Diff of the two buildlogs: -- --- b1/build.log 2025-01-24 12:20:42.866632110 +0000 +++ b2/build.log 2025-01-24 12:22:28.553872569 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Feb 26 06:42:42 -12 2026 -I: pbuilder-time-stamp: 1772131362 +I: Current time: Sat Jan 25 02:20:46 +14 2025 +I: pbuilder-time-stamp: 1737721246 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -25,54 +25,86 @@ dpkg-source: info: applying adjust-shenwei356-kmers.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/128514/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/20623/tmp/hooks/D01_modify_environment starting +debug: Running on ionos12-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 24 12:21 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/20623/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/20623/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='0bd63e385231447d804735f0268585d5' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='128514' - PS1='# ' - PS2='> ' + INVOCATION_ID=9821d46d11a54557a7360105f2efd99e + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=20623 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.57uW1U8m/pbuilderrc_buaS --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.57uW1U8m/b1 --logfile b1/build.log golang-github-shenwei356-bio_0.13.3-1.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.57uW1U8m/pbuilderrc_N405 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.57uW1U8m/b2 --logfile b2/build.log golang-github-shenwei356-bio_0.13.3-1.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos6-i386 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/128514/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/20623/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -222,7 +254,7 @@ Get: 92 http://deb.debian.org/debian unstable/main i386 golang-github-shenwei356-util-dev all 0.5.2-1 [18.4 kB] Get: 93 http://deb.debian.org/debian unstable/main i386 golang-github-will-rowe-nthash-dev all 0.4.0-1 [5644 B] Get: 94 http://deb.debian.org/debian unstable/main i386 golang-github-zeebo-wyhash-dev all 0.0.1-3 [23.5 kB] -Fetched 110 MB in 5s (23.6 MB/s) +Fetched 110 MB in 2s (51.5 MB/s) Preconfiguring packages ... Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19818 files and directories currently installed.) @@ -539,8 +571,8 @@ Setting up tzdata (2025a-1) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Feb 26 18:43:11 UTC 2026. -Universal Time is now: Thu Feb 26 18:43:11 UTC 2026. +Local time is now: Fri Jan 24 12:21:33 UTC 2025. +Universal Time is now: Fri Jan 24 12:21:33 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up golang-github-cespare-xxhash-dev (2.3.0-1) ... @@ -619,7 +651,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/golang-github-shenwei356-bio-0.13.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../golang-github-shenwei356-bio_0.13.3-1_source.changes +I: user script /srv/workspace/pbuilder/20623/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/20623/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/golang-github-shenwei356-bio-0.13.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../golang-github-shenwei356-bio_0.13.3-1_source.changes dpkg-buildpackage: info: source package golang-github-shenwei356-bio dpkg-buildpackage: info: source version 0.13.3-1 dpkg-buildpackage: info: source distribution unstable @@ -637,177 +673,177 @@ dh_autoreconf -O--builddirectory=_build -O--buildsystem=golang dh_auto_configure -O--builddirectory=_build -O--buildsystem=golang dh_auto_build -O--builddirectory=_build -O--buildsystem=golang - cd _build && go install -trimpath -v -p 22 github.com/shenwei356/bio/featio/gtf github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/sketches github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/util -internal/goos -internal/profilerecord -internal/coverage/rtcov -internal/godebugs + cd _build && go install -trimpath -v -p 10 github.com/shenwei356/bio/featio/gtf github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/sketches github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/util +internal/unsafeheader internal/goarch -github.com/dsnet/compress/bzip2/internal/sais -internal/itoa -internal/msan -math/bits -internal/asan -github.com/dsnet/compress/internal internal/byteorder +internal/coverage/rtcov +internal/goos internal/runtime/atomic +internal/profilerecord +internal/godebugs +internal/goexperiment internal/cpu +internal/abi +internal/runtime/syscall +runtime/internal/math +runtime/internal/sys cmp -sync/atomic -unicode internal/race -internal/runtime/syscall -internal/goexperiment -internal/unsafeheader +math/bits +internal/itoa +internal/chacha8rand unicode/utf8 +sync/atomic +internal/asan +unicode +internal/msan +github.com/dsnet/compress/bzip2/internal/sais +github.com/dsnet/compress/internal crypto/internal/alias -runtime/internal/math crypto/internal/boring/sig +internal/runtime/exithook +internal/bytealg log/internal -internal/abi +math github.com/ulikunitz/xz/internal/hash -runtime/internal/sys container/list unicode/utf16 vendor/golang.org/x/crypto/cryptobyte/asn1 vendor/golang.org/x/crypto/internal/alias internal/nettrace -internal/chacha8rand -math github.com/elliotwutingfeng/asciiset -internal/bytealg -internal/runtime/exithook internal/stringslite -github.com/klauspost/compress runtime -internal/weak -crypto/subtle +github.com/klauspost/compress iter internal/reflectlite +crypto/subtle +internal/weak sync maps slices +internal/singleflight internal/testlog internal/bisect -internal/singleflight runtime/cgo +internal/godebug errors sort -internal/godebug -internal/oserror -io +strconv path -crypto/internal/edwards25519/field vendor/golang.org/x/net/dns/dnsmessage -math/rand/v2 -strconv +crypto/internal/edwards25519/field +internal/oserror +io +math/rand crypto/internal/nistec/fiat syscall -hash -crypto/internal/randutil +math/rand/v2 +crypto/internal/edwards25519 bytes strings -math/rand -crypto/internal/edwards25519 +hash +hash/crc32 +crypto/internal/randutil hash/crc64 internal/concurrent -hash/crc32 -vendor/golang.org/x/text/transform +reflect +crypto crypto/cipher -github.com/twotwotwo/sorts crypto/rc4 -crypto unique -reflect -github.com/dsnet/compress/internal/errors -net/http/internal/ascii -bufio crypto/md5 -regexp/syntax -github.com/shenwei356/bio/util -github.com/twotwotwo/sorts/sortutil -crypto/des +vendor/golang.org/x/text/transform +bufio +github.com/dsnet/compress/internal/errors crypto/internal/boring +crypto/des net/netip +net/http/internal/ascii +github.com/twotwotwo/sorts crypto/sha256 -crypto/hmac crypto/aes crypto/sha512 -crypto/sha1 github.com/dsnet/compress +crypto/hmac +crypto/sha1 +github.com/twotwotwo/sorts/sortutil vendor/golang.org/x/crypto/hkdf -regexp -internal/syscall/unix +regexp/syntax +github.com/shenwei356/bio/util internal/syscall/execenv time +internal/syscall/unix +regexp crypto/internal/nistec -context io/fs +context internal/poll crypto/ecdh internal/filepathlite internal/fmtsort encoding/binary os -vendor/golang.org/x/crypto/chacha20 github.com/cespare/xxhash +vendor/golang.org/x/crypto/chacha20 +github.com/klauspost/compress/internal/snapref vendor/golang.org/x/crypto/internal/poly1305 -github.com/zeebo/wyhash encoding/base64 -github.com/klauspost/compress/internal/snapref +github.com/zeebo/wyhash golang.org/x/sys/unix encoding/pem vendor/golang.org/x/crypto/chacha20poly1305 -vendor/golang.org/x/sys/cpu path/filepath fmt +vendor/golang.org/x/sys/cpu net vendor/golang.org/x/crypto/sha3 os/exec -encoding/hex github.com/dsnet/compress/internal/prefix -github.com/klauspost/compress/fse +encoding/hex log -net/http/internal -os/user -github.com/will-rowe/nthash -github.com/shenwei356/util/byteutil -runtime/debug -mime/quotedprintable -vendor/golang.org/x/net/http2/hpack -mime -math/big github.com/ulikunitz/xz/internal/xlog +math/big +runtime/debug +github.com/klauspost/compress/fse compress/flate net/url -vendor/golang.org/x/text/unicode/norm -github.com/shenwei356/bio/seq vendor/golang.org/x/text/unicode/bidi github.com/ulikunitz/xz/lzma +vendor/golang.org/x/text/unicode/norm github.com/dsnet/compress/bzip2 github.com/klauspost/compress/huff0 -compress/gzip +vendor/golang.org/x/net/http2/hpack github.com/klauspost/compress/flate -github.com/shenwei356/bio/sketches +compress/gzip vendor/golang.org/x/text/secure/bidirule -vendor/golang.org/x/net/idna github.com/ulikunitz/xz +mime +mime/quotedprintable +net/http/internal +github.com/shenwei356/util/byteutil +os/user +github.com/will-rowe/nthash github.com/edsrzf/mmap-go +github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai crypto/rand crypto/elliptic crypto/internal/bigmod crypto/internal/boring/bbig -crypto/dsa encoding/asn1 +crypto/dsa +vendor/golang.org/x/net/idna +github.com/shenwei356/bio/sketches +github.com/klauspost/compress/zstd crypto/ed25519 crypto/internal/hpke crypto/internal/mlkem768 -github.com/klauspost/compress/zstd crypto/rsa github.com/klauspost/pgzip -vendor/golang.org/x/crypto/cryptobyte crypto/x509/pkix +vendor/golang.org/x/crypto/cryptobyte crypto/ecdsa vendor/golang.org/x/net/http/httpproxy net/textproto @@ -819,49 +855,49 @@ net/http github.com/shenwei356/xopen github.com/shenwei356/breader -github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/seqio/fastx +github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/featio/gtf dh_auto_test -O--builddirectory=_build -O--buildsystem=golang - cd _build && go test -vet=off -v -p 22 github.com/shenwei356/bio/featio/gtf github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/sketches github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/util + cd _build && go test -vet=off -v -p 10 github.com/shenwei356/bio/featio/gtf github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/sketches github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/util === RUN TestGTF -{140 Twinscan inter 5141 8522 0xa036370 []} -{140 Twinscan inter_CNS 8523 9711 0xa036380 []} -{140 Twinscan inter 9712 13182 0xa036388 []} -{140 Twinscan 3UTR 65149 65487 0xa036390 []} -{140 Twinscan 3UTR 66823 66992 0xa036398 []} -{140 Twinscan stop_codon 66993 66995 0xa0363a0 0xa014248 []} -{140 Twinscan CDS 66996 66999 0xa0363a8 0xa01424c []} -{140 Twinscan intron_CNS 70103 70151 0xa0363b0 []} -{140 Twinscan CDS 70207 70294 0xa0363b8 0xa0142a0 []} -{140 Twinscan CDS 71696 71807 0xa0363c0 0xa0142a4 []} -{140 Twinscan start_codon 71805 71806 0xa0363c8 0xa0142a8 []} -{140 Twinscan start_codon 73222 73222 0xa0363d0 0xa0142ac []} -{140 Twinscan CDS 73222 73222 0xa0363d8 0xa0142b0 []} -{140 Twinscan 5UTR 73223 73504 0xa0363e0 []} +{140 Twinscan inter 5141 8522 0x9c36370 []} +{140 Twinscan inter_CNS 8523 9711 0x9c36380 []} +{140 Twinscan inter 9712 13182 0x9c36388 []} +{140 Twinscan 3UTR 65149 65487 0x9c36390 []} +{140 Twinscan 3UTR 66823 66992 0x9c36398 []} +{140 Twinscan stop_codon 66993 66995 0x9c363a0 0x9c14258 []} +{140 Twinscan CDS 66996 66999 0x9c363a8 0x9c1425c []} +{140 Twinscan intron_CNS 70103 70151 0x9c363b0 []} +{140 Twinscan CDS 70207 70294 0x9c363b8 0x9c142b0 []} +{140 Twinscan CDS 71696 71807 0x9c363c0 0x9c142b4 []} +{140 Twinscan start_codon 71805 71806 0x9c363c8 0x9c142b8 []} +{140 Twinscan start_codon 73222 73222 0x9c363d0 0x9c142bc []} +{140 Twinscan CDS 73222 73222 0x9c363d8 0x9c142c0 []} +{140 Twinscan 5UTR 73223 73504 0x9c363e0 []} --- PASS: TestGTF (0.00s) === RUN TestGTF2 -{381 Twinscan exon 150 200 0xa036440 []} -{381 Twinscan exon 300 401 0xa036450 []} -{381 Twinscan CDS 380 401 0xa036458 0xa0142dc []} -{381 Twinscan exon 501 650 0xa036460 []} -{381 Twinscan CDS 501 650 0xa036468 0xa014320 []} -{381 Twinscan exon 700 800 0xa036470 []} -{381 Twinscan CDS 700 707 0xa036478 0xa014324 []} -{381 Twinscan exon 900 1000 0xa036480 []} -{381 Twinscan start_codon 380 382 0xa036488 0xa014328 []} -{381 Twinscan stop_codon 708 710 0xa036490 0xa01432c []} +{381 Twinscan exon 150 200 0x9c36440 []} +{381 Twinscan exon 300 401 0x9c36450 []} +{381 Twinscan CDS 380 401 0x9c36458 0x9c142ec []} +{381 Twinscan exon 501 650 0x9c36460 []} +{381 Twinscan CDS 501 650 0x9c36468 0x9c14330 []} +{381 Twinscan exon 700 800 0x9c36470 []} +{381 Twinscan CDS 700 707 0x9c36478 0x9c14334 []} +{381 Twinscan exon 900 1000 0x9c36480 []} +{381 Twinscan start_codon 380 382 0x9c36488 0x9c14338 []} +{381 Twinscan stop_codon 708 710 0x9c36490 0x9c1433c []} --- PASS: TestGTF2 (0.00s) === RUN TestGTF3 -{NC_002516.2 genbank gene 6261828 6263564 0xa0bc000 0xa0aa01c []} -{NC_002516.2 genbank CDS 6261828 6263564 0xa0bc010 0xa0aa020 []} -{NC_002516.2 genbank gene 6263805 6264212 0xa0bc018 0xa0aa024 []} -{NC_002516.2 genbank CDS 6263805 6264212 0xa0bc020 0xa0aa028 []} -{NC_002516.2 genbank gene 6264227 6264361 0xa0bc028 0xa0aa02c []} -{NC_002516.2 genbank CDS 6264227 6264361 0xa0bc030 0xa0aa030 []} +{NC_002516.2 genbank gene 6261828 6263564 0x9c364f0 0x9c1436c []} +{NC_002516.2 genbank CDS 6261828 6263564 0x9c36500 0x9c143a0 []} +{NC_002516.2 genbank gene 6263805 6264212 0x9c36508 0x9c143a4 []} +{NC_002516.2 genbank CDS 6263805 6264212 0x9c36510 0x9c143a8 []} +{NC_002516.2 genbank gene 6264227 6264361 0x9c36518 0x9c143ac []} +{NC_002516.2 genbank CDS 6264227 6264361 0x9c36520 0x9c143b0 []} --- PASS: TestGTF3 (0.00s) PASS -ok github.com/shenwei356/bio/featio/gtf 0.007s +ok github.com/shenwei356/bio/featio/gtf 0.012s === RUN TestAlphabet --- PASS: TestAlphabet (0.00s) === RUN TestAlphabet2 @@ -885,27 +921,27 @@ === RUN TestSubSeqInplace --- PASS: TestSubSeqInplace (0.00s) PASS -ok github.com/shenwei356/bio/seq 0.019s +ok github.com/shenwei356/bio/seq 0.042s === RUN TestFastaReader ---- PASS: TestFastaReader (0.00s) +--- PASS: TestFastaReader (0.01s) === RUN TestFastaReaderNotMapWholeFile --- PASS: TestFastaReaderNotMapWholeFile (0.00s) === RUN TestFastaReader2NotMapWholeFile ---- PASS: TestFastaReader2NotMapWholeFile (0.02s) +--- PASS: TestFastaReader2NotMapWholeFile (0.04s) === RUN TestFastaReader2 ---- PASS: TestFastaReader2 (0.02s) +--- PASS: TestFastaReader2 (0.03s) PASS -ok github.com/shenwei356/bio/seqio/fai 0.066s +ok github.com/shenwei356/bio/seqio/fai 0.139s === RUN TestFastaReader2 --- PASS: TestFastaReader2 (0.00s) === RUN TestFastaReader3 --- PASS: TestFastaReader3 (0.00s) === RUN TestFastqReadern ---- PASS: TestFastqReadern (0.02s) +--- PASS: TestFastqReadern (0.01s) === RUN TestFastaReader --- PASS: TestFastaReader (0.02s) === RUN TestFastqReader ---- PASS: TestFastqReader (0.01s) +--- PASS: TestFastqReader (0.02s) === RUN TestFastqReader2 --- PASS: TestFastqReader2 (0.01s) === RUN TestFastqReader3 @@ -913,11 +949,11 @@ === RUN TestBlankFile --- PASS: TestBlankFile (0.01s) === RUN TestBlankFile2 ---- PASS: TestBlankFile2 (0.01s) +--- PASS: TestBlankFile2 (0.03s) === RUN TestEmptyFile --- PASS: TestEmptyFile (0.01s) PASS -ok github.com/shenwei356/bio/seqio/fastx 0.104s +ok github.com/shenwei356/bio/seqio/fastx 0.166s === RUN TestProteinIterator --- PASS: TestProteinIterator (0.00s) === RUN TestKmerIterator @@ -933,15 +969,15 @@ === RUN TestSyncmer --- PASS: TestSyncmer (0.00s) PASS -ok github.com/shenwei356/bio/sketches 0.018s +ok github.com/shenwei356/bio/sketches 0.033s === RUN TestPackTwoTaxids --- PASS: TestPackTwoTaxids (0.00s) PASS -ok github.com/shenwei356/bio/taxdump 0.003s +ok github.com/shenwei356/bio/taxdump 0.009s === RUN Test --- PASS: Test (0.00s) PASS -ok github.com/shenwei356/bio/util 0.002s +ok github.com/shenwei356/bio/util 0.005s create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=_build -O--buildsystem=golang dh_prep -O--builddirectory=_build -O--buildsystem=golang @@ -973,12 +1009,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/20623/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/20623/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/128514 and its subdirectories -I: Current time: Thu Feb 26 06:43:41 -12 2026 -I: pbuilder-time-stamp: 1772131421 +I: removing directory /srv/workspace/pbuilder/20623 and its subdirectories +I: Current time: Sat Jan 25 02:22:27 +14 2025 +I: pbuilder-time-stamp: 1737721347