Diff of the two buildlogs: -- --- b1/build.log 2025-01-13 19:51:28.083083624 +0000 +++ b2/build.log 2025-01-13 19:54:21.079164558 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Jan 13 07:40:47 -12 2025 -I: pbuilder-time-stamp: 1736797247 +I: Current time: Tue Jan 14 09:51:37 +14 2025 +I: pbuilder-time-stamp: 1736797897 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying drop-git-in-gemspec.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/4549/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/10429/tmp/hooks/D01_modify_environment starting +debug: Running on virt32b. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 13 19:51 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/10429/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/10429/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='f98ddbc66f4c48b7a714a819ba2f23e6' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='4549' - PS1='# ' - PS2='> ' + INVOCATION_ID=cef6b6e557a24d668f196db9f6be067c + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=10429 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.SQXOAACv/pbuilderrc_WlhU --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.SQXOAACv/b1 --logfile b1/build.log ruby-crb-blast_0.6.9-5.dsc' - SUDO_GID='114' - SUDO_UID='109' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.SQXOAACv/pbuilderrc_oSMm --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.SQXOAACv/b2 --logfile b2/build.log ruby-crb-blast_0.6.9-5.dsc' + SUDO_GID=112 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux ff64a 6.1.0-29-arm64 #1 SMP Debian 6.1.123-1 (2025-01-02) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-29-armmp-lpae #1 SMP Debian 6.1.123-1 (2025-01-02) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/4549/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/10429/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -286,7 +318,7 @@ Get: 155 http://deb.debian.org/debian unstable/main armhf ruby-shoulda all 4.0.0-3 [6352 B] Get: 156 http://deb.debian.org/debian unstable/main armhf ruby-threach all 0.2.0-2 [5320 B] Get: 157 http://deb.debian.org/debian unstable/main armhf ruby-trollop all 2.0-2.1 [17.0 kB] -Fetched 71.9 MB in 4s (16.5 MB/s) +Fetched 71.9 MB in 1s (48.3 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19562 files and directories currently installed.) @@ -808,8 +840,8 @@ Setting up tzdata (2024b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Jan 13 19:43:25 UTC 2025. -Universal Time is now: Mon Jan 13 19:43:25 UTC 2025. +Local time is now: Mon Jan 13 19:52:40 UTC 2025. +Universal Time is now: Mon Jan 13 19:52:40 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -949,7 +981,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ruby-crb-blast-0.6.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ruby-crb-blast_0.6.9-5_source.changes +I: user script /srv/workspace/pbuilder/10429/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/10429/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ruby-crb-blast-0.6.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ruby-crb-blast_0.6.9-5_source.changes dpkg-buildpackage: info: source package ruby-crb-blast dpkg-buildpackage: info: source version 0.6.9-5 dpkg-buildpackage: info: source distribution unstable @@ -1028,38 +1064,38 @@ Loaded suite /usr/share/rubygems-integration/all/gems/rake-13.2.1/lib/rake/rake_test_loader Started Test2CRBBlast: - test: crb-blast should add secondary hits. : .: (8.733144) - test: crb-blast should break input file into no more pieces than there are sequences. : .: (10.261113) - test: crb-blast should break input file into pieces. :.: (10.103644) - test: crb-blast should find reciprocals. : .: (8.477144) - test: crb-blast should get non reciprocal hits. : .: (8.169284) - test: crb-blast should load output should check if the databases exist. : .: (8.750367) - test: crb-blast should run blast should check if the databases exist yet. : .: (9.396815) - test: crb-blast should setup2 should run ok. : .: (7.457142) + test: crb-blast should add secondary hits. : .: (1.459621) + test: crb-blast should break input file into no more pieces than there are sequences. : .: (1.406051) + test: crb-blast should break input file into pieces. :.: (1.407996) + test: crb-blast should find reciprocals. : .: (1.396324) + test: crb-blast should get non reciprocal hits. : .: (1.399364) + test: crb-blast should load output should check if the databases exist. : .: (1.398107) + test: crb-blast should run blast should check if the databases exist yet. : .: (1.404744) + test: crb-blast should setup2 should run ok. : .: (1.404672) Test3CRBBlast: - test: crb-blast should raise error when files don't exist. : .: (0.015811) - test: crb-blast should run. : .: (8.411230) - test: crb-blast should work for query sequences with pipes. : .: (6.832038) + test: crb-blast should raise error when files don't exist. : .: (0.003255) + test: crb-blast should run. : .: (1.615565) + test: crb-blast should work for query sequences with pipes. : .: (1.207122) TestBinary: - test: crb-blast should run binary. : .: (2.377479) + test: crb-blast should run binary. : .: (0.415625) TestCRBBlast: - test: crb-blast should check if contig has reciprocal hit. : .: (8.927051) - test: crb-blast should determine that the target is a protein sequence. : .: (9.172364) - test: crb-blast should find reciprocals. : .: (8.927295) - test: crb-blast should get number of reciprocals. : .: (8.356965) - test: crb-blast should get query results. : .: (7.946542) - test: crb-blast should load outputs. : .: (8.220037) - test: crb-blast should not find fake scaffold name. : .: (8.499402) - test: crb-blast should output all reciprocal hits. : .: (7.733942) - test: crb-blast should run blast. : .: (7.694729) - test: crb-blast should setup should run ok. : .: (8.115896) + test: crb-blast should check if contig has reciprocal hit. : .: (1.550486) + test: crb-blast should determine that the target is a protein sequence. : .: (1.433907) + test: crb-blast should find reciprocals. : .: (1.435085) + test: crb-blast should get number of reciprocals. : .: (1.433804) + test: crb-blast should get query results. : .: (1.434071) + test: crb-blast should load outputs. : .: (1.427436) + test: crb-blast should not find fake scaffold name. : .: (1.430773) + test: crb-blast should output all reciprocal hits. : .: (1.432566) + test: crb-blast should run blast. : .: (1.429606) + test: crb-blast should setup should run ok. : .: (1.430832) -Finished in 172.624242612 seconds. +Finished in 28.96682361 seconds. ------------------------------------------------------------------------------- 22 tests, 42 assertions, 0 failures, 0 errors, 0 pendings, 0 omissions, 0 notifications 100% passed ------------------------------------------------------------------------------- -0.13 tests/s, 0.24 assertions/s +0.76 tests/s, 1.45 assertions/s /usr/bin/ruby3.3 /usr/bin/gem2deb-test-runner ┌──────────────────────────────────────────────────────────────────────────────┐ @@ -1085,38 +1121,38 @@ Loaded suite /usr/share/rubygems-integration/all/gems/rake-13.2.1/lib/rake/rake_test_loader Started Test2CRBBlast: - test: crb-blast should add secondary hits. : .: (7.316616) - test: crb-blast should break input file into no more pieces than there are sequences. : .: (7.823733) - test: crb-blast should break input file into pieces. :.: (8.121411) - test: crb-blast should find reciprocals. : .: (7.158938) - test: crb-blast should get non reciprocal hits. : .: (6.868731) - test: crb-blast should load output should check if the databases exist. : .: (8.244780) - test: crb-blast should run blast should check if the databases exist yet. : .: (8.675034) - test: crb-blast should setup2 should run ok. : .: (7.599651) + test: crb-blast should add secondary hits. : .: (1.385845) + test: crb-blast should break input file into no more pieces than there are sequences. : .: (1.346621) + test: crb-blast should break input file into pieces. :.: (1.364301) + test: crb-blast should find reciprocals. : .: (1.361279) + test: crb-blast should get non reciprocal hits. : .: (1.342931) + test: crb-blast should load output should check if the databases exist. : .: (1.343801) + test: crb-blast should run blast should check if the databases exist yet. : .: (1.343886) + test: crb-blast should setup2 should run ok. : .: (1.364181) Test3CRBBlast: - test: crb-blast should raise error when files don't exist. : .: (0.031590) - test: crb-blast should run. : .: (8.589857) - test: crb-blast should work for query sequences with pipes. : .: (5.727970) + test: crb-blast should raise error when files don't exist. : .: (0.004626) + test: crb-blast should run. : .: (1.565223) + test: crb-blast should work for query sequences with pipes. : .: (1.182065) TestBinary: - test: crb-blast should run binary. : .: (2.753123) + test: crb-blast should run binary. : .: (0.412775) TestCRBBlast: - test: crb-blast should check if contig has reciprocal hit. : .: (7.313335) - test: crb-blast should determine that the target is a protein sequence. : .: (8.008208) - test: crb-blast should find reciprocals. : .: (8.883527) - test: crb-blast should get number of reciprocals. : .: (8.027312) - test: crb-blast should get query results. : .: (7.609353) - test: crb-blast should load outputs. : .: (7.411595) - test: crb-blast should not find fake scaffold name. : .: (9.260082) - test: crb-blast should output all reciprocal hits. : .: (7.926416) - test: crb-blast should run blast. : .: (9.154293) - test: crb-blast should setup should run ok. : .: (9.609193) + test: crb-blast should check if contig has reciprocal hit. : .: (1.405166) + test: crb-blast should determine that the target is a protein sequence. : .: (1.407561) + test: crb-blast should find reciprocals. : .: (1.407878) + test: crb-blast should get number of reciprocals. : .: (1.403318) + test: crb-blast should get query results. : .: (1.401957) + test: crb-blast should load outputs. : .: (1.403099) + test: crb-blast should not find fake scaffold name. : .: (1.421134) + test: crb-blast should output all reciprocal hits. : .: (1.394175) + test: crb-blast should run blast. : .: (1.401615) + test: crb-blast should setup should run ok. : .: (1.415505) -Finished in 162.16221558 seconds. +Finished in 28.094715331 seconds. ------------------------------------------------------------------------------- 22 tests, 42 assertions, 0 failures, 0 errors, 0 pendings, 0 omissions, 0 notifications 100% passed ------------------------------------------------------------------------------- -0.14 tests/s, 0.26 assertions/s +0.78 tests/s, 1.49 assertions/s ┌──────────────────────────────────────────────────────────────────────────────┐ │ dh_ruby --install finished │ @@ -1147,12 +1183,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/10429/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/10429/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/4549 and its subdirectories -I: Current time: Mon Jan 13 07:51:23 -12 2025 -I: pbuilder-time-stamp: 1736797883 +I: removing directory /srv/workspace/pbuilder/10429 and its subdirectories +I: Current time: Tue Jan 14 09:54:16 +14 2025 +I: pbuilder-time-stamp: 1736798056