Diff of the two buildlogs: -- --- b1/build.log 2024-10-20 15:00:32.106422027 +0000 +++ b2/build.log 2024-10-20 15:02:29.210254727 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Oct 20 02:56:56 -12 2024 -I: pbuilder-time-stamp: 1729436216 +I: Current time: Sun Nov 23 11:23:32 +14 2025 +I: pbuilder-time-stamp: 1763846612 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -35,54 +35,86 @@ dpkg-source: info: applying man-align-cols.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/36958/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/5609/tmp/hooks/D01_modify_environment starting +debug: Running on ionos16-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 22 21:23 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/5609/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/5609/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='6ca0f6c010374683adec5722f8b65d3e' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='36958' - PS1='# ' - PS2='> ' + INVOCATION_ID=c75b933672a548f7aea726314c660414 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=5609 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7UzcI3od/pbuilderrc_U9ZC --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7UzcI3od/b1 --logfile b1/build.log kineticstools_0.6.1+git20220223.1326a4d+dfsg-3.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7UzcI3od/pbuilderrc_l2yw --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7UzcI3od/b2 --logfile b2/build.log kineticstools_0.6.1+git20220223.1326a4d+dfsg-3.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos12-i386 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/36958/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/5609/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -311,7 +343,7 @@ Get: 165 http://deb.debian.org/debian unstable/main i386 python3-pytest-xdist all 3.6.1-1 [44.4 kB] Get: 166 http://deb.debian.org/debian unstable/main i386 python3-scipy i386 1.13.1-5 [16.6 MB] Get: 167 http://deb.debian.org/debian unstable/main i386 python3-uritools all 4.0.3-1 [28.6 kB] -Fetched 92.9 MB in 3s (36.9 MB/s) +Fetched 92.9 MB in 1s (73.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19931 files and directories currently installed.) @@ -867,8 +899,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Oct 20 14:57:43 UTC 2024. -Universal Time is now: Sun Oct 20 14:57:43 UTC 2024. +Local time is now: Sat Nov 22 21:24:00 UTC 2025. +Universal Time is now: Sat Nov 22 21:24:00 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:i386 (1:1.1.8-1) ... @@ -1022,7 +1054,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_source.changes +I: user script /srv/workspace/pbuilder/5609/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/5609/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_source.changes dpkg-buildpackage: info: source package kineticstools dpkg-buildpackage: info: source version 0.6.1+git20220223.1326a4d+dfsg-3 dpkg-buildpackage: info: source distribution unstable @@ -1064,29 +1100,29 @@ running build running build_py creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools +copying kineticsTools/sharedArray.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools +copying kineticsTools/MultiSiteDetection.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools +copying kineticsTools/ipdModel.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools +copying kineticsTools/KineticWorker.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/pipelineTools.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools -copying kineticsTools/ResultWriter.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools -copying kineticsTools/MedakaLdaEnricher.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools -copying kineticsTools/MixtureEstimationMethods.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools -copying kineticsTools/ModificationDecode.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools -copying kineticsTools/WorkerProcess.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools +copying kineticsTools/MultiSiteCommon.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/ReferenceUtils.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools -copying kineticsTools/BasicLdaEnricher.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools -copying kineticsTools/__init__.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools +copying kineticsTools/ModificationDecode.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools +copying kineticsTools/ResultWriter.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/loader.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools -copying kineticsTools/MultiSiteDetection.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools -copying kineticsTools/sharedArray.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools +copying kineticsTools/__init__.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/ipdSummary.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools -copying kineticsTools/KineticWorker.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools +copying kineticsTools/MixtureEstimationMethods.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools +copying kineticsTools/MedakaLdaEnricher.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools +copying kineticsTools/BasicLdaEnricher.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/summarizeModifications.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools -copying kineticsTools/MultiSiteCommon.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools -copying kineticsTools/ipdModel.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools copying kineticsTools/PositiveControlEnricher.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools -creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/internal -copying kineticsTools/internal/__init__.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/internal +copying kineticsTools/WorkerProcess.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tasks copying kineticsTools/tasks/gather_bigwig.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tasks copying kineticsTools/tasks/__init__.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tasks +creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/internal +copying kineticsTools/internal/__init__.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/internal running egg_info creating kineticsTools.egg-info writing kineticsTools.egg-info/PKG-INFO @@ -1164,62 +1200,62 @@ rootdir: /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build configfile: pytest.ini plugins: xdist-3.6.1, typeguard-4.3.0 -created: 13/13 workers -13 workers [19 items] +created: 24/24 workers +24 workers [19 items] scheduling tests via LoadScopeScheduling +test/test_ReferenceUtils.py::TestReferenceUtils::test_bam +test/test_integration.py::TestKineticsTools::test_help test/test_ipdModel.py::TestIpdModel::test_refLength +test/test_outputs.py::TestOutputs::test_csv_output test/test_loader.py::test_basic test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig +[gw0] [ 5%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_bam +[gw5] [ 10%] SKIPPED test/test_outputs.py::TestOutputs::test_csv_output +test/test_outputs.py::TestOutputs::test_bigwig +[gw5] [ 15%] SKIPPED test/test_outputs.py::TestOutputs::test_bigwig +[gw1] [ 21%] PASSED test/test_loader.py::test_basic +test/test_loader.py::test_path +[gw1] [ 26%] PASSED test/test_loader.py::test_path +test/test_loader.py::test_path_with_prefixed_chem +[gw1] [ 31%] PASSED test/test_loader.py::test_path_with_prefixed_chem +test/test_loader.py::test_getResourcePathSpec +[gw1] [ 36%] PASSED test/test_loader.py::test_getResourcePathSpec test/test_summarize_modifications.py::TestSummarizeModifications::test_integration -[gw6] [ 5%] SKIPPED test/test_summarize_modifications.py::TestSummarizeModifications::test_integration -test/test_ReferenceUtils.py::TestReferenceUtils::test_bam -[gw0] [ 10%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_bam -test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset -[gw0] [ 15%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset -test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow -[gw2] [ 21%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_refLength +[gw6] [ 42%] SKIPPED test/test_summarize_modifications.py::TestSummarizeModifications::test_integration +[gw2] [ 47%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_refLength test/test_ipdModel.py::TestIpdModel::test_snippetFunc -[gw2] [ 26%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_snippetFunc +[gw2] [ 52%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_snippetFunc test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow -[gw2] [ 31%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow -test/test_integration.py::TestKineticsTools::test_help -test/test_outputs.py::TestOutputs::test_csv_output -[gw5] [ 36%] SKIPPED test/test_outputs.py::TestOutputs::test_csv_output -test/test_outputs.py::TestOutputs::test_bigwig -[gw5] [ 42%] SKIPPED test/test_outputs.py::TestOutputs::test_bigwig -[gw3] [ 47%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig -test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli -[gw3] [ 52%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli -[gw0] [ 57%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow +[gw2] [ 57%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow +test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset +[gw0] [ 63%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset +test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow +[gw0] [ 68%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows -[gw0] [ 63%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows +[gw0] [ 73%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks -[gw0] [ 68%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks -[gw1] [ 73%] PASSED test/test_loader.py::test_basic -test/test_loader.py::test_path -[gw1] [ 78%] PASSED test/test_loader.py::test_path -test/test_loader.py::test_path_with_prefixed_chem -[gw1] [ 84%] PASSED test/test_loader.py::test_path_with_prefixed_chem -test/test_loader.py::test_getResourcePathSpec -[gw1] [ 89%] PASSED test/test_loader.py::test_getResourcePathSpec +[gw0] [ 78%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks +[gw3] [ 84%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig +test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli +[gw3] [ 89%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli [gw4] [ 94%] PASSED test/test_integration.py::TestKineticsTools::test_help test/test_integration.py::TestKineticsTools::test_ecoli_first_50k [gw4] [100%] SKIPPED test/test_integration.py::TestKineticsTools::test_ecoli_first_50k =============================== warnings summary =============================== -../../../../../../usr/lib/python3/dist-packages/pbcore/__init__.py:1: 13 warnings +../../../../../../usr/lib/python3/dist-packages/pbcore/__init__.py:1: 24 warnings /usr/lib/python3/dist-packages/pbcore/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html - generated xml file: /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/nosetests.xml - ============================= slowest 20 durations ============================= -1.26s call test/test_integration.py::TestKineticsTools::test_help +0.71s call test/test_integration.py::TestKineticsTools::test_help (19 durations < 0.005s hidden. Use -vv to show these durations.) -================== 5 passed, 14 skipped, 13 warnings in 3.78s ================== +================== 5 passed, 14 skipped, 24 warnings in 2.73s ================== make[1]: Leaving directory '/build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild @@ -1304,75 +1340,75 @@ creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12 creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages -creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/.pytest_cache/README.md -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/.pytest_cache/.gitignore -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache -creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache/v -creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/nosetests.xml -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/sharedArray.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools +creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tasks/gather_bigwig.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tasks/__init__.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks +creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks/__pycache__ +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tasks/__pycache__/gather_bigwig.cpython-312.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks/__pycache__ +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tasks/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks/__pycache__ +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tree_predict.cpython-312-i386-linux-gnu.so -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/MultiSiteDetection.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/ipdModel.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/KineticWorker.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/pipelineTools.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/MultiSiteCommon.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/ReferenceUtils.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/ModificationDecode.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/ResultWriter.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/MedakaLdaEnricher.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/loader.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/__init__.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/ipdSummary.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/MixtureEstimationMethods.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tree_predict.cpython-312-i386-linux-gnu.so -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools +creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/__pycache__ +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/__pycache__ +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/__pycache__/ipdModel.cpython-312.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/__pycache__ +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/__pycache__/sharedArray.cpython-312.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/__pycache__ +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/__pycache__/loader.cpython-312.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/__pycache__ +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/__pycache__/ReferenceUtils.cpython-312.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/__pycache__ +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/MedakaLdaEnricher.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/internal copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/internal/__init__.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/internal -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/ModificationDecode.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/BasicLdaEnricher.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/resources +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/resources/SP2-C2.npz.gz -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/resources +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/resources/unknown.npz.gz -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/resources copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/resources/P6-C4.npz.gz -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/resources copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/resources/SP3-C3.npz.gz -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/resources -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/resources/unknown.npz.gz -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/resources -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/resources/SP2-C2.npz.gz -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/resources -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/WorkerProcess.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/ReferenceUtils.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/BasicLdaEnricher.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/__init__.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/loader.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/MultiSiteDetection.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/sharedArray.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/ipdSummary.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/KineticWorker.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/summarizeModifications.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/MultiSiteCommon.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/ipdModel.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/PositiveControlEnricher.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools -creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/__pycache__ -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/__pycache__/ReferenceUtils.cpython-312.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/__pycache__ -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/__pycache__/sharedArray.cpython-312.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/__pycache__ -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/__pycache__/ipdModel.cpython-312.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/__pycache__ -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/__pycache__/loader.cpython-312.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/__pycache__ -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/__pycache__ -creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tasks/gather_bigwig.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tasks/__init__.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks -creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks/__pycache__ -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tasks/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks/__pycache__ -copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/tasks/__pycache__/gather_bigwig.cpython-312.pyc -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks/__pycache__ +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/kineticsTools/WorkerProcess.py -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/nosetests.xml -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages +creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/.pytest_cache/.gitignore -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache +creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache/v +creating /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/.pytest_cache/README.md -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache +copying /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.12_kineticstools/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/.pytest_cache +byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/sharedArray.py to sharedArray.cpython-312.pyc +byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks/gather_bigwig.py to gather_bigwig.cpython-312.pyc +byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/MultiSiteDetection.py to MultiSiteDetection.cpython-312.pyc +byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/ipdModel.py to ipdModel.cpython-312.pyc +byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/KineticWorker.py to KineticWorker.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/pipelineTools.py to pipelineTools.cpython-312.pyc +byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/MultiSiteCommon.py to MultiSiteCommon.cpython-312.pyc +byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/ReferenceUtils.py to ReferenceUtils.cpython-312.pyc +byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/ModificationDecode.py to ModificationDecode.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/ResultWriter.py to ResultWriter.cpython-312.pyc -byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/MedakaLdaEnricher.py to MedakaLdaEnricher.cpython-312.pyc +byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/loader.py to loader.cpython-312.pyc +byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/ipdSummary.py to ipdSummary.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/MixtureEstimationMethods.py to MixtureEstimationMethods.cpython-312.pyc +byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/MedakaLdaEnricher.py to MedakaLdaEnricher.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/internal/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/ModificationDecode.py to ModificationDecode.cpython-312.pyc -byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/WorkerProcess.py to WorkerProcess.cpython-312.pyc -byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/ReferenceUtils.py to ReferenceUtils.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/BasicLdaEnricher.py to BasicLdaEnricher.cpython-312.pyc -byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/loader.py to loader.cpython-312.pyc -byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/MultiSiteDetection.py to MultiSiteDetection.cpython-312.pyc -byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/sharedArray.py to sharedArray.cpython-312.pyc -byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/ipdSummary.py to ipdSummary.cpython-312.pyc -byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/KineticWorker.py to KineticWorker.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/summarizeModifications.py to summarizeModifications.cpython-312.pyc -byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/MultiSiteCommon.py to MultiSiteCommon.cpython-312.pyc -byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/ipdModel.py to ipdModel.cpython-312.pyc byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/PositiveControlEnricher.py to PositiveControlEnricher.cpython-312.pyc -byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks/gather_bigwig.py to gather_bigwig.cpython-312.pyc -byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/tasks/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools/WorkerProcess.py to WorkerProcess.cpython-312.pyc running install_egg_info Copying kineticsTools.egg-info to /build/reproducible-path/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.12/dist-packages/kineticsTools-0.8.0.egg-info Skipping SOURCES.txt @@ -1417,10 +1453,10 @@ dpkg-gencontrol: warning: Depends field of package python3-kineticstools: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'python3-kineticstools' in '../python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_i386.deb'. dpkg-deb: building package 'kineticstools-data' in '../kineticstools-data_0.6.1+git20220223.1326a4d+dfsg-3_all.deb'. -dpkg-deb: building package 'python3-kineticstools-dbgsym' in '../python3-kineticstools-dbgsym_0.6.1+git20220223.1326a4d+dfsg-3_i386.deb'. dpkg-deb: building package 'kineticstools' in '../kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_all.deb'. +dpkg-deb: building package 'python3-kineticstools-dbgsym' in '../python3-kineticstools-dbgsym_0.6.1+git20220223.1326a4d+dfsg-3_i386.deb'. +dpkg-deb: building package 'python3-kineticstools' in '../python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_i386.deb'. dpkg-genbuildinfo --build=binary -O../kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_i386.buildinfo dpkg-genchanges --build=binary -O../kineticstools_0.6.1+git20220223.1326a4d+dfsg-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1428,12 +1464,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/5609/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/5609/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/36958 and its subdirectories -I: Current time: Sun Oct 20 03:00:31 -12 2024 -I: pbuilder-time-stamp: 1729436431 +I: removing directory /srv/workspace/pbuilder/5609 and its subdirectories +I: Current time: Sun Nov 23 11:25:25 +14 2025 +I: pbuilder-time-stamp: 1763846725