Diff of the two buildlogs:

--
--- b1/build.log	2025-04-07 14:58:57.083471011 +0000
+++ b2/build.log	2025-04-07 15:01:02.500699492 +0000
@@ -1,8 +1,807 @@
 I: pbuilder: network access will be disabled during build
-I: Current time: Mon Apr  7 02:56:12 -12 2025
-I: pbuilder-time-stamp: 1744037772
+I: Current time: Mon May 11 11:21:57 +14 2026
+I: pbuilder-time-stamp: 1778448117
 I: Building the build Environment
 I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
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+/usr/bin/tar: ./usr/share/man/fr: time stamp 2027-06-12 10:54:30 is 34299145.239245238 s in the future
+/usr/bin/tar: ./usr/share/man/ja: time stamp 2027-06-12 10:41:43 is 34298378.239156829 s in the future
+/usr/bin/tar: ./usr/share/man/it: time stamp 2027-06-12 10:41:43 is 34298378.239022379 s in the future
+/usr/bin/tar: ./usr/share/man/pl: time stamp 2027-06-12 10:41:45 is 34298380.238937332 s in the future
+/usr/bin/tar: ./usr/share/man/es: time stamp 2027-06-12 10:41:43 is 34298378.238815225 s in the future
+/usr/bin/tar: ./usr/lib/bfd-plugins: time stamp 2027-06-12 10:56:29 is 34299264.229091682 s in the future
+/usr/bin/tar: ./usr/lib/apt/planners: time stamp 2027-06-12 10:54:36 is 34299151.22904868 s in the future
+/usr/bin/tar: ./usr/lib/apt: time stamp 2027-06-12 10:54:36 is 34299151.229002348 s in the future
+/usr/bin/tar: ./usr/lib/i386-linux-gnu/perl/cross-config-5.40.1: time stamp 2027-06-12 10:59:41 is 34299456.228969326 s in the future
+/usr/bin/tar: ./usr/lib/i386-linux-gnu/perl: time stamp 2027-06-12 10:59:41 is 34299456.228935972 s in the future
+/usr/bin/tar: ./usr/lib/compat-ld: time stamp 2027-06-12 10:54:37 is 34299152.228880863 s in the future
+/usr/bin/tar: ./usr/lib/gcc/i686-linux-gnu: time stamp 2027-06-12 10:56:48 is 34299283.228825122 s in the future
+/usr/bin/tar: ./usr/lib/gcc: time stamp 2027-06-12 10:56:48 is 34299283.228791564 s in the future
+/usr/bin/tar: ./usr: time stamp 2027-06-12 10:43:43 is 34298498.22871065 s in the future
+/usr/bin/tar: ./etc/systemd/system: time stamp 2027-06-12 10:44:43 is 34298558.228631639 s in the future
 I: copying local configuration
 W: --override-config is not set; not updating apt.conf Read the manpage for details.
 I: mounting /proc filesystem
@@ -23,54 +822,86 @@
 dpkg-source: info: unpacking libbeam-java_1.3.9-1.debian.tar.xz
 I: Not using root during the build.
 I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/53457/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/100766/tmp/hooks/D01_modify_environment starting
+debug: Running on ionos16-i386.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 May 10 21:22 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/100766/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/100766/tmp/hooks/D02_print_environment starting
 I: set
-  BUILDDIR='/build/reproducible-path'
-  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
-  BUILDUSERNAME='pbuilder1'
-  BUILD_ARCH='i386'
-  DEBIAN_FRONTEND='noninteractive'
-  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 '
-  DISTRIBUTION='unstable'
-  HOME='/root'
-  HOST_ARCH='i386'
+  BASH=/bin/sh
+  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+  BASH_ALIASES=()
+  BASH_ARGC=()
+  BASH_ARGV=()
+  BASH_CMDS=()
+  BASH_LINENO=([0]="12" [1]="0")
+  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+  BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu")
+  BASH_VERSION='5.2.37(1)-release'
+  BUILDDIR=/build/reproducible-path
+  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+  BUILDUSERNAME=pbuilder2
+  BUILD_ARCH=i386
+  DEBIAN_FRONTEND=noninteractive
+  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 '
+  DIRSTACK=()
+  DISTRIBUTION=unstable
+  EUID=0
+  FUNCNAME=([0]="Echo" [1]="main")
+  GROUPS=()
+  HOME=/root
+  HOSTNAME=i-capture-the-hostname
+  HOSTTYPE=i686
+  HOST_ARCH=i386
   IFS=' 	
   '
-  INVOCATION_ID='ee8378b4b39d4fcfa1980437f5f6fc3d'
-  LANG='C'
-  LANGUAGE='en_US:en'
-  LC_ALL='C'
-  LD_LIBRARY_PATH='/usr/lib/libeatmydata'
-  LD_PRELOAD='libeatmydata.so'
-  MAIL='/var/mail/root'
-  OPTIND='1'
-  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
-  PBCURRENTCOMMANDLINEOPERATION='build'
-  PBUILDER_OPERATION='build'
-  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
-  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
-  PBUILDER_SYSCONFDIR='/etc'
-  PPID='53457'
-  PS1='# '
-  PS2='> '
+  INVOCATION_ID=acdc73ec61c3441eac9a01d7b1be47e9
+  LANG=C
+  LANGUAGE=de_CH:de
+  LC_ALL=C
+  LD_LIBRARY_PATH=/usr/lib/libeatmydata
+  LD_PRELOAD=libeatmydata.so
+  MACHTYPE=i686-pc-linux-gnu
+  MAIL=/var/mail/root
+  OPTERR=1
+  OPTIND=1
+  OSTYPE=linux-gnu
+  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+  PBCURRENTCOMMANDLINEOPERATION=build
+  PBUILDER_OPERATION=build
+  PBUILDER_PKGDATADIR=/usr/share/pbuilder
+  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+  PBUILDER_SYSCONFDIR=/etc
+  PIPESTATUS=([0]="0")
+  POSIXLY_CORRECT=y
+  PPID=100766
   PS4='+ '
-  PWD='/'
-  SHELL='/bin/bash'
-  SHLVL='2'
-  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Vnqp96AP/pbuilderrc_aZLx --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Vnqp96AP/b1 --logfile b1/build.log libbeam-java_1.3.9-1.dsc'
-  SUDO_GID='112'
-  SUDO_UID='107'
-  SUDO_USER='jenkins'
-  TERM='unknown'
-  TZ='/usr/share/zoneinfo/Etc/GMT+12'
-  USER='root'
-  _='/usr/bin/systemd-run'
-  http_proxy='http://46.16.76.132:3128'
+  PWD=/
+  SHELL=/bin/bash
+  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+  SHLVL=3
+  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Vnqp96AP/pbuilderrc_Qijg --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Vnqp96AP/b2 --logfile b2/build.log libbeam-java_1.3.9-1.dsc'
+  SUDO_GID=112
+  SUDO_UID=107
+  SUDO_USER=jenkins
+  TERM=unknown
+  TZ=/usr/share/zoneinfo/Etc/GMT-14
+  UID=0
+  USER=root
+  _='I: set'
+  http_proxy=http://213.165.73.152:3128
 I: uname -a
-  Linux ionos12-i386 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) x86_64 GNU/Linux
+  Linux i-capture-the-hostname 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) x86_64 GNU/Linux
 I: ls -l /bin
-  lrwxrwxrwx 1 root root 7 Mar  4 11:20 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/53457/tmp/hooks/D02_print_environment finished
+  lrwxrwxrwx 1 root root 7 Mar  4  2025 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/100766/tmp/hooks/D02_print_environment finished
  -> Attempting to satisfy build-dependencies
  -> Creating pbuilder-satisfydepends-dummy package
 Package: pbuilder-satisfydepends-dummy
@@ -404,7 +1235,7 @@
 Get: 284 http://deb.debian.org/debian unstable/main i386 maven-repo-helper all 1.11 [142 kB]
 Get: 285 http://deb.debian.org/debian unstable/main i386 unzip i386 6.0-29 [173 kB]
 Get: 286 http://deb.debian.org/debian unstable/main i386 maven-debian-helper all 2.6.7 [108 kB]
-Fetched 268 MB in 4s (76.1 MB/s)
+Fetched 268 MB in 4s (64.0 MB/s)
 Preconfiguring packages ...
 Selecting previously unselected package libsystemd-shared:i386.
 (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19818 files and directories currently installed.)
@@ -1780,7 +2611,11 @@
 Building tag database...
  -> Finished parsing the build-deps
 I: Building the package
-I: Running cd /build/reproducible-path/libbeam-java-1.3.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../libbeam-java_1.3.9-1_source.changes
+I: user script /srv/workspace/pbuilder/100766/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for unstable
+I: user script /srv/workspace/pbuilder/100766/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/libbeam-java-1.3.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../libbeam-java_1.3.9-1_source.changes
 dpkg-buildpackage: info: source package libbeam-java
 dpkg-buildpackage: info: source version 1.3.9-1
 dpkg-buildpackage: info: source distribution unstable
@@ -1924,15 +2759,15 @@
 [INFO] ------------------------------------------------------------------------
 [INFO] Reactor Summary for beam 1.3.9:
 [INFO] 
-[INFO] beam ............................................... SUCCESS [  0.006 s]
-[INFO] beam-core .......................................... SUCCESS [  8.172 s]
-[INFO] beam-func .......................................... SUCCESS [  0.982 s]
-[INFO] beam-exec .......................................... SUCCESS [  0.394 s]
+[INFO] beam ............................................... SUCCESS [  0.002 s]
+[INFO] beam-core .......................................... SUCCESS [  3.496 s]
+[INFO] beam-func .......................................... SUCCESS [  0.426 s]
+[INFO] beam-exec .......................................... SUCCESS [  0.180 s]
 [INFO] ------------------------------------------------------------------------
 [INFO] BUILD SUCCESS
 [INFO] ------------------------------------------------------------------------
-[INFO] Total time:  9.774 s
-[INFO] Finished at: 2025-04-07T14:57:37Z
+[INFO] Total time:  4.210 s
+[INFO] Finished at: 2026-05-10T21:22:50Z
 [INFO] ------------------------------------------------------------------------
    dh_auto_test
 	/usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/build/reproducible-path/libbeam-java-1.3.9 -Dclassworlds.conf=/etc/maven/m2-debian.conf org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/build/reproducible-path/libbeam-java-1.3.9/debian -Dmaven.repo.local=/build/reproducible-path/libbeam-java-1.3.9/debian/maven-repo --batch-mode test
@@ -1976,51 +2811,47 @@
 [INFO] -------------------------------------------------------
 [INFO]  T E S T S
 [INFO] -------------------------------------------------------
-[INFO] Running uk.ac.ebi.beam.ParsingAtomChargeTest
-[INFO] Tests run: 20, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.082 s - in uk.ac.ebi.beam.ParsingAtomChargeTest
-[INFO] Running uk.ac.ebi.beam.ArbitraryMatchingTest
-[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in uk.ac.ebi.beam.ArbitraryMatchingTest
-[INFO] Running uk.ac.ebi.beam.AtomBuilderTest
-[INFO] Tests run: 31, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.018 s - in uk.ac.ebi.beam.AtomBuilderTest
-[INFO] Running uk.ac.ebi.beam.AtomCentricDBConfigTest
-[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.AtomCentricDBConfigTest
 [INFO] Running uk.ac.ebi.beam.GeneratorTest
-[INFO] Tests run: 33, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.029 s - in uk.ac.ebi.beam.GeneratorTest
-[INFO] Running uk.ac.ebi.beam.IntStackTest
-[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in uk.ac.ebi.beam.IntStackTest
-[INFO] Running uk.ac.ebi.beam.UnionFindTest
-[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.UnionFindTest
-[INFO] Running uk.ac.ebi.beam.ParsingHydrogenCountTest
-[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.ParsingHydrogenCountTest
-[INFO] Running uk.ac.ebi.beam.MatchingTest
-[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.MatchingTest
+[INFO] Tests run: 33, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.08 s - in uk.ac.ebi.beam.GeneratorTest
+[INFO] Running uk.ac.ebi.beam.ParsingAtomClassTest
+[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.ParsingAtomClassTest
 [INFO] Running uk.ac.ebi.beam.LocaliseTest
-[INFO] Tests run: 79, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.06 s - in uk.ac.ebi.beam.LocaliseTest
-[INFO] Running uk.ac.ebi.beam.IntSetTest
-[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.IntSetTest
-[INFO] Running uk.ac.ebi.beam.AtomTest
-[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.AtomTest
-[INFO] Running uk.ac.ebi.beam.ElementTest
-[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.ElementTest
+[INFO] Tests run: 79, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.03 s - in uk.ac.ebi.beam.LocaliseTest
+[INFO] Running uk.ac.ebi.beam.GraphBuilderTest
+[INFO] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in uk.ac.ebi.beam.GraphBuilderTest
+[INFO] Running uk.ac.ebi.beam.TopologyTest
+[INFO] Tests run: 27, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 s - in uk.ac.ebi.beam.TopologyTest
+[INFO] Running uk.ac.ebi.beam.BiconnectedComponentsTest
+[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.ebi.beam.BiconnectedComponentsTest
 [INFO] Running uk.ac.ebi.beam.BondTest
-[INFO] Tests run: 26, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in uk.ac.ebi.beam.BondTest
-[INFO] Running uk.ac.ebi.beam.OpenSMILESSpecificationTest
-[INFO] Tests run: 144, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.063 s - in uk.ac.ebi.beam.OpenSMILESSpecificationTest
-[INFO] Running uk.ac.ebi.beam.ValenceTest
-[INFO] Tests run: 60, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.022 s - in uk.ac.ebi.beam.ValenceTest
-[INFO] Running uk.ac.ebi.beam.ParsingBracketAtomTest
-[INFO] Tests run: 21, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 s - in uk.ac.ebi.beam.ParsingBracketAtomTest
-[INFO] Running uk.ac.ebi.beam.DaylightRoundTrippingTest
-[INFO] Tests run: 70, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.017 s - in uk.ac.ebi.beam.DaylightRoundTrippingTest
+[INFO] Tests run: 26, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in uk.ac.ebi.beam.BondTest
 [INFO] Running uk.ac.ebi.beam.GraphTest
 SMILES Warning: SquarePlanar without 5 explicit neighbours
-[INFO] Tests run: 48, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.958 s - in uk.ac.ebi.beam.GraphTest
+[INFO] Tests run: 48, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.516 s - in uk.ac.ebi.beam.GraphTest
 [INFO] Running uk.ac.ebi.beam.CharBufferTest
-[INFO] Tests run: 20, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.CharBufferTest
+[INFO] Tests run: 20, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.ebi.beam.CharBufferTest
+[INFO] Running uk.ac.ebi.beam.AtomCentricDBConfigTest
+[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.AtomCentricDBConfigTest
+[INFO] Running uk.ac.ebi.beam.OpenSMILESSpecificationTest
+[INFO] Tests run: 144, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.025 s - in uk.ac.ebi.beam.OpenSMILESSpecificationTest
+[INFO] Running uk.ac.ebi.beam.ParsingAtomChargeTest
+[INFO] Tests run: 20, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.ebi.beam.ParsingAtomChargeTest
+[INFO] Running uk.ac.ebi.beam.AtomTest
+[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.ebi.beam.AtomTest
+[INFO] Running uk.ac.ebi.beam.MaximumMatchingTest
+[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.ebi.beam.MaximumMatchingTest
+[INFO] Running uk.ac.ebi.beam.ParsingBracketAtomTest
+[INFO] Tests run: 21, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.ParsingBracketAtomTest
+[INFO] Running uk.ac.ebi.beam.ConfigurationTest
+[INFO] Tests run: 22, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.ebi.beam.ConfigurationTest
 [INFO] Running uk.ac.ebi.beam.EdgeTest
 [INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.ebi.beam.EdgeTest
+[INFO] Running uk.ac.ebi.beam.ParsingHydrogenCountTest
+[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.ParsingHydrogenCountTest
+[INFO] Running uk.ac.ebi.beam.ValenceTest
+[INFO] Tests run: 60, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 s - in uk.ac.ebi.beam.ValenceTest
 [INFO] Running uk.ac.ebi.beam.DaylightDelocalisationTest
-[INFO] Tests run: 95, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.044 s - in uk.ac.ebi.beam.DaylightDelocalisationTest
+[INFO] Tests run: 95, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.03 s - in uk.ac.ebi.beam.DaylightDelocalisationTest
 [INFO] Running uk.ac.ebi.beam.ParserTest
 SMILES Warning: Ignored invalid Cis/Trans on ring closure, should flip:
 SMILES Warning: C/C=C/1.C/1
@@ -2029,21 +2860,25 @@
 SMILES Warning: Ignored invalid Cis/Trans specification: 
 SMILES Warning: C/C=C(/C)/F
 SMILES Warning:       ^  ^
-[WARNING] Tests run: 49, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.003 s - in uk.ac.ebi.beam.ParserTest
-[INFO] Running uk.ac.ebi.beam.GraphBuilderTest
-[INFO] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.GraphBuilderTest
-[INFO] Running uk.ac.ebi.beam.BiconnectedComponentsTest
-[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.ebi.beam.BiconnectedComponentsTest
-[INFO] Running uk.ac.ebi.beam.MaximumMatchingTest
-[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.MaximumMatchingTest
-[INFO] Running uk.ac.ebi.beam.ConfigurationTest
-[INFO] Tests run: 22, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.ConfigurationTest
-[INFO] Running uk.ac.ebi.beam.ParsingAtomClassTest
-[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.ebi.beam.ParsingAtomClassTest
-[INFO] Running uk.ac.ebi.beam.TopologyTest
-[INFO] Tests run: 27, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.TopologyTest
+[WARNING] Tests run: 49, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.005 s - in uk.ac.ebi.beam.ParserTest
+[INFO] Running uk.ac.ebi.beam.ElementTest
+[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.ElementTest
+[INFO] Running uk.ac.ebi.beam.UnionFindTest
+[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.UnionFindTest
+[INFO] Running uk.ac.ebi.beam.IntStackTest
+[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.ebi.beam.IntStackTest
+[INFO] Running uk.ac.ebi.beam.AtomBuilderTest
+[INFO] Tests run: 31, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.ebi.beam.AtomBuilderTest
+[INFO] Running uk.ac.ebi.beam.ArbitraryMatchingTest
+[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.ebi.beam.ArbitraryMatchingTest
 [INFO] Running uk.ac.ebi.beam.ElectronAssignmentTest
 [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.ebi.beam.ElectronAssignmentTest
+[INFO] Running uk.ac.ebi.beam.DaylightRoundTrippingTest
+[INFO] Tests run: 70, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in uk.ac.ebi.beam.DaylightRoundTrippingTest
+[INFO] Running uk.ac.ebi.beam.MatchingTest
+[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.ebi.beam.MatchingTest
+[INFO] Running uk.ac.ebi.beam.IntSetTest
+[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.ebi.beam.IntSetTest
 [INFO] 
 [INFO] Results:
 [INFO] 
@@ -2072,28 +2907,28 @@
 [INFO] -------------------------------------------------------
 [INFO]  T E S T S
 [INFO] -------------------------------------------------------
-[INFO] Running uk.ac.ebi.beam.NormaliseDirectionalLabelsTest
-[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.172 s - in uk.ac.ebi.beam.NormaliseDirectionalLabelsTest
+[INFO] Running uk.ac.ebi.beam.ExplicitToImplicitTest
+[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.073 s - in uk.ac.ebi.beam.ExplicitToImplicitTest
+[INFO] Running uk.ac.ebi.beam.RemoveUpDownBondsTest
+[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 s - in uk.ac.ebi.beam.RemoveUpDownBondsTest
 [INFO] Running uk.ac.ebi.beam.FromTrigonalTopologyTest
-[INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.023 s - in uk.ac.ebi.beam.FromTrigonalTopologyTest
+[INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.013 s - in uk.ac.ebi.beam.FromTrigonalTopologyTest
 [INFO] Running uk.ac.ebi.beam.ImplicitToExplicitTest
-[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.94 s - in uk.ac.ebi.beam.ImplicitToExplicitTest
-[INFO] Running uk.ac.ebi.beam.RemoveUpDownBondsTest
-[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 s - in uk.ac.ebi.beam.RemoveUpDownBondsTest
+[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.515 s - in uk.ac.ebi.beam.ImplicitToExplicitTest
 [INFO] Running uk.ac.ebi.beam.FunctionsTest
 [INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 s - in uk.ac.ebi.beam.FunctionsTest
 [INFO] Running uk.ac.ebi.beam.ToSubsetAtomsTest
-[INFO] Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.011 s - in uk.ac.ebi.beam.ToSubsetAtomsTest
-[INFO] Running uk.ac.ebi.beam.BondBasedConfigurationTest
-[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.BondBasedConfigurationTest
-[INFO] Running uk.ac.ebi.beam.ExplicitToImplicitTest
-[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.ExplicitToImplicitTest
-[INFO] Running uk.ac.ebi.beam.AddDirectionalLabelsTest
-[INFO] Tests run: 22, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.02 s - in uk.ac.ebi.beam.AddDirectionalLabelsTest
+[INFO] Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.012 s - in uk.ac.ebi.beam.ToSubsetAtomsTest
 [INFO] Running uk.ac.ebi.beam.ToTrigonalTopologyTest
-[INFO] Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.01 s - in uk.ac.ebi.beam.ToTrigonalTopologyTest
+[INFO] Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 s - in uk.ac.ebi.beam.ToTrigonalTopologyTest
+[INFO] Running uk.ac.ebi.beam.AddDirectionalLabelsTest
+[INFO] Tests run: 22, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.01 s - in uk.ac.ebi.beam.AddDirectionalLabelsTest
 [INFO] Running uk.ac.ebi.beam.FromSubsetAtomsTest
-[INFO] Tests run: 22, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.013 s - in uk.ac.ebi.beam.FromSubsetAtomsTest
+[INFO] Tests run: 22, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 s - in uk.ac.ebi.beam.FromSubsetAtomsTest
+[INFO] Running uk.ac.ebi.beam.BondBasedConfigurationTest
+[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.ebi.beam.BondBasedConfigurationTest
+[INFO] Running uk.ac.ebi.beam.NormaliseDirectionalLabelsTest
+[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 s - in uk.ac.ebi.beam.NormaliseDirectionalLabelsTest
 [INFO] 
 [INFO] Results:
 [INFO] 
@@ -2122,15 +2957,15 @@
 [INFO] ------------------------------------------------------------------------
 [INFO] Reactor Summary for beam 1.3.9:
 [INFO] 
-[INFO] beam ............................................... SUCCESS [  0.004 s]
-[INFO] beam-core .......................................... SUCCESS [ 33.628 s]
-[INFO] beam-func .......................................... SUCCESS [ 32.073 s]
-[INFO] beam-exec .......................................... SUCCESS [  0.055 s]
+[INFO] beam ............................................... SUCCESS [  0.002 s]
+[INFO] beam-core .......................................... SUCCESS [ 32.055 s]
+[INFO] beam-func .......................................... SUCCESS [ 31.275 s]
+[INFO] beam-exec .......................................... SUCCESS [  0.026 s]
 [INFO] ------------------------------------------------------------------------
 [INFO] BUILD SUCCESS
 [INFO] ------------------------------------------------------------------------
-[INFO] Total time:  01:05 min
-[INFO] Finished at: 2025-04-07T14:58:45Z
+[INFO] Total time:  01:03 min
+[INFO] Finished at: 2026-05-10T21:23:55Z
 [INFO] ------------------------------------------------------------------------
    create-stamp debian/debhelper-build-stamp
    dh_prep
@@ -2200,15 +3035,15 @@
 [INFO] ------------------------------------------------------------------------
 [INFO] Reactor Summary for beam 1.3.9:
 [INFO] 
-[INFO] beam ............................................... SUCCESS [  0.529 s]
-[INFO] beam-core .......................................... SUCCESS [  0.057 s]
-[INFO] beam-func .......................................... SUCCESS [  0.035 s]
-[INFO] beam-exec .......................................... SUCCESS [  0.032 s]
+[INFO] beam ............................................... SUCCESS [  0.281 s]
+[INFO] beam-core .......................................... SUCCESS [  0.030 s]
+[INFO] beam-func .......................................... SUCCESS [  0.019 s]
+[INFO] beam-exec .......................................... SUCCESS [  0.019 s]
 [INFO] ------------------------------------------------------------------------
 [INFO] BUILD SUCCESS
 [INFO] ------------------------------------------------------------------------
-[INFO] Total time:  0.909 s
-[INFO] Finished at: 2025-04-07T14:58:49Z
+[INFO] Total time:  0.488 s
+[INFO] Finished at: 2026-05-10T21:23:56Z
 [INFO] ------------------------------------------------------------------------
 	mh_resolve_dependencies --non-interactive --offline --build -plibbeam-java --base-directory=/build/reproducible-path/libbeam-java-1.3.9 --non-explore
 Analysing pom.xml...
@@ -2240,12 +3075,14 @@
 dpkg-buildpackage: info: binary-only upload (no source included)
 dpkg-genchanges: info: including full source code in upload
 I: copying local configuration
+I: user script /srv/workspace/pbuilder/100766/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/100766/tmp/hooks/B01_cleanup finished
 I: unmounting dev/ptmx filesystem
 I: unmounting dev/pts filesystem
 I: unmounting dev/shm filesystem
 I: unmounting proc filesystem
 I: unmounting sys filesystem
 I: cleaning the build env 
-I: removing directory /srv/workspace/pbuilder/53457 and its subdirectories
-I: Current time: Mon Apr  7 02:58:56 -12 2025
-I: pbuilder-time-stamp: 1744037936
+I: removing directory /srv/workspace/pbuilder/100766 and its subdirectories
+I: Current time: Mon May 11 11:24:00 +14 2026
+I: pbuilder-time-stamp: 1778448240