Diff of the two buildlogs: -- --- b1/build.log 2025-01-20 02:57:29.683963569 +0000 +++ b2/build.log 2025-01-20 03:13:10.077627172 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Jan 19 14:35:50 -12 2025 -I: pbuilder-time-stamp: 1737340550 +I: Current time: Mon Jan 20 16:57:55 +14 2025 +I: pbuilder-time-stamp: 1737341875 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3234/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/18546/tmp/hooks/D01_modify_environment starting +debug: Running on virt64z. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 20 02:58 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/18546/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/18546/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='8f6fce00da4a49d78ca0cd4842b32048' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3234' - PS1='# ' - PS2='> ' + INVOCATION_ID=3b9b2002c91c446ab916ca5fec462cfc + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=18546 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZFm2q99I/pbuilderrc_yK7p --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZFm2q99I/b1 --logfile b1/build.log racon_1.5.0-3.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZFm2q99I/pbuilderrc_oMXA --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZFm2q99I/b2 --logfile b2/build.log racon_1.5.0-3.dsc' + SUDO_GID=110 + SUDO_UID=103 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt32a 6.1.0-30-armmp-lpae #1 SMP Debian 6.1.124-1 (2025-01-12) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-30-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3234/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/18546/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -195,7 +227,7 @@ Get: 70 http://deb.debian.org/debian unstable/main armhf libspoa-dev armhf 4.1.4-2+b1 [9788 B] Get: 71 http://deb.debian.org/debian unstable/main armhf libthread-pool-dev armhf 4.0.0-2 [7304 B] Get: 72 http://deb.debian.org/debian unstable/main armhf rampler armhf 2.1.1-1 [19.3 kB] -Fetched 35.4 MB in 1s (45.7 MB/s) +Fetched 35.4 MB in 14s (2523 kB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19564 files and directories currently installed.) @@ -498,7 +530,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes +I: user script /srv/workspace/pbuilder/18546/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/18546/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable @@ -524,7 +560,7 @@ -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done --- Configuring done (1.4s) +-- Configuring done (1.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -539,7 +575,7 @@ sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' dh_auto_build -O--buildsystem=cmake - cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks @@ -551,12 +587,14 @@ make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' -[ 20%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o +[ 10%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o [ 20%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o -[ 30%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o -/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/logger.cpp.o -MF CMakeFiles/racon.dir/src/logger.cpp.o.d -o CMakeFiles/racon.dir/src/logger.cpp.o -c /build/reproducible-path/racon-1.5.0/src/logger.cpp +[ 30%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/polisher.cpp.o -MF CMakeFiles/racon.dir/src/polisher.cpp.o.d -o CMakeFiles/racon.dir/src/polisher.cpp.o -c /build/reproducible-path/racon-1.5.0/src/polisher.cpp +[ 40%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o +/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/logger.cpp.o -MF CMakeFiles/racon.dir/src/logger.cpp.o.d -o CMakeFiles/racon.dir/src/logger.cpp.o -c /build/reproducible-path/racon-1.5.0/src/logger.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/overlap.cpp.o -MF CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/reproducible-path/racon-1.5.0/src/overlap.cpp +/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp /build/reproducible-path/racon-1.5.0/src/overlap.cpp: In member function 'virtual void racon::Overlap::align_overlaps(const char*, uint32_t, const char*, uint32_t)': /build/reproducible-path/racon-1.5.0/src/overlap.cpp:219:48: warning: format '%zu' expects argument of type 'size_t', but argument 3 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 219 | "edlib unable to align pair (%zu x %zu)!\n", q_id_, t_id_); @@ -570,8 +608,6 @@ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu -[ 40%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o -/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp [ 50%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp /build/reproducible-path/racon-1.5.0/src/window.cpp: In member function 'bool racon::Window::generate_consensus(std::shared_ptr, bool)': @@ -595,15 +631,15 @@ make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' cd /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf/CMakeFiles/racon_test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' -make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/build -make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' +make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' +make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' -[ 80%] Building CXX object CMakeFiles/racon_exe.dir/src/main.cpp.o +[ 70%] Building CXX object CMakeFiles/racon_exe.dir/src/main.cpp.o +/usr/bin/c++ -DVERSION=\"1.5.0\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c /build/reproducible-path/racon-1.5.0/src/main.cpp [ 80%] Building CXX object CMakeFiles/racon_test.dir/test/racon_test.cpp.o /usr/bin/c++ -DTEST_DATA=\"/build/reproducible-path/racon-1.5.0/test/data/\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/racon_test.dir/test/racon_test.cpp.o -MF CMakeFiles/racon_test.dir/test/racon_test.cpp.o.d -o CMakeFiles/racon_test.dir/test/racon_test.cpp.o -c /build/reproducible-path/racon-1.5.0/test/racon_test.cpp -/usr/bin/c++ -DVERSION=\"1.5.0\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c /build/reproducible-path/racon-1.5.0/src/main.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/racon_exe.dir/link.d CMakeFiles/racon_exe.dir/src/main.cpp.o -o bin/racon lib/libracon.a -ledlib -lspoa -lpthread -lz @@ -631,113 +667,113 @@ [ RUN ] RaconInitializeTest.SequencesPathExtensionError [ OK ] RaconInitializeTest.SequencesPathExtensionError (2 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError -[ OK ] RaconInitializeTest.OverlapsPathExtensionError (6 ms) +[ OK ] RaconInitializeTest.OverlapsPathExtensionError (4 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError -[ OK ] RaconInitializeTest.TargetPathExtensionError (6 ms) -[----------] 5 tests from RaconInitializeTest (21 ms total) +[ OK ] RaconInitializeTest.TargetPathExtensionError (5 ms) +[----------] 5 tests from RaconInitializeTest (17 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities -[racon::Polisher::initialize] loaded target sequences 0.002013 s -[racon::Polisher::initialize] loaded sequences 0.273501 s -[racon::Polisher::initialize] loaded overlaps 0.001080 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.055220 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.079201 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.111200 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.135189 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.167187 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.191204 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.255209 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.291197 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.315181 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.339190 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.375200 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.399184 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.427192 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.443194 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.463208 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.503204 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.515181 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.543184 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.579197 s [racon::Polisher::initialize] aligning overlaps [====================] 0.616934 s -[racon::Polisher::initialize] transformed data into windows 0.008308 s -[racon::Polisher::polish] generating consensus [=> ] 0.505797 s [racon::Polisher::polish] generating consensus [==> ] 0.969791 s [racon::Polisher::polish] generating consensus [===> ] 1.345791 s [racon::Polisher::polish] generating consensus [====> ] 1.641795 s [racon::Polisher::polish] generating consensus [=====> ] 1.809772 s [racon::Polisher::polish] generating consensus [======> ] 1.997776 s [racon::Polisher::polish] generating consensus [=======> ] 2.169770 s [racon::Polisher::polish] generating consensus [========> ] 2.377797 s [racon::Polisher::polish] generating consensus [=========> ] 2.685778 s [racon::Polisher::polish] generating consensus [==========> ] 3.029800 s [racon::Polisher::polish] generating consensus [===========> ] 3.585779 s [racon::Polisher::polish] generating consensus [============> ] 4.301787 s [racon::Polisher::polish] generating consensus [=============> ] 5.261792 s [racon::Polisher::polish] generating consensus [==============> ] 6.245785 s [racon::Polisher::polish] generating consensus [===============> ] 6.901797 s [racon::Polisher::polish] generating consensus [================> ] 7.386426 s [racon::Polisher::polish] generating consensus [=================> ] 7.969790 s [racon::Polisher::polish] generating consensus [==================> ] 8.317799 s [racon::Polisher::polish] generating consensus [===================>] 8.781787 s [racon::Polisher::polish] generating consensus [====================] 10.599842 s -[racon::Polisher::] total = 11.534151 s -[ OK ] RaconPolishingTest.ConsensusWithQualities (11559 ms) +[racon::Polisher::initialize] loaded target sequences 0.001399 s +[racon::Polisher::initialize] loaded sequences 0.067986 s +[racon::Polisher::initialize] loaded overlaps 0.000988 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.147229 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.207174 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.267193 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.307195 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.391183 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.439208 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.553873 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.623219 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.671198 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.691860 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.731876 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.755826 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.783665 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.799667 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.879873 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.967853 s [racon::Polisher::initialize] aligning overlaps [=================> ] 1.003831 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.063860 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.091401 s [racon::Polisher::initialize] aligning overlaps [====================] 1.115971 s +[racon::Polisher::initialize] transformed data into windows 0.003296 s +[racon::Polisher::polish] generating consensus [=> ] 0.619332 s [racon::Polisher::polish] generating consensus [==> ] 1.235871 s [racon::Polisher::polish] generating consensus [===> ] 1.856169 s [racon::Polisher::polish] generating consensus [====> ] 2.299957 s [racon::Polisher::polish] generating consensus [=====> ] 2.559868 s [racon::Polisher::polish] generating consensus [======> ] 2.823881 s [racon::Polisher::polish] generating consensus [=======> ] 3.063917 s [racon::Polisher::polish] generating consensus [========> ] 3.351908 s [racon::Polisher::polish] generating consensus [=========> ] 3.780000 s [racon::Polisher::polish] generating consensus [==========> ] 4.263876 s [racon::Polisher::polish] generating consensus [===========> ] 5.059308 s [racon::Polisher::polish] generating consensus [============> ] 5.848399 s [racon::Polisher::polish] generating consensus [=============> ] 7.084066 s [racon::Polisher::polish] generating consensus [==============> ] 8.296016 s [racon::Polisher::polish] generating consensus [===============> ] 9.072005 s [racon::Polisher::polish] generating consensus [================> ] 9.671867 s [racon::Polisher::polish] generating consensus [=================> ] 10.279902 s [racon::Polisher::polish] generating consensus [==================> ] 10.595845 s [racon::Polisher::polish] generating consensus [===================>] 11.108160 s [racon::Polisher::polish] generating consensus [====================] 12.709390 s +[racon::Polisher::] total = 13.928646 s +[ OK ] RaconPolishingTest.ConsensusWithQualities (13944 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities -[racon::Polisher::initialize] loaded target sequences 0.001473 s -[racon::Polisher::initialize] loaded sequences 0.049435 s -[racon::Polisher::initialize] loaded overlaps 0.000614 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.050151 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.074138 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.106148 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.130137 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.162131 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.186127 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.254134 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.286130 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.314128 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.334124 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.366135 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.402136 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.426135 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.442119 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.462142 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.498125 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.514159 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.538139 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.574145 s [racon::Polisher::initialize] aligning overlaps [====================] 0.615029 s -[racon::Polisher::initialize] transformed data into windows 0.001012 s -[racon::Polisher::polish] generating consensus [=> ] 0.541928 s [racon::Polisher::polish] generating consensus [==> ] 1.169937 s [racon::Polisher::polish] generating consensus [===> ] 1.629925 s [racon::Polisher::polish] generating consensus [====> ] 1.989947 s [racon::Polisher::polish] generating consensus [=====> ] 2.221926 s [racon::Polisher::polish] generating consensus [======> ] 2.473917 s [racon::Polisher::polish] generating consensus [=======> ] 2.745946 s [racon::Polisher::polish] generating consensus [========> ] 3.001962 s [racon::Polisher::polish] generating consensus [=========> ] 3.361918 s [racon::Polisher::polish] generating consensus [==========> ] 4.001925 s [racon::Polisher::polish] generating consensus [===========> ] 4.689921 s [racon::Polisher::polish] generating consensus [============> ] 5.501924 s [racon::Polisher::polish] generating consensus [=============> ] 6.709958 s [racon::Polisher::polish] generating consensus [==============> ] 7.605946 s [racon::Polisher::polish] generating consensus [===============> ] 8.485924 s [racon::Polisher::polish] generating consensus [================> ] 9.305929 s [racon::Polisher::polish] generating consensus [=================> ] 10.089930 s [racon::Polisher::polish] generating consensus [==================> ] 10.573939 s [racon::Polisher::polish] generating consensus [===================>] 11.161969 s [racon::Polisher::polish] generating consensus [====================] 14.439502 s -[racon::Polisher::] total = 15.138499 s -[ OK ] RaconPolishingTest.ConsensusWithoutQualities (15162 ms) +[racon::Polisher::initialize] loaded target sequences 0.001181 s +[racon::Polisher::initialize] loaded sequences 0.028707 s +[racon::Polisher::initialize] loaded overlaps 0.000712 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.103374 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.151384 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.199381 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.259247 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.299446 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.331450 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.399498 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.438653 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.467389 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.487351 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.563558 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.607492 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.645304 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.727478 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.803479 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.871448 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.939496 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.969040 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.981193 s [racon::Polisher::initialize] aligning overlaps [====================] 0.987781 s +[racon::Polisher::initialize] transformed data into windows 0.001496 s +[racon::Polisher::polish] generating consensus [=> ] 0.785114 s [racon::Polisher::polish] generating consensus [==> ] 1.677195 s [racon::Polisher::polish] generating consensus [===> ] 2.125725 s [racon::Polisher::polish] generating consensus [====> ] 2.401199 s [racon::Polisher::polish] generating consensus [=====> ] 3.017136 s [racon::Polisher::polish] generating consensus [======> ] 3.377014 s [racon::Polisher::polish] generating consensus [=======> ] 3.705169 s [racon::Polisher::polish] generating consensus [========> ] 4.041063 s [racon::Polisher::polish] generating consensus [=========> ] 4.441126 s [racon::Polisher::polish] generating consensus [==========> ] 5.188562 s [racon::Polisher::polish] generating consensus [===========> ] 6.237075 s [racon::Polisher::polish] generating consensus [============> ] 7.216980 s [racon::Polisher::polish] generating consensus [=============> ] 8.536641 s [racon::Polisher::polish] generating consensus [==============> ] 10.128652 s [racon::Polisher::polish] generating consensus [===============> ] 10.796385 s [racon::Polisher::polish] generating consensus [================> ] 11.589001 s [racon::Polisher::polish] generating consensus [=================> ] 12.788640 s [racon::Polisher::polish] generating consensus [==================> ] 13.356614 s [racon::Polisher::polish] generating consensus [===================>] 14.216911 s [racon::Polisher::polish] generating consensus [====================] 17.975311 s +[racon::Polisher::] total = 19.049288 s +[ OK ] RaconPolishingTest.ConsensusWithoutQualities (19068 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments -[racon::Polisher::initialize] loaded target sequences 0.001769 s -[racon::Polisher::initialize] loaded sequences 0.085085 s -[racon::Polisher::initialize] loaded overlaps 0.040335 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.009565 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.009595 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.011934 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.012120 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.012297 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.012464 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.012634 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.012804 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.012969 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.013133 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.013300 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.013466 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.013631 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.013799 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.013965 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.014130 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.014296 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.014461 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.014625 s [racon::Polisher::initialize] aligning overlaps [====================] 0.014792 s -[racon::Polisher::initialize] transformed data into windows 0.007538 s -[racon::Polisher::polish] generating consensus [=> ] 0.508743 s [racon::Polisher::polish] generating consensus [==> ] 0.980773 s [racon::Polisher::polish] generating consensus [===> ] 1.372771 s [racon::Polisher::polish] generating consensus [====> ] 1.688833 s [racon::Polisher::polish] generating consensus [=====> ] 1.828781 s [racon::Polisher::polish] generating consensus [======> ] 1.988765 s [racon::Polisher::polish] generating consensus [=======> ] 2.192757 s [racon::Polisher::polish] generating consensus [========> ] 2.396814 s [racon::Polisher::polish] generating consensus [=========> ] 2.644801 s [racon::Polisher::polish] generating consensus [==========> ] 3.036807 s [racon::Polisher::polish] generating consensus [===========> ] 3.516787 s [racon::Polisher::polish] generating consensus [============> ] 4.212805 s [racon::Polisher::polish] generating consensus [=============> ] 5.152863 s [racon::Polisher::polish] generating consensus [==============> ] 6.148868 s [racon::Polisher::polish] generating consensus [===============> ] 7.028830 s [racon::Polisher::polish] generating consensus [================> ] 7.576713 s [racon::Polisher::polish] generating consensus [=================> ] 8.232613 s [racon::Polisher::polish] generating consensus [==================> ] 8.640658 s [racon::Polisher::polish] generating consensus [===================>] 9.028649 s [racon::Polisher::polish] generating consensus [====================] 10.648648 s -[racon::Polisher::] total = 10.835315 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (10860 ms) +[racon::Polisher::initialize] loaded target sequences 0.001458 s +[racon::Polisher::initialize] loaded sequences 0.062389 s +[racon::Polisher::initialize] loaded overlaps 0.036246 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.017304 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.017342 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.021313 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.021604 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.021620 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.021634 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.021647 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.021660 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.021672 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.021684 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.021696 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.021708 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.021722 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.021734 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.021747 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.021759 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.021772 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.027202 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.027845 s [racon::Polisher::initialize] aligning overlaps [====================] 0.028038 s +[racon::Polisher::initialize] transformed data into windows 0.003493 s +[racon::Polisher::polish] generating consensus [=> ] 0.745399 s [racon::Polisher::polish] generating consensus [==> ] 1.499122 s [racon::Polisher::polish] generating consensus [===> ] 2.369905 s [racon::Polisher::polish] generating consensus [====> ] 2.805047 s [racon::Polisher::polish] generating consensus [=====> ] 2.900714 s [racon::Polisher::polish] generating consensus [======> ] 3.094195 s [racon::Polisher::polish] generating consensus [=======> ] 3.404422 s [racon::Polisher::polish] generating consensus [========> ] 3.724787 s [racon::Polisher::polish] generating consensus [=========> ] 4.074955 s [racon::Polisher::polish] generating consensus [==========> ] 4.788761 s [racon::Polisher::polish] generating consensus [===========> ] 5.452472 s [racon::Polisher::polish] generating consensus [============> ] 6.509430 s [racon::Polisher::polish] generating consensus [=============> ] 7.957374 s [racon::Polisher::polish] generating consensus [==============> ] 9.145418 s [racon::Polisher::polish] generating consensus [===============> ] 9.884966 s [racon::Polisher::polish] generating consensus [================> ] 10.745577 s [racon::Polisher::polish] generating consensus [=================> ] 11.436797 s [racon::Polisher::polish] generating consensus [==================> ] 11.745627 s [racon::Polisher::polish] generating consensus [===================>] 11.997385 s [racon::Polisher::polish] generating consensus [====================] 12.863773 s +[racon::Polisher::] total = 13.025244 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (13045 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments -[racon::Polisher::initialize] loaded target sequences 0.001530 s -[racon::Polisher::initialize] loaded sequences 0.050425 s -[racon::Polisher::initialize] loaded overlaps 0.041285 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.008259 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.008551 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.008661 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.008703 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.008892 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.009000 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.009104 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.009210 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.009312 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.009418 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.009569 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.009690 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.009798 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.009903 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.010010 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.010117 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.010219 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.010324 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.010430 s [racon::Polisher::initialize] aligning overlaps [====================] 0.010572 s -[racon::Polisher::initialize] transformed data into windows 0.000994 s -[racon::Polisher::polish] generating consensus [=> ] 0.517539 s [racon::Polisher::polish] generating consensus [==> ] 1.085539 s [racon::Polisher::polish] generating consensus [===> ] 1.533549 s [racon::Polisher::polish] generating consensus [====> ] 1.873587 s [racon::Polisher::polish] generating consensus [=====> ] 2.085534 s [racon::Polisher::polish] generating consensus [======> ] 2.313540 s [racon::Polisher::polish] generating consensus [=======> ] 2.549547 s [racon::Polisher::polish] generating consensus [========> ] 2.873572 s [racon::Polisher::polish] generating consensus [=========> ] 3.201558 s [racon::Polisher::polish] generating consensus [==========> ] 3.737582 s [racon::Polisher::polish] generating consensus [===========> ] 4.361536 s [racon::Polisher::polish] generating consensus [============> ] 5.145521 s [racon::Polisher::polish] generating consensus [=============> ] 6.301600 s [racon::Polisher::polish] generating consensus [==============> ] 7.241556 s [racon::Polisher::polish] generating consensus [===============> ] 8.197542 s [racon::Polisher::polish] generating consensus [================> ] 9.033602 s [racon::Polisher::polish] generating consensus [=================> ] 9.829560 s [racon::Polisher::polish] generating consensus [==================> ] 10.257548 s [racon::Polisher::polish] generating consensus [===================>] 10.749558 s [racon::Polisher::polish] generating consensus [====================] 13.558788 s -[racon::Polisher::] total = 13.690660 s -[ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (13720 ms) +[racon::Polisher::initialize] loaded target sequences 0.001248 s +[racon::Polisher::initialize] loaded sequences 0.031153 s +[racon::Polisher::initialize] loaded overlaps 0.039305 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.012630 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.013314 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.013963 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.014620 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.015321 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.015896 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.015919 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.015934 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.015948 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.015962 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.015976 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.015989 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.016001 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.016015 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.016036 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.016051 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.016070 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.016086 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.016099 s [racon::Polisher::initialize] aligning overlaps [====================] 0.016120 s +[racon::Polisher::initialize] transformed data into windows 0.001434 s +[racon::Polisher::polish] generating consensus [=> ] 0.551368 s [racon::Polisher::polish] generating consensus [==> ] 1.179348 s [racon::Polisher::polish] generating consensus [===> ] 1.903307 s [racon::Polisher::polish] generating consensus [====> ] 2.455413 s [racon::Polisher::polish] generating consensus [=====> ] 2.743317 s [racon::Polisher::polish] generating consensus [======> ] 2.955378 s [racon::Polisher::polish] generating consensus [=======> ] 3.271435 s [racon::Polisher::polish] generating consensus [========> ] 3.703384 s [racon::Polisher::polish] generating consensus [=========> ] 4.143397 s [racon::Polisher::polish] generating consensus [==========> ] 4.811580 s [racon::Polisher::polish] generating consensus [===========> ] 5.583349 s [racon::Polisher::polish] generating consensus [============> ] 6.210594 s [racon::Polisher::polish] generating consensus [=============> ] 7.143211 s [racon::Polisher::polish] generating consensus [==============> ] 7.919230 s [racon::Polisher::polish] generating consensus [===============> ] 8.595458 s [racon::Polisher::polish] generating consensus [================> ] 9.219383 s [racon::Polisher::polish] generating consensus [=================> ] 10.018598 s [racon::Polisher::polish] generating consensus [==================> ] 10.467252 s [racon::Polisher::polish] generating consensus [===================>] 11.143295 s [racon::Polisher::polish] generating consensus [====================] 13.694117 s +[racon::Polisher::] total = 13.804478 s +[ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (13820 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow -[racon::Polisher::initialize] loaded target sequences 0.001734 s -[racon::Polisher::initialize] loaded sequences 0.097508 s -[racon::Polisher::initialize] loaded overlaps 0.000677 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.054948 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.090956 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.126860 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.150852 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.194867 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.226851 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.294874 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.330848 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.358862 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.382829 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.418845 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.449498 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.486860 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.502855 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.530879 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.554858 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.570779 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.594711 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.638730 s [racon::Polisher::initialize] aligning overlaps [====================] 0.672711 s -[racon::Polisher::initialize] transformed data into windows 0.008248 s -[racon::Polisher::polish] generating consensus [=> ] 1.889516 s [racon::Polisher::polish] generating consensus [==> ] 1.889577 s [racon::Polisher::polish] generating consensus [===> ] 3.517520 s [racon::Polisher::polish] generating consensus [====> ] 3.517591 s [racon::Polisher::polish] generating consensus [=====> ] 4.293543 s [racon::Polisher::polish] generating consensus [======> ] 4.293604 s [racon::Polisher::polish] generating consensus [=======> ] 4.909542 s [racon::Polisher::polish] generating consensus [========> ] 4.909621 s [racon::Polisher::polish] generating consensus [=========> ] 6.105534 s [racon::Polisher::polish] generating consensus [==========> ] 6.157527 s [racon::Polisher::polish] generating consensus [===========> ] 8.297528 s [racon::Polisher::polish] generating consensus [============> ] 11.133531 s [racon::Polisher::polish] generating consensus [=============> ] 11.133592 s [racon::Polisher::polish] generating consensus [==============> ] 15.761512 s [racon::Polisher::polish] generating consensus [===============> ] 15.761577 s [racon::Polisher::polish] generating consensus [================> ] 18.993545 s [racon::Polisher::polish] generating consensus [=================> ] 18.993594 s [racon::Polisher::polish] generating consensus [==================> ] 21.465620 s [racon::Polisher::polish] generating consensus [===================>] 21.465677 s [racon::Polisher::polish] generating consensus [====================] 26.220706 s -[racon::Polisher::] total = 27.042091 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (27125 ms) +[racon::Polisher::initialize] loaded target sequences 0.001274 s +[racon::Polisher::initialize] loaded sequences 0.060533 s +[racon::Polisher::initialize] loaded overlaps 0.000815 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.111646 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.139648 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.203976 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.263561 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.332241 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.403705 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.555798 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.625209 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.691760 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.743030 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.815691 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.867626 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.915642 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.916414 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.917156 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.917891 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.939382 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.960028 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.960056 s [racon::Polisher::initialize] aligning overlaps [====================] 0.965879 s +[racon::Polisher::initialize] transformed data into windows 0.002513 s +[racon::Polisher::polish] generating consensus [=> ] 1.542493 s [racon::Polisher::polish] generating consensus [==> ] 1.874932 s [racon::Polisher::polish] generating consensus [===> ] 3.506655 s [racon::Polisher::polish] generating consensus [====> ] 3.506713 s [racon::Polisher::polish] generating consensus [=====> ] 4.055263 s [racon::Polisher::polish] generating consensus [======> ] 4.056241 s [racon::Polisher::polish] generating consensus [=======> ] 4.775294 s [racon::Polisher::polish] generating consensus [========> ] 4.776266 s [racon::Polisher::polish] generating consensus [=========> ] 5.735268 s [racon::Polisher::polish] generating consensus [==========> ] 5.736227 s [racon::Polisher::polish] generating consensus [===========> ] 7.888198 s [racon::Polisher::polish] generating consensus [============> ] 7.888956 s [racon::Polisher::polish] generating consensus [=============> ] 11.619325 s [racon::Polisher::polish] generating consensus [==============> ] 11.620363 s [racon::Polisher::polish] generating consensus [===============> ] 15.047263 s [racon::Polisher::polish] generating consensus [================> ] 15.048094 s [racon::Polisher::polish] generating consensus [=================> ] 16.735356 s [racon::Polisher::polish] generating consensus [==================> ] 16.736124 s [racon::Polisher::polish] generating consensus [===================>] 17.814474 s [racon::Polisher::polish] generating consensus [====================] 19.452145 s +[racon::Polisher::] total = 20.514012 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (20556 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance -[racon::Polisher::initialize] loaded target sequences 0.001638 s -[racon::Polisher::initialize] loaded sequences 0.088469 s -[racon::Polisher::initialize] loaded overlaps 0.001141 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.118153 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.187623 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.243706 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.312512 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.355718 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.394280 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.479137 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.607447 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.629756 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.687608 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.731869 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.761198 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.772045 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.827703 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.895427 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.931937 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.989864 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.007565 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.008802 s [racon::Polisher::initialize] aligning overlaps [====================] 1.019495 s -[racon::Polisher::initialize] transformed data into windows 0.011922 s -[racon::Polisher::polish] generating consensus [=> ] 0.979390 s [racon::Polisher::polish] generating consensus [==> ] 1.436160 s [racon::Polisher::polish] generating consensus [===> ] 1.975495 s [racon::Polisher::polish] generating consensus [====> ] 2.360259 s [racon::Polisher::polish] generating consensus [=====> ] 2.520277 s [racon::Polisher::polish] generating consensus [======> ] 2.720535 s [racon::Polisher::polish] generating consensus [=======> ] 2.940122 s [racon::Polisher::polish] generating consensus [========> ] 3.208488 s [racon::Polisher::polish] generating consensus [=========> ] 3.388228 s [racon::Polisher::polish] generating consensus [==========> ] 4.016189 s [racon::Polisher::polish] generating consensus [===========> ] 4.540875 s [racon::Polisher::polish] generating consensus [============> ] 5.360260 s [racon::Polisher::polish] generating consensus [=============> ] 6.280231 s [racon::Polisher::polish] generating consensus [==============> ] 7.408368 s [racon::Polisher::polish] generating consensus [===============> ] 8.312291 s [racon::Polisher::polish] generating consensus [================> ] 8.860251 s [racon::Polisher::polish] generating consensus [=================> ] 9.628208 s [racon::Polisher::polish] generating consensus [==================> ] 10.144165 s [racon::Polisher::polish] generating consensus [===================>] 10.603480 s [racon::Polisher::polish] generating consensus [====================] 12.805784 s -[racon::Polisher::] total = 13.960530 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (13991 ms) +[racon::Polisher::initialize] loaded target sequences 0.001311 s +[racon::Polisher::initialize] loaded sequences 0.066159 s +[racon::Polisher::initialize] loaded overlaps 0.000776 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.088565 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.128929 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.184868 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.224759 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.260869 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.292979 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.353158 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.465250 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.485445 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.516894 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.552906 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.612195 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.669143 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.681129 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.725194 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.758335 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.804885 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.853216 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.854134 s [racon::Polisher::initialize] aligning overlaps [====================] 0.862408 s +[racon::Polisher::initialize] transformed data into windows 0.002895 s +[racon::Polisher::polish] generating consensus [=> ] 0.619937 s [racon::Polisher::polish] generating consensus [==> ] 1.191520 s [racon::Polisher::polish] generating consensus [===> ] 1.639493 s [racon::Polisher::polish] generating consensus [====> ] 2.055512 s [racon::Polisher::polish] generating consensus [=====> ] 2.255448 s [racon::Polisher::polish] generating consensus [======> ] 2.363466 s [racon::Polisher::polish] generating consensus [=======> ] 2.483431 s [racon::Polisher::polish] generating consensus [========> ] 2.579477 s [racon::Polisher::polish] generating consensus [=========> ] 2.802951 s [racon::Polisher::polish] generating consensus [==========> ] 3.078752 s [racon::Polisher::polish] generating consensus [===========> ] 3.741560 s [racon::Polisher::polish] generating consensus [============> ] 4.379553 s [racon::Polisher::polish] generating consensus [=============> ] 5.353326 s [racon::Polisher::polish] generating consensus [==============> ] 6.239512 s [racon::Polisher::polish] generating consensus [===============> ] 6.760735 s [racon::Polisher::polish] generating consensus [================> ] 7.263585 s [racon::Polisher::polish] generating consensus [=================> ] 8.080016 s [racon::Polisher::polish] generating consensus [==================> ] 8.603918 s [racon::Polisher::polish] generating consensus [===================>] 9.040889 s [racon::Polisher::polish] generating consensus [====================] 10.607558 s +[racon::Polisher::] total = 11.571606 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (11587 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities -[racon::Polisher::initialize] loaded target sequences 0.086627 s -[racon::Polisher::initialize] loaded sequences 0.091572 s -[racon::Polisher::initialize] loaded overlaps 0.022170 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.085197 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.129183 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.189170 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.268929 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.316912 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.329019 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.372915 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.384860 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.429089 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.473162 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.489113 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.517045 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.549138 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.589163 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.648929 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.728947 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.784880 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.841140 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.893468 s [racon::Polisher::initialize] aligning overlaps [====================] 0.908079 s -[racon::Polisher::initialize] transformed data into windows 0.012848 s -[racon::Polisher::polish] generating consensus [=> ] 0.507363 s [racon::Polisher::polish] generating consensus [==> ] 0.935328 s [racon::Polisher::polish] generating consensus [===> ] 1.399496 s [racon::Polisher::polish] generating consensus [====> ] 1.400610 s [racon::Polisher::polish] generating consensus [=====> ] 1.763591 s [racon::Polisher::polish] generating consensus [======> ] 1.911538 s [racon::Polisher::polish] generating consensus [=======> ] 2.195529 s [racon::Polisher::polish] generating consensus [========> ] 2.196729 s [racon::Polisher::polish] generating consensus [=========> ] 2.783327 s [racon::Polisher::polish] generating consensus [==========> ] 2.951015 s [racon::Polisher::polish] generating consensus [===========> ] 3.106737 s [racon::Polisher::polish] generating consensus [============> ] 3.162763 s [racon::Polisher::polish] generating consensus [=============> ] 3.354664 s [racon::Polisher::polish] generating consensus [==============> ] 3.355000 s [racon::Polisher::polish] generating consensus [===============> ] 3.794815 s [racon::Polisher::polish] generating consensus [================> ] 3.798871 s [racon::Polisher::polish] generating consensus [=================> ] 4.662809 s [racon::Polisher::polish] generating consensus [==================> ] 4.958833 s [racon::Polisher::polish] generating consensus [===================>] 5.281229 s [racon::Polisher::polish] generating consensus [====================] 5.355824 s -[racon::Polisher::] total = 6.480058 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (6505 ms) +[racon::Polisher::initialize] loaded target sequences 0.062837 s +[racon::Polisher::initialize] loaded sequences 0.064783 s +[racon::Polisher::initialize] loaded overlaps 0.018740 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.085649 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.134831 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.202783 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.280103 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.308527 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.311791 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.354380 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.359285 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.414623 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.497639 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.602369 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.690370 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.785708 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.897593 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.967207 s [racon::Polisher::initialize] aligning overlaps [================> ] 1.042341 s [racon::Polisher::initialize] aligning overlaps [=================> ] 1.082352 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.137557 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.150187 s [racon::Polisher::initialize] aligning overlaps [====================] 1.172464 s +[racon::Polisher::initialize] transformed data into windows 0.006368 s +[racon::Polisher::polish] generating consensus [=> ] 0.426331 s [racon::Polisher::polish] generating consensus [==> ] 0.814974 s [racon::Polisher::polish] generating consensus [===> ] 1.109269 s [racon::Polisher::polish] generating consensus [====> ] 1.109509 s [racon::Polisher::polish] generating consensus [=====> ] 1.341210 s [racon::Polisher::polish] generating consensus [======> ] 1.538309 s [racon::Polisher::polish] generating consensus [=======> ] 1.751048 s [racon::Polisher::polish] generating consensus [========> ] 1.827063 s [racon::Polisher::polish] generating consensus [=========> ] 2.419537 s [racon::Polisher::polish] generating consensus [==========> ] 2.735214 s [racon::Polisher::polish] generating consensus [===========> ] 2.998191 s [racon::Polisher::polish] generating consensus [============> ] 3.083699 s [racon::Polisher::polish] generating consensus [=============> ] 3.375609 s [racon::Polisher::polish] generating consensus [==============> ] 3.376813 s [racon::Polisher::polish] generating consensus [===============> ] 3.719642 s [racon::Polisher::polish] generating consensus [================> ] 3.723524 s [racon::Polisher::polish] generating consensus [=================> ] 4.384081 s [racon::Polisher::polish] generating consensus [==================> ] 4.607863 s [racon::Polisher::polish] generating consensus [===================>] 4.659678 s [racon::Polisher::polish] generating consensus [====================] 4.727893 s +[racon::Polisher::] total = 6.056022 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (6071 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull -[racon::Polisher::initialize] loaded target sequences 0.084896 s -[racon::Polisher::initialize] loaded sequences 0.087008 s -[racon::Polisher::initialize] loaded overlaps 0.020455 s -[racon::Polisher::initialize] aligning overlaps [=> ] 1.265449 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.897386 s [racon::Polisher::initialize] aligning overlaps [===> ] 2.437229 s [racon::Polisher::initialize] aligning overlaps [====> ] 3.173234 s [racon::Polisher::initialize] aligning overlaps [=====> ] 3.801235 s [racon::Polisher::initialize] aligning overlaps [======> ] 4.253969 s [racon::Polisher::initialize] aligning overlaps [=======> ] 4.885238 s [racon::Polisher::initialize] aligning overlaps [========> ] 5.665221 s [racon::Polisher::initialize] aligning overlaps [=========> ] 6.425221 s [racon::Polisher::initialize] aligning overlaps [==========> ] 7.141243 s [racon::Polisher::initialize] aligning overlaps [===========> ] 7.697231 s [racon::Polisher::initialize] aligning overlaps [============> ] 8.481235 s [racon::Polisher::initialize] aligning overlaps [=============> ] 9.237235 s [racon::Polisher::initialize] aligning overlaps [==============> ] 9.845291 s [racon::Polisher::initialize] aligning overlaps [===============> ] 10.773224 s [racon::Polisher::initialize] aligning overlaps [================> ] 11.541237 s [racon::Polisher::initialize] aligning overlaps [=================> ] 12.213227 s [racon::Polisher::initialize] aligning overlaps [==================> ] 12.977237 s [racon::Polisher::initialize] aligning overlaps [===================>] 13.801229 s [racon::Polisher::initialize] aligning overlaps [====================] 14.479864 s -[racon::Polisher::initialize] transformed data into windows 0.217157 s -[racon::Polisher::polish] generating consensus [=> ] 19.595179 s [racon::Polisher::polish] generating consensus [==> ] 32.764067 s [racon::Polisher::polish] generating consensus [===> ] 47.267282 s [racon::Polisher::polish] generating consensus [====> ] 60.283270 s [racon::Polisher::polish] generating consensus [=====> ] 74.255158 s [racon::Polisher::polish] generating consensus [======> ] 90.619173 s [racon::Polisher::polish] generating consensus [=======> ] 107.899169 s [racon::Polisher::polish] generating consensus [========> ] 120.159214 s [racon::Polisher::polish] generating consensus [=========> ] 135.467181 s [racon::Polisher::polish] generating consensus [==========> ] 154.967920 s [racon::Polisher::polish] generating consensus [===========> ] 170.383302 s [racon::Polisher::polish] generating consensus [============> ] 186.003272 s [racon::Polisher::polish] generating consensus [=============> ] 199.495195 s [racon::Polisher::polish] generating consensus [==============> ] 213.887211 s [racon::Polisher::polish] generating consensus [===============> ] 229.563208 s [racon::Polisher::polish] generating consensus [================> ] 238.419243 s [racon::Polisher::polish] generating consensus [=================> ] 254.339222 s [racon::Polisher::polish] generating consensus [==================> ] 270.267243 s [racon::Polisher::polish] generating consensus [===================>] 285.163167 s [racon::Polisher::polish] generating consensus [====================] 297.655659 s -[racon::Polisher::] total = 312.552700 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (312577 ms) +[racon::Polisher::initialize] loaded target sequences 0.078949 s +[racon::Polisher::initialize] loaded sequences 0.063500 s +[racon::Polisher::initialize] loaded overlaps 0.017919 s +[racon::Polisher::initialize] aligning overlaps [=> ] 1.689243 s [racon::Polisher::initialize] aligning overlaps [==> ] 2.681276 s [racon::Polisher::initialize] aligning overlaps [===> ] 3.692872 s [racon::Polisher::initialize] aligning overlaps [====> ] 4.943920 s [racon::Polisher::initialize] aligning overlaps [=====> ] 5.805177 s [racon::Polisher::initialize] aligning overlaps [======> ] 6.764815 s [racon::Polisher::initialize] aligning overlaps [=======> ] 7.642939 s [racon::Polisher::initialize] aligning overlaps [========> ] 9.049056 s [racon::Polisher::initialize] aligning overlaps [=========> ] 9.840795 s [racon::Polisher::initialize] aligning overlaps [==========> ] 10.384804 s [racon::Polisher::initialize] aligning overlaps [===========> ] 10.876807 s [racon::Polisher::initialize] aligning overlaps [============> ] 11.517066 s [racon::Polisher::initialize] aligning overlaps [=============> ] 12.505471 s [racon::Polisher::initialize] aligning overlaps [==============> ] 13.273529 s [racon::Polisher::initialize] aligning overlaps [===============> ] 14.097444 s [racon::Polisher::initialize] aligning overlaps [================> ] 14.901482 s [racon::Polisher::initialize] aligning overlaps [=================> ] 15.681442 s [racon::Polisher::initialize] aligning overlaps [==================> ] 16.474591 s [racon::Polisher::initialize] aligning overlaps [===================>] 17.017510 s [racon::Polisher::initialize] aligning overlaps [====================] 17.468012 s +[racon::Polisher::initialize] transformed data into windows 0.079067 s +[racon::Polisher::polish] generating consensus [=> ] 18.195687 s [racon::Polisher::polish] generating consensus [==> ] 31.812397 s [racon::Polisher::polish] generating consensus [===> ] 44.675800 s [racon::Polisher::polish] generating consensus [====> ] 57.152856 s [racon::Polisher::polish] generating consensus [=====> ] 70.591059 s [racon::Polisher::polish] generating consensus [======> ] 87.039872 s [racon::Polisher::polish] generating consensus [=======> ] 100.051442 s [racon::Polisher::polish] generating consensus [========> ] 110.231044 s [racon::Polisher::polish] generating consensus [=========> ] 121.695706 s [racon::Polisher::polish] generating consensus [==========> ] 133.391680 s [racon::Polisher::polish] generating consensus [===========> ] 143.467624 s [racon::Polisher::polish] generating consensus [============> ] 154.283040 s [racon::Polisher::polish] generating consensus [=============> ] 163.335056 s [racon::Polisher::polish] generating consensus [==============> ] 172.935094 s [racon::Polisher::polish] generating consensus [===============> ] 182.943053 s [racon::Polisher::polish] generating consensus [================> ] 188.731067 s [racon::Polisher::polish] generating consensus [=================> ] 199.179047 s [racon::Polisher::polish] generating consensus [==================> ] 209.375069 s [racon::Polisher::polish] generating consensus [===================>] 218.447040 s [racon::Polisher::polish] generating consensus [====================] 225.752615 s +[racon::Polisher::] total = 243.464787 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (243481 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull -[racon::Polisher::initialize] loaded target sequences 0.049629 s -[racon::Polisher::initialize] loaded sequences 0.049529 s -[racon::Polisher::initialize] loaded overlaps 0.020010 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.769018 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.273040 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.773637 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.445039 s [racon::Polisher::initialize] aligning overlaps [=====> ] 3.033047 s [racon::Polisher::initialize] aligning overlaps [======> ] 3.449028 s [racon::Polisher::initialize] aligning overlaps [=======> ] 4.005051 s [racon::Polisher::initialize] aligning overlaps [========> ] 4.721017 s [racon::Polisher::initialize] aligning overlaps [=========> ] 5.381016 s [racon::Polisher::initialize] aligning overlaps [==========> ] 6.045030 s [racon::Polisher::initialize] aligning overlaps [===========> ] 6.553016 s [racon::Polisher::initialize] aligning overlaps [============> ] 7.273016 s [racon::Polisher::initialize] aligning overlaps [=============> ] 8.005677 s [racon::Polisher::initialize] aligning overlaps [==============> ] 8.605686 s [racon::Polisher::initialize] aligning overlaps [===============> ] 9.609662 s [racon::Polisher::initialize] aligning overlaps [================> ] 10.369625 s [racon::Polisher::initialize] aligning overlaps [=================> ] 11.041021 s [racon::Polisher::initialize] aligning overlaps [==================> ] 11.761620 s [racon::Polisher::initialize] aligning overlaps [===================>] 12.589026 s [racon::Polisher::initialize] aligning overlaps [====================] 13.223935 s -[racon::Polisher::initialize] transformed data into windows 0.035758 s -[racon::Polisher::polish] generating consensus [=> ] 24.317162 s [racon::Polisher::polish] generating consensus [==> ] 43.285178 s [racon::Polisher::polish] generating consensus [===> ] 62.145178 s [racon::Polisher::polish] generating consensus [====> ] 76.301232 s [racon::Polisher::polish] generating consensus [=====> ] 93.793175 s [racon::Polisher::polish] generating consensus [======> ] 113.433189 s [racon::Polisher::polish] generating consensus [=======> ] 133.733194 s [racon::Polisher::polish] generating consensus [========> ] 148.405193 s [racon::Polisher::polish] generating consensus [=========> ] 167.293181 s [racon::Polisher::polish] generating consensus [==========> ] 189.429173 s [racon::Polisher::polish] generating consensus [===========> ] 207.369239 s [racon::Polisher::polish] generating consensus [============> ] 228.105235 s [racon::Polisher::polish] generating consensus [=============> ] 247.761174 s [racon::Polisher::polish] generating consensus [==============> ] 267.449187 s [racon::Polisher::polish] generating consensus [===============> ] 287.057180 s [racon::Polisher::polish] generating consensus [================> ] 297.509251 s [racon::Polisher::polish] generating consensus [=================> ] 322.541203 s [racon::Polisher::polish] generating consensus [==================> ] 345.621262 s [racon::Polisher::polish] generating consensus [===================>] 366.537205 s [racon::Polisher::polish] generating consensus [====================] 384.292013 s -[racon::Polisher::] total = 397.676058 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (397700 ms) +[racon::Polisher::initialize] loaded target sequences 0.028546 s +[racon::Polisher::initialize] loaded sequences 0.028391 s +[racon::Polisher::initialize] loaded overlaps 0.016593 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.707463 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.187473 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.663451 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.307488 s [racon::Polisher::initialize] aligning overlaps [=====> ] 2.859475 s [racon::Polisher::initialize] aligning overlaps [======> ] 3.251462 s [racon::Polisher::initialize] aligning overlaps [=======> ] 3.787450 s [racon::Polisher::initialize] aligning overlaps [========> ] 4.475464 s [racon::Polisher::initialize] aligning overlaps [=========> ] 5.107455 s [racon::Polisher::initialize] aligning overlaps [==========> ] 5.719455 s [racon::Polisher::initialize] aligning overlaps [===========> ] 6.187447 s [racon::Polisher::initialize] aligning overlaps [============> ] 6.875447 s [racon::Polisher::initialize] aligning overlaps [=============> ] 7.567447 s [racon::Polisher::initialize] aligning overlaps [==============> ] 8.135448 s [racon::Polisher::initialize] aligning overlaps [===============> ] 8.939448 s [racon::Polisher::initialize] aligning overlaps [================> ] 9.663445 s [racon::Polisher::initialize] aligning overlaps [=================> ] 10.299457 s [racon::Polisher::initialize] aligning overlaps [==================> ] 10.987447 s [racon::Polisher::initialize] aligning overlaps [===================>] 11.707468 s [racon::Polisher::initialize] aligning overlaps [====================] 12.139924 s +[racon::Polisher::initialize] transformed data into windows 0.025334 s +[racon::Polisher::polish] generating consensus [=> ] 16.015281 s [racon::Polisher::polish] generating consensus [==> ] 28.587268 s [racon::Polisher::polish] generating consensus [===> ] 41.195341 s [racon::Polisher::polish] generating consensus [====> ] 50.687108 s [racon::Polisher::polish] generating consensus [=====> ] 61.847050 s [racon::Polisher::polish] generating consensus [======> ] 74.391042 s [racon::Polisher::polish] generating consensus [=======> ] 87.935060 s [racon::Polisher::polish] generating consensus [========> ] 97.707069 s [racon::Polisher::polish] generating consensus [=========> ] 110.319051 s [racon::Polisher::polish] generating consensus [==========> ] 125.131057 s [racon::Polisher::polish] generating consensus [===========> ] 137.307105 s [racon::Polisher::polish] generating consensus [============> ] 151.051122 s [racon::Polisher::polish] generating consensus [=============> ] 164.195062 s [racon::Polisher::polish] generating consensus [==============> ] 177.015049 s [racon::Polisher::polish] generating consensus [===============> ] 190.147057 s [racon::Polisher::polish] generating consensus [================> ] 197.171126 s [racon::Polisher::polish] generating consensus [=================> ] 213.719054 s [racon::Polisher::polish] generating consensus [==================> ] 228.987115 s [racon::Polisher::polish] generating consensus [===================>] 242.807082 s [racon::Polisher::polish] generating consensus [====================] 254.436903 s +[racon::Polisher::] total = 266.681355 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (266696 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap -[racon::Polisher::initialize] loaded target sequences 0.085579 s -[racon::Polisher::initialize] loaded sequences 0.085089 s -[racon::Polisher::initialize] loaded overlaps 0.020431 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.778308 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.302299 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.802309 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.478302 s [racon::Polisher::initialize] aligning overlaps [=====> ] 3.066310 s [racon::Polisher::initialize] aligning overlaps [======> ] 3.482305 s [racon::Polisher::initialize] aligning overlaps [=======> ] 4.042313 s [racon::Polisher::initialize] aligning overlaps [========> ] 4.758321 s [racon::Polisher::initialize] aligning overlaps [=========> ] 5.422303 s [racon::Polisher::initialize] aligning overlaps [==========> ] 6.086296 s [racon::Polisher::initialize] aligning overlaps [===========> ] 6.598320 s [racon::Polisher::initialize] aligning overlaps [============> ] 7.322294 s [racon::Polisher::initialize] aligning overlaps [=============> ] 8.094296 s [racon::Polisher::initialize] aligning overlaps [==============> ] 8.790297 s [racon::Polisher::initialize] aligning overlaps [===============> ] 9.634293 s [racon::Polisher::initialize] aligning overlaps [================> ] 10.402282 s [racon::Polisher::initialize] aligning overlaps [=================> ] 11.046306 s [racon::Polisher::initialize] aligning overlaps [==================> ] 11.854286 s [racon::Polisher::initialize] aligning overlaps [===================>] 12.690298 s [racon::Polisher::initialize] aligning overlaps [====================] 13.262563 s -[racon::Polisher::initialize] transformed data into windows 0.218838 s -[racon::Polisher::polish] generating consensus [=> ] 17.644732 s [racon::Polisher::polish] generating consensus [==> ] 30.204709 s [racon::Polisher::polish] generating consensus [===> ] 43.928805 s [racon::Polisher::polish] generating consensus [====> ] 55.412112 s [racon::Polisher::polish] generating consensus [=====> ] 67.436073 s [racon::Polisher::polish] generating consensus [======> ] 81.792070 s [racon::Polisher::polish] generating consensus [=======> ] 96.508077 s [racon::Polisher::polish] generating consensus [========> ] 107.076073 s [racon::Polisher::polish] generating consensus [=========> ] 120.596073 s [racon::Polisher::polish] generating consensus [==========> ] 136.852080 s [racon::Polisher::polish] generating consensus [===========> ] 150.036147 s [racon::Polisher::polish] generating consensus [============> ] 165.420321 s [racon::Polisher::polish] generating consensus [=============> ] 178.596078 s [racon::Polisher::polish] generating consensus [==============> ] 192.412073 s [racon::Polisher::polish] generating consensus [===============> ] 207.596064 s [racon::Polisher::polish] generating consensus [================> ] 216.064116 s [racon::Polisher::polish] generating consensus [=================> ] 232.516844 s [racon::Polisher::polish] generating consensus [==================> ] 249.033756 s [racon::Polisher::polish] generating consensus [===================>] 264.932984 s [racon::Polisher::polish] generating consensus [====================] 277.030196 s -[racon::Polisher::] total = 290.711081 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (290737 ms) -[----------] 10 tests from RaconPolishingTest (1099943 ms total) +[racon::Polisher::initialize] loaded target sequences 0.060174 s +[racon::Polisher::initialize] loaded sequences 0.061274 s +[racon::Polisher::initialize] loaded overlaps 0.015963 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.714811 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.191427 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.658827 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.302814 s [racon::Polisher::initialize] aligning overlaps [=====> ] 2.862801 s [racon::Polisher::initialize] aligning overlaps [======> ] 3.254804 s [racon::Polisher::initialize] aligning overlaps [=======> ] 3.798800 s [racon::Polisher::initialize] aligning overlaps [========> ] 4.486803 s [racon::Polisher::initialize] aligning overlaps [=========> ] 5.102805 s [racon::Polisher::initialize] aligning overlaps [==========> ] 5.734809 s [racon::Polisher::initialize] aligning overlaps [===========> ] 6.222831 s [racon::Polisher::initialize] aligning overlaps [============> ] 6.922820 s [racon::Polisher::initialize] aligning overlaps [=============> ] 7.614823 s [racon::Polisher::initialize] aligning overlaps [==============> ] 8.166802 s [racon::Polisher::initialize] aligning overlaps [===============> ] 8.946802 s [racon::Polisher::initialize] aligning overlaps [================> ] 9.654805 s [racon::Polisher::initialize] aligning overlaps [=================> ] 10.274811 s [racon::Polisher::initialize] aligning overlaps [==================> ] 10.942802 s [racon::Polisher::initialize] aligning overlaps [===================>] 11.654814 s [racon::Polisher::initialize] aligning overlaps [====================] 12.177128 s +[racon::Polisher::initialize] transformed data into windows 0.072160 s +[racon::Polisher::polish] generating consensus [=> ] 11.630845 s [racon::Polisher::polish] generating consensus [==> ] 19.963433 s [racon::Polisher::polish] generating consensus [===> ] 29.459497 s [racon::Polisher::polish] generating consensus [====> ] 36.990879 s [racon::Polisher::polish] generating consensus [=====> ] 44.970835 s [racon::Polisher::polish] generating consensus [======> ] 54.498835 s [racon::Polisher::polish] generating consensus [=======> ] 64.238834 s [racon::Polisher::polish] generating consensus [========> ] 71.250850 s [racon::Polisher::polish] generating consensus [=========> ] 80.170827 s [racon::Polisher::polish] generating consensus [==========> ] 90.818825 s [racon::Polisher::polish] generating consensus [===========> ] 99.442875 s [racon::Polisher::polish] generating consensus [============> ] 109.338885 s [racon::Polisher::polish] generating consensus [=============> ] 118.002859 s [racon::Polisher::polish] generating consensus [==============> ] 127.130828 s [racon::Polisher::polish] generating consensus [===============> ] 137.134841 s [racon::Polisher::polish] generating consensus [================> ] 142.594865 s [racon::Polisher::polish] generating consensus [=================> ] 153.502825 s [racon::Polisher::polish] generating consensus [==================> ] 163.750867 s [racon::Polisher::polish] generating consensus [===================>] 173.547459 s [racon::Polisher::polish] generating consensus [====================] 181.280385 s +[racon::Polisher::] total = 193.672610 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (193686 ms) +[----------] 10 tests from RaconPolishingTest (801964 ms total) [----------] Global test environment tear-down -[==========] 15 tests from 2 test suites ran. (1099965 ms total) +[==========] 15 tests from 2 test suites ran. (801982 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake - cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -784,12 +820,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/18546/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/18546/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3234 and its subdirectories -I: Current time: Sun Jan 19 14:57:25 -12 2025 -I: pbuilder-time-stamp: 1737341845 +I: removing directory /srv/workspace/pbuilder/18546 and its subdirectories +I: Current time: Mon Jan 20 17:13:06 +14 2025 +I: pbuilder-time-stamp: 1737342786