Diff of the two buildlogs: -- --- b1/build.log 2025-02-03 14:05:54.421059047 +0000 +++ b2/build.log 2025-02-03 14:07:13.669484935 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Mar 8 08:28:19 -12 2026 -I: pbuilder-time-stamp: 1773001699 +I: Current time: Tue Feb 4 04:05:57 +14 2025 +I: pbuilder-time-stamp: 1738591557 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -33,54 +33,86 @@ dpkg-source: info: applying fix-numerous-format-warnings I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/78231/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/29228/tmp/hooks/D01_modify_environment starting +debug: Running on ionos12-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 3 14:06 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/29228/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/29228/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='e7553dcac6174941a386c10489a36099' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='78231' - PS1='# ' - PS2='> ' + INVOCATION_ID=adbc24596ecf4c369c668acc8f1147d6 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=29228 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.swqsr4cH/pbuilderrc_bM95 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.swqsr4cH/b1 --logfile b1/build.log lutefisk_1.0.7+dfsg-7.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.swqsr4cH/pbuilderrc_PNqz --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.swqsr4cH/b2 --logfile b2/build.log lutefisk_1.0.7+dfsg-7.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos6-i386 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/78231/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/29228/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -146,7 +178,7 @@ Get: 28 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 debhelper all 13.24.1 [920 kB] -Fetched 20.8 MB in 0s (97.1 MB/s) +Fetched 20.8 MB in 1s (27.8 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19826 files and directories currently installed.) @@ -286,7 +318,11 @@ fakeroot is already the newest version (1.37-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/lutefisk-1.0.7+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lutefisk_1.0.7+dfsg-7_source.changes +I: user script /srv/workspace/pbuilder/29228/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/29228/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/lutefisk-1.0.7+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lutefisk_1.0.7+dfsg-7_source.changes dpkg-buildpackage: info: source package lutefisk dpkg-buildpackage: info: source version 1.0.7+dfsg-7 dpkg-buildpackage: info: source distribution unstable @@ -325,7 +361,7 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/lutefisk-1.0.7+dfsg' dh_auto_build --builddirectory=/build/reproducible-path/lutefisk-1.0.7+dfsg/debian/build -- all - cd debian/build && make -j22 "INSTALL=install --strip-program=true" all + cd debian/build && make -j10 "INSTALL=install --strip-program=true" all make[2]: Entering directory '/build/reproducible-path/lutefisk-1.0.7+dfsg/debian/build' gcc -O -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lutefisk-1.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__LINUX -c LutefiskGlobalDeclarations.c gcc -O -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lutefisk-1.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__LINUX -c LutefiskMain.c @@ -338,11 +374,6 @@ gcc -O -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lutefisk-1.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__LINUX -c LutefiskXCorr.c gcc -O -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lutefisk-1.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__LINUX -c LutefiskFourier.c gcc -O -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lutefisk-1.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__LINUX -c LutefiskGetAutoTag.c -gcc -O -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lutefisk-1.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__LINUX -c ListRoutines.c -LutefiskGetAutoTag.c: In function 'ComposePeptideString': -LutefiskGetAutoTag.c:2021:25: warning: embedded '\0' in format [-Wformat-contains-nul] - 2021 | p+= sprintf(p, "\0"); /* NULL terminate the string */ - | ^~ LutefiskScore.c: In function 'GetDatabaseSeq': LutefiskScore.c:281:25: warning: embedded '\0' in format [-Wformat-contains-nul] 281 | p+= sprintf(p, "\0"); /* NULL terminate the string */ @@ -351,15 +382,6 @@ LutefiskScore.c:417:25: warning: embedded '\0' in format [-Wformat-contains-nul] 417 | p+= sprintf(p, "\0"); /* NULL terminate the string */ | ^~ -LutefiskFourier.c: In function 'CrossCorrelate': -LutefiskFourier.c:363:17: warning: 'twofft' accessing 4 bytes in a region of size 0 [-Wstringop-overflow=] - 363 | twofft(array1, array2, workSpace, result, n); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -LutefiskFourier.c:363:17: note: referencing argument 3 of type 'float[0]' -LutefiskFourier.c:363:17: note: referencing argument 4 of type 'float[0]' -LutefiskFourier.c:440:13: note: in a call to function 'twofft' - 440 | static void twofft(REAL_4 *array1, REAL_4 *array2, REAL_4 *fft1, REAL_4 *fft2, UINT_4 n) - | ^~~~~~ LutefiskMain.c: In function 'BuildPgmState': LutefiskMain.c:650:67: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'unsigned int' [-Wformat=] 650 | fprintf(stderr, "Argument filename max length = %lu caracters", sizeof(gParam.outputFile) - 1 ); @@ -400,11 +422,16 @@ LutefiskMain.c:865:71: warning: embedded '\0' in format [-Wformat-contains-nul] 865 | sprintf(gParam.outputFile + strlen(gParam.outputFile), "%d\0", fileCount++); | ^~ -LutefiskScore.c: In function 'PrintScoreDetailsToXLFile': +LutefiskFourier.c: In function 'CrossCorrelate': +LutefiskFourier.c:363:17: warning: 'twofft' accessing 4 bytes in a region of size 0 [-Wstringop-overflow=] + 363 | twofft(array1, array2, workSpace, result, n); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +LutefiskFourier.c:363:17: note: referencing argument 3 of type 'float[0]' +LutefiskFourier.c:363:17: note: referencing argument 4 of type 'float[0]' +LutefiskFourier.c:440:13: note: in a call to function 'twofft' + 440 | static void twofft(REAL_4 *array1, REAL_4 *array2, REAL_4 *fft1, REAL_4 *fft2, UINT_4 n) + | ^~~~~~ LutefiskMain.c: In function 'SystemCheck': -LutefiskScore.c:11586:57: warning: embedded '\0' in format [-Wformat-contains-nul] -11586 | sprintf(fileName + strlen(fileName), "%d\0", fileCount++); - | ^~ LutefiskMain.c:2536:30: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'unsigned int' [-Wformat=] 2536 | printf("REAL_4 is %lu bytes instead of 4.\n", sizeof(REAL_4)); | ~~^ ~~~~~~~~~~~~~~ @@ -453,6 +480,15 @@ | | | | long unsigned int unsigned int | %u +LutefiskGetAutoTag.c: In function 'ComposePeptideString': +LutefiskGetAutoTag.c:2021:25: warning: embedded '\0' in format [-Wformat-contains-nul] + 2021 | p+= sprintf(p, "\0"); /* NULL terminate the string */ + | ^~ +LutefiskScore.c: In function 'PrintScoreDetailsToXLFile': +LutefiskScore.c:11586:57: warning: embedded '\0' in format [-Wformat-contains-nul] +11586 | sprintf(fileName + strlen(fileName), "%d\0", fileCount++); + | ^~ +gcc -O -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lutefisk-1.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__LINUX -c ListRoutines.c gcc -O LutefiskGlobalDeclarations.o LutefiskMain.o LutefiskGetCID.o LutefiskHaggis.o LutefiskMakeGraph.o LutefiskSummedNode.o LutefiskSubseqMaker.o LutefiskScore.o LutefiskXCorr.o LutefiskFourier.o LutefiskGetAutoTag.o ListRoutines.o -lm -o lutefisk make[2]: Leaving directory '/build/reproducible-path/lutefisk-1.0.7+dfsg/debian/build' make[1]: Leaving directory '/build/reproducible-path/lutefisk-1.0.7+dfsg' @@ -479,12 +515,12 @@ debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/lutefisk-1.0.7+dfsg' dh_installchangelogs HISTORY.txt - install -m0755 -d debian/lutefisk-doc/usr/share/doc/lutefisk-doc - install -p -m0644 debian/.debhelper/generated/lutefisk-doc/dh_installchangelogs.dch.trimmed debian/lutefisk-doc/usr/share/doc/lutefisk-doc/changelog.Debian - install -p -m0644 HISTORY.txt debian/lutefisk-doc/usr/share/doc/lutefisk-doc/changelog install -m0755 -d debian/lutefisk/usr/share/doc/lutefisk install -p -m0644 debian/.debhelper/generated/lutefisk/dh_installchangelogs.dch.trimmed debian/lutefisk/usr/share/doc/lutefisk/changelog.Debian install -p -m0644 HISTORY.txt debian/lutefisk/usr/share/doc/lutefisk/changelog + install -m0755 -d debian/lutefisk-doc/usr/share/doc/lutefisk-doc + install -p -m0644 debian/.debhelper/generated/lutefisk-doc/dh_installchangelogs.dch.trimmed debian/lutefisk-doc/usr/share/doc/lutefisk-doc/changelog.Debian + install -p -m0644 HISTORY.txt debian/lutefisk-doc/usr/share/doc/lutefisk-doc/changelog make[1]: Leaving directory '/build/reproducible-path/lutefisk-1.0.7+dfsg' dh_installexamples install -m0755 -d debian/lutefisk/usr/share/doc/lutefisk/examples @@ -510,10 +546,10 @@ dh_compress cd debian/lutefisk cd debian/lutefisk-doc - chmod a-x usr/share/doc/lutefisk-doc/changelog usr/share/doc/lutefisk-doc/changelog.Debian usr/share/doc/lutefisk-doc/docs/LCMSTrap_Lutefisk.params usr/share/doc/lutefisk-doc/docs/PSD_Lutefisk.params usr/share/doc/lutefisk-doc/docs/Qtof_Lutefisk.params usr/share/man/man7/lutefisk-doc.7 chmod a-x usr/share/doc/lutefisk/changelog usr/share/doc/lutefisk/changelog.Debian usr/share/man/man1/lutefisk.1 - gzip -9nf usr/share/doc/lutefisk/changelog usr/share/doc/lutefisk/changelog.Debian usr/share/man/man1/lutefisk.1 + chmod a-x usr/share/doc/lutefisk-doc/changelog usr/share/doc/lutefisk-doc/changelog.Debian usr/share/doc/lutefisk-doc/docs/LCMSTrap_Lutefisk.params usr/share/doc/lutefisk-doc/docs/PSD_Lutefisk.params usr/share/doc/lutefisk-doc/docs/Qtof_Lutefisk.params usr/share/man/man7/lutefisk-doc.7 gzip -9nf usr/share/doc/lutefisk-doc/changelog usr/share/doc/lutefisk-doc/changelog.Debian usr/share/doc/lutefisk-doc/docs/LCMSTrap_Lutefisk.params usr/share/doc/lutefisk-doc/docs/PSD_Lutefisk.params usr/share/doc/lutefisk-doc/docs/Qtof_Lutefisk.params usr/share/man/man7/lutefisk-doc.7 + gzip -9nf usr/share/doc/lutefisk/changelog usr/share/doc/lutefisk/changelog.Debian usr/share/man/man1/lutefisk.1 cd '/build/reproducible-path/lutefisk-1.0.7+dfsg' cd '/build/reproducible-path/lutefisk-1.0.7+dfsg' dh_fixperms @@ -564,8 +600,8 @@ dpkg-gencontrol -plutefisk -ldebian/changelog -Tdebian/lutefisk.substvars -cdebian/control -Pdebian/lutefisk chmod 0644 -- debian/lutefisk/DEBIAN/control dh_md5sums - install -m0755 -d debian/lutefisk/DEBIAN install -m0755 -d debian/lutefisk-doc/DEBIAN + install -m0755 -d debian/lutefisk/DEBIAN cd debian/lutefisk-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/lutefisk >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/lutefisk-doc/DEBIAN/md5sums @@ -587,12 +623,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/29228/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/29228/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/78231 and its subdirectories -I: Current time: Sun Mar 8 08:28:53 -12 2026 -I: pbuilder-time-stamp: 1773001733 +I: removing directory /srv/workspace/pbuilder/29228 and its subdirectories +I: Current time: Tue Feb 4 04:07:12 +14 2025 +I: pbuilder-time-stamp: 1738591632