete_dt PASSED [ 17%] +testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_supply_time_offset PASSED [ 17%] +testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_time PASSED [ 17%] +testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_delete_time PASSED [ 17%] +testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_time_with_offset PASSED [ 17%] +testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_dt PASSED [ 17%] +testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_change_dt PASSED [ 17%] 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[ 21%] +testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_frame_collect_all_same PASSED [ 21%] +testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_shape[fac] PASSED [ 21%] +testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_shape[fca] PASSED [ 21%] +testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_shape[afc] PASSED [ 21%] +testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_shape[acf] PASSED [ 21%] +testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_shape[caf] PASSED [ 21%] +testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_shape[cfa] PASSED [ 21%] +testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_values[slice0] PASSED [ 21%] +testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_values[slice1] SKIPPED [ 21%] +testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_values[slice2] SKIPPED [ 21%] +testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_asel_shape[index 1] PASSED [ 21%] +testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_asel_shape[index 2] PASSED [ 21%] +testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_asel_shape[index 1 to 3] PASSED [ 21%] +testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_empty_asel PASSED [ 21%] +testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_empty_atomgroup PASSED [ 21%] +testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_asel_warns_deprecation PASSED [ 21%] +testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_atomgroup PASSED [ 21%] 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22%] +testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[residues-resindices-residues] PASSED [ 22%] +testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[residues-segindices-segments] PASSED [ 22%] +testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[residues-molnums-molecules] PASSED [ 22%] +testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[residues-fragindices-fragments] PASSED [ 22%] +testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[segments-resindices-residues] PASSED [ 22%] +testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[segments-segindices-segments] PASSED [ 22%] 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PASSED [ 22%] +testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_atoms[.gz] PASSED [ 22%] +testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_atoms[.bz2] PASSED [ 22%] +testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_empty_atomgroup PASSED [ 22%] +testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_selection[name CA] PASSED [ 22%] +testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_selection[segid 4AKE and resname LEU] PASSED [ 22%] +testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_selection[segid 4AKE] PASSED [ 22%] +testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_Residue PASSED [ 22%] +testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_Universe PASSED [ 22%] +testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWriteGRO::test_write_atoms[] PASSED [ 22%] 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1-reference0] PASSED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsTPR::test_molnum[molnum 2:4-reference1] PASSED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_aromatic_selection[aromatic-5] SKIPPED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_aromatic_selection[not aromatic-1] SKIPPED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_aromatic_selection[type N and aromatic-1] SKIPPED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_aromatic_selection[type C and aromatic-4] SKIPPED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts n-indices0] SKIPPED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts [#7]-indices1] SKIPPED [ 25%] 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SKIPPED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[(smarts a) and (type C)-indices9] SKIPPED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts a and type N-indices10] SKIPPED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_invalid_smarts_sel_raises_error SKIPPED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_passing_rdkit_kwargs_to_converter SKIPPED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_passing_max_matches_to_converter SKIPPED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_passing_use_chirality_to_converter SKIPPED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsNucleicAcids::test_nucleic PASSED [ 25%] 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PASSED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_sphzone[True-33] PASSED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_sphzone[False-25] PASSED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_around[True] PASSED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_around[False] PASSED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_spherical_layer[True] PASSED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_spherical_layer[False] PASSED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_isolayer[True] PASSED [ 25%] 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+testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag0-mass-prop mass<1.5] PASSED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag0-charge-prop charge < 1.5] PASSED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag0-charge-prop charge <1.5] PASSED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag0-charge-prop charge< 1.5] PASSED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag0-charge-prop charge<1.5] PASSED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-mass-prop mass < 1.5] PASSED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-mass-prop mass <1.5] PASSED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-mass-prop mass< 1.5] PASSED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-mass-prop mass<1.5] PASSED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-charge-prop charge < 1.5] PASSED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-charge-prop charge <1.5] PASSED [ 25%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-charge-prop charge< 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-charge-prop charge<1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-mass-prop mass <= 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-mass-prop mass <=1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-mass-prop mass<= 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-mass-prop mass<=1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-charge-prop charge <= 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-charge-prop charge <=1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-charge-prop charge<= 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-charge-prop charge<=1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-mass-prop mass <= 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-mass-prop mass <=1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-mass-prop mass<= 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-mass-prop mass<=1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-charge-prop charge <= 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-charge-prop charge <=1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-charge-prop charge<= 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-charge-prop charge<=1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-mass-prop mass > 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-mass-prop mass >1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-mass-prop mass> 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-mass-prop mass>1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-charge-prop charge > 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-charge-prop charge >1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-charge-prop charge> 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-charge-prop charge>1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-mass-prop mass > 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-mass-prop mass >1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-mass-prop mass> 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-mass-prop mass>1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-charge-prop charge > 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-charge-prop charge >1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-charge-prop charge> 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-charge-prop charge>1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-mass-prop mass >= 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-mass-prop mass >=1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-mass-prop mass>= 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-mass-prop mass>=1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-charge-prop charge >= 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-charge-prop charge >=1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-charge-prop charge>= 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-charge-prop charge>=1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-mass-prop mass >= 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-mass-prop mass >=1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-mass-prop mass>= 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-mass-prop mass>=1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-charge-prop charge >= 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-charge-prop charge >=1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-charge-prop charge>= 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-charge-prop charge>=1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-mass-prop mass == 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-mass-prop mass ==1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-mass-prop mass== 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-mass-prop mass==1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-charge-prop charge == 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-charge-prop charge ==1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-charge-prop charge== 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-charge-prop charge==1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-mass-prop mass == 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-mass-prop mass ==1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-mass-prop mass== 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-mass-prop mass==1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-charge-prop charge == 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-charge-prop charge ==1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-charge-prop charge== 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-charge-prop charge==1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-mass-prop mass != 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-mass-prop mass !=1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-mass-prop mass!= 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-mass-prop mass!=1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-charge-prop charge != 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-charge-prop charge !=1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-charge-prop charge!= 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-charge-prop charge!=1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-mass-prop mass != 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-mass-prop mass !=1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-mass-prop mass!= 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-mass-prop mass!=1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-charge-prop charge != 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-charge-prop charge !=1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-charge-prop charge!= 1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-charge-prop charge!=1.5] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-mass-<] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-mass->] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-mass-<=] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-mass->=] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-mass-==] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-mass-!=] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-charge-<] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-charge->] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-charge-<=] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-charge->=] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-charge-==] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-charge-!=] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-mass-<] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-mass->] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-mass-<=] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-mass->=] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-mass-==] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-mass-!=] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-charge-<] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-charge->] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-charge-<=] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-charge->=] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-charge-==] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-charge-!=] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestBondedSelection::test_bonded_1 PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestBondedSelection::test_nobonds_warns PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[name and H] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[name )] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[resid abcd] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[resnum 7a7] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[resid 1-] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[prop chicken == tasty] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[prop chicken <= 7.4] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[prop mass ^^ 12.0] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[same this as resid 1] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[same resid resname mass 5.0] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[name H and] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[naem H] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[resid and name C] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[resnum ] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[bynum or protein] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[index or protein] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[prop mass < 4.0 hello] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[prop mass > 10. and group this] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[mass 1.0 to] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[mass to 3.0] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[mass 1.0:] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[mass :3.0] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[mass 1-] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[chirality ] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[formalcharge 0.2] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_invalid_prop_selection PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_segid_and_resid PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_string_selections[name NameABA or name NameACA or name NameADA-name NameABA NameACA NameADA] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_string_selections[type TypeE or type TypeD or type TypeB-type TypeE TypeD TypeB] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_string_selections[resname RsC or resname RsY-resname RsC RsY] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_string_selections[name NameAB* or name NameACC-name NameAB* NameACC] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_string_selections[segid SegA or segid SegC-segid SegA SegC] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_string_selections[(name NameABC or name NameABB) and (resname RsD or resname RsF)-name NameABC NameABB and resname RsD RsF] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 2-{typ} 1 2-resid] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 2-{typ} 1 2-resnum] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 2-{typ} 1 2-bynum] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 2-{typ} 1 2-index] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 22-{typ} 1:10 22-resid] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 22-{typ} 1:10 22-resnum] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 22-{typ} 1:10 22-bynum] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 22-{typ} 1:10 22-index] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 20:30-{typ} 1:10 20:30-resid] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 20:30-{typ} 1:10 20:30-resnum] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 20:30-{typ} 1:10 20:30-bynum] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 20:30-{typ} 1:10 20:30-index] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7-{typ} 1-5 7-resid] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7-{typ} 1-5 7-resnum] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7-{typ} 1-5 7-bynum] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7-{typ} 1-5 7-index] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7:10 or {typ} 12-{typ} 1-5 7:10 12-resid] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7:10 or {typ} 12-{typ} 1-5 7:10 12-resnum] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7:10 or {typ} 12-{typ} 1-5 7:10 12-bynum] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7:10 or {typ} 12-{typ} 1-5 7:10 12-index] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 3 or {typ} 5:10-{typ} 1 3 5:10-resid] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 3 or {typ} 5:10-{typ} 1 3 5:10-resnum] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 3 or {typ} 5:10-{typ} 1 3 5:10-bynum] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 3 or {typ} 5:10-{typ} 1 3 5:10-index] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_select_icode PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_select_resid_implicit_icode PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_select_icode_range_1 PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_select_icode_range_2 PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_select_icode_range_3 PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_select_icode_range_4 PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_select_icode_range_5 PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_missing_icodes_VE PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_missing_icodes_range_VE PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_similarity_selection_icodes[same residue as -11] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_similarity_selection_icodes[same resid as-72] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_similarity_selection_icodes[byres-11] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[all] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[protein] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[backbone] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[nucleic] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[nucleicbackbone] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[name O] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[name N*] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[resname stuff] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[resname ALA] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[type O] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[index 0] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[index 1] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[bynum 1-10] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[segid SYSTEM] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[resid 163] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[resid 1-10] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[resnum 2] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[around 10 resid 1] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[point 0 0 0 10] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[sphzone 10 resid 1] PASSED [ 26%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[sphlayer 0 10 index 1] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[cyzone 15 4 -8 index 0] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[cylayer 5 10 10 -8 index 1] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[prop abs z <= 100] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[byres index 0] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[same resid as index 0] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_empty_yet_global PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_arbitrary_atom_group_raises_error PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_empty_sel PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_record_type_sel PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_element_sel PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_chain_sel PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.8 to 1.2-23844-selkwargs0] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 8e-1 to 1200e-3-23844-selkwargs1] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -5--3-2-selkwargs2] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -3 : -5-0-selkwargs3] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -5 --3-2-selkwargs4] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -5- -3-2-selkwargs5] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -5 - -3-2-selkwargs6] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -10:3-34945-selkwargs7] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -10 :3-34945-selkwargs8] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -10: 3-34945-selkwargs9] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -10 : 3-34945-selkwargs10] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -10 -3-0-selkwargs11] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.3-5-selkwargs12] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.3-5-selkwargs13] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.3 - 0.30000000000000004-10-selkwargs14] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.30000000000000004-5-selkwargs15] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.3 0.30000000000000001-5-selkwargs16] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.3-10-selkwargs17] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.30000000000000004-10-selkwargs18] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.3 0.30000000000000001-10-selkwargs19] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[prop mass == 0.3-10-selkwargs20] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[prop mass == 0.30000000000000004-10-selkwargs21] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[prop mass == 0.30000000000000004-5-selkwargs22] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel_warning PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_int_sel[resnum -10 to 3-13] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_int_sel[resnum -5--3-3] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_int_sel[resnum -3 : -5-0] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_negative_resid PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_bool_sel[aromaticity-5] SKIPPED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_bool_sel[aromaticity true-5] SKIPPED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_bool_sel[not aromaticity-15] SKIPPED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_bool_sel[aromaticity False-15] SKIPPED [ 27%] 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[ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_unique_selection_on_ordered_group[name N-True-ix0] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_unique_selection_on_ordered_group[name N-False-ix1] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_unique_selection_on_ordered_group[resname GLU-True-ix2] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_unique_selection_on_ordered_group[resname GLU-False-ix3] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_chirality[C[C@@H](C(=O)O)N-S] SKIPPED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_chirality[C[C@H](C(=O)O)N-R] SKIPPED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_chirality_selection[R-1] SKIPPED [ 27%] +testsuite/MDAnalysisTests/core/test_atomselections.py::test_chirality_selection[S-1] SKIPPED [ 27%] 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+testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_velocities_access[True-True-True] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_access[True-False-False] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_access[True-True-False] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_access[True-False-True] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_access[True-True-True] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_access[True-False-False] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_access[True-True-False] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_access[True-False-True] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_access[True-True-True] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_access[True-False-False] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_access[True-True-False] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_access[True-False-True] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_access[True-True-True] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_access[True-False-False] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_access[True-True-False] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_access[True-False-True] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_access[True-True-True] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_positions_setting[True-False-False] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_positions_setting[True-True-False] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_positions_setting[True-False-True] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_positions_setting[True-True-True] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_velocities_setting[True-False-False] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_velocities_setting[True-True-False] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_velocities_setting[True-False-True] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_velocities_setting[True-True-True] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_setting[True-False-False] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_setting[True-True-False] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_setting[True-False-True] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_setting[True-True-True] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_setting[True-False-False] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_setting[True-True-False] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_setting[True-False-True] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_setting[True-True-True] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_setting[True-False-False] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_setting[True-True-False] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_setting[True-False-True] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_setting[True-True-True] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_setting[True-False-False] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_setting[True-True-False] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_setting[True-False-True] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_setting[True-True-True] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtom_ForceVelocity::test_atom_force_get PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtom_ForceVelocity::test_atom_velocity_get PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtom_ForceVelocity::test_atom_force_set PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtom_ForceVelocity::test_atom_velocity_set PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtom_ForceVelocity::test_pos_iteration PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtom_ForceVelocity::test_vel_iteration PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtom_ForceVelocity::test_for_iteration PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestGROVelocities::testParse_velocities PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestTRRForces::testForces PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestTRRForcesNativeUnits::testForces PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupVelocities::test_get_velocities PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupVelocities::test_velocities PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupVelocities::test_set_velocities PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupForces::test_get_forces PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupForces::test_forces PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupForces::test_set_forces PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_dimensions PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_isunique[group0] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_isunique[group1] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_isunique[group2] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_nocache[group0] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_nocache[group1] PASSED [ 27%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_nocache[group2] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_create_unique_group_from_unique[group0] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_create_unique_group_from_unique[group1] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_create_unique_group_from_unique[group2] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_returns_sorted_copy[ix0-unique_ix0-ugroup0] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_returns_sorted_copy[ix0-unique_ix0-ugroup1] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_returns_sorted_copy[ix0-unique_ix0-ugroup2] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_returns_sorted_copy[ix1-unique_ix1-ugroup0] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_returns_sorted_copy[ix1-unique_ix1-ugroup1] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_returns_sorted_copy[ix1-unique_ix1-ugroup2] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix0-False-ugroup0] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix0-False-ugroup1] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix0-False-ugroup2] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix1-True-ugroup0] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix1-True-ugroup1] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix1-True-ugroup2] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix2-True-ugroup0] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix2-True-ugroup1] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix2-True-ugroup2] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix0-True-unique_ix0-True-ugroup0] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix0-True-unique_ix0-True-ugroup1] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix0-True-unique_ix0-True-ugroup2] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix1-False-unique_ix1-True-ugroup0] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix1-False-unique_ix1-True-ugroup1] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix1-False-unique_ix1-True-ugroup2] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix2-True-unique_ix2-False-ugroup0] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix2-True-unique_ix2-False-ugroup1] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix2-True-unique_ix2-False-ugroup2] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix3-False-unique_ix3-True-ugroup0] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix3-False-unique_ix3-True-ugroup1] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix3-False-unique_ix3-True-ugroup2] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix4-True-unique_ix4-False-ugroup0] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix4-True-unique_ix4-False-ugroup1] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix4-True-unique_ix4-False-ugroup2] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix5-False-unique_ix5-False-ugroup0] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix5-False-unique_ix5-False-ugroup1] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix5-False-unique_ix5-False-ugroup2] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix6-True-unique_ix6-False-ugroup0] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix6-True-unique_ix6-False-ugroup1] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix6-True-unique_ix6-False-ugroup2] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix7-False-unique_ix7-False-ugroup0] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix7-False-unique_ix7-False-ugroup1] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix7-False-unique_ix7-False-ugroup2] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_return_sorted_unsorted_unique[ugroup0] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_return_sorted_unsorted_unique[ugroup1] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_return_sorted_unsorted_unique[ugroup2] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_return_unsorted_sorted_unique[ugroup0] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_return_unsorted_sorted_unique[ugroup1] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_return_unsorted_sorted_unique[ugroup2] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestEmptyAtomGroup::test_passive_decorator[ag0] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestEmptyAtomGroup::test_error_empty_group[ag0] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_atoms[atom] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_atoms[residue] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_atoms[segment] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_residues[atom] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_residues[residue] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_residues[segment] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_segments[atom] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_segments[residue] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_segments[segment] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_len[atom] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_len[residue] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_len[segment] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_boolean_slicing[atom-list] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_boolean_slicing[atom-array] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_boolean_slicing[residue-list] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_boolean_slicing[residue-array] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_boolean_slicing[segment-list] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_boolean_slicing[segment-array] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_indexerror[atom] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_indexerror[residue] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_indexerror[segment] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl0-list] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl1-] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl2-list] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl3-] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl4-list] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl5-] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl6-list] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl7-] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl8-list] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl9-] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl10-list] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl11-] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl12-list] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl13-] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl0-list] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl1-] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl2-list] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl3-] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl4-list] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl5-] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl6-list] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl7-] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl8-list] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl9-] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl10-list] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl11-] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl12-list] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl13-] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl0-list] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl1-] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl2-list] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl3-] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl4-list] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl5-] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl6-list] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl7-] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl8-list] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl9-] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl10-list] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl11-] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl12-list] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl13-] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[atom-0] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[atom-1] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[atom--1] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[atom--2] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[residue-0] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[residue-1] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[residue--1] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[residue--2] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[segment-0] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[segment-1] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[segment--1] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[segment--2] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_none_getitem[atom] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_none_getitem[residue] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_none_getitem[segment] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a0-b0-AtomGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a1-b1-AtomGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a2-b2-AtomGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a3-b3-AtomGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a4-b4-ResidueGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a5-b5-ResidueGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a6-b6-ResidueGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a7-b7-ResidueGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a8-b8-SegmentGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a9-b9-SegmentGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a10-b10-SegmentGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a11-b11-SegmentGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a0-b0-c0-AtomGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a1-b1-c1-AtomGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a2-b2-c2-AtomGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a3-b3-c3-AtomGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a4-b4-c4-AtomGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a5-b5-c5-AtomGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a6-b6-c6-AtomGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a7-b7-c7-AtomGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a8-b8-c8-ResidueGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a9-b9-c9-ResidueGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a10-b10-c10-ResidueGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a11-b11-c11-ResidueGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a12-b12-c12-ResidueGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a13-b13-c13-ResidueGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a14-b14-c14-ResidueGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a15-b15-c15-ResidueGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a16-b16-c16-SegmentGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a17-b17-c17-SegmentGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a18-b18-c18-SegmentGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a19-b19-c19-SegmentGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a20-b20-c20-SegmentGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a21-b21-c21-SegmentGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a22-b22-c22-SegmentGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a23-b23-c23-SegmentGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a0-b0-c0-AtomGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a1-b1-c1-AtomGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a2-b2-c2-AtomGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a3-b3-c3-AtomGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a4-b4-c4-AtomGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a5-b5-c5-AtomGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a6-b6-c6-AtomGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a7-b7-c7-AtomGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a8-b8-c8-ResidueGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a9-b9-c9-ResidueGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a10-b10-c10-ResidueGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a11-b11-c11-ResidueGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a12-b12-c12-ResidueGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a13-b13-c13-ResidueGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a14-b14-c14-ResidueGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a15-b15-c15-ResidueGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a16-b16-c16-SegmentGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a17-b17-c17-SegmentGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a18-b18-c18-SegmentGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a19-b19-c19-SegmentGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a20-b20-c20-SegmentGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a21-b21-c21-SegmentGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a22-b22-c22-SegmentGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a23-b23-c23-SegmentGroup] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains[atom] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains[residue] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains[segment] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_false[atom] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_false[residue] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_false[segment] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_wronglevel[atom-residue] PASSED [ 28%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_wronglevel[atom-segment] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_wronglevel[residue-atom] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_wronglevel[residue-segment] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_wronglevel[segment-atom] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_wronglevel[segment-residue] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a0-b0] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a1-b1] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a2-b2] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a3-b3] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a4-b4] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a5-b5] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a6-b6] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a7-b7] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a8-b8] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a9-b9] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a10-b10] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a11-b11] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a12-b12] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a13-b13] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a14-b14] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a15-b15] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a16-b16] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a17-b17] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a18-b18] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a19-b19] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a20-b20] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a21-b21] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a22-b22] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a23-b23] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_atomgroup_to_atomgroup PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_atomgroup_to_residuegroup PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_atomgroup_to_segmentgroup PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_residuegroup_to_atomgroup PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_residuegroup_to_residuegroup PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_residuegroup_to_segmentgroup PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_segmentgroup_to_atomgroup PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_segmentgroup_to_residuegroup PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_segmentgroup_to_segmentgroup PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_atom_to_residue PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_atom_to_segment PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_residue_to_atomgroup PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_residue_to_segment PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_segment_to_atomgroup PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_segment_to_residuegroup PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_atomgroup_to_residuegroup_unique PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_atomgroup_to_segmentgroup_unique PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_residuegroup_to_segmentgroup_unique PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_residuegroup_to_atomgroup_listcomp PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_segmentgroup_to_residuegroup_listcomp PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_segmentgroup_to_atomgroup_listcomp PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_lt[abc0] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_lt[abc1] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_lt[abc2] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_gt[abc0] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_gt[abc1] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_gt[abc2] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_ge[abc0] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_ge[abc1] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_ge[abc2] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_le[abc0] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_le[abc1] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_le[abc2] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_neq[abc0] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_neq[abc1] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_neq[abc2] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_eq[abc0] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_eq[abc1] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_eq[abc2] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_sorting[abc0] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_sorting[abc1] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_sorting[abc2] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_cmp[x0-y0] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_cmp[x1-y1] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_cmp[x2-y2] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_cmp[x3-y3] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_cmp[x4-y4] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_cmp[x5-y5] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_eq[x0-y0] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_eq[x1-y1] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_eq[x2-y2] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_eq[x3-y3] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_eq[x4-y4] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_eq[x5-y5] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestMetaclassMagic::test_new_class PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_float PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_string[segids0] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_string[segids1] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_string[segids2] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_int PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_float_string PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_int_float PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_string_int PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_atom_repr PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_residue_repr PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_segment_repr PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_atomgroup_repr PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_atomgroup_str_short PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_atomgroup_str_long PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_residuegroup_repr PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_residuegroup_str_short PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_residuegroup_str_long PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_segmentgroup_repr PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_segmentgroup_str PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_len[atoms] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_len[residues] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_len[segments] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_len_duplicated_and_scrambled[atoms] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_len_duplicated_and_scrambled[residues] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_len_duplicated_and_scrambled[segments] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_equal[simple-atoms] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_equal[simple-residues] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_equal[simple-segments] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_equal[scrambled-atoms] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_equal[scrambled-residues] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_equal[scrambled-segments] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_copy[group0] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_copy[group1] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_copy[group2] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issubset[simple-atoms] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issubset[simple-residues] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issubset[simple-segments] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issubset[scrambled-atoms] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issubset[scrambled-residues] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issubset[scrambled-segments] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_subset[simple-atoms] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_subset[simple-residues] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_subset[simple-segments] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_subset[scrambled-atoms] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_subset[scrambled-residues] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_subset[scrambled-segments] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issuperset[simple-atoms] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issuperset[simple-residues] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issuperset[simple-segments] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issuperset[scrambled-atoms] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issuperset[scrambled-residues] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issuperset[scrambled-segments] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_superset[simple-atoms] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_superset[simple-residues] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_superset[simple-segments] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_superset[scrambled-atoms] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_superset[scrambled-residues] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_superset[scrambled-segments] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_concatenate[simple-atoms] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_concatenate[simple-residues] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_concatenate[simple-segments] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_concatenate[scrambled-atoms] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_concatenate[scrambled-residues] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_concatenate[scrambled-segments] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_union[simple-atoms] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_union[simple-residues] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_union[simple-segments] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_union[scrambled-atoms] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_union[scrambled-residues] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_union[scrambled-segments] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_intersection[simple-atoms] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_intersection[simple-residues] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_intersection[simple-segments] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_intersection[scrambled-atoms] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_intersection[scrambled-residues] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_intersection[scrambled-segments] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_subtract[simple-atoms] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_subtract[simple-residues] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_subtract[simple-segments] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_subtract[scrambled-atoms] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_subtract[scrambled-residues] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_subtract[scrambled-segments] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_difference[simple-atoms] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_difference[simple-residues] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_difference[simple-segments] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_difference[scrambled-atoms] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_difference[scrambled-residues] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_difference[scrambled-segments] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_symmetric_difference[simple-atoms] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_symmetric_difference[simple-residues] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_symmetric_difference[simple-segments] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_symmetric_difference[scrambled-atoms] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_symmetric_difference[scrambled-residues] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_symmetric_difference[scrambled-segments] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_isdisjoint[simple-atoms] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_isdisjoint[simple-residues] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_isdisjoint[simple-segments] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_isdisjoint[scrambled-atoms] PASSED [ 29%] +testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_isdisjoint[scrambled-residues] PASSED [ 29%] 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+testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_plural_topattr_from_component[altLocs-altLoc] PASSED [ 30%] +testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_sing_topattr_from_group[masses-mass] PASSED [ 30%] +testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_sing_topattr_from_group[altLocs-altLoc] PASSED [ 30%] +testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_absent_topattr_group[elements-element] PASSED [ 30%] +testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_absent_topattr_group[tempfactors-tempfactor] PASSED [ 30%] +testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_absent_topattr_group[bonds-bonds] PASSED [ 30%] +testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_non_topattr PASSED [ 30%] +testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_unwrap_without_bonds PASSED [ 30%] +testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_absent_attr_method PASSED [ 30%] +testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_absent_attrprop PASSED [ 30%] +testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_attrprop_wrong_group PASSED [ 30%] +testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_attrmethod_wrong_group PASSED [ 30%] +testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_wrong_name[altlocs] PASSED [ 30%] +testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_wrong_name[alt_Locs] PASSED [ 30%] +testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_object_init[atoms] PASSED [ 30%] +testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_object_init[residues] PASSED [ 30%] +testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_object_init[segments] PASSED [ 30%] 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PASSED [ 31%] +testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_get_segments PASSED [ 31%] +testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_get_segment PASSED [ 31%] +testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_missing_masses PASSED [ 31%] +testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_len PASSED [ 31%] +testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_set_atom_VE PASSED [ 31%] +testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_get_atoms PASSED [ 31%] +testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_set_atoms_singular PASSED [ 31%] +testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_set_atoms_plural PASSED [ 31%] +testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_set_atoms_VE PASSED [ 31%] +testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_get_residues PASSED [ 31%] +testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_get_segments PASSED [ 31%] +testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_get_segment PASSED [ 31%] +testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_len PASSED [ 31%] +testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_set_residue_VE PASSED [ 31%] +testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_get_atoms PASSED [ 31%] +testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_get_atom PASSED [ 31%] +testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_get_residues PASSED [ 31%] +testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_set_residues_singular PASSED [ 31%] +testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_set_residues_plural PASSED [ 31%] 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32%] +testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestICodes::test_get_segments PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_len PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_set_residue_VE PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_get_atoms PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_get_atom PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_get_residues PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_set_residues_singular PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_set_residues_plural PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_set_residues_VE PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_get_segments PASSED [ 32%] 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[ 32%] +testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_cmap_repr PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_cmap_repr_VE PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_td_len PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_td_iter PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_td_keyerror PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_td_universe PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bonds_types PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bonds_contains PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bond_uniqueness PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bond_reversal PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bond_no_reversal PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_angles_types PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_angles_contains PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_angles_uniqueness PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_angles_reversal PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_dihedrals_types PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_dihedrals_contains PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_dihedrals_uniqueness PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_dihedrals_reversal PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bad_creation PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bad_creation_TG PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_tg_creation_bad_btype PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bond_tg_creation_notype PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_angle_tg_creation_notype PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_dihedral_tg_creation_notype PASSED [ 32%] +testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_create_guessed_tg PASSED [ 32%] 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+testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[element-elements-] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[elements-elements-] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[radius-radii-0.0] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[radii-radii-0.0] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[chainID-chainIDs-] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[chainIDs-chainIDs-] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[tempfactor-tempfactors-0.0] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[tempfactors-tempfactors-0.0] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[mass-masses-0.0] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[masses-masses-0.0] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[charge-charges-0.0_1] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[charges-charges-0.0_1] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[bfactor-bfactors-0.0] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[bfactors-bfactors-0.0] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[occupancy-occupancies-0.0] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[occupancies-occupancies-0.0] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[altLoc-altLocs-] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[altLocs-altLocs-] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[resid-resids-1] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[resids-resids-1] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[resname-resnames-] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[resnames-resnames-] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[resnum-resnums-1] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[resnums-resnums-1] PASSED [ 33%] 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33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection_error[dihedrals-values6] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection_error[impropers-values7] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_attr_length_error PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_del_TA_fail PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_absent_fail PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_wrongtype_fail PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_del_str[charge-charges] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_del_str[charges-charges] PASSED [ 33%] 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+testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_indices_to_empty[dihedrals-values2] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_indices_to_empty[impropers-values3] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_reversed_duplicates PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_indices_to_populated[bonds-values0] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_indices_to_populated[angles-values1] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_indices_to_populated[dihedrals-values2] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_indices_to_populated[impropers-values3] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_empty[bonds-values0] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_empty[angles-values1] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_empty[dihedrals-values2] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_empty[impropers-values3] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_populated[bonds-values0] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_populated[angles-values1] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_populated[dihedrals-values2] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_populated[impropers-values3] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_wrong_universe_error[bonds-values0] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_wrong_universe_error[angles-values1] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_wrong_universe_error[dihedrals-values2] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_wrong_universe_error[impropers-values3] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_to_populated[bonds-values0] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_to_populated[angles-values1] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_to_populated[dihedrals-values2] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_to_populated[impropers-values3] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_wrong_universe_error[bonds-values0] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_wrong_universe_error[angles-values1] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_wrong_universe_error[dihedrals-values2] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_wrong_universe_error[impropers-values3] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroups_to_populated[bonds-values0] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroups_to_populated[angles-values1] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroups_to_populated[dihedrals-values2] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroups_to_populated[impropers-values3] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_wrong_universe_error[bonds-values0] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_wrong_universe_error[angles-values1] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_wrong_universe_error[dihedrals-values2] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_wrong_universe_error[impropers-values3] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_different_universe[bonds-values0] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_different_universe[angles-values1] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_different_universe[dihedrals-values2] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_different_universe[impropers-values3] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_topologygroup_error[impropers-values0] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_topologygroup_error[dihedrals-values1] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_topologygroup_error[angles-values2] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_topologygroup_error[bonds-values3] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_nonexistent_indices_error[bonds-values0] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_nonexistent_indices_error[angles-values1] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_nonexistent_indices_error[dihedrals-values2] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_nonexistent_indices_error[impropers-values3] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_number_of_atoms_error[bonds-2] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_number_of_atoms_error[angles-3] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_number_of_atoms_error[dihedrals-4] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_number_of_atoms_error[impropers-4] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_bonds_refresh_fragments PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_roundtrip[bonds-values0] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_roundtrip[angles-values1] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_roundtrip[dihedrals-values2] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_roundtrip[impropers-values3] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_indices[bonds-values0] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_indices[angles-values1] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_indices[dihedrals-values2] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_indices[impropers-values3] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_indices[bonds-values0] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_indices[angles-values1] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_indices[dihedrals-values2] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_indices[impropers-values3] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_atomgroup[bonds-values0] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_atomgroup[angles-values1] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_atomgroup[dihedrals-values2] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_atomgroup[impropers-values3] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_atomgroup_wrong_universe_error[bonds-values0] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_atomgroup_wrong_universe_error[angles-values1] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_atomgroup_wrong_universe_error[dihedrals-values2] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_atomgroup_wrong_universe_error[impropers-values3] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_atomgroup[bonds-values0] PASSED [ 33%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_atomgroup[angles-values1] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_atomgroup[dihedrals-values2] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_atomgroup[impropers-values3] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_mixed_type[bonds-values0] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_mixed_type[angles-values1] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_mixed_type[dihedrals-values2] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_mixed_type[impropers-values3] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologyobjects[bonds-values0] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologyobjects[angles-values1] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologyobjects[dihedrals-values2] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologyobjects[impropers-values3] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologyobjects_wrong_universe[bonds-values0] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologyobjects_wrong_universe[angles-values1] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologyobjects_wrong_universe[dihedrals-values2] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologyobjects_wrong_universe[impropers-values3] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologygroup[bonds-values0] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologygroup[angles-values1] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologygroup[dihedrals-values2] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologygroup[impropers-values3] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_wrong_universe_error[bonds-values0] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_wrong_universe_error[angles-values1] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_wrong_universe_error[dihedrals-values2] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_wrong_universe_error[impropers-values3] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_different_universe[bonds-values0] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_different_universe[angles-values1] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_different_universe[dihedrals-values2] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_different_universe[impropers-values3] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_wrong_number_of_atoms_error[bonds-2] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_wrong_number_of_atoms_error[angles-3] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_wrong_number_of_atoms_error[dihedrals-4] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_wrong_number_of_atoms_error[impropers-4] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_attr[bonds-values0] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_attr[angles-values1] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_attr[dihedrals-values2] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_attr[impropers-values3] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_bonds_refresh_fragments PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_all_bonds[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/1hvr.pdb-72] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_all_bonds[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/conect_parsing.pdb-8] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_roundtrip[bonds-values0] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_roundtrip[angles-values1] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_roundtrip[dihedrals-values2] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_roundtrip[impropers-values3] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAllCoordinatesKwarg::test_all_coordinates_length PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAllCoordinatesKwarg::test_all_coordinates_frame PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestAllCoordinatesKwarg::test_second_frame PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_empty PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_empty_extra PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_no_resindex_warning PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_no_segindex_warning PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_no_trivial_warning PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_trajectory PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_trajectory_multiple_frames PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_trajectory_iteration PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_velocities PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_forces PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_empty_no_atoms PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_empty_creation_raises_error PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::test_deprecate_b_tempfactors PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_universe.py::TestOnlyTopology::test_only_top PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-fragments-atoms] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-fragments-residues] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-fragments-segments] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-molecules-atoms] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-molecules-residues] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-molecules-segments] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-residues-atoms] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-residues-residues] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-residues-segments] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-group-atoms] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-group-residues] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-group-segments] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-segments-atoms] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-segments-residues] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-segments-segments] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-fragments-atoms] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-fragments-residues] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-fragments-segments] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-molecules-atoms] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-molecules-residues] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-molecules-segments] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-residues-atoms] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-residues-residues] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-residues-segments] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-group-atoms] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-group-residues] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-group-segments] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-segments-atoms] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-segments-residues] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-segments-segments] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-fragments-atoms] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-fragments-residues] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-fragments-segments] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-molecules-atoms] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-molecules-residues] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-molecules-segments] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-residues-atoms] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-residues-residues] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-residues-segments] PASSED [ 34%] 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[ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-residues-atoms] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-residues-residues] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-residues-segments] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-group-atoms] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-group-residues] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-group-segments] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-segments-atoms] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-segments-residues] PASSED [ 34%] 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PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-fragments-atoms] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-fragments-residues] PASSED [ 34%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-fragments-segments] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-molecules-atoms] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-molecules-residues] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-molecules-segments] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-residues-atoms] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-residues-residues] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-residues-segments] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-group-atoms] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-group-residues] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-group-segments] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-segments-atoms] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-segments-residues] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-segments-segments] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-fragments-atoms] PASSED [ 35%] 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[ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-segments-residues] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-segments-segments] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-fragments-atoms] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-fragments-residues] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-fragments-segments] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-molecules-atoms] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-molecules-residues] PASSED [ 35%] 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[ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-residues-atoms] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-residues-residues] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-residues-segments] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-group-atoms] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-group-residues] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-group-segments] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-segments-atoms] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-segments-residues] PASSED [ 35%] 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PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-fragments-atoms] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-fragments-residues] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-fragments-segments] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-molecules-atoms] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-molecules-residues] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-molecules-segments] PASSED [ 35%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-residues-atoms] PASSED [ 35%] 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+testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[com-segments] PASSED [ 36%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[cog-atoms] PASSED [ 36%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[cog-residues] PASSED [ 36%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[cog-segments] PASSED [ 36%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[None-atoms] PASSED [ 36%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[None-residues] PASSED [ 36%] +testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[None-segments] PASSED [ 36%] +testsuite/MDAnalysisTests/core/test_unwrap.py::test_uncontiguous PASSED [ 36%] +testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_update PASSED [ 36%] +testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_compounded_update PASSED [ 36%] +testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_chained_update PASSED [ 36%] +testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_chained_update2 PASSED [ 36%] +testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_slice_is_static PASSED [ 36%] +testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_kwarg_check PASSED [ 36%] +testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_atoms PASSED [ 36%] +testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_copy PASSED [ 36%] +testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelectionNotraj::test_update PASSED [ 36%] +testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUAGCallCount::test_updated_when_creating PASSED [ 36%] +testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUAGCallCount::test_updated_when_next PASSED [ 36%] +testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestDynamicUAG::test_nested_uags PASSED [ 36%] +testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestDynamicUAG::test_driveby PASSED [ 36%] +testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::test_representations PASSED [ 36%] +testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::test_empty_UAG PASSED [ 36%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-atoms-atoms] PASSED [ 36%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-atoms-residues] PASSED [ 36%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-atoms-segments] PASSED [ 36%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-group-atoms] PASSED [ 36%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-group-residues] PASSED [ 36%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-group-segments] PASSED [ 36%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-segments-atoms] PASSED [ 36%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-segments-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-segments-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-residues-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-residues-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-residues-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-molecules-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-molecules-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-molecules-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-fragments-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-fragments-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-fragments-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-atoms-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-atoms-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-atoms-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-group-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-group-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-group-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-segments-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-segments-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-segments-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-residues-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-residues-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-residues-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-molecules-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-molecules-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-molecules-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-fragments-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-fragments-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-fragments-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-atoms-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-atoms-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-atoms-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-group-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-group-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-group-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-segments-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-segments-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-segments-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-residues-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-residues-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-residues-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-molecules-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-molecules-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-molecules-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-fragments-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-fragments-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-fragments-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-atoms-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-atoms-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-atoms-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-group-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-group-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-group-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-segments-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-segments-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-segments-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-residues-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-residues-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-residues-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-molecules-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-molecules-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-molecules-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-fragments-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-fragments-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-fragments-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-atoms-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-atoms-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-atoms-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-group-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-group-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-group-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-segments-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-segments-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-segments-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-residues-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-residues-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-residues-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-molecules-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-molecules-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-molecules-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-fragments-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-fragments-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-fragments-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-atoms-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-atoms-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-atoms-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-group-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-group-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-group-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-segments-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-segments-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-segments-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-residues-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-residues-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-residues-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-molecules-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-molecules-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-molecules-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-fragments-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-fragments-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-fragments-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-atoms-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-atoms-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-atoms-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-group-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-group-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-group-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-segments-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-segments-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-segments-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-residues-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-residues-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-residues-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-molecules-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-molecules-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-molecules-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-fragments-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-fragments-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-fragments-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-atoms-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-atoms-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-atoms-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-group-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-group-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-group-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-segments-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-segments-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-segments-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-residues-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-residues-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-residues-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-molecules-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-molecules-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-molecules-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-fragments-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-fragments-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-fragments-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-atoms-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-atoms-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-atoms-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-group-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-group-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-group-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-segments-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-segments-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-segments-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-residues-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-residues-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-residues-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-molecules-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-molecules-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-molecules-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-fragments-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-fragments-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-fragments-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-atoms-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-atoms-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-atoms-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-group-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-group-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-group-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-segments-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-segments-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-segments-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-residues-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-residues-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-residues-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-molecules-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-molecules-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-molecules-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-fragments-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-fragments-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-fragments-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-atoms-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-atoms-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-atoms-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-group-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-group-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-group-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-segments-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-segments-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-segments-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-residues-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-residues-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-residues-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-molecules-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-molecules-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-molecules-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-fragments-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-fragments-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-fragments-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-atoms-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-atoms-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-atoms-segments] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-group-atoms] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-group-residues] PASSED [ 37%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-group-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-segments-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-segments-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-segments-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-residues-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-residues-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-residues-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-molecules-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-molecules-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-molecules-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-fragments-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-fragments-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-fragments-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-atoms-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-atoms-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-atoms-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-group-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-group-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-group-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-segments-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-segments-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-segments-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-residues-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-residues-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-residues-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-molecules-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-molecules-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-molecules-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-fragments-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-fragments-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-fragments-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-atoms-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-atoms-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-atoms-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-group-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-group-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-group-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-segments-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-segments-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-segments-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-residues-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-residues-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-residues-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-molecules-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-molecules-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-molecules-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-fragments-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-fragments-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-fragments-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-atoms-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-atoms-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-atoms-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-group-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-group-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-group-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-segments-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-segments-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-segments-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-residues-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-residues-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-residues-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-molecules-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-molecules-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-molecules-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-fragments-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-fragments-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-fragments-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-atoms-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-atoms-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-atoms-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-group-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-group-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-group-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-segments-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-segments-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-segments-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-residues-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-residues-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-residues-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-molecules-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-molecules-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-molecules-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-fragments-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-fragments-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-fragments-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-atoms-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-atoms-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-atoms-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-group-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-group-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-group-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-segments-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-segments-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-segments-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-residues-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-residues-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-residues-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-molecules-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-molecules-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-molecules-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-fragments-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-fragments-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-fragments-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-atoms-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-atoms-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-atoms-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-group-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-group-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-group-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-segments-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-segments-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-segments-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-residues-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-residues-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-residues-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-molecules-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-molecules-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-molecules-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-fragments-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-fragments-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-fragments-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-atoms-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-atoms-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-atoms-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-group-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-group-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-group-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-segments-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-segments-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-segments-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-residues-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-residues-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-residues-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-molecules-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-molecules-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-molecules-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-fragments-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-fragments-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-fragments-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-atoms-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-atoms-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-atoms-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-group-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-group-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-group-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-segments-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-segments-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-segments-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-residues-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-residues-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-residues-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-molecules-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-molecules-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-molecules-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-fragments-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-fragments-residues] PASSED [ 38%] 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38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[atoms-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[atoms-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[group-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[group-residues] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[group-segments] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[segments-atoms] PASSED [ 38%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[segments-residues] PASSED [ 38%] 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PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_compound_exception_safety[cog-segments] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[atoms-atoms] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[atoms-residues] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[atoms-segments] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[group-atoms] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[group-residues] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[group-segments] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[segments-atoms] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[segments-residues] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[segments-segments] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[residues-atoms] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[residues-residues] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[residues-segments] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[molecules-atoms] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[molecules-residues] PASSED [ 39%] 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PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-group-residues] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-group-segments] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-segments-atoms] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-segments-residues] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-segments-segments] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-residues-atoms] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-residues-residues] PASSED [ 39%] 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39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-segments-segments] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-residues-atoms] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-residues-residues] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-residues-segments] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-molecules-atoms] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-molecules-residues] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-molecules-segments] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-fragments-atoms] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-fragments-residues] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-fragments-segments] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-atoms-atoms] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-atoms-residues] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-atoms-segments] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-group-atoms] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-group-residues] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-group-segments] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-segments-atoms] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-segments-residues] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-segments-segments] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-residues-atoms] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-residues-residues] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-residues-segments] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-molecules-atoms] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-molecules-residues] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-molecules-segments] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-fragments-atoms] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-fragments-residues] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-fragments-segments] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-atoms-atoms] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-atoms-residues] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-atoms-segments] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-group-atoms] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-group-residues] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-group-segments] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-segments-atoms] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-segments-residues] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-segments-segments] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-residues-atoms] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-residues-residues] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-residues-segments] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-molecules-atoms] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-molecules-residues] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-molecules-segments] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-fragments-atoms] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-fragments-residues] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-fragments-segments] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_box_fail[box0] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_box_fail[box1] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_small_box PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_large_box PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_atoms PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_group[com] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_group[cog] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_residues[com] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_residues[cog] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_segments[com] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_segments[cog] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_fragments[com] PASSED [ 39%] +testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_fragments[cog] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_is_periodic[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/adk_dims.dcd-False] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_is_periodic[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-True] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_is_periodic[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-True] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_coordsshape[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/adk_dims.dcd-3341] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_coordsshape[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-5545] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_coordsshape[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-375] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_unit_cell[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/adk_dims.dcd-unit_cell0] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_unit_cell[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-unit_cell1] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_unit_cell[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-unit_cell2] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_seek_over_max PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_pickle PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_pickle_last PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_pickle_closed PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_pickle_after_read PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_pickle_immediately PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_seek_normal[10] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_seek_normal[42] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_seek_normal[21] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_seek_negative PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_iteration PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_open_wrong_mode PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_raise_not_existing PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_zero_based_frames_counting PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_natoms[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/adk_dims.dcd-3341] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_natoms[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-5545] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_natoms[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-375] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_closed PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_length_traj[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/adk_dims.dcd-98] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_length_traj[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-1] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_length_traj[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-10] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_write_mode_file PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_iterating_twice PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_header_remarks[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/adk_dims.dcd-* DIMS ADK SEQUENCE FOR PORE PROGRAM * WRITTEN BY LIZ DENNING (6.2008) * DATE: 6/ 6/ 8 17:23:56 CREATED BY USER: denniej0 ] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_header_remarks[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-Created by DCD pluginREMARKS Created 06 July, 2014 at 17:29Y5~CORD,] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_header_remarks[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-* CHARMM TRICLINIC BOX TESTING * (OLIVER BECKSTEIN 2014) * BASED ON NPTDYN.INP : SCOTT FELLER, NIH, 7/15/95 * TEST EXTENDED SYSTEM CONSTANT PRESSURE AND TEMPERATURE * DYNAMICS WITH WATER BOX. * DATE: 7/ 7/14 13:59:46 CREATED BY USER: oliver ] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_coord_values[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/adk_dims.dcd-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/legacy_DCD_adk_coords.npy-frames0] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_coord_values[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/legacy_DCD_NAMD_coords.npy-frames1] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_coord_values[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/legacy_DCD_c36_coords.npy-frames2] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/adk_dims.dcd-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/legacy_DCD_adk_coords.npy-frame_idx0] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/legacy_DCD_NAMD_coords.npy-frame_idx1] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/legacy_DCD_c36_coords.npy-frame_idx2] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_header PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_no_header PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_header_twice PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_header_wrong_mode PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_mode PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_remarks_property PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_header PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_num_frames PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_dcd_coordinate_data_shape PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_seek PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_coord_match PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_unit_cell PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_all_dtypes[int32] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_all_dtypes[int64] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_all_dtypes[float32] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_all_dtypes[float64] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_all_dtypes[int] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_all_dtypes[float] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_array_like[array] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_array_like[list] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_wrong_shape_xyz PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_wrong_shape_box PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_relative_frame_sizes[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/adk_dims.dcd] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_relative_frame_sizes[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_relative_frame_sizes[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_file_size_breakdown[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/adk_dims.dcd] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_file_size_breakdown[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_file_size_breakdown[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_nframessize_int[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/adk_dims.dcd] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_nframessize_int[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_nframessize_int[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice0-98] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice1-98] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice2-98] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice3-98] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice4-98] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice5-2] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice6-10] PASSED [ 39%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice7-8] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice8-1] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice9-0] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice10-1] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice11-1] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice12-2] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice13-1] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice14-1] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice15-2] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice16-4] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice17-3] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice18-2] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_order[fac-shape0] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_order[fca-shape1] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_order[afc-shape2] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_order[acf-shape3] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_order[caf-shape4] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_order[cfa-shape5] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_atomindices[indices0] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_atomindices[indices1] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_atomindices[indices2] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_random_unitcell PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_natoms[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_natoms[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_over_seek[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_over_seek[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_read_after_iteration[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_read_after_iteration[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_zero_based_frame_tell[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_zero_based_frame_tell[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_read_closed[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_read_closed[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_iter[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_iter[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_double_iter[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_double_iter[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_seek[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_seek[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_seek_negative[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_seek_negative[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_len[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_len[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_raise_not_existing[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_raise_not_existing[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_open_wrong_mode[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_open_wrong_mode[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_read_write_mode_file[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_read_write_mode_file[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle_last_frame[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle_last_frame[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle_closed[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle_closed[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle_immediately[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle_immediately[/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_offset[XTCFile-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-offsets0] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_offset[TRRFile-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-offsets1] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_set_offsets[XTCFile-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-offsets0] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_set_offsets[TRRFile-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-offsets1] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_fail_wrong_offsets[XTCFile-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-offsets0] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_fail_wrong_offsets[TRRFile-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-offsets1] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_overflow[XTCFile-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-offsets0] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_overflow[TRRFile-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-offsets1] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_tell_all[XTCFile-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-offsets0] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_tell_all[TRRFile-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-offsets1] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_tell_all_bytes[XTCFile-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-offsets0] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_tell_all_bytes[TRRFile-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-offsets1] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_tell_largefile[XTCFile-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-offsets0] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_tell_largefile[TRRFile-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-offsets1] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_steps[XTCFile-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_steps[TRRFile-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_time[XTCFile-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_time[TRRFile-/build/reproducible-path/mdanalysis-2.8.0/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_box_xtc PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_xyz_xtc PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_box_trr PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_xyz_trr PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_velocities_trr PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_forces_trr PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_lmbda_trr PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_step_xtc PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_time_xtc PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_prec_xtc PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_box_xtc PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_xyx_xtc PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_dtype[int32] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_dtype[int64] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_dtype[float32] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_dtype[float64] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_dtype[int] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_dtype[float] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_array_like[array] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_array_like[list] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_prec PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_different_box_xtc PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_different_x_xtc PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_different_prec PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_step_trr PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_time_trr PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_box_trr PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_xyx_trr PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_velocities_trr PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_forces_trr PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_trr_dtype[int32] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_trr_dtype[int64] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_trr_dtype[float32] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_trr_dtype[float64] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_trr_dtype[int] PASSED [ 40%] +testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_trr_dtype[float] PASSED [ 40%] 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43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-nsgrid-box0-1] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-nsgrid-box0-100] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-nsgrid-box1-1] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-nsgrid-box1-100] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-nsgrid-None-1] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-nsgrid-None-100] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-bruteforce-box0-1] PASSED [ 43%] 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PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-pkdtree-box1-1] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-pkdtree-box1-100] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-pkdtree-None-1] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-pkdtree-None-100] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-nsgrid-box0-1] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-nsgrid-box0-100] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-nsgrid-box1-1] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-nsgrid-box1-100] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-nsgrid-None-1] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-nsgrid-None-100] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[1-0.02-_bruteforce_capped_self-None] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[1-0.02-_bruteforce_capped_self-box1] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[1-0.02-_bruteforce_capped_self-box2] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[1-0.2-_bruteforce_capped_self-None] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[1-0.2-_bruteforce_capped_self-box1] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[1-0.2-_bruteforce_capped_self-box2] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[600-0.02-_pkdtree_capped_self-None] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[600-0.02-_pkdtree_capped_self-box1] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[600-0.02-_pkdtree_capped_self-box2] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[600-0.2-_nsgrid_capped_self-None] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[600-0.2-_nsgrid_capped_self-box1] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[600-0.2-_nsgrid_capped_self-box2] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[1-0.02-_bruteforce_capped-None] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[1-0.02-_bruteforce_capped-box1] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[1-0.02-_bruteforce_capped-box2] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[1-0.2-_bruteforce_capped-None] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[1-0.2-_bruteforce_capped-box1] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[1-0.2-_bruteforce_capped-box2] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[200-0.02-_nsgrid_capped-None] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[200-0.02-_nsgrid_capped-box1] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[200-0.02-_nsgrid_capped-box2] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[200-0.35-_bruteforce_capped-None] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[200-0.35-_bruteforce_capped-box1] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[200-0.35-_bruteforce_capped-box2] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[10000-0.35-_nsgrid_capped-None] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[10000-0.35-_nsgrid_capped-box1] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[10000-0.35-_nsgrid_capped-box2] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_noPBC[ref_system-serial] PASSED [ 43%] +testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_noPBC[ref_system-openmp] Tue Mar 4 23:21:27 UTC 2025 - pbuilder was killed by timeout after 24h.