Diff of the two buildlogs: -- --- b1/build.log 2025-03-08 04:21:28.180749875 +0000 +++ b2/build.log 2025-03-08 04:26:38.738796520 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Apr 9 22:41:41 -12 2026 -I: pbuilder-time-stamp: 1775817701 +I: Current time: Sat Mar 8 18:21:36 +14 2025 +I: pbuilder-time-stamp: 1741407696 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,54 +26,86 @@ dpkg-source: info: applying use_blastdb_format_4.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/105419/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/50278/tmp/hooks/D01_modify_environment starting +debug: Running on ionos2-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 8 04:22 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/50278/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/50278/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='5caa100b9f68483083a066bfa58892c9' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='105419' - PS1='# ' - PS2='> ' + INVOCATION_ID=f6a4bd2df1de43dda4d83967213cccb7 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=50278 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.kCl1wIuf/pbuilderrc_uvnG --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.kCl1wIuf/b1 --logfile b1/build.log metastudent-data_2.0.1-8.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.kCl1wIuf/pbuilderrc_FUY0 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.kCl1wIuf/b2 --logfile b2/build.log metastudent-data_2.0.1-8.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos16-i386 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/105419/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/50278/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -169,7 +201,7 @@ Get: 53 http://deb.debian.org/debian unstable/main i386 ncbi-data all 6.1.20170106+dfsg2-5 [3537 kB] Get: 54 http://deb.debian.org/debian unstable/main i386 ncbi-blast+ i386 2.16.0+ds-6+b1 [16.6 MB] Get: 55 http://deb.debian.org/debian unstable/main i386 ncbi-blast+-legacy all 2.16.0+ds-6 [10.4 kB] -Fetched 49.1 MB in 1s (69.4 MB/s) +Fetched 49.1 MB in 1s (37.3 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19769 files and directories currently installed.) @@ -366,8 +398,8 @@ Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Apr 10 10:42:21 UTC 2026. -Universal Time is now: Fri Apr 10 10:42:21 UTC 2026. +Local time is now: Sat Mar 8 04:22:27 UTC 2025. +Universal Time is now: Sat Mar 8 04:22:27 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -418,7 +450,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/metastudent-data-2.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../metastudent-data_2.0.1-8_source.changes +I: user script /srv/workspace/pbuilder/50278/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/50278/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/metastudent-data-2.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../metastudent-data_2.0.1-8_source.changes dpkg-buildpackage: info: source package metastudent-data dpkg-buildpackage: info: source version 2.0.1-8 dpkg-buildpackage: info: source distribution unstable @@ -452,7 +488,7 @@ configure: creating ./config.status config.status: creating Makefile dh_auto_build - make -j22 + make -j10 make[1]: Entering directory '/build/reproducible-path/metastudent-data-2.0.1' mkdir -p dataset_201401/BPO/ && \ makeblastdb -dbtype prot -in "dataset_201401/BPO/goasp.fasta" -out "dataset_201401/BPO/goasp.fasta" -blastdb_version 4 @@ -462,35 +498,35 @@ makeblastdb -dbtype prot -in "dataset_201401/CCO/goasp.fasta" -out "dataset_201401/CCO/goasp.fasta" -blastdb_version 4 -Building a new DB, current time: 04/10/2026 10:42:31 +Building a new DB, current time: 03/08/2025 04:22:39 -Building a new DB, current time: 04/10/2026 10:42:31 +Building a new DB, current time: 03/08/2025 04:22:39 +New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/BPO/goasp.fasta +New DB title: dataset_201401/BPO/goasp.fasta +Sequence type: Protein -Building a new DB, current time: 04/10/2026 10:42:31 -New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/MFO/goasp.fasta +Building a new DB, current time: 03/08/2025 04:22:39 New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/CCO/goasp.fasta -New DB title: dataset_201401/MFO/goasp.fasta -New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/BPO/goasp.fasta New DB title: dataset_201401/CCO/goasp.fasta Sequence type: Protein -New DB title: dataset_201401/BPO/goasp.fasta -Sequence type: Protein +New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/MFO/goasp.fasta +New DB title: dataset_201401/MFO/goasp.fasta Sequence type: Protein Keep MBits: T Keep MBits: T -Keep MBits: T Maximum file size: 3000000000B +Keep MBits: T Maximum file size: 3000000000B Maximum file size: 3000000000B -Adding sequences from FASTA; added 392822 sequences in 13.673 seconds. +Adding sequences from FASTA; added 392822 sequences in 34.578 seconds. -Adding sequences from FASTA; added 459503 sequences in 16.8452 seconds. +Adding sequences from FASTA; added 486000 sequences in 43.7524 seconds. -Adding sequences from FASTA; added 486000 sequences in 16.9638 seconds. +Adding sequences from FASTA; added 459503 sequences in 44.3891 seconds. make[1]: Leaving directory '/build/reproducible-path/metastudent-data-2.0.1' @@ -498,7 +534,7 @@ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/metastudent-data/ - make -j22 install DESTDIR=/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data AM_UPDATE_INFO_DIR=no + make -j10 install DESTDIR=/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/metastudent-data-2.0.1' make[2]: Entering directory '/build/reproducible-path/metastudent-data-2.0.1' make[2]: Nothing to be done for 'install-exec-am'. @@ -530,12 +566,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/50278/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/50278/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/105419 and its subdirectories -I: Current time: Thu Apr 9 22:44:25 -12 2026 -I: pbuilder-time-stamp: 1775817865 +I: removing directory /srv/workspace/pbuilder/50278 and its subdirectories +I: Current time: Sat Mar 8 18:26:37 +14 2025 +I: pbuilder-time-stamp: 1741407997