Diff of the two buildlogs: -- --- b1/build.log 2024-12-30 03:30:42.486161850 +0000 +++ b2/build.log 2024-12-30 03:38:19.421274399 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Dec 29 15:28:15 -12 2024 -I: pbuilder-time-stamp: 1735529295 +I: Current time: Mon Dec 30 17:30:54 +14 2024 +I: pbuilder-time-stamp: 1735529454 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: applying 32-bits.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/12120/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/22058/tmp/hooks/D01_modify_environment starting +debug: Running on virt64c. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 30 03:31 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/22058/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/22058/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='4e41a61df3274b739fe4313e530e70b6' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='12120' - PS1='# ' - PS2='> ' + INVOCATION_ID=cba4b7681822403f99327832e1f5ddb5 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=22058 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.h8fqCmoZ/pbuilderrc_lEqE --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.h8fqCmoZ/b1 --logfile b1/build.log phylonium_1.7-3.dsc' - SUDO_GID='110' - SUDO_UID='103' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.h8fqCmoZ/pbuilderrc_JSFw --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.h8fqCmoZ/b2 --logfile b2/build.log phylonium_1.7-3.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt32z 6.1.0-28-armmp-lpae #1 SMP Debian 6.1.119-1 (2024-11-22) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/12120/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/22058/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -141,7 +173,7 @@ Get: 30 http://deb.debian.org/debian unstable/main armhf debhelper all 13.23 [919 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf libdivsufsort3 armhf 2.0.1-6+b1 [45.0 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf libdivsufsort-dev armhf 2.0.1-6+b1 [19.1 kB] -Fetched 19.6 MB in 2s (11.4 MB/s) +Fetched 19.6 MB in 2s (8464 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19573 files and directories currently installed.) @@ -284,7 +316,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/phylonium-1.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../phylonium_1.7-3_source.changes +I: user script /srv/workspace/pbuilder/22058/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/22058/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/phylonium-1.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../phylonium_1.7-3_source.changes dpkg-buildpackage: info: source package phylonium dpkg-buildpackage: info: source version 1.7-3 dpkg-buildpackage: info: source distribution unstable @@ -404,27 +440,27 @@ config.status: executing depfiles commands make[1]: Leaving directory '/build/reproducible-path/phylonium-1.7' dh_auto_build - make -j3 + make -j4 make[1]: Entering directory '/build/reproducible-path/phylonium-1.7' make all-recursive make[2]: Entering directory '/build/reproducible-path/phylonium-1.7' Making all in libs make[3]: Entering directory '/build/reproducible-path/phylonium-1.7/libs' rm -f libcompat.a -gcc -DHAVE_CONFIG_H -I. -I.. -I../opt -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phylonium-1.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o libpfasta_a-pfasta.o `test -f 'pfasta.c' || echo './'`pfasta.c -gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phylonium-1.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o revseqcmp.o revseqcmp.c ar cru libcompat.a -ar: `u' modifier ignored since `D' is the default (see `U') +ar: gcc -DHAVE_CONFIG_H -I. -I.. -I../opt -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phylonium-1.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o libpfasta_a-pfasta.o `test -f 'pfasta.c' || echo './'`pfasta.c +`u' modifier ignored since `D' is the default (see `U') ranlib libcompat.a +gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phylonium-1.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o revseqcmp.o revseqcmp.c gcc -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phylonium-1.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o seqcmp.o seqcmp.c -rm -f librevseqcmp.a -ar cru librevseqcmp.a revseqcmp.o rm -f libseqcmp.a -ar: `u' modifier ignored since `D' is the default (see `U') -ranlib librevseqcmp.a ar cru libseqcmp.a seqcmp.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libseqcmp.a +rm -f librevseqcmp.a +ar cru librevseqcmp.a revseqcmp.o +ar: `u' modifier ignored since `D' is the default (see `U') +ranlib librevseqcmp.a rm -f libpfasta.a ar cru libpfasta.a libpfasta_a-pfasta.o ar: `u' modifier ignored since `D' is the default (see `U') @@ -450,7 +486,7 @@ make[2]: Leaving directory '/build/reproducible-path/phylonium-1.7' make[1]: Leaving directory '/build/reproducible-path/phylonium-1.7' dh_auto_test - make -j3 check "TESTSUITEFLAGS=-j3 --verbose" VERBOSE=1 + make -j4 check "TESTSUITEFLAGS=-j4 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/phylonium-1.7' Making check in libs make[2]: Entering directory '/build/reproducible-path/phylonium-1.7/libs' @@ -468,7 +504,6 @@ g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I../src -I../libs -std=c++17 -Wall -Wextra -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -ggdb -g -O2 -ffile-prefix-map=/build/reproducible-path/phylonium-1.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o unittests-esa.o `test -f '../src/esa.cxx' || echo './'`../src/esa.cxx g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I../src -I../libs -std=c++17 -Wall -Wextra -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -ggdb -g -O2 -ffile-prefix-map=/build/reproducible-path/phylonium-1.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o unittests-evo_model.o `test -f '../src/evo_model.cxx' || echo './'`../src/evo_model.cxx g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I../src -I../libs -std=c++17 -Wall -Wextra -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -ggdb -g -O2 -ffile-prefix-map=/build/reproducible-path/phylonium-1.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o unittests-process.o `test -f '../src/process.cxx' || echo './'`../src/process.cxx -g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I../src -I../libs -std=c++17 -Wall -Wextra -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -ggdb -g -O2 -ffile-prefix-map=/build/reproducible-path/phylonium-1.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o unittests-sequence.o `test -f '../src/sequence.cxx' || echo './'`../src/sequence.cxx ../src/process.cxx:433: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 433 | #pragma omp parallel for num_threads(THREADS) ../src/process.cxx:445: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas] @@ -485,6 +520,7 @@ 539 | #pragma omp atomic read ../src/process.cxx:545: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas] 545 | #pragma omp critical +g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I../src -I../libs -std=c++17 -Wall -Wextra -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -ggdb -g -O2 -ffile-prefix-map=/build/reproducible-path/phylonium-1.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o unittests-sequence.o `test -f '../src/sequence.cxx' || echo './'`../src/sequence.cxx g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I../src -I../libs -std=c++17 -Wall -Wextra -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -ggdb -g -O2 -ffile-prefix-map=/build/reproducible-path/phylonium-1.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o unittests-Tmain.o `test -f 'Tmain.cxx' || echo './'`Tmain.cxx g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I../src -I../libs -std=c++17 -Wall -Wextra -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -ggdb -g -O2 -ffile-prefix-map=/build/reproducible-path/phylonium-1.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o unittests-Tprocess.o `test -f 'Tprocess.cxx' || echo './'`Tprocess.cxx g++ -std=gnu++17 -DHAVE_CONFIG_H -I. -I.. -I../src -I../libs -std=c++17 -Wall -Wextra -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -ggdb -g -O2 -ffile-prefix-map=/build/reproducible-path/phylonium-1.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o unittests-Tsequence.o `test -f 'Tsequence.cxx' || echo './'`Tsequence.cxx @@ -517,7 +553,7 @@ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/phylonium/ - make -j3 install DESTDIR=/build/reproducible-path/phylonium-1.7/debian/phylonium AM_UPDATE_INFO_DIR=no + make -j4 install DESTDIR=/build/reproducible-path/phylonium-1.7/debian/phylonium AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/phylonium-1.7' Making install in libs make[2]: Entering directory '/build/reproducible-path/phylonium-1.7/libs' @@ -529,8 +565,8 @@ Making install in src make[2]: Entering directory '/build/reproducible-path/phylonium-1.7/src' make[3]: Entering directory '/build/reproducible-path/phylonium-1.7/src' -make[3]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/build/reproducible-path/phylonium-1.7/debian/phylonium/usr/bin' +make[3]: Nothing to be done for 'install-data-am'. /usr/bin/install -c phylonium '/build/reproducible-path/phylonium-1.7/debian/phylonium/usr/bin' make[3]: Leaving directory '/build/reproducible-path/phylonium-1.7/src' make[2]: Leaving directory '/build/reproducible-path/phylonium-1.7/src' @@ -584,12 +620,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/22058/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/22058/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/12120 and its subdirectories -I: Current time: Sun Dec 29 15:30:38 -12 2024 -I: pbuilder-time-stamp: 1735529438 +I: removing directory /srv/workspace/pbuilder/22058 and its subdirectories +I: Current time: Mon Dec 30 17:38:15 +14 2024 +I: pbuilder-time-stamp: 1735529895