Diff of the two buildlogs: -- --- b1/build.log 2024-11-06 11:55:48.402355512 +0000 +++ b2/build.log 2024-11-06 12:11:35.408652305 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Nov 5 23:47:23 -12 2024 -I: pbuilder-time-stamp: 1730893643 +I: Current time: Thu Nov 7 01:56:07 +14 2024 +I: pbuilder-time-stamp: 1730894167 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: unpacking twopaco_1.0.0+dfsg-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/6685/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1581/tmp/hooks/D01_modify_environment starting +debug: Running on virt64a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 6 11:56 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1581/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1581/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='ec47cf5bfd544e23a978cfd295e101e8' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='6685' - PS1='# ' - PS2='> ' + INVOCATION_ID=f0655d14572c4e5d9be911be325bab45 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1581 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.FJSLxsi6/pbuilderrc_dyYW --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.FJSLxsi6/b1 --logfile b1/build.log twopaco_1.0.0+dfsg-1.dsc' - SUDO_GID='110' - SUDO_UID='103' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.FJSLxsi6/pbuilderrc_H8Qc --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.FJSLxsi6/b2 --logfile b2/build.log twopaco_1.0.0+dfsg-1.dsc' + SUDO_GID=114 + SUDO_UID=108 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt32z 6.1.0-26-armmp-lpae #1 SMP Debian 6.1.112-1 (2024-09-30) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-26-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/6685/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/1581/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -172,7 +204,7 @@ Get: 57 http://deb.debian.org/debian unstable/main armhf libtbb12 armhf 2021.12.0-1 [74.1 kB] Get: 58 http://deb.debian.org/debian unstable/main armhf libtbb-dev armhf 2021.12.0-1 [193 kB] Get: 59 http://deb.debian.org/debian unstable/main armhf libtclap-dev armhf 1.2.5-1+b1 [3359 kB] -Fetched 33.9 MB in 1s (49.3 MB/s) +Fetched 33.9 MB in 2s (20.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19688 files and directories currently installed.) @@ -423,7 +455,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/twopaco-1.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../twopaco_1.0.0+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/1581/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1581/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/twopaco-1.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../twopaco_1.0.0+dfsg-1_source.changes dpkg-buildpackage: info: source package twopaco dpkg-buildpackage: info: source version 1.0.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -453,8 +489,8 @@ -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done --- Configuring done (1.7s) --- Generating done (0.0s) +-- Configuring done (3.6s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -470,7 +506,7 @@ -- Build files have been written to: /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf dh_auto_build -O--sourcedir=src - cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/twopaco-1.0.0+dfsg/src -B/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks @@ -490,14 +526,18 @@ make[3]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf' [ 7%] Building CXX object graphdump/CMakeFiles/graphdump.dir/graphdump.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphdump && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/graphdump.cpp.o -MF CMakeFiles/graphdump.dir/graphdump.cpp.o.d -o CMakeFiles/graphdump.dir/graphdump.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp -[ 14%] Building CXX object graphdump/CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o -cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphdump && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o -MF CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o.d -o CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/dnachar.cpp -[ 21%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o +[ 14%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o -MF CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/dnachar.cpp +[ 21%] Building CXX object graphdump/CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o +cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphdump && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o -MF CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o.d -o CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/dnachar.cpp [ 28%] Building CXX object graphdump/CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphdump && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -MF CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o.d -o CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/streamfastaparser.cpp [ 35%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/constructor.cpp.o cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/constructor.cpp.o -MF CMakeFiles/twopaco.dir/constructor.cpp.o.d -o CMakeFiles/twopaco.dir/constructor.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/constructor.cpp +[ 42%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o +cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o -MF CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o.d -o CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/concurrentbitvector.cpp +[ 50%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/compressedstring.cpp.o +cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/compressedstring.cpp.o -MF CMakeFiles/twopaco.dir/compressedstring.cpp.o.d -o CMakeFiles/twopaco.dir/compressedstring.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/compressedstring.cpp /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp: In function ‘void GenerateFastaOutput(const std::string&, const std::vector >&, size_t)’: /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:519:32: warning: unsigned conversion from ‘int64_t’ {aka ‘long long int’} to ‘std::vector::size_type’ {aka ‘unsigned int’} changes value from ‘34359738368’ to ‘0’ [-Woverflow] 519 | std::vector seen(MAX_SEGMENT_NUMBER, 0); @@ -516,14 +556,16 @@ /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:401:32: warning: unsigned conversion from ‘int64_t’ {aka ‘long long int’} to ‘std::vector::size_type’ {aka ‘unsigned int’} changes value from ‘34359738368’ to ‘0’ [-Woverflow] 401 | std::vector seen(MAX_SEGMENT_NUMBER, 0); | ^~~~~~~~~~~~~~~~~~ -[ 42%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o -cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o -MF CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o.d -o CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/concurrentbitvector.cpp +[ 57%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o +cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -MF CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/streamfastaparser.cpp +[ 64%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o +cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o -MF CMakeFiles/twopaco.dir/test.cpp.o.d -o CMakeFiles/twopaco.dir/test.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/test.cpp /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/constructor.cpp: In function ‘int main(int, char**)’: /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/constructor.cpp:112:25: warning: conversion from ‘long long unsigned int’ to ‘unsigned int’ changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 112 | UINT64_MAX, | ^~~~~~~~~~ -[ 50%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/compressedstring.cpp.o -cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/compressedstring.cpp.o -MF CMakeFiles/twopaco.dir/compressedstring.cpp.o.d -o CMakeFiles/twopaco.dir/compressedstring.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/compressedstring.cpp +[ 71%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o +cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -MF CMakeFiles/twopaco.dir/vertexenumerator.cpp.o.d -o CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/vertexenumerator.cpp In file included from /usr/include/c++/14/algorithm:61, from /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:11: /usr/include/c++/14/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: @@ -538,16 +580,14 @@ /usr/include/c++/14/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 -[ 57%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -MF CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/streamfastaparser.cpp -[ 64%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o -cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o -MF CMakeFiles/twopaco.dir/test.cpp.o.d -o CMakeFiles/twopaco.dir/test.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/test.cpp In file included from /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:15: /usr/include/oneapi/tbb/parallel_sort.h: In function ‘void tbb::detail::d1::parallel_quick_sort(RandomAccessIterator, RandomAccessIterator, const Compare&) [with RandomAccessIterator = __gnu_cxx::__normal_iterator >; Compare = bool(const EqClass&, const EqClass&)]’: /usr/include/oneapi/tbb/parallel_sort.h:186:6: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 186 | void parallel_quick_sort( RandomAccessIterator begin, RandomAccessIterator end, const Compare& comp ) { | ^~~~~~~~~~~~~~~~~~~ /usr/include/oneapi/tbb/parallel_sort.h:186:6: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 +[ 78%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o +cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -MF CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/spooky/SpookyV2.cpp /usr/include/c++/14/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1750 | __unguarded_linear_insert(_RandomAccessIterator __last, @@ -602,6 +642,8 @@ /usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 85%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/common.cpp.o +cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/common.cpp.o -MF CMakeFiles/twopaco.dir/common.cpp.o.d -o CMakeFiles/twopaco.dir/common.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/common.cpp In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(const TwoPaCo::JunctionPosition&, const TwoPaCo::JunctionPosition&)]’ at /usr/include/c++/14/bits/stl_algo.h:4804:18, inlined from ‘void GenerateGroupOutupt(const std::string&)’ at /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:132:11: @@ -669,8 +711,6 @@ /usr/include/oneapi/tbb/parallel_sort.h:244:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 244 | parallel_quick_sort(begin, end, comp); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ -[ 71%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -MF CMakeFiles/twopaco.dir/vertexenumerator.cpp.o.d -o CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/vertexenumerator.cpp In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(const EqClass&, const EqClass&)]’ at /usr/include/c++/14/bits/stl_algo.h:4804:18, inlined from ‘void tbb::detail::d1::quick_sort_body::operator()(const tbb::detail::d1::quick_sort_range&) const [with RandomAccessIterator = __gnu_cxx::__normal_iterator >; Compare = bool(const EqClass&, const EqClass&)]’ at /usr/include/oneapi/tbb/parallel_sort.h:170:18, @@ -723,10 +763,6 @@ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 78%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -MF CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/spooky/SpookyV2.cpp -[ 85%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/common.cpp.o -cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++ -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/common.cpp.o -MF CMakeFiles/twopaco.dir/common.cpp.o.d -o CMakeFiles/twopaco.dir/common.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/common.cpp [ 92%] Linking CXX executable graphdump cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphdump && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphdump.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro CMakeFiles/graphdump.dir/graphdump.cpp.o CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -o graphdump -ltbb -lpthread @@ -2461,344 +2497,381 @@ debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg' obj-*/graphconstructor/twopaco --test -f 34 example/example.fa -ERROR at chr 0 pos 56, 1 != 0 -ERROR at chr 0 pos 441, 1 != 0 -ERROR at chr 0 pos 591, 1 != 0 -ERROR at chr 0 pos 607, 1 != 0 -ERROR at chr 0 pos 652, 1 != 0 -ERROR at chr 0 pos 699, 1 != 0 -ERROR at chr 0 pos 739, 1 != 0 -ERROR at chr 0 pos 1197, 1 != 0 -ERROR at chr 0 pos 1698, 1 != 0 -ERROR at chr 0 pos 1702, 1 != 0 -ERROR at chr 0 pos 2162, 1 != 0 -ERROR at chr 0 pos 2412, 1 != 0 -ERROR at chr 0 pos 2442, 1 != 0 -ERROR at chr 0 pos 2539, 1 != 0 -ERROR at chr 0 pos 2664, 1 != 0 -ERROR at chr 0 pos 3007, 1 != 0 -ERROR at chr 0 pos 3080, 1 != 0 -ERROR at chr 0 pos 3125, 1 != 0 -ERROR at chr 0 pos 3440, 1 != 0 -ERROR at chr 0 pos 3472, 1 != 0 -ERROR at chr 0 pos 3723, 1 != 0 -ERROR at chr 0 pos 3745, 1 != 0 -ERROR at chr 0 pos 3947, 1 != 0 +ERROR at chr 0 pos 21, 1 != 0 +ERROR at chr 0 pos 121, 1 != 0 +ERROR at chr 0 pos 189, 1 != 0 +ERROR at chr 0 pos 795, 1 != 0 +ERROR at chr 0 pos 867, 1 != 0 +ERROR at chr 0 pos 897, 1 != 0 +ERROR at chr 0 pos 956, 1 != 0 +ERROR at chr 0 pos 985, 1 != 0 +ERROR at chr 0 pos 1151, 1 != 0 +ERROR at chr 0 pos 1153, 1 != 0 +ERROR at chr 0 pos 1551, 1 != 0 +ERROR at chr 0 pos 1752, 1 != 0 +ERROR at chr 0 pos 1922, 1 != 0 +ERROR at chr 0 pos 2051, 1 != 0 +ERROR at chr 0 pos 2206, 1 != 0 +ERROR at chr 0 pos 2388, 1 != 0 +ERROR at chr 0 pos 2552, 1 != 0 +ERROR at chr 0 pos 2573, 1 != 0 +ERROR at chr 0 pos 2757, 1 != 0 +ERROR at chr 0 pos 2768, 1 != 0 +ERROR at chr 0 pos 2782, 1 != 0 +ERROR at chr 0 pos 2883, 1 != 0 +ERROR at chr 0 pos 3221, 1 != 0 +ERROR at chr 0 pos 3353, 1 != 0 +ERROR at chr 0 pos 3443, 1 != 0 +ERROR at chr 0 pos 3533, 1 != 0 +ERROR at chr 0 pos 3616, 1 != 0 +ERROR at chr 0 pos 3782, 1 != 0 ERROR at chr 0 pos 4007, 1 != 0 -ERROR at chr 0 pos 4408, 1 != 0 +ERROR at chr 0 pos 4169, 1 != 0 +ERROR at chr 0 pos 4236, 1 != 0 ERROR at chr 0 pos 4448, 1 != 0 -ERROR at chr 0 pos 4525, 1 != 0 -ERROR at chr 0 pos 4861, 1 != 0 -ERROR at chr 0 pos 5073, 1 != 0 -ERROR at chr 0 pos 5209, 1 != 0 -ERROR at chr 0 pos 5588, 1 != 0 -ERROR at chr 0 pos 5774, 1 != 0 -ERROR at chr 0 pos 5867, 1 != 0 -ERROR at chr 0 pos 5930, 1 != 0 -ERROR at chr 0 pos 6108, 1 != 0 -ERROR at chr 0 pos 6366, 1 != 0 -ERROR at chr 0 pos 6442, 1 != 0 -ERROR at chr 0 pos 6738, 1 != 0 -ERROR at chr 0 pos 7159, 1 != 0 -ERROR at chr 0 pos 7222, 1 != 0 -ERROR at chr 0 pos 7223, 1 != 0 -ERROR at chr 0 pos 7256, 1 != 0 -ERROR at chr 0 pos 7697, 1 != 0 -ERROR at chr 0 pos 7877, 1 != 0 -ERROR at chr 0 pos 7957, 1 != 0 -ERROR at chr 0 pos 8172, 1 != 0 -ERROR at chr 0 pos 8328, 1 != 0 -ERROR at chr 0 pos 8381, 1 != 0 -ERROR at chr 0 pos 8609, 1 != 0 -ERROR at chr 0 pos 8652, 1 != 0 -ERROR at chr 0 pos 8767, 1 != 0 -ERROR at chr 1 pos 57, 1 != 0 -ERROR at chr 1 pos 321, 1 != 0 -ERROR at chr 1 pos 439, 1 != 0 -ERROR at chr 1 pos 589, 1 != 0 -ERROR at chr 1 pos 606, 1 != 0 -ERROR at chr 1 pos 620, 1 != 0 -ERROR at chr 1 pos 650, 1 != 0 -ERROR at chr 1 pos 697, 1 != 0 -ERROR at chr 1 pos 734, 1 != 0 -ERROR at chr 1 pos 1264, 1 != 0 -ERROR at chr 1 pos 1343, 1 != 0 -ERROR at chr 1 pos 1556, 1 != 0 -ERROR at chr 1 pos 1686, 1 != 0 -ERROR at chr 1 pos 1908, 1 != 0 -ERROR at chr 1 pos 2155, 1 != 0 -ERROR at chr 1 pos 2439, 1 != 0 -ERROR at chr 1 pos 2538, 1 != 0 -ERROR at chr 1 pos 2666, 1 != 0 -ERROR at chr 1 pos 2784, 1 != 0 -ERROR at chr 1 pos 2974, 1 != 0 -ERROR at chr 1 pos 3033, 1 != 0 -ERROR at chr 1 pos 3086, 1 != 0 -ERROR at chr 1 pos 3131, 1 != 0 -ERROR at chr 1 pos 3329, 1 != 0 -ERROR at chr 1 pos 3438, 1 != 0 -ERROR at chr 1 pos 3452, 1 != 0 -ERROR at chr 1 pos 3731, 1 != 0 -ERROR at chr 1 pos 3955, 1 != 0 -ERROR at chr 1 pos 4017, 1 != 0 -ERROR at chr 1 pos 4454, 1 != 0 -ERROR at chr 1 pos 4530, 1 != 0 -ERROR at chr 1 pos 4583, 1 != 0 -ERROR at chr 1 pos 4865, 1 != 0 -ERROR at chr 1 pos 5074, 1 != 0 -ERROR at chr 1 pos 5590, 1 != 0 -ERROR at chr 1 pos 5774, 1 != 0 -ERROR at chr 1 pos 5856, 1 != 0 -ERROR at chr 1 pos 5868, 1 != 0 -ERROR at chr 1 pos 5931, 1 != 0 -ERROR at chr 1 pos 6108, 1 != 0 -ERROR at chr 1 pos 6360, 1 != 0 -ERROR at chr 1 pos 6435, 1 != 0 -ERROR at chr 1 pos 6732, 1 != 0 -ERROR at chr 1 pos 7048, 1 != 0 -ERROR at chr 1 pos 7140, 1 != 0 -ERROR at chr 1 pos 7157, 1 != 0 -ERROR at chr 1 pos 7220, 1 != 0 -ERROR at chr 1 pos 7221, 1 != 0 -ERROR at chr 1 pos 7253, 1 != 0 -ERROR at chr 1 pos 7345, 1 != 0 -ERROR at chr 1 pos 7441, 1 != 0 -ERROR at chr 1 pos 7455, 1 != 0 -ERROR at chr 1 pos 7463, 1 != 0 -ERROR at chr 1 pos 7691, 1 != 0 -ERROR at chr 1 pos 7777, 1 != 0 -ERROR at chr 1 pos 7779, 1 != 0 -ERROR at chr 1 pos 7873, 1 != 0 -ERROR at chr 1 pos 7954, 1 != 0 -ERROR at chr 1 pos 8314, 1 != 0 -ERROR at chr 1 pos 8333, 1 != 0 -ERROR at chr 1 pos 8388, 1 != 0 -ERROR at chr 1 pos 8619, 1 != 0 -ERROR at chr 1 pos 8660, 1 != 0 -ERROR at chr 2 pos 56, 1 != 0 -ERROR at chr 2 pos 439, 1 != 0 -ERROR at chr 2 pos 464, 1 != 0 -ERROR at chr 2 pos 590, 1 != 0 -ERROR at chr 2 pos 653, 1 != 0 -ERROR at chr 2 pos 743, 1 != 0 -ERROR at chr 2 pos 1153, 1 != 0 -ERROR at chr 2 pos 1201, 1 != 0 -ERROR at chr 2 pos 1709, 1 != 0 -ERROR at chr 2 pos 2170, 1 != 0 -ERROR at chr 2 pos 2324, 1 != 0 -ERROR at chr 2 pos 2452, 1 != 0 -ERROR at chr 2 pos 2548, 1 != 0 -ERROR at chr 2 pos 2851, 1 != 0 -ERROR at chr 2 pos 3009, 1 != 0 -ERROR at chr 2 pos 3060, 1 != 0 -ERROR at chr 2 pos 3087, 1 != 0 -ERROR at chr 2 pos 3472, 1 != 0 -ERROR at chr 2 pos 3723, 1 != 0 -ERROR at chr 2 pos 3745, 1 != 0 -ERROR at chr 2 pos 3760, 1 != 0 -ERROR at chr 2 pos 4011, 1 != 0 -ERROR at chr 2 pos 4128, 1 != 0 -ERROR at chr 2 pos 4419, 1 != 0 -ERROR at chr 2 pos 4460, 1 != 0 -ERROR at chr 2 pos 4537, 1 != 0 -ERROR at chr 2 pos 4874, 1 != 0 -ERROR at chr 2 pos 4991, 1 != 0 -ERROR at chr 2 pos 5090, 1 != 0 -ERROR at chr 2 pos 5199, 1 != 0 -ERROR at chr 2 pos 5226, 1 != 0 -ERROR at chr 2 pos 5376, 1 != 0 -ERROR at chr 2 pos 5540, 1 != 0 -ERROR at chr 2 pos 5610, 1 != 0 -ERROR at chr 2 pos 5799, 1 != 0 -ERROR at chr 2 pos 5890, 1 != 0 -ERROR at chr 2 pos 5952, 1 != 0 -ERROR at chr 2 pos 6131, 1 != 0 -ERROR at chr 2 pos 6391, 1 != 0 -ERROR at chr 2 pos 6466, 1 != 0 -ERROR at chr 2 pos 6761, 1 != 0 -ERROR at chr 2 pos 6783, 1 != 0 -ERROR at chr 2 pos 7176, 1 != 0 -ERROR at chr 2 pos 7238, 1 != 0 -ERROR at chr 2 pos 7239, 1 != 0 -ERROR at chr 2 pos 7273, 1 != 0 -ERROR at chr 2 pos 7427, 1 != 0 -ERROR at chr 2 pos 7712, 1 != 0 -ERROR at chr 2 pos 7972, 1 != 0 -ERROR at chr 2 pos 8109, 1 != 0 -ERROR at chr 2 pos 8621, 1 != 0 -ERROR at chr 2 pos 8781, 1 != 0 -ERROR at chr 2 pos 8936, 1 != 0 -ERROR at chr 3 pos 56, 1 != 0 -ERROR at chr 3 pos 316, 1 != 0 -ERROR at chr 3 pos 320, 1 != 0 -ERROR at chr 3 pos 439, 1 != 0 -ERROR at chr 3 pos 605, 1 != 0 -ERROR at chr 3 pos 650, 1 != 0 -ERROR at chr 3 pos 697, 1 != 0 -ERROR at chr 3 pos 738, 1 != 0 -ERROR at chr 3 pos 1073, 1 != 0 -ERROR at chr 3 pos 1203, 1 != 0 -ERROR at chr 3 pos 1701, 1 != 0 -ERROR at chr 3 pos 1812, 1 != 0 -ERROR at chr 3 pos 2414, 1 != 0 -ERROR at chr 3 pos 2443, 1 != 0 -ERROR at chr 3 pos 2538, 1 != 0 -ERROR at chr 3 pos 2555, 1 != 0 -ERROR at chr 3 pos 2663, 1 != 0 -ERROR at chr 3 pos 2871, 1 != 0 -ERROR at chr 3 pos 3008, 1 != 0 -ERROR at chr 3 pos 3015, 1 != 0 -ERROR at chr 3 pos 3078, 1 != 0 -ERROR at chr 3 pos 3122, 1 != 0 -ERROR at chr 3 pos 3436, 1 != 0 -ERROR at chr 3 pos 3467, 1 != 0 -ERROR at chr 3 pos 3522, 1 != 0 -ERROR at chr 3 pos 3688, 1 != 0 -ERROR at chr 3 pos 3940, 1 != 0 -ERROR at chr 3 pos 4227, 1 != 0 -ERROR at chr 3 pos 4345, 1 != 0 -ERROR at chr 3 pos 4396, 1 != 0 -ERROR at chr 3 pos 4440, 1 != 0 -ERROR at chr 3 pos 4513, 1 != 0 -ERROR at chr 3 pos 4989, 1 != 0 -ERROR at chr 3 pos 5059, 1 != 0 -ERROR at chr 3 pos 5408, 1 != 0 -ERROR at chr 3 pos 5569, 1 != 0 -ERROR at chr 3 pos 5735, 1 != 0 -ERROR at chr 3 pos 5737, 1 != 0 -ERROR at chr 3 pos 5842, 1 != 0 -ERROR at chr 3 pos 6089, 1 != 0 -ERROR at chr 3 pos 6343, 1 != 0 -ERROR at chr 3 pos 6383, 1 != 0 -ERROR at chr 3 pos 6421, 1 != 0 -ERROR at chr 3 pos 6732, 1 != 0 -ERROR at chr 3 pos 6828, 1 != 0 -ERROR at chr 3 pos 6883, 1 != 0 -ERROR at chr 3 pos 7190, 1 != 0 -ERROR at chr 3 pos 7191, 1 != 0 -ERROR at chr 3 pos 7223, 1 != 0 -ERROR at chr 3 pos 7366, 1 != 0 -ERROR at chr 3 pos 7655, 1 != 0 -ERROR at chr 3 pos 7748, 1 != 0 -ERROR at chr 3 pos 7800, 1 != 0 -ERROR at chr 3 pos 7812, 1 != 0 -ERROR at chr 3 pos 7838, 1 != 0 -ERROR at chr 3 pos 7918, 1 != 0 -ERROR at chr 3 pos 8133, 1 != 0 +ERROR at chr 0 pos 4499, 1 != 0 +ERROR at chr 0 pos 4515, 1 != 0 +ERROR at chr 0 pos 4833, 1 != 0 +ERROR at chr 0 pos 4887, 1 != 0 +ERROR at chr 0 pos 5028, 1 != 0 +ERROR at chr 0 pos 5062, 1 != 0 +ERROR at chr 0 pos 5764, 1 != 0 +ERROR at chr 0 pos 5789, 1 != 0 +ERROR at chr 0 pos 5889, 1 != 0 +ERROR at chr 0 pos 6002, 1 != 0 +ERROR at chr 0 pos 6204, 1 != 0 +ERROR at chr 0 pos 6327, 1 != 0 +ERROR at chr 0 pos 6330, 1 != 0 +ERROR at chr 0 pos 6496, 1 != 0 +ERROR at chr 0 pos 6674, 1 != 0 +ERROR at chr 0 pos 7082, 1 != 0 +ERROR at chr 0 pos 7415, 1 != 0 +ERROR at chr 0 pos 7513, 1 != 0 +ERROR at chr 0 pos 7621, 1 != 0 +ERROR at chr 0 pos 7734, 1 != 0 +ERROR at chr 0 pos 7752, 1 != 0 +ERROR at chr 0 pos 7818, 1 != 0 +ERROR at chr 0 pos 8015, 1 != 0 +ERROR at chr 0 pos 8020, 1 != 0 +ERROR at chr 0 pos 8050, 1 != 0 +ERROR at chr 0 pos 8116, 1 != 0 +ERROR at chr 0 pos 8181, 1 != 0 +ERROR at chr 0 pos 8372, 1 != 0 +ERROR at chr 0 pos 8383, 1 != 0 +ERROR at chr 1 pos 22, 1 != 0 +ERROR at chr 1 pos 118, 1 != 0 +ERROR at chr 1 pos 186, 1 != 0 +ERROR at chr 1 pos 670, 1 != 0 +ERROR at chr 1 pos 866, 1 != 0 +ERROR at chr 1 pos 896, 1 != 0 +ERROR at chr 1 pos 953, 1 != 0 +ERROR at chr 1 pos 1146, 1 != 0 +ERROR at chr 1 pos 1148, 1 != 0 +ERROR at chr 1 pos 1372, 1 != 0 +ERROR at chr 1 pos 1552, 1 != 0 +ERROR at chr 1 pos 1580, 1 != 0 +ERROR at chr 1 pos 1621, 1 != 0 +ERROR at chr 1 pos 1752, 1 != 0 +ERROR at chr 1 pos 1924, 1 != 0 +ERROR at chr 1 pos 2055, 1 != 0 +ERROR at chr 1 pos 2206, 1 != 0 +ERROR at chr 1 pos 2364, 1 != 0 +ERROR at chr 1 pos 2395, 1 != 0 +ERROR at chr 1 pos 2446, 1 != 0 +ERROR at chr 1 pos 2562, 1 != 0 +ERROR at chr 1 pos 2584, 1 != 0 +ERROR at chr 1 pos 2765, 1 != 0 +ERROR at chr 1 pos 2789, 1 != 0 +ERROR at chr 1 pos 2977, 1 != 0 +ERROR at chr 1 pos 2979, 1 != 0 +ERROR at chr 1 pos 3355, 1 != 0 +ERROR at chr 1 pos 3447, 1 != 0 +ERROR at chr 1 pos 3711, 1 != 0 +ERROR at chr 1 pos 3787, 1 != 0 +ERROR at chr 1 pos 4015, 1 != 0 +ERROR at chr 1 pos 4211, 1 != 0 +ERROR at chr 1 pos 4239, 1 != 0 +ERROR at chr 1 pos 4327, 1 != 0 +ERROR at chr 1 pos 4397, 1 != 0 +ERROR at chr 1 pos 4446, 1 != 0 +ERROR at chr 1 pos 4498, 1 != 0 +ERROR at chr 1 pos 4514, 1 != 0 +ERROR at chr 1 pos 4776, 1 != 0 +ERROR at chr 1 pos 4826, 1 != 0 +ERROR at chr 1 pos 4881, 1 != 0 +ERROR at chr 1 pos 4981, 1 != 0 +ERROR at chr 1 pos 5024, 1 != 0 +ERROR at chr 1 pos 5059, 1 != 0 +ERROR at chr 1 pos 5764, 1 != 0 +ERROR at chr 1 pos 5889, 1 != 0 +ERROR at chr 1 pos 6006, 1 != 0 +ERROR at chr 1 pos 6203, 1 != 0 +ERROR at chr 1 pos 6241, 1 != 0 +ERROR at chr 1 pos 6326, 1 != 0 +ERROR at chr 1 pos 6334, 1 != 0 +ERROR at chr 1 pos 6672, 1 != 0 +ERROR at chr 1 pos 6747, 1 != 0 +ERROR at chr 1 pos 7083, 1 != 0 +ERROR at chr 1 pos 7226, 1 != 0 +ERROR at chr 1 pos 7412, 1 != 0 +ERROR at chr 1 pos 7511, 1 != 0 +ERROR at chr 1 pos 7581, 1 != 0 +ERROR at chr 1 pos 7618, 1 != 0 +ERROR at chr 1 pos 7748, 1 != 0 +ERROR at chr 1 pos 7814, 1 != 0 +ERROR at chr 1 pos 7978, 1 != 0 +ERROR at chr 1 pos 8015, 1 != 0 +ERROR at chr 1 pos 8045, 1 != 0 +ERROR at chr 1 pos 8111, 1 != 0 +ERROR at chr 1 pos 8177, 1 != 0 +ERROR at chr 1 pos 8370, 1 != 0 +ERROR at chr 1 pos 8406, 1 != 0 +ERROR at chr 1 pos 8632, 1 != 0 +ERROR at chr 1 pos 8799, 1 != 0 +ERROR at chr 1 pos 8935, 1 != 0 +ERROR at chr 2 pos 21, 1 != 0 +ERROR at chr 2 pos 121, 1 != 0 +ERROR at chr 2 pos 127, 1 != 0 +ERROR at chr 2 pos 189, 1 != 0 +ERROR at chr 2 pos 336, 1 != 0 +ERROR at chr 2 pos 550, 1 != 0 +ERROR at chr 2 pos 791, 1 != 0 +ERROR at chr 2 pos 862, 1 != 0 +ERROR at chr 2 pos 892, 1 != 0 +ERROR at chr 2 pos 1069, 1 != 0 +ERROR at chr 2 pos 1146, 1 != 0 +ERROR at chr 2 pos 1148, 1 != 0 +ERROR at chr 2 pos 1185, 1 != 0 +ERROR at chr 2 pos 1543, 1 != 0 +ERROR at chr 2 pos 1550, 1 != 0 +ERROR at chr 2 pos 1618, 1 != 0 +ERROR at chr 2 pos 1842, 1 != 0 +ERROR at chr 2 pos 1912, 1 != 0 +ERROR at chr 2 pos 2540, 1 != 0 +ERROR at chr 2 pos 2562, 1 != 0 +ERROR at chr 2 pos 2612, 1 != 0 +ERROR at chr 2 pos 2672, 1 != 0 +ERROR at chr 2 pos 2773, 1 != 0 +ERROR at chr 2 pos 3109, 1 != 0 +ERROR at chr 2 pos 3170, 1 != 0 +ERROR at chr 2 pos 3210, 1 != 0 +ERROR at chr 2 pos 3344, 1 != 0 +ERROR at chr 2 pos 3435, 1 != 0 +ERROR at chr 2 pos 3779, 1 != 0 +ERROR at chr 2 pos 4001, 1 != 0 +ERROR at chr 2 pos 4010, 1 != 0 +ERROR at chr 2 pos 4164, 1 != 0 +ERROR at chr 2 pos 4229, 1 != 0 +ERROR at chr 2 pos 4412, 1 != 0 +ERROR at chr 2 pos 4438, 1 != 0 +ERROR at chr 2 pos 4453, 1 != 0 +ERROR at chr 2 pos 5026, 1 != 0 +ERROR at chr 2 pos 5059, 1 != 0 +ERROR at chr 2 pos 5790, 1 != 0 +ERROR at chr 2 pos 5983, 1 != 0 +ERROR at chr 2 pos 6206, 1 != 0 +ERROR at chr 2 pos 6499, 1 != 0 +ERROR at chr 2 pos 6679, 1 != 0 +ERROR at chr 2 pos 6688, 1 != 0 +ERROR at chr 2 pos 7084, 1 != 0 +ERROR at chr 2 pos 7416, 1 != 0 +ERROR at chr 2 pos 7511, 1 != 0 +ERROR at chr 2 pos 7618, 1 != 0 +ERROR at chr 2 pos 7751, 1 != 0 +ERROR at chr 2 pos 7816, 1 != 0 +ERROR at chr 2 pos 8046, 1 != 0 +ERROR at chr 2 pos 8101, 1 != 0 +ERROR at chr 2 pos 8110, 1 != 0 +ERROR at chr 2 pos 8175, 1 != 0 +ERROR at chr 2 pos 8369, 1 != 0 +ERROR at chr 2 pos 8380, 1 != 0 +ERROR at chr 2 pos 8527, 1 != 0 +ERROR at chr 3 pos 22, 1 != 0 +ERROR at chr 3 pos 40, 1 != 0 +ERROR at chr 3 pos 120, 1 != 0 +ERROR at chr 3 pos 182, 1 != 0 +ERROR at chr 3 pos 188, 1 != 0 +ERROR at chr 3 pos 557, 1 != 0 +ERROR at chr 3 pos 793, 1 != 0 +ERROR at chr 3 pos 897, 1 != 0 +ERROR at chr 3 pos 959, 1 != 0 +ERROR at chr 3 pos 1548, 1 != 0 +ERROR at chr 3 pos 1604, 1 != 0 +ERROR at chr 3 pos 1751, 1 != 0 +ERROR at chr 3 pos 2045, 1 != 0 +ERROR at chr 3 pos 2205, 1 != 0 +ERROR at chr 3 pos 2378, 1 != 0 +ERROR at chr 3 pos 2548, 1 != 0 +ERROR at chr 3 pos 2570, 1 != 0 +ERROR at chr 3 pos 2758, 1 != 0 +ERROR at chr 3 pos 2769, 1 != 0 +ERROR at chr 3 pos 2782, 1 != 0 +ERROR at chr 3 pos 2883, 1 != 0 +ERROR at chr 3 pos 2973, 1 != 0 +ERROR at chr 3 pos 3067, 1 != 0 +ERROR at chr 3 pos 3219, 1 != 0 +ERROR at chr 3 pos 3351, 1 != 0 +ERROR at chr 3 pos 3446, 1 != 0 +ERROR at chr 3 pos 3534, 1 != 0 +ERROR at chr 3 pos 3618, 1 != 0 +ERROR at chr 3 pos 3782, 1 != 0 +ERROR at chr 3 pos 4000, 1 != 0 +ERROR at chr 3 pos 4074, 1 != 0 +ERROR at chr 3 pos 4163, 1 != 0 +ERROR at chr 3 pos 4198, 1 != 0 +ERROR at chr 3 pos 4228, 1 != 0 +ERROR at chr 3 pos 4265, 1 != 0 +ERROR at chr 3 pos 4338, 1 != 0 +ERROR at chr 3 pos 4439, 1 != 0 +ERROR at chr 3 pos 4484, 1 != 0 +ERROR at chr 3 pos 4491, 1 != 0 +ERROR at chr 3 pos 4507, 1 != 0 +ERROR at chr 3 pos 4824, 1 != 0 +ERROR at chr 3 pos 5015, 1 != 0 +ERROR at chr 3 pos 5749, 1 != 0 +ERROR at chr 3 pos 5774, 1 != 0 +ERROR at chr 3 pos 5868, 1 != 0 +ERROR at chr 3 pos 5982, 1 != 0 +ERROR at chr 3 pos 6061, 1 != 0 +ERROR at chr 3 pos 6115, 1 != 0 +ERROR at chr 3 pos 6293, 1 != 0 +ERROR at chr 3 pos 6296, 1 != 0 +ERROR at chr 3 pos 6309, 1 != 0 +ERROR at chr 3 pos 6461, 1 != 0 +ERROR at chr 3 pos 6636, 1 != 0 +ERROR at chr 3 pos 7007, 1 != 0 +ERROR at chr 3 pos 7043, 1 != 0 +ERROR at chr 3 pos 7118, 1 != 0 +ERROR at chr 3 pos 7378, 1 != 0 +ERROR at chr 3 pos 7438, 1 != 0 +ERROR at chr 3 pos 7586, 1 != 0 +ERROR at chr 3 pos 7716, 1 != 0 +ERROR at chr 3 pos 7780, 1 != 0 +ERROR at chr 3 pos 7977, 1 != 0 +ERROR at chr 3 pos 8015, 1 != 0 +ERROR at chr 3 pos 8080, 1 != 0 +ERROR at chr 3 pos 8334, 1 != 0 ERROR at chr 3 pos 8340, 1 != 0 -ERROR at chr 3 pos 8568, 1 != 0 -ERROR at chr 3 pos 8610, 1 != 0 -ERROR at chr 3 pos 8726, 1 != 0 -ERROR at chr 3 pos 8927, 1 != 0 -ERROR at chr 4 pos 5, 1 != 0 -ERROR at chr 4 pos 20, 1 != 0 -ERROR at chr 4 pos 55, 1 != 0 -ERROR at chr 4 pos 213, 1 != 0 -ERROR at chr 4 pos 229, 1 != 0 -ERROR at chr 4 pos 230, 1 != 0 -ERROR at chr 4 pos 393, 1 != 0 -ERROR at chr 4 pos 596, 1 != 0 -ERROR at chr 4 pos 612, 1 != 0 -ERROR at chr 4 pos 654, 1 != 0 -ERROR at chr 4 pos 701, 1 != 0 -ERROR at chr 4 pos 741, 1 != 0 -ERROR at chr 4 pos 2154, 1 != 0 -ERROR at chr 4 pos 2429, 1 != 0 -ERROR at chr 4 pos 2956, 1 != 0 -ERROR at chr 4 pos 2995, 1 != 0 -ERROR at chr 4 pos 3070, 1 != 0 -ERROR at chr 4 pos 3116, 1 != 0 -ERROR at chr 4 pos 3394, 1 != 0 -ERROR at chr 4 pos 3427, 1 != 0 -ERROR at chr 4 pos 3458, 1 != 0 -ERROR at chr 4 pos 3707, 1 != 0 -ERROR at chr 4 pos 3729, 1 != 0 -ERROR at chr 4 pos 3764, 1 != 0 -ERROR at chr 4 pos 3925, 1 != 0 -ERROR at chr 4 pos 3934, 1 != 0 -ERROR at chr 4 pos 4393, 1 != 0 -ERROR at chr 4 pos 4432, 1 != 0 +ERROR at chr 3 pos 8344, 1 != 0 +ERROR at chr 3 pos 8495, 1 != 0 +ERROR at chr 4 pos 21, 1 != 0 +ERROR at chr 4 pos 120, 1 != 0 +ERROR at chr 4 pos 188, 1 != 0 +ERROR at chr 4 pos 620, 1 != 0 +ERROR at chr 4 pos 661, 1 != 0 +ERROR at chr 4 pos 856, 1 != 0 +ERROR at chr 4 pos 887, 1 != 0 +ERROR at chr 4 pos 947, 1 != 0 +ERROR at chr 4 pos 1142, 1 != 0 +ERROR at chr 4 pos 1144, 1 != 0 +ERROR at chr 4 pos 1228, 1 != 0 +ERROR at chr 4 pos 1542, 1 != 0 +ERROR at chr 4 pos 1720, 1 != 0 +ERROR at chr 4 pos 1745, 1 != 0 +ERROR at chr 4 pos 1893, 1 != 0 +ERROR at chr 4 pos 1920, 1 != 0 +ERROR at chr 4 pos 1946, 1 != 0 +ERROR at chr 4 pos 2210, 1 != 0 +ERROR at chr 4 pos 2347, 1 != 0 +ERROR at chr 4 pos 2350, 1 != 0 +ERROR at chr 4 pos 2398, 1 != 0 +ERROR at chr 4 pos 2544, 1 != 0 +ERROR at chr 4 pos 2561, 1 != 0 +ERROR at chr 4 pos 2766, 1 != 0 +ERROR at chr 4 pos 2793, 1 != 0 +ERROR at chr 4 pos 2896, 1 != 0 +ERROR at chr 4 pos 3239, 1 != 0 +ERROR at chr 4 pos 3369, 1 != 0 +ERROR at chr 4 pos 3461, 1 != 0 +ERROR at chr 4 pos 3552, 1 != 0 +ERROR at chr 4 pos 4022, 1 != 0 +ERROR at chr 4 pos 4183, 1 != 0 ERROR at chr 4 pos 4511, 1 != 0 -ERROR at chr 4 pos 4581, 1 != 0 -ERROR at chr 4 pos 4847, 1 != 0 -ERROR at chr 4 pos 5060, 1 != 0 -ERROR at chr 4 pos 5197, 1 != 0 -ERROR at chr 4 pos 5570, 1 != 0 -ERROR at chr 4 pos 5757, 1 != 0 -ERROR at chr 4 pos 5790, 1 != 0 -ERROR at chr 4 pos 5910, 1 != 0 -ERROR at chr 4 pos 6092, 1 != 0 -ERROR at chr 4 pos 6354, 1 != 0 -ERROR at chr 4 pos 6429, 1 != 0 -ERROR at chr 4 pos 6450, 1 != 0 -ERROR at chr 4 pos 7116, 1 != 0 -ERROR at chr 4 pos 7122, 1 != 0 -ERROR at chr 4 pos 7139, 1 != 0 -ERROR at chr 4 pos 7205, 1 != 0 -ERROR at chr 4 pos 7206, 1 != 0 -ERROR at chr 4 pos 7259, 1 != 0 -ERROR at chr 4 pos 7535, 1 != 0 -ERROR at chr 4 pos 7678, 1 != 0 -ERROR at chr 4 pos 7852, 1 != 0 -ERROR at chr 4 pos 7932, 1 != 0 -ERROR at chr 4 pos 8115, 1 != 0 -ERROR at chr 4 pos 8131, 1 != 0 -ERROR at chr 4 pos 8146, 1 != 0 -ERROR at chr 4 pos 8301, 1 != 0 -ERROR at chr 4 pos 8353, 1 != 0 -ERROR at chr 4 pos 8579, 1 != 0 -ERROR at chr 4 pos 8624, 1 != 0 -ERROR at chr 4 pos 8778, 1 != 0 -ERROR at chr 4 pos 8781, 1 != 0 -ERROR at chr 5 pos 431, 1 != 0 -ERROR at chr 5 pos 439, 1 != 0 -ERROR at chr 5 pos 586, 1 != 0 -ERROR at chr 5 pos 603, 1 != 0 -ERROR at chr 5 pos 648, 1 != 0 -ERROR at chr 5 pos 695, 1 != 0 -ERROR at chr 5 pos 736, 1 != 0 -ERROR at chr 5 pos 923, 1 != 0 -ERROR at chr 5 pos 1179, 1 != 0 -ERROR at chr 5 pos 1483, 1 != 0 -ERROR at chr 5 pos 1616, 1 != 0 -ERROR at chr 5 pos 1703, 1 != 0 -ERROR at chr 5 pos 1707, 1 != 0 -ERROR at chr 5 pos 1750, 1 != 0 -ERROR at chr 5 pos 1798, 1 != 0 -ERROR at chr 5 pos 2060, 1 != 0 -ERROR at chr 5 pos 2417, 1 != 0 -ERROR at chr 5 pos 2543, 1 != 0 -ERROR at chr 5 pos 2668, 1 != 0 -ERROR at chr 5 pos 3084, 1 != 0 -ERROR at chr 5 pos 3526, 1 != 0 -ERROR at chr 5 pos 3723, 1 != 0 -ERROR at chr 5 pos 3821, 1 != 0 -ERROR at chr 5 pos 4402, 1 != 0 -ERROR at chr 5 pos 4443, 1 != 0 -ERROR at chr 5 pos 4518, 1 != 0 -ERROR at chr 5 pos 4590, 1 != 0 -ERROR at chr 5 pos 4858, 1 != 0 -ERROR at chr 5 pos 4910, 1 != 0 -ERROR at chr 5 pos 5065, 1 != 0 -ERROR at chr 5 pos 5201, 1 != 0 -ERROR at chr 5 pos 5487, 1 != 0 -ERROR at chr 5 pos 5580, 1 != 0 -ERROR at chr 5 pos 5766, 1 != 0 -ERROR at chr 5 pos 6096, 1 != 0 -ERROR at chr 5 pos 6354, 1 != 0 -ERROR at chr 5 pos 6431, 1 != 0 -ERROR at chr 5 pos 7164, 1 != 0 -ERROR at chr 5 pos 7225, 1 != 0 -ERROR at chr 5 pos 7226, 1 != 0 -ERROR at chr 5 pos 7259, 1 != 0 -ERROR at chr 5 pos 7704, 1 != 0 -ERROR at chr 5 pos 7888, 1 != 0 -ERROR at chr 5 pos 7967, 1 != 0 -ERROR at chr 5 pos 8180, 1 != 0 -ERROR at chr 5 pos 8227, 1 != 0 -ERROR at chr 5 pos 8357, 1 != 0 -ERROR at chr 5 pos 8773, 1 != 0 -ERROR at chr 5 pos 8809, 1 != 0 +ERROR at chr 4 pos 4526, 1 != 0 +ERROR at chr 4 pos 4798, 1 != 0 +ERROR at chr 4 pos 4844, 1 != 0 +ERROR at chr 4 pos 4899, 1 != 0 +ERROR at chr 4 pos 5039, 1 != 0 +ERROR at chr 4 pos 5074, 1 != 0 +ERROR at chr 4 pos 5819, 1 != 0 +ERROR at chr 4 pos 6191, 1 != 0 +ERROR at chr 4 pos 6230, 1 != 0 +ERROR at chr 4 pos 6353, 1 != 0 +ERROR at chr 4 pos 6356, 1 != 0 +ERROR at chr 4 pos 6494, 1 != 0 +ERROR at chr 4 pos 6535, 1 != 0 +ERROR at chr 4 pos 6701, 1 != 0 +ERROR at chr 4 pos 7063, 1 != 0 +ERROR at chr 4 pos 7111, 1 != 0 +ERROR at chr 4 pos 7449, 1 != 0 +ERROR at chr 4 pos 7549, 1 != 0 +ERROR at chr 4 pos 7655, 1 != 0 +ERROR at chr 4 pos 7763, 1 != 0 +ERROR at chr 4 pos 7781, 1 != 0 +ERROR at chr 4 pos 7844, 1 != 0 +ERROR at chr 4 pos 8007, 1 != 0 +ERROR at chr 4 pos 8036, 1 != 0 +ERROR at chr 4 pos 8041, 1 != 0 +ERROR at chr 4 pos 8071, 1 != 0 +ERROR at chr 4 pos 8138, 1 != 0 +ERROR at chr 4 pos 8205, 1 != 0 +ERROR at chr 4 pos 8393, 1 != 0 +ERROR at chr 4 pos 8404, 1 != 0 +ERROR at chr 5 pos 21, 1 != 0 +ERROR at chr 5 pos 119, 1 != 0 +ERROR at chr 5 pos 183, 1 != 0 +ERROR at chr 5 pos 491, 1 != 0 +ERROR at chr 5 pos 535, 1 != 0 +ERROR at chr 5 pos 832, 1 != 0 +ERROR at chr 5 pos 868, 1 != 0 +ERROR at chr 5 pos 952, 1 != 0 +ERROR at chr 5 pos 1148, 1 != 0 +ERROR at chr 5 pos 1150, 1 != 0 +ERROR at chr 5 pos 1726, 1 != 0 +ERROR at chr 5 pos 1754, 1 != 0 +ERROR at chr 5 pos 2003, 1 != 0 +ERROR at chr 5 pos 2018, 1 != 0 +ERROR at chr 5 pos 2057, 1 != 0 +ERROR at chr 5 pos 2210, 1 != 0 +ERROR at chr 5 pos 2397, 1 != 0 +ERROR at chr 5 pos 2565, 1 != 0 +ERROR at chr 5 pos 2587, 1 != 0 +ERROR at chr 5 pos 2610, 1 != 0 +ERROR at chr 5 pos 2785, 1 != 0 +ERROR at chr 5 pos 2799, 1 != 0 +ERROR at chr 5 pos 2899, 1 != 0 +ERROR at chr 5 pos 3370, 1 != 0 +ERROR at chr 5 pos 3384, 1 != 0 +ERROR at chr 5 pos 3462, 1 != 0 +ERROR at chr 5 pos 3801, 1 != 0 +ERROR at chr 5 pos 4050, 1 != 0 +ERROR at chr 5 pos 4136, 1 != 0 +ERROR at chr 5 pos 4137, 1 != 0 +ERROR at chr 5 pos 4191, 1 != 0 +ERROR at chr 5 pos 4260, 1 != 0 +ERROR at chr 5 pos 4336, 1 != 0 +ERROR at chr 5 pos 4470, 1 != 0 +ERROR at chr 5 pos 4520, 1 != 0 +ERROR at chr 5 pos 4536, 1 != 0 +ERROR at chr 5 pos 4854, 1 != 0 +ERROR at chr 5 pos 4906, 1 != 0 +ERROR at chr 5 pos 5904, 1 != 0 +ERROR at chr 5 pos 6016, 1 != 0 +ERROR at chr 5 pos 6219, 1 != 0 +ERROR at chr 5 pos 6345, 1 != 0 +ERROR at chr 5 pos 6515, 1 != 0 +ERROR at chr 5 pos 6551, 1 != 0 +ERROR at chr 5 pos 7106, 1 != 0 +ERROR at chr 5 pos 7442, 1 != 0 +ERROR at chr 5 pos 7538, 1 != 0 +ERROR at chr 5 pos 7635, 1 != 0 +ERROR at chr 5 pos 7649, 1 != 0 +ERROR at chr 5 pos 7762, 1 != 0 +ERROR at chr 5 pos 8040, 1 != 0 +ERROR at chr 5 pos 8045, 1 != 0 +ERROR at chr 5 pos 8075, 1 != 0 +ERROR at chr 5 pos 8142, 1 != 0 +ERROR at chr 5 pos 8402, 1 != 0 Test # 0 FAILED obj-*/graphconstructor/twopaco -f 20 -k 11 example/example.fa -o example/example.dbg Threads = 1 @@ -2832,7 +2905,7 @@ dh_testroot -O--sourcedir=src dh_prep -O--sourcedir=src dh_auto_install --destdir=debian/twopaco/ -O--sourcedir=src - cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/reproducible-path/twopaco-1.0.0\+dfsg/debian/twopaco AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/reproducible-path/twopaco-1.0.0\+dfsg/debian/twopaco AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/twopaco-1.0.0+dfsg/src -B/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -2947,14 +3020,14 @@ diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged -dpkg-shlibdeps: warning: debian/twopaco/usr/bin/twopaco contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/twopaco/usr/bin/graphdump contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/twopaco/usr/bin/twopaco contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -O--sourcedir=src dh_gencontrol -O--sourcedir=src dh_md5sums -O--sourcedir=src dh_builddeb -O--sourcedir=src -dpkg-deb: building package 'twopaco' in '../twopaco_1.0.0+dfsg-1_armhf.deb'. dpkg-deb: building package 'twopaco-dbgsym' in '../twopaco-dbgsym_1.0.0+dfsg-1_armhf.deb'. +dpkg-deb: building package 'twopaco' in '../twopaco_1.0.0+dfsg-1_armhf.deb'. dpkg-genbuildinfo --build=binary -O../twopaco_1.0.0+dfsg-1_armhf.buildinfo dpkg-genchanges --build=binary -O../twopaco_1.0.0+dfsg-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -2962,12 +3035,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1581/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1581/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/6685 and its subdirectories -I: Current time: Tue Nov 5 23:55:43 -12 2024 -I: pbuilder-time-stamp: 1730894143 +I: removing directory /srv/workspace/pbuilder/1581 and its subdirectories +I: Current time: Thu Nov 7 02:11:27 +14 2024 +I: pbuilder-time-stamp: 1730895087