Diff of the two buildlogs:
--
--- b1/build.log 2025-04-18 14:31:58.577458595 +0000
+++ b2/build.log 2025-04-18 14:32:52.616307358 +0000
@@ -1,6 +1,6 @@
I: pbuilder: network access will be disabled during build
-I: Current time: Fri Apr 18 02:31:28 -12 2025
-I: pbuilder-time-stamp: 1744986688
+I: Current time: Fri May 22 10:55:02 +14 2026
+I: pbuilder-time-stamp: 1779396902
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
@@ -25,54 +25,86 @@
dpkg-source: info: applying doc-typos.patch
I: Not using root during the build.
I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/60821/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/12505/tmp/hooks/D01_modify_environment starting
+debug: Running on ionos16-i386.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 May 21 20:55 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/12505/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/12505/tmp/hooks/D02_print_environment starting
I: set
- BUILDDIR='/build/reproducible-path'
- BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
- BUILDUSERNAME='pbuilder1'
- BUILD_ARCH='i386'
- DEBIAN_FRONTEND='noninteractive'
- DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=24 '
- DISTRIBUTION='unstable'
- HOME='/root'
- HOST_ARCH='i386'
+ BASH=/bin/sh
+ BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+ BASH_ALIASES=()
+ BASH_ARGC=()
+ BASH_ARGV=()
+ BASH_CMDS=()
+ BASH_LINENO=([0]="12" [1]="0")
+ BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+ BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+ BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu")
+ BASH_VERSION='5.2.37(1)-release'
+ BUILDDIR=/build/reproducible-path
+ BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+ BUILDUSERNAME=pbuilder2
+ BUILD_ARCH=i386
+ DEBIAN_FRONTEND=noninteractive
+ DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 '
+ DIRSTACK=()
+ DISTRIBUTION=unstable
+ EUID=0
+ FUNCNAME=([0]="Echo" [1]="main")
+ GROUPS=()
+ HOME=/root
+ HOSTNAME=i-capture-the-hostname
+ HOSTTYPE=i686
+ HOST_ARCH=i386
IFS='
'
- INVOCATION_ID='40bf1022741e4ce79a0a4e0f6b91af7b'
- LANG='C'
- LANGUAGE='en_US:en'
- LC_ALL='C'
- LD_LIBRARY_PATH='/usr/lib/libeatmydata'
- LD_PRELOAD='libeatmydata.so'
- MAIL='/var/mail/root'
- OPTIND='1'
- PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
- PBCURRENTCOMMANDLINEOPERATION='build'
- PBUILDER_OPERATION='build'
- PBUILDER_PKGDATADIR='/usr/share/pbuilder'
- PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
- PBUILDER_SYSCONFDIR='/etc'
- PPID='60821'
- PS1='# '
- PS2='> '
+ INVOCATION_ID=38c027c0253a4e2ca978cc109e4b16a4
+ LANG=C
+ LANGUAGE=de_CH:de
+ LC_ALL=C
+ LD_LIBRARY_PATH=/usr/lib/libeatmydata
+ LD_PRELOAD=libeatmydata.so
+ MACHTYPE=i686-pc-linux-gnu
+ MAIL=/var/mail/root
+ OPTERR=1
+ OPTIND=1
+ OSTYPE=linux-gnu
+ PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+ PBCURRENTCOMMANDLINEOPERATION=build
+ PBUILDER_OPERATION=build
+ PBUILDER_PKGDATADIR=/usr/share/pbuilder
+ PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+ PBUILDER_SYSCONFDIR=/etc
+ PIPESTATUS=([0]="0")
+ POSIXLY_CORRECT=y
+ PPID=12505
PS4='+ '
- PWD='/'
- SHELL='/bin/bash'
- SHLVL='2'
- SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.OSc1IW41/pbuilderrc_OVrk --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.OSc1IW41/b1 --logfile b1/build.log libbio-tools-run-alignment-tcoffee-perl_1.7.4-3.dsc'
- SUDO_GID='112'
- SUDO_UID='107'
- SUDO_USER='jenkins'
- TERM='unknown'
- TZ='/usr/share/zoneinfo/Etc/GMT+12'
- USER='root'
- _='/usr/bin/systemd-run'
- http_proxy='http://46.16.76.132:3128'
+ PWD=/
+ SHELL=/bin/bash
+ SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+ SHLVL=3
+ SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.OSc1IW41/pbuilderrc_otXL --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.OSc1IW41/b2 --logfile b2/build.log libbio-tools-run-alignment-tcoffee-perl_1.7.4-3.dsc'
+ SUDO_GID=112
+ SUDO_UID=107
+ SUDO_USER=jenkins
+ TERM=unknown
+ TZ=/usr/share/zoneinfo/Etc/GMT-14
+ UID=0
+ USER=root
+ _='I: set'
+ http_proxy=http://213.165.73.152:3128
I: uname -a
- Linux ionos12-i386 6.1.0-33-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.133-1 (2025-04-10) x86_64 GNU/Linux
+ Linux i-capture-the-hostname 6.1.0-33-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.133-1 (2025-04-10) x86_64 GNU/Linux
I: ls -l /bin
- lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/60821/tmp/hooks/D02_print_environment finished
+ lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/12505/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
@@ -161,7 +193,7 @@
Get: 39 http://deb.debian.org/debian unstable/main i386 libsub-uplevel-perl all 0.2800-3 [14.0 kB]
Get: 40 http://deb.debian.org/debian unstable/main i386 libtest-exception-perl all 0.43-3 [16.9 kB]
Get: 41 http://deb.debian.org/debian unstable/main i386 t-coffee i386 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 [1035 kB]
-Fetched 16.4 MB in 0s (123 MB/s)
+Fetched 16.4 MB in 0s (85.0 MB/s)
Preconfiguring packages ...
Selecting previously unselected package sensible-utils.
(Reading database ...
(Reading database ... 5%
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19827 files and directories currently installed.)
@@ -340,7 +372,11 @@
Building tag database...
-> Finished parsing the build-deps
I: Building the package
-I: Running cd /build/reproducible-path/libbio-tools-run-alignment-tcoffee-perl-1.7.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-tools-run-alignment-tcoffee-perl_1.7.4-3_source.changes
+I: user script /srv/workspace/pbuilder/12505/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for unstable
+I: user script /srv/workspace/pbuilder/12505/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/libbio-tools-run-alignment-tcoffee-perl-1.7.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbio-tools-run-alignment-tcoffee-perl_1.7.4-3_source.changes
dpkg-buildpackage: info: source package libbio-tools-run-alignment-tcoffee-perl
dpkg-buildpackage: info: source version 1.7.4-3
dpkg-buildpackage: info: source distribution unstable
@@ -363,13 +399,13 @@
Writing Makefile for Bio::Tools::Run::Alignment::TCoffee
Writing MYMETA.yml and MYMETA.json
dh_auto_build
- make -j24
+ make -j21
make[1]: Entering directory '/build/reproducible-path/libbio-tools-run-alignment-tcoffee-perl-1.7.4'
cp lib/Bio/Tools/Run/Alignment/TCoffee.pm blib/lib/Bio/Tools/Run/Alignment/TCoffee.pm
Manifying 1 pod document
make[1]: Leaving directory '/build/reproducible-path/libbio-tools-run-alignment-tcoffee-perl-1.7.4'
dh_auto_test
- make -j24 test TEST_VERBOSE=1
+ make -j21 test TEST_VERBOSE=1
make[1]: Entering directory '/build/reproducible-path/libbio-tools-run-alignment-tcoffee-perl-1.7.4'
PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t
t/00-compile.t ...........
@@ -382,7 +418,7 @@
t/author-pod-coverage.t .. skipped: these tests are for testing by the author
t/author-pod-syntax.t .... skipped: these tests are for testing by the author
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t/TCoffee.t ..............
ok 1 - An object of class 'Bio::Tools::Run::Alignment::TCoffee' isa 'Bio::Tools::Run::Alignment::TCoffee'
@@ -437,16 +473,16 @@
ok 24 - expect 13 or 14
ok 25 - expect 41 or 42
1..25
-rmdir /tmp/AubYJOXYAe
+rmdir /tmp/XzhwckgFLK
ok
All tests successful.
-Files=7, Tests=26, 9 wallclock secs ( 0.04 usr 0.00 sys + 5.86 cusr 3.44 csys = 9.34 CPU)
+Files=7, Tests=26, 10 wallclock secs ( 0.04 usr 0.00 sys + 6.28 cusr 3.94 csys = 10.26 CPU)
Result: PASS
make[1]: Leaving directory '/build/reproducible-path/libbio-tools-run-alignment-tcoffee-perl-1.7.4'
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install --destdir=debian/libbio-tools-run-alignment-tcoffee-perl/
- make -j24 install DESTDIR=/build/reproducible-path/libbio-tools-run-alignment-tcoffee-perl-1.7.4/debian/libbio-tools-run-alignment-tcoffee-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr
+ make -j21 install DESTDIR=/build/reproducible-path/libbio-tools-run-alignment-tcoffee-perl-1.7.4/debian/libbio-tools-run-alignment-tcoffee-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[1]: Entering directory '/build/reproducible-path/libbio-tools-run-alignment-tcoffee-perl-1.7.4'
Manifying 1 pod document
Installing /build/reproducible-path/libbio-tools-run-alignment-tcoffee-perl-1.7.4/debian/libbio-tools-run-alignment-tcoffee-perl/usr/share/perl5/Bio/Tools/Run/Alignment/TCoffee.pm
@@ -474,12 +510,14 @@
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
+I: user script /srv/workspace/pbuilder/12505/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/12505/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/60821 and its subdirectories
-I: Current time: Fri Apr 18 02:31:58 -12 2025
-I: pbuilder-time-stamp: 1744986718
+I: removing directory /srv/workspace/pbuilder/12505 and its subdirectories
+I: Current time: Fri May 22 10:55:51 +14 2026
+I: pbuilder-time-stamp: 1779396951