Diff of the two buildlogs: -- --- b1/build.log 2025-03-13 17:28:11.119995825 +0000 +++ b2/build.log 2025-03-13 17:30:38.245392509 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Mar 13 05:23:45 -12 2025 -I: pbuilder-time-stamp: 1741886625 +I: Current time: Thu Apr 16 13:51:12 +14 2026 +I: pbuilder-time-stamp: 1776297072 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -30,54 +30,86 @@ dpkg-source: info: applying python-3.12.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/16115/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/72230/tmp/hooks/D01_modify_environment starting +debug: Running on ionos6-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 15 23:51 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/72230/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/72230/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='db50cf211c8d4c83b1ce5e54862ef464' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='16115' - PS1='# ' - PS2='> ' + INVOCATION_ID=da764d2bdc1e4363b12b663bfad00cfb + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=72230 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Az7zAa9m/pbuilderrc_nmad --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Az7zAa9m/b1 --logfile b1/build.log python-csb_1.2.5+dfsg-10.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Az7zAa9m/pbuilderrc_eHCx --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Az7zAa9m/b2 --logfile b2/build.log python-csb_1.2.5+dfsg-10.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos2-i386 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/16115/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/72230/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -257,7 +289,7 @@ Get: 130 http://deb.debian.org/debian unstable/main i386 python3-pyparsing all 3.1.2-1 [146 kB] Get: 131 http://deb.debian.org/debian unstable/main i386 python3-packaging all 24.2-1 [55.3 kB] Get: 132 http://deb.debian.org/debian unstable/main i386 python3-matplotlib i386 3.8.3-7+b1 [23.0 MB] -Fetched 111 MB in 2s (73.5 MB/s) +Fetched 111 MB in 3s (35.5 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19769 files and directories currently installed.) @@ -698,8 +730,8 @@ Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Mar 13 17:24:39 UTC 2025. -Universal Time is now: Thu Mar 13 17:24:39 UTC 2025. +Local time is now: Wed Apr 15 23:51:42 UTC 2026. +Universal Time is now: Wed Apr 15 23:51:42 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... @@ -817,7 +849,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-csb-1.2.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-csb_1.2.5+dfsg-10_source.changes +I: user script /srv/workspace/pbuilder/72230/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/72230/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-csb-1.2.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-csb_1.2.5+dfsg-10_source.changes dpkg-buildpackage: info: source package python-csb dpkg-buildpackage: info: source version 1.2.5+dfsg-10 dpkg-buildpackage: info: source distribution unstable @@ -863,145 +899,145 @@ creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb copying csb/build.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb copying csb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric -copying csb/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric -copying csb/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test -copying csb/test/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test -copying csb/test/app.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio -copying csb/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps +copying csb/apps/csfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps +copying csb/apps/bfite.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps copying csb/apps/hhfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps +copying csb/apps/promix.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps copying csb/apps/precision.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps copying csb/apps/hhsearch.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps -copying csb/apps/buildhmm.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps +copying csb/apps/bfit.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps copying csb/apps/embd.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps -copying csb/apps/promix.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps copying csb/apps/helloworld.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps -copying csb/apps/csfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps -copying csb/apps/bfit.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps -copying csb/apps/bfite.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps copying csb/apps/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps +copying csb/apps/buildhmm.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/core +copying csb/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/core +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io +copying csb/io/tsv.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io +copying csb/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io +copying csb/io/plots.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio +copying csb/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric +copying csb/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric +copying csb/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test +copying csb/test/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test +copying csb/test/app.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics -copying csb/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics -copying csb/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics copying csb/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics -copying csb/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics -copying csb/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics +copying csb/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics copying csb/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/core -copying csb/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/core +copying csb/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics +copying csb/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics +copying csb/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech copying csb/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech copying csb/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech copying csb/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io -copying csb/io/plots.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io -copying csb/io/tsv.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io -copying csb/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr +copying csb/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence +copying csb/bio/sequence/alignment.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence +copying csb/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/psipred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/procheck.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/wwpdb.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/hhpred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/cs.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/noe.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/fasta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/mrc.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/dssp.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/clans.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/whatif.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/svg.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/vasco.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments +copying csb/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments +copying csb/bio/fragments/rosetta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure +copying csb/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils +copying csb/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm +copying csb/bio/hmm/pseudocounts.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm +copying csb/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases copying csb/test/cases/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core +copying csb/test/cases/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io +copying csb/test/cases/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio +copying csb/test/cases/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric copying csb/test/cases/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric copying csb/test/cases/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio -copying csb/test/cases/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics -copying csb/test/cases/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics -copying csb/test/cases/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics -copying csb/test/cases/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics -copying csb/test/cases/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics +copying csb/test/cases/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core -copying csb/test/cases/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core +copying csb/test/cases/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics +copying csb/test/cases/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics +copying csb/test/cases/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io -copying csb/test/cases/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/utils -copying csb/test/cases/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/utils -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments -copying csb/test/cases/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/hmm -copying csb/test/cases/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/hmm -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure -copying csb/test/cases/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/nmr +copying csb/test/cases/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/nmr creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence copying csb/test/cases/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io copying csb/test/cases/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/nmr -copying csb/test/cases/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/nmr +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments +copying csb/test/cases/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure +copying csb/test/cases/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/utils +copying csb/test/cases/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/utils +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/hmm +copying csb/test/cases/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/hmm creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/alignment copying csb/test/cases/bio/sequence/alignment/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/alignment creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/clans copying csb/test/cases/bio/io/clans/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/clans -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck -copying csb/test/cases/bio/io/procheck/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe +copying csb/test/cases/bio/io/noe/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/mrc copying csb/test/cases/bio/io/mrc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/mrc -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred -copying csb/test/cases/bio/io/hhpred/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta +copying csb/test/cases/bio/io/fasta/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/whatif +copying csb/test/cases/bio/io/whatif/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/whatif creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs copying csb/test/cases/bio/io/cs/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred +copying csb/test/cases/bio/io/hhpred/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck +copying csb/test/cases/bio/io/procheck/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/wwpdb copying csb/test/cases/bio/io/wwpdb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/wwpdb -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/whatif -copying csb/test/cases/bio/io/whatif/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/whatif -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe -copying csb/test/cases/bio/io/noe/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta -copying csb/test/cases/bio/io/fasta/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers copying csb/test/cases/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf copying csb/test/cases/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf copying csb/test/cases/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils -copying csb/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments -copying csb/bio/fragments/rosetta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments -copying csb/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm -copying csb/bio/hmm/pseudocounts.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm -copying csb/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure -copying csb/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence -copying csb/bio/sequence/alignment.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence -copying csb/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/wwpdb.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/vasco.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/cs.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/fasta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/svg.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/hhpred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/mrc.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/clans.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/whatif.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/procheck.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/psipred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/dssp.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/noe.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr -copying csb/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers copying csb/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf copying csb/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf copying csb/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc -copying csb/statistics/samplers/mc/singlechain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc -copying csb/statistics/samplers/mc/propagators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/neqsteppropagator.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc +copying csb/statistics/samplers/mc/singlechain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/multichain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc +copying csb/statistics/samplers/mc/propagators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc running egg_info creating csb.egg-info writing csb.egg-info/PKG-INFO @@ -1167,8 +1203,21 @@ Pickle.dump(model1, open(os.path.join(self.generatedData, '1nz9.model1.pickle'), 'wb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback :530: DeprecationWarning: the load_module() method is deprecated and slated for removal in Python 3.12; use exec_module() instead +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:482: SyntaxWarning: invalid escape sequence '\w' + "([0-9a-zA-Z]([-.\w]*[0-9a-zA-Z])"] /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__init__.py:341: SyntaxWarning: invalid escape sequence '\s' """ +:530: DeprecationWarning: the load_module() method is deprecated and slated for removal in Python 3.12; use exec_module() instead +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:32: SyntaxWarning: invalid escape sequence '\s' + re_ramachandran = re.compile('Ramachandran\s*Z-score\s*:\s*([0-9.Ee-]+)') +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:33: SyntaxWarning: invalid escape sequence '\s' + re_1st = re.compile('1st\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:34: SyntaxWarning: invalid escape sequence '\s' + re_2nd = re.compile('2nd\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:35: SyntaxWarning: invalid escape sequence '\s' + re_backbone = re.compile('Backbone\s*conformation\s*Z-score\s*:\s*([0-9.Ee-]+)') +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:36: SyntaxWarning: invalid escape sequence '\S' + re_rotamer = re.compile('chi-1\S*chi-2\s*rotamer\s*normality\s*:\s*([0-9.Ee-]+)') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py:31: SyntaxWarning: invalid escape sequence '\s' input_file_name = re.compile('>>>-----.*?\n.*?\n\s*\|\s*(\S+)\s+') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py:32: SyntaxWarning: invalid escape sequence '\d' @@ -1189,273 +1238,167 @@ g_factors = re.compile('G-factors\s*Dihedrals:\s*([0-9-+.]+)' + /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py:40: SyntaxWarning: invalid escape sequence '\s' '\s*Covalent:\s*([0-9-+.]+)\s*Overall:\s*([0-9-+.]+)') -:530: DeprecationWarning: the load_module() method is deprecated and slated for removal in Python 3.12; use exec_module() instead -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:32: SyntaxWarning: invalid escape sequence '\s' - re_ramachandran = re.compile('Ramachandran\s*Z-score\s*:\s*([0-9.Ee-]+)') -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:33: SyntaxWarning: invalid escape sequence '\s' - re_1st = re.compile('1st\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:34: SyntaxWarning: invalid escape sequence '\s' - re_2nd = re.compile('2nd\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:35: SyntaxWarning: invalid escape sequence '\s' - re_backbone = re.compile('Backbone\s*conformation\s*Z-score\s*:\s*([0-9.Ee-]+)') -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:36: SyntaxWarning: invalid escape sequence '\S' - re_rotamer = re.compile('chi-1\S*chi-2\s*rotamer\s*normality\s*:\s*([0-9.Ee-]+)') -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:482: SyntaxWarning: invalid escape sequence '\w' - "([0-9a-zA-Z]([-.\w]*[0-9a-zA-Z])"] -testLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testLeapFrog) ... ok -testVelocityVerlet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testVelocityVerlet) ... ok -testFastLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testFastLeapFrog) ... ok -testLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testLeapFrog) ... ok -testVelocityVerlet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testVelocityVerlet) ... ok -testCaching (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testCaching) ... ok -testDiagonalTweak (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testDiagonalTweak) ... skipped 'machine-specific' -testUnityMultipleTweak (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testUnityMultipleTweak) ... skipped 'machine-specific' -testDihedralAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.MathRegressions.testDihedralAngles) -r526 ... ok -testDegree2Radian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testDegree2Radian) ... ok -testDihedralAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testDihedralAngles) ... ok -testExp (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testExp) ... ok -testFromPolar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testFromPolar) ... ok -testLog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testLog) ... ok -testPolar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testPolar) ... ok -testRadian2Degree (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testRadian2Degree) ... ok -testRotationMatrix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testRotationMatrix) ... ERROR -testLogTrapezoidal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal) ... ok -testLogTrapezoidal2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal2D) ... ok -testSimpson2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testSimpson2D) ... ok -testTrapezoidal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal) ... ok -testTrapezoidal2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal2D) ... ok -testRmsdMirrorImage (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.Regressions.testRmsdMirrorImage) ... ok -testTMSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.Regressions.testTMSuperimpose) -@see: [CSB 0000058] ... ok -testCenterOfMass (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testCenterOfMass) ... ok -testDeg (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testDeg) ... ok -testDistance (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testDistance) ... ok -testDistanceMatrix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testDistanceMatrix) ... ok -testFindPairs (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testFindPairs) ... ok -testFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testFit) ... ok -testFitWellordered (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testFitWellordered) ... ok -testInertiaTensor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testInertiaTensor) ... ok -testRad (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testRad) ... ok -testRadiusOfGyration (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testRadiusOfGyration) ... ok -testRmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testRmsd) ... ok -testRmsdCur (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testRmsdCur) ... ok -testScaleAndFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testScaleAndFit) ... ok -testSecondMoments (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testSecondMoments) ... ok -testTmScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testTmScore) ... ok -testTmSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testTmSuperimpose) ... ok -testTorsionRmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testTorsionRmsd) ... ok -testWFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testWFit) ... ok -testWrmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testWrmsd) ... ok -testAnchoredAround (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testAnchoredAround) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.model1.pickle'> - return csb.io.Pickle.load(open(file, 'rb')) +testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestAbstractContainer.testGetitem) ... ok +testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestAbstractContainer.testIterator) ... ok +testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestAbstractNIContainer.testGetitem) ... ok +testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestAbstractNIContainer.testIterator) ... ok +testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testAppend) ... ok +testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testBool) ... ok +testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testConstructor) ... ok +testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testGetitem) ... ok +testIndices (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testIndices) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testLength) ... ok +testUpdate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testUpdate) ... ok +runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDeepCopy.runTest) ... ERROR +testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testAppend) ... ok +testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testBool) ... ok +testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testConstructor) ... ok +testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testGetitem) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testLength) ... ok +testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testRemove) ... ok +testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testSet) ... ok +testUpdate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testUpdate) ... ok +testComparison (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testComparison) ... FAIL +testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testConstructor) ... ok +testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testCreate) ... ok +testInOperator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testInOperator) ... ok +testIsMember (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testIsMember) ... ok +testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testIterator) ... ok +testMembers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testMembers) ... ok +testMutability (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testMutability) ... ok +testNames (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testNames) ... ok +testParseName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testParseName) ... ok +testParseValue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testParseValue) ... ok +testRepr (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testRepr) ... ok +testSerialization (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testSerialization) ... ok +testStr (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testStr) ... ok +testValues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testValues) ... ok +runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestIterable.runTest) ... ok +runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestOrderedDict.runTest) ... ok +testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestAutoFlushStream.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpcm3t9g0g' mode='r' encoding='UTF-8'> + content = open(self.temp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testBackbone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testBackbone) ... ok -testBackboneAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testBackboneAt) ... ok -testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testEnd) ... ok -testOverlap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testOverlap) ... ok -testQEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testQEnd) ... ok -testQStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testQStart) ... ok -testRMSD (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testRMSD) ... ok -testRMSDTo (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testRMSDTo) ... ok -testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testSequence) ... ok -testSourceID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testSourceID) ... ok -testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testStart) ... ok -testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testTorsion) ... ok -testTorsionAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testTorsionAt) ... ok -testCount (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testCount) ... ok -testMean (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testMean) ... ok -testShrink (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testShrink) ... ok -testShrinkOne (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testShrinkOne) ... ok -testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testAccession) ... ok -testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testEnd) ... ok -testFomObject (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testFomObject) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testLength) ... ok -testQEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testQEnd) ... ok -testQStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testQStart) ... ok -testResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testResidues) ... ok -testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testScore) ... ok -testSourceID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testSourceID) ... ok -testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testStart) ... ok -testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testSubregion) ... ok -testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testTorsion) ... ok -testAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testAt) ... ok -testComplement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testComplement) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp8q68nujz' mode='r' encoding='UTF-8'> - new = open(tmp.name).read().rstrip() +testGzip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testGzip) ... ok +testGzipFail (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testGzipFail) ... ok +testLock (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testLock) ... ok +testLockGzip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testLockGzip) ... ok +testRecusionLimit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testRecusionLimit) ... FAIL +testSimple (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testSimple) ... ok +testAllMarkers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testAllMarkers) ... ok +testDel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testDel) ... ok +testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testRead) ... ok +testReadAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testReadAll) ... ok +testStartMarker (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testStartMarker) ... ok +testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testConstructor) ... ok +testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testContextManager) ... ok +testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpzdq1nv30' mode='r' encoding='UTF-8'> + self.assertEqual(open(temp.name).read(), 'D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testFromSource (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testFromSource) ... ok -testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testIndexer) ... ok -testMarkUnconfident (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testMarkUnconfident) ... ok -testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/rosetta.py:457: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1nz9A.frags' mode='r' encoding='UTF-8'> - for line in open(file): +testWriteAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testWriteAll) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp20oh2ryc' mode='r' encoding='UTF-8'> + self.assertEqual(open(temp.name).read(), 'A/B/C/') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testSize) ... ok -testSort (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testSort) ... ok -testSources (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testSources) ... ok -testStartingAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testStartingAt) ... ok -testMakeChopped (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeChopped) ... ok -testMakeCombined (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeCombined) ... ok -testMakeFiltered (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeFiltered) ... ok -testMakeFragset (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeFragset) ... ok -testMix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMix) ... ok -testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testAccession) ... ok -testAssign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testAssign) ... ok -testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testEntryID) ... ok -testFilter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testFilter) ... ok -testFromProfile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testFromProfile) ... ok -testFromSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testFromSequence) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testLength) ... ok -testMatches (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testMatches) ... ok -testResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testResidues) ... ok -testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testSequence) ... ok -testAssign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testAssign) ... ok -testAssignments (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testAssignments) ... ok -testClosest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testClosest) ... ok -testFilter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testFilter) ... ok -testLongest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testLongest) ... ok -testNative (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testNative) ... ok -testPrecision (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testPrecision) ... ok -testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testType) ... ok -testCompute (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testCompute) ... ok -testComputeSingle (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testComputeSingle) ... ok -testFlatTorsionMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testFlatTorsionMap) ... ok -testGetAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testGetAngles) ... ok -testTarget (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testTarget) ... ok -testThreshold (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testThreshold) ... ok -testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testAppend) ... ok -testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testIndexer) ... ok -testNeff (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testNeff) ... ok -testRank (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testRank) ... ok -testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testResidue) ... ok -testAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHit.testAlignment) ... ok -testEquals (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHit.testEquals) ... ok -testIncludes (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHit.testIncludes) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHit.testLength) ... ok -testSurpasses (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHit.testSurpasses) ... ok -testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHitList.testIterator) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHitList.testLength) ... ok -testSort (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHitList.testSort) ... ok -testAllLayers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testAllLayers) ... ok -testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testChain) ... ok -testConvertScores (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testConvertScores) ... ok -testEmissionSimilarity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testEmissionSimilarity) ... ok -testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testEnd) ... ok -testID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testID) ... ok -testLayers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testLayers) ... ok -testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testName) ... ok -testScoreUnits (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testScoreUnits) ... ok -testSegment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testSegment) ... ok -testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStart) ... ok -testStartInsertion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStartInsertion) ... ok -testStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStructure) ... ok -testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testSubregion) ... ok -testToHMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testToHMM) ... ok -testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment.testConstructor) ... ok -testToHMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment.testToHMM) ... ok -runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestPseudocountBuilder.runTest) ... ok -testBackground (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testBackground) ... ok -testEmission (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testEmission) ... ok -testSilent (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testSilent) ... ok -testTransitions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testTransitions) ... ok -testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testType) ... ok -testAppendAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.ChainRegressions.testAppendAtom) -@see: [CSB 0000122] ... ok -testApplyTransformation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.ChainRegressions.testApplyTransformation) -@see: [CSB 0000030] ... ok -testClone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.ChainRegressions.testClone) -@see: [CSB 0000029] ... ok -testListCoordinates (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.ChainRegressions.testListCoordinates) -Performance tweaks in AbstractEntity.get_coordinates() ... skipped 'may fail on slower machines' -testApplyTransformation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testApplyTransformation) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.full.pickle'> - return csb.io.Pickle.load(open(file, 'rb')) +testWriteLine (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testWriteLine) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpk8l1rsaw' mode='r' encoding='UTF-8'> + self.assertEqual(open(temp.name).read(), 'D' + csb.io.NEWLINE) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testComponents (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testComponents) ... ok -testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testItems) ... ok -testListCoordinates (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testListCoordinates) ... ok -testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testElement) ... ok -testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testName) ... ok -testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testResidue) -@todo: more checks are needed here (e.g. append an atom to different residues) ... ok -testSerialNumber (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testSerialNumber) -@bug: check for overlapping SNs in a Chain ... ok -testSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testSorting) ... ok -testVector (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testVector) ... ok -testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testAccession) ... ok -testAlign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testAlign) ... ok -testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testAlphabet) ... ok -testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testAppend) ... ok -testClone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testClone) ... ok -testComputeTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testComputeTorsion) ... ok -testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testContains) ... ok -testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testEntryID) ... ok -testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testFind) ... ok -testFromSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testFromSequence) ... ok -testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testGetitem) ... ok -testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testHeader) ... ok -testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testId) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testLength) ... ok -testListCoordinates (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testListCoordinates) ... ok -testRMSD (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testRMSD) ... ok -testSecStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testSecStructure) ... ok -testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testSequence) ... ok -testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testSubregion) ... ok -testSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testSuperimpose) ... ok -testTMScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testTMScore) ... ok -testTMSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testTMSuperimpose) ... ok -testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testType) ... ok -testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testAppend) ... ok -testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testElement) ... ok -testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testFind) ... ok -testIteration (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testIteration) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testLength) ... ok -testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testName) ... ok -testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testResidue) -@todo: more checks are needed here (e.g. append an atom to different residues) ... ok -testSerialNumber (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testSerialNumber) -@bug: check for overlapping SNs in a Chain ... ok -testSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testSorting) ... ok -testVector (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testVector) ... ok -testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testAppend) ... ok -testComponents (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testComponents) ... ok -testFirstModel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testFirstModel) ... ok -testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testGetitem) ... ok -testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testItems) ... ok -testToPDB (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testToPDB) ... ok -testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testAppend) ... ok -testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testFactory) ... ok -testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testGetitem) ... ok -testHasStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testHasStructure) ... ok -testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testId) ... ok -testInsertionCode (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testInsertionCode) ... ok -testIsModified (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testIsModified) ... ok -testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testItems) ... ok -testLabel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testLabel) ... ok -testSequenceNumber (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testSequenceNumber) ... ok -testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testTorsion) ... ok -testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testType) ... ok -testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testAccession) ... ok -testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testAppend) ... ok -testFirstChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testFirstChain) ... ok -testFromChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testFromChain) ... ok -testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testGetitem) ... ok -testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testItems) ... ok -testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testRemove) ... ok -testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testToFASTA) ... ok -testToPDB (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testToPDB) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpoegttgyj' mode='r' encoding='UTF-8'> - self.assertEqual(pdbraw, open(tmp.name).read()) +testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestMemoryStream.testClose) ... ok +testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestMemoryStream.testContextManager) ... ok +testFlush (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestMemoryStream.testFlush) ... ok +testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestMemoryStream.testWrite) ... ok +testExitCode (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestShell.testExitCode) ... ok +testSTDERR (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestShell.testSTDERR) ... ok +testSTDOUT (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestShell.testSTDOUT) ... ok +testArrayCompatibility (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testArrayCompatibility) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:59: DeprecationWarning: __array__ implementation doesn't accept a copy keyword, so passing copy=False failed. __array__ must implement 'dtype' and 'copy' keyword arguments. To learn more, see the migration guide https://numpy.org/devdocs/numpy_2_0_migration_guide.html#adapting-to-changes-in-the-copy-keyword + array = numpy.array(self.table) +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:64: DeprecationWarning: __array__ implementation doesn't accept a copy keyword, so passing copy=False failed. __array__ must implement 'dtype' and 'copy' keyword arguments. To learn more, see the migration guide https://numpy.org/devdocs/numpy_2_0_migration_guide.html#adapting-to-changes-in-the-copy-keyword + array = numpy.array(t) +ok +testDataAccess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testDataAccess) ... ok +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/csb.tsv' mode='r' encoding='UTF-8'> + self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpaoyjtc08' mode='r' encoding='UTF-8'> - self.assertEqual(pdbraw, open(tmp.name).read()) +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpondf5jmy' mode='r' encoding='UTF-8'> + self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testBool) ... ok -testConversion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testConversion) ... ok -testRMSD (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testRMSD) ... ok +testInsert (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testInsert) ... ok +testIteration (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testIteration) ... ok +testSQLDataAccess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testSQLDataAccess) ... ok +testScalar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testScalar) ... ok +testSelect (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testSelect) ... ok +testUpdate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testUpdate) ... ok +testWhere (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testWhere) ... ok +testAutoCleanup (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testAutoCleanup) ... ok +testCallForwarding (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testCallForwarding) ... ok +testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testClose) ... ok +testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testContextManager) ... ok +testMultipleHandles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testMultipleHandles) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpsfkehk_h' mode='r' encoding='UTF-8'> + self.assertEqual(data, open(temp.name).read()) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testAutoCleanup (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFolder.testAutoCleanup) ... ok +testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFolder.testClose) ... ok +testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFolder.testContextManager) ... ok +testConnected (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testConnected) ... ok +testConnectedAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testConnectedAtoms) ... ok +testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testContains) ... ok +testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testFactory) ... ok +testGetAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testGetAtoms) ... ok +testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo.testConstructor) ... ok +testLabel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo.testLabel) ... ok +testNegative (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel.testNegative) ... ok +testPositive (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel.testPositive) ... ok +testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel.testScore) ... ok +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.model1.pickle'> + return csb.io.Pickle.load(open(file, 'rb')) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +testAtomContacts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testAtomContacts) ... ok +testAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testAtoms) ... ok +testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testBuild) ... ok +testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testChain) ... ok +testCompare (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testCompare) ... ok +testConnect (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testConnect) ... ok +testConnected (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testConnected) ... ok +testContacts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testContacts) ... ok +testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testContains) ... ok +testCutoff (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testCutoff) ... ok +testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testIterator) ... ok +testPosition (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testPosition) ... ok +testResidueContacts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testResidueContacts) ... ok +testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testBuild) ... ok +testFromAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testFromAtom) ... ok +testFromShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testFromShift) ... ok +testFromString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testFromString) ... ok +testGetAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testGetAtom) ... ok +testMatch (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testMatch) ... ok +testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testParse) ... ok +testConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testConnectedDimensions) ... ok +testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testElement) ... ok +testGet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testGet) ... ok +testHasConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testHasConnectedDimensions) ... ok +testHasElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testHasElement) ... ok +testIntensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testIntensity) ... ok +testNumDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testNumDimensions) ... ok +testConnect (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testConnect) ... ok +testConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testConnectedDimensions) ... ok +testDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testDimensions) ... ok +testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testElement) ... ok +testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testGetitem) ... ok +testHasConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testHasConnectedDimensions) ... ok +testHasElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testHasElement) ... ok +testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testIterator) ... ok +testLen (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testLen) ... ok +testMaxIntensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testMaxIntensity) ... ok +testMinIntensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testMinIntensity) ... ok +testNumDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testNumDimensions) ... ok +testNumProtonDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testNumProtonDimensions) ... ok +testProtonDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testProtonDimensions) ... ok +testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testFactory) ... ok +testSecondaryShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testSecondaryShift) ... ok +testSimpleSecondaryShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testSimpleSecondaryShift) ... ok testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testFormat) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:312: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.a3m' mode='r' encoding='UTF-8'> self.a3m = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback @@ -1486,10 +1429,10 @@ testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSize) ... ok testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSubregion) ... ok testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testAlphabet) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpzbm2pcxe' mode='r' encoding='UTF-8'> +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpy8b8xyj7' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp5pj2dnmx' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmplwgcjfiu' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1505,10 +1448,10 @@ testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testToString) ... ok testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testType) ... ok testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testAlphabet) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpt6h21kdu' mode='r' encoding='UTF-8'> +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpwvj8c9v8' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmph7_0q5ma' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpm11yext3' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1524,10 +1467,10 @@ testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testToString) ... ok testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testType) ... ok testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testAlphabet) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpkndvtvqx' mode='r' encoding='UTF-8'> +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpkx24yw2m' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpsln7mp4x' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp45k3fmp9' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1554,10 +1497,10 @@ testRows (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRows) ... ok testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSize) ... ok testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSubregion) ... ok -testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection.testToFASTA) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp7nyrnbsa' mode='r' encoding='UTF-8'> +testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection.testToFASTA) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpic7dtvbf' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp9dj9qizg' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmphmzmx71o' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1609,7 +1552,21 @@ testAppendingSeqgroupsFromOtherInstance (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAppendingSeqgroupsFromOtherInstance) ... ok testInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testInit) ... ok testRemovingClansEntries (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testRemovingClansEntries) ... ok -testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/procheck.TestProcheckParser.testParse) ... ok +testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py:22: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Sparky.peaks' mode='r' encoding='UTF-8'> + content = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testReadAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadAll) ... ok +testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadFile) ... ok +testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestXeasyFileBuilder.testBuild) ... ok +testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy1.peaks' mode='r' encoding='UTF-8'> + content = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader2.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy2.peaks' mode='r' encoding='UTF-8'> + content = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/mrc.py:248: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead array = numpy.fromstring(map_data, numpy.float32, count) ok @@ -1617,27 +1574,63 @@ testReadRawHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testReadRawHeader) ... ok testReconstructHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter.testReconstructHeader) ... ok testWriteDensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter.testWriteDensity) ... ok -testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseFile) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:166: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1ea0a1.hhr' mode='r' encoding='UTF-8'> - content = open(filename).read() +testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp1cz6oeb0' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testParseString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseString) ... ok -testLargeHitlist (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputRegressions.testLargeHitlist) -@see: [CSB 0000056] ... ok -testFormatStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testFormatStructure) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'> - for line in open(structure_file): +testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpf2k_zckh' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp6zv3yxek' mode='r' encoding='UTF-8'> - break +ok +testA3mToFasta (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testA3mToFasta) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp8daoz__6' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), 'A-CD\nAB-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testParseLogScales (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseLogScales) ... ok -testParseProbability (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseProbability) ... ok -testParseRedundantA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions.testParseRedundantA3M) -@see: [CSB 0000068], [CSB 0000128] ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp30t9e6y6' mode='r' encoding='UTF-8'> - generated = open(tmp.name).read() +testFastaToA3m (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testFastaToA3m) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp4c8imaj3' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), 'ACD\nAb-D') +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp2vt1mnl9' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpvc9j76wz' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testReadA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader.testReadA3M) ... ok +testReadFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader.testReadFASTA) ... ok +testStrict (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader.testStrict) ... ok +testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestOutputBuilder.testCreate) ... ok +testParseString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testParseString) ... ok +testReadJunk (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadJunk) ... ok +testReadNucleicSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadNucleicSequence) ... ok +testReadProteinSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadProteinSequence) ... ok +testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpwuzdpnzq' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok +testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpj4zptync' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testReadA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader.testReadA3M) ... ok +testReadFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader.testReadFASTA) ... ok +testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testParseFile) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:19: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/test.fa' mode='r' encoding='UTF-8'> + self.data = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testParseString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testParseString) ... ok +testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testRead) ... ok +testMakeAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory.testMakeAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/3p1u.pdb' mode='r' encoding='UTF-8'> + break +ResourceWarning: Enable tracemalloc to get the object allocation traceback +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1d3z.regular.pdb' mode='r' encoding='UTF-8'> + break +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testMakeEntry (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory.testMakeEntry) ... ok +testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/whatif.TestWhatCheckParser.testParse) ... ok testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testCreate) ... ok testGuess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testGuess) ... ok testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testReadFile) ... ok @@ -1652,6 +1645,28 @@ content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok +testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseFile) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:166: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1ea0a1.hhr' mode='r' encoding='UTF-8'> + content = open(filename).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testParseString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseString) ... ok +testLargeHitlist (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputRegressions.testLargeHitlist) +@see: [CSB 0000056] ... ok +testFormatStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testFormatStructure) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'> + for line in open(structure_file): +ResourceWarning: Enable tracemalloc to get the object allocation traceback +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp280c2xan' mode='r' encoding='UTF-8'> + break +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testParseLogScales (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseLogScales) ... ok +testParseProbability (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseProbability) ... ok +testParseRedundantA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions.testParseRedundantA3M) +@see: [CSB 0000068], [CSB 0000128] ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp1z_8_ti9' mode='r' encoding='UTF-8'> + generated = open(tmp.name).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/procheck.TestProcheckParser.testParse) ... ok testCommaSplitting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestBiomoleculeRegressions.testCommaSplitting) @see: [CSB 0000067] ... ok testMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper.testMap) ... ok @@ -1662,10 +1677,7 @@ ok testAdd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testAdd) ... ok testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testFind) ... ok -testGet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testGet) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/3p1u.pdb' mode='r' encoding='UTF-8'> - break -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok +testGet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testGet) ... ok testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testRemove) ... ok testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testAccession) ... ok testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testChain) ... ok @@ -1691,10 +1703,7 @@ testParseResidueSafe (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseResidueSafe) ... ok testParseStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseStructure) ... ok testHetMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions.testHetMapping) -@see: [CSB 0000031] ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1d3z.regular.pdb' mode='r' encoding='UTF-8'> - break -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok +@see: [CSB 0000031] ... ok testNonStandardResidueMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions.testNonStandardResidueMapping) @see: [CSB 0000052] ... ok testCombinedMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testCombinedMapping) ... ok @@ -1729,126 +1738,259 @@ for line in open(structure_file): ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/whatif.TestWhatCheckParser.testParse) ... ok -testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py:22: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Sparky.peaks' mode='r' encoding='UTF-8'> - content = open(self.file).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testReadAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadAll) ... ok -testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadFile) ... ok -testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestXeasyFileBuilder.testBuild) ... ok -testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy1.peaks' mode='r' encoding='UTF-8'> - content = open(self.file).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader2.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy2.peaks' mode='r' encoding='UTF-8'> - content = open(self.file).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpuqdph_6w' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmprm2c_27s' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testA3mToFasta (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testA3mToFasta) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpkf3i856l' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), 'A-CD\nAB-D') -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testFastaToA3m (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testFastaToA3m) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpbty90bfv' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), 'ACD\nAb-D') -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpdh0tfpdd' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) +testAnchoredAround (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testAnchoredAround) ... ok +testBackbone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testBackbone) ... ok +testBackboneAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testBackboneAt) ... ok +testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testEnd) ... ok +testOverlap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testOverlap) ... ok +testQEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testQEnd) ... ok +testQStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testQStart) ... ok +testRMSD (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testRMSD) ... ok +testRMSDTo (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testRMSDTo) ... ok +testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testSequence) ... ok +testSourceID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testSourceID) ... ok +testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testStart) ... ok +testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testTorsion) ... ok +testTorsionAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testTorsionAt) ... ok +testCount (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testCount) ... ok +testMean (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testMean) ... ok +testShrink (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testShrink) ... ok +testShrinkOne (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testShrinkOne) ... ok +testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testAccession) ... ok +testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testEnd) ... ok +testFomObject (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testFomObject) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testLength) ... ok +testQEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testQEnd) ... ok +testQStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testQStart) ... ok +testResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testResidues) ... ok +testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testScore) ... ok +testSourceID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testSourceID) ... ok +testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testStart) ... ok +testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testSubregion) ... ok +testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testTorsion) ... ok +testAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testAt) ... ok +testComplement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testComplement) ... ok +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpygsp1bna' mode='r' encoding='UTF-8'> + new = open(tmp.name).read().rstrip() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpbchdgyzq' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) +testFromSource (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testFromSource) ... ok +testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testIndexer) ... ok +testMarkUnconfident (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testMarkUnconfident) ... ok +testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/rosetta.py:457: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1nz9A.frags' mode='r' encoding='UTF-8'> + for line in open(file): ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testReadA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader.testReadA3M) ... ok -testReadFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader.testReadFASTA) ... ok -testStrict (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader.testStrict) ... ok -testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestOutputBuilder.testCreate) ... ok -testParseString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testParseString) ... ok -testReadJunk (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadJunk) ... ok -testReadNucleicSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadNucleicSequence) ... ok -testReadProteinSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadProteinSequence) ... ok -testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmprn56541y' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) +testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testSize) ... ok +testSort (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testSort) ... ok +testSources (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testSources) ... ok +testStartingAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testStartingAt) ... ok +testMakeChopped (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeChopped) ... ok +testMakeCombined (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeCombined) ... ok +testMakeFiltered (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeFiltered) ... ok +testMakeFragset (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeFragset) ... ok +testMix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMix) ... ok +testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testAccession) ... ok +testAssign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testAssign) ... ok +testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testEntryID) ... ok +testFilter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testFilter) ... ok +testFromProfile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testFromProfile) ... ok +testFromSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testFromSequence) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testLength) ... ok +testMatches (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testMatches) ... ok +testResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testResidues) ... ok +testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testSequence) ... ok +testAssign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testAssign) ... ok +testAssignments (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testAssignments) ... ok +testClosest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testClosest) ... ok +testFilter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testFilter) ... ok +testLongest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testLongest) ... ok +testNative (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testNative) ... ok +testPrecision (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testPrecision) ... ok +testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testType) ... ok +testCompute (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testCompute) ... ok +testComputeSingle (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testComputeSingle) ... ok +testFlatTorsionMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testFlatTorsionMap) ... ok +testGetAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testGetAngles) ... ok +testTarget (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testTarget) ... ok +testThreshold (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testThreshold) ... ok +testAppendAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.ChainRegressions.testAppendAtom) +@see: [CSB 0000122] ... ok +testApplyTransformation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.ChainRegressions.testApplyTransformation) +@see: [CSB 0000030] ... ok +testClone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.ChainRegressions.testClone) +@see: [CSB 0000029] ... ok +testListCoordinates (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.ChainRegressions.testListCoordinates) +Performance tweaks in AbstractEntity.get_coordinates() ... skipped 'may fail on slower machines' +testApplyTransformation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testApplyTransformation) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.full.pickle'> + return csb.io.Pickle.load(open(file, 'rb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpe8nyeue5' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) +testComponents (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testComponents) ... ok +testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testItems) ... ok +testListCoordinates (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testListCoordinates) ... ok +testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testElement) ... ok +testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testName) ... ok +testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testResidue) +@todo: more checks are needed here (e.g. append an atom to different residues) ... ok +testSerialNumber (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testSerialNumber) +@bug: check for overlapping SNs in a Chain ... ok +testSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testSorting) ... ok +testVector (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testVector) ... ok +testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testAccession) ... ok +testAlign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testAlign) ... ok +testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testAlphabet) ... ok +testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testAppend) ... ok +testClone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testClone) ... ok +testComputeTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testComputeTorsion) ... ok +testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testContains) ... ok +testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testEntryID) ... ok +testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testFind) ... ok +testFromSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testFromSequence) ... ok +testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testGetitem) ... ok +testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testHeader) ... ok +testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testId) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testLength) ... ok +testListCoordinates (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testListCoordinates) ... ok +testRMSD (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testRMSD) ... ok +testSecStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testSecStructure) ... ok +testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testSequence) ... ok +testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testSubregion) ... ok +testSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testSuperimpose) ... ok +testTMScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testTMScore) ... ok +testTMSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testTMSuperimpose) ... ok +testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testType) ... ok +testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testAppend) ... ok +testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testElement) ... ok +testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testFind) ... ok +testIteration (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testIteration) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testLength) ... ok +testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testName) ... ok +testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testResidue) +@todo: more checks are needed here (e.g. append an atom to different residues) ... ok +testSerialNumber (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testSerialNumber) +@bug: check for overlapping SNs in a Chain ... ok +testSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testSorting) ... ok +testVector (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testVector) ... ok +testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testAppend) ... ok +testComponents (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testComponents) ... ok +testFirstModel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testFirstModel) ... ok +testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testGetitem) ... ok +testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testItems) ... ok +testToPDB (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testToPDB) ... ok +testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testAppend) ... ok +testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testFactory) ... ok +testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testGetitem) ... ok +testHasStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testHasStructure) ... ok +testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testId) ... ok +testInsertionCode (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testInsertionCode) ... ok +testIsModified (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testIsModified) ... ok +testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testItems) ... ok +testLabel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testLabel) ... ok +testSequenceNumber (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testSequenceNumber) ... ok +testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testTorsion) ... ok +testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testType) ... ok +testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testAccession) ... ok +testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testAppend) ... ok +testFirstChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testFirstChain) ... ok +testFromChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testFromChain) ... ok +testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testGetitem) ... ok +testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testItems) ... ok +testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testRemove) ... ok +testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testToFASTA) ... ok +testToPDB (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testToPDB) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpl9i2iwyq' mode='r' encoding='UTF-8'> + self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testReadA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader.testReadA3M) ... ok -testReadFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader.testReadFASTA) ... ok -testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testParseFile) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:19: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/test.fa' mode='r' encoding='UTF-8'> - self.data = open(self.file).read() +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmprr263i1z' mode='r' encoding='UTF-8'> + self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testParseString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testParseString) ... ok -testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testRead) ... ok -testMakeAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory.testMakeAlignment) ... ok -testMakeEntry (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory.testMakeEntry) ... ok -testConnected (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testConnected) ... ok -testConnectedAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testConnectedAtoms) ... ok -testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testContains) ... ok -testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testFactory) ... ok -testGetAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testGetAtoms) ... ok -testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo.testConstructor) ... ok -testLabel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo.testLabel) ... ok -testNegative (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel.testNegative) ... ok -testPositive (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel.testPositive) ... ok -testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel.testScore) ... ok -testAtomContacts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testAtomContacts) ... ok -testAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testAtoms) ... ok -testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testBuild) ... ok -testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testChain) ... ok -testCompare (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testCompare) ... ok -testConnect (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testConnect) ... ok -testConnected (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testConnected) ... ok -testContacts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testContacts) ... ok -testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testContains) ... ok -testCutoff (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testCutoff) ... ok -testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testIterator) ... ok -testPosition (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testPosition) ... ok -testResidueContacts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testResidueContacts) ... ok -testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testBuild) ... ok -testFromAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testFromAtom) ... ok -testFromShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testFromShift) ... ok -testFromString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testFromString) ... ok -testGetAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testGetAtom) ... ok -testMatch (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testMatch) ... ok -testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testParse) ... ok -testConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testConnectedDimensions) ... ok -testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testElement) ... ok -testGet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testGet) ... ok -testHasConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testHasConnectedDimensions) ... ok -testHasElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testHasElement) ... ok -testIntensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testIntensity) ... ok -testNumDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testNumDimensions) ... ok -testConnect (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testConnect) ... ok -testConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testConnectedDimensions) ... ok -testDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testDimensions) ... ok -testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testElement) ... ok -testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testGetitem) ... ok -testHasConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testHasConnectedDimensions) ... ok -testHasElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testHasElement) ... ok -testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testIterator) ... ok -testLen (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testLen) ... ok -testMaxIntensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testMaxIntensity) ... ok -testMinIntensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testMinIntensity) ... ok -testNumDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testNumDimensions) ... ok -testNumProtonDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testNumProtonDimensions) ... ok -testProtonDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testProtonDimensions) ... ok -testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testFactory) ... ok -testSecondaryShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testSecondaryShift) ... ok -testSimpleSecondaryShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testSimpleSecondaryShift) ... ok +testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testBool) ... ok +testConversion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testConversion) ... ok +testRMSD (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testRMSD) ... ok +testRmsdMirrorImage (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.Regressions.testRmsdMirrorImage) ... ok +testTMSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.Regressions.testTMSuperimpose) +@see: [CSB 0000058] ... ok +testCenterOfMass (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testCenterOfMass) ... ok +testDeg (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testDeg) ... ok +testDistance (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testDistance) ... ok +testDistanceMatrix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testDistanceMatrix) ... ok +testFindPairs (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testFindPairs) ... ok +testFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testFit) ... ok +testFitWellordered (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testFitWellordered) ... ok +testInertiaTensor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testInertiaTensor) ... ok +testRad (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testRad) ... ok +testRadiusOfGyration (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testRadiusOfGyration) ... ok +testRmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testRmsd) ... ok +testRmsdCur (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testRmsdCur) ... ok +testScaleAndFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testScaleAndFit) ... ok +testSecondMoments (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testSecondMoments) ... ok +testTmScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testTmScore) ... ok +testTmSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testTmSuperimpose) ... ok +testTorsionRmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testTorsionRmsd) ... ok +testWFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testWFit) ... ok +testWrmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testWrmsd) ... ok +testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testAppend) ... ok +testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testIndexer) ... ok +testNeff (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testNeff) ... ok +testRank (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testRank) ... ok +testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testResidue) ... ok +testAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHit.testAlignment) ... ok +testEquals (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHit.testEquals) ... ok +testIncludes (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHit.testIncludes) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHit.testLength) ... ok +testSurpasses (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHit.testSurpasses) ... ok +testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHitList.testIterator) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHitList.testLength) ... ok +testSort (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHitList.testSort) ... ok +testAllLayers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testAllLayers) ... ok +testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testChain) ... ok +testConvertScores (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testConvertScores) ... ok +testEmissionSimilarity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testEmissionSimilarity) ... ok +testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testEnd) ... ok +testID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testID) ... ok +testLayers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testLayers) ... ok +testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testName) ... ok +testScoreUnits (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testScoreUnits) ... ok +testSegment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testSegment) ... ok +testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStart) ... ok +testStartInsertion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStartInsertion) ... ok +testStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStructure) ... ok +testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testSubregion) ... ok +testToHMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testToHMM) ... ok +testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment.testConstructor) ... ok +testToHMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment.testToHMM) ... ok +runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestPseudocountBuilder.runTest) ... ok +testBackground (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testBackground) ... ok +testEmission (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testEmission) ... ok +testSilent (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testSilent) ... ok +testTransitions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testTransitions) ... ok +testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testType) ... ok +testLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testLeapFrog) ... ok +testVelocityVerlet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testVelocityVerlet) ... ok +testFastLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testFastLeapFrog) ... ok +testLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testLeapFrog) ... ok +testVelocityVerlet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testVelocityVerlet) ... ok +testCaching (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testCaching) ... ok +testDiagonalTweak (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testDiagonalTweak) ... skipped 'machine-specific' +testUnityMultipleTweak (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testUnityMultipleTweak) ... skipped 'machine-specific' +testDihedralAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.MathRegressions.testDihedralAngles) +r526 ... ok +testDegree2Radian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testDegree2Radian) ... ok +testDihedralAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testDihedralAngles) ... ok +testExp (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testExp) ... ok +testFromPolar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testFromPolar) ... ok +testLog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testLog) ... ok +testPolar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testPolar) ... ok +testRadian2Degree (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testRadian2Degree) ... ok +testRotationMatrix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testRotationMatrix) ... ERROR +testLogTrapezoidal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal) ... ok +testLogTrapezoidal2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal2D) ... ok +testSimpson2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testSimpson2D) ... ok +testTrapezoidal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal) ... ok +testTrapezoidal2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal2D) ... ok +testConformerMixture (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testConformerMixture) ... ok +testSegmentMixture (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testSegmentMixture) ... ok testEnsemble (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testEnsemble) The posterior of a gaussian scale mixture with gamma prior ... ok testGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testGamma) @@ -1861,9 +2003,10 @@ The posterior of a gaussian scale mixture with gamma prior ... ok testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testLogProb) ... ok testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testRandom) ... ok -testMaxent (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/maxe.TestMaxent.testMaxent) ... skipped 'slow' -testConformerMixture (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testConformerMixture) ... ok -testSegmentMixture (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testSegmentMixture) ... ok +testNormal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/ars.TestARS.testNormal) ... ok +testSampleFromHistogram (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/rand.TestRand.testSampleFromHistogram) ... ok +testTruncatedGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedGamma) ... ok +testTruncatedNormal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedNormal) ... ok testAutorcorrelation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testAutorcorrelation) ... ok testCircmean (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testCircmean) ... ok testCircvar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testCircvar) ... ok @@ -1871,10 +2014,7 @@ testEntropy (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testEntropy) ... ok testKurtosis (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testKurtosis) ... ok testSkewness (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testSkewness) ... ok -testSampleFromHistogram (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/rand.TestRand.testSampleFromHistogram) ... ok -testTruncatedGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedGamma) ... ok -testTruncatedNormal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedNormal) ... ok -testNormal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/ars.TestARS.testNormal) ... ok +testMaxent (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/maxe.TestMaxent.testMaxent) ... skipped 'slow' testAcceptSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC.testAcceptSwap) ... ok testSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC.testSwap) ... ok testAcceptProposal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testAcceptProposal) ... ok @@ -1977,115 +2117,20 @@ testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestNormal.testParameterEstimation) ... ok testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestNormal.testParameters) ... ok testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestNormal.testRandom) ... ok -testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestAbstractContainer.testGetitem) ... ok -testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestAbstractContainer.testIterator) ... ok -testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestAbstractNIContainer.testGetitem) ... ok -testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestAbstractNIContainer.testIterator) ... ok -testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testAppend) ... ok -testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testBool) ... ok -testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testConstructor) ... ok -testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testGetitem) ... ok -testIndices (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testIndices) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testLength) ... ok -testUpdate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testUpdate) ... ok -runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDeepCopy.runTest) ... ERROR -testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testAppend) ... ok -testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testBool) ... ok -testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testConstructor) ... ok -testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testGetitem) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testLength) ... ok -testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testRemove) ... ok -testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testSet) ... ok -testUpdate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testUpdate) ... ok -testComparison (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testComparison) ... FAIL -testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testConstructor) ... ok -testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testCreate) ... ok -testInOperator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testInOperator) ... ok -testIsMember (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testIsMember) ... ok -testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testIterator) ... ok -testMembers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testMembers) ... ok -testMutability (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testMutability) ... ok -testNames (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testNames) ... ok -testParseName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testParseName) ... ok -testParseValue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testParseValue) ... ok -testRepr (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testRepr) ... ok -testSerialization (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testSerialization) ... ok -testStr (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testStr) ... ok -testValues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testValues) ... ok -runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestIterable.runTest) ... ok -runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestOrderedDict.runTest) ... ok testNonparametricWHAM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statmech/wham.TestWHAM.testNonparametricWHAM) ... ok testWHAM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statmech/wham.TestWHAM.testWHAM) ... ok testBoltzmann (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testBoltzmann) ... ok testComposite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testComposite) ... ok testTsallis (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testTsallis) ... ok -testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestAutoFlushStream.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp61s40oci' mode='r' encoding='UTF-8'> - content = open(self.temp.name).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testGzip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testGzip) ... ok -testGzipFail (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testGzipFail) ... ok -testLock (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testLock) ... ok -testLockGzip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testLockGzip) ... ok -testRecusionLimit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testRecusionLimit) ... FAIL -testSimple (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testSimple) ... ok -testAllMarkers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testAllMarkers) ... ok -testDel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testDel) ... ok -testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testRead) ... ok -testReadAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testReadAll) ... ok -testStartMarker (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testStartMarker) ... ok -testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testConstructor) ... ok -testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testContextManager) ... ok -testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp814gkkk5' mode='r' encoding='UTF-8'> - self.assertEqual(open(temp.name).read(), 'D') -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testWriteAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testWriteAll) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_9uqafa6' mode='r' encoding='UTF-8'> - self.assertEqual(open(temp.name).read(), 'A/B/C/') -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testWriteLine (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testWriteLine) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpvcpm6ezk' mode='r' encoding='UTF-8'> - self.assertEqual(open(temp.name).read(), 'D' + csb.io.NEWLINE) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestMemoryStream.testClose) ... ok -testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestMemoryStream.testContextManager) ... ok -testFlush (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestMemoryStream.testFlush) ... ok -testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestMemoryStream.testWrite) ... ok -testExitCode (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestShell.testExitCode) ... ok -testSTDERR (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestShell.testSTDERR) ... ok -testSTDOUT (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestShell.testSTDOUT) ... ok -testArrayCompatibility (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testArrayCompatibility) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:59: DeprecationWarning: __array__ implementation doesn't accept a copy keyword, so passing copy=False failed. __array__ must implement 'dtype' and 'copy' keyword arguments. To learn more, see the migration guide https://numpy.org/devdocs/numpy_2_0_migration_guide.html#adapting-to-changes-in-the-copy-keyword - array = numpy.array(self.table) -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:64: DeprecationWarning: __array__ implementation doesn't accept a copy keyword, so passing copy=False failed. __array__ must implement 'dtype' and 'copy' keyword arguments. To learn more, see the migration guide https://numpy.org/devdocs/numpy_2_0_migration_guide.html#adapting-to-changes-in-the-copy-keyword - array = numpy.array(t) -ok -testDataAccess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testDataAccess) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/csb.tsv' mode='r' encoding='UTF-8'> - self.assertEqual(open(self.tsv).read(), open(dump.name).read()) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmphxd0t5uf' mode='r' encoding='UTF-8'> - self.assertEqual(open(self.tsv).read(), open(dump.name).read()) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testInsert (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testInsert) ... ok -testIteration (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testIteration) ... ok -testSQLDataAccess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testSQLDataAccess) ... ok -testScalar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testScalar) ... ok -testSelect (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testSelect) ... ok -testUpdate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testUpdate) ... ok -testWhere (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testWhere) ... ok -testAutoCleanup (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testAutoCleanup) ... ok -testCallForwarding (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testCallForwarding) ... ok -testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testClose) ... ok -testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testContextManager) ... ok -testMultipleHandles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testMultipleHandles) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpvv2ss3sk' mode='r' encoding='UTF-8'> - self.assertEqual(data, open(temp.name).read()) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testAutoCleanup (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFolder.testAutoCleanup) ... ok -testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFolder.testClose) ... ok -testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFolder.testContextManager) ... ok + +====================================================================== +ERROR: runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDeepCopy.runTest) +---------------------------------------------------------------------- +Traceback (most recent call last): + File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core/__init__.py", line 21, in runTest + self.assertNotEquals(id(obj), id(copy)) + ^^^^^^^^^^^^^^^^^^^^ +AttributeError: 'TestDeepCopy' object has no attribute 'assertNotEquals'. Did you mean: 'assertNotEqual'? ====================================================================== ERROR: testRotationMatrix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testRotationMatrix) @@ -2151,15 +2196,6 @@ ValueError: operands could not be broadcast together with shapes (195,) (305,) ====================================================================== -ERROR: runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDeepCopy.runTest) ----------------------------------------------------------------------- -Traceback (most recent call last): - File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core/__init__.py", line 21, in runTest - self.assertNotEquals(id(obj), id(copy)) - ^^^^^^^^^^^^^^^^^^^^ -AttributeError: 'TestDeepCopy' object has no attribute 'assertNotEquals'. Did you mean: 'assertNotEqual'? - -====================================================================== FAIL: testComparison (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testComparison) ---------------------------------------------------------------------- Traceback (most recent call last): @@ -2178,7 +2214,7 @@ AssertionError: RuntimeError not raised ---------------------------------------------------------------------- -Ran 697 tests in 138.575s +Ran 697 tests in 76.916s FAILED (failures=2, errors=6, skipped=6) make[1]: Leaving directory '/build/reproducible-path/python-csb-1.2.5+dfsg' @@ -2305,373 +2341,353 @@ running install_lib creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/csfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/bfite.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/hhfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/promix.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/precision.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/hhsearch.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/bfit.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/embd.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/helloworld.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/buildhmm.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/build.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/core/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/tsv.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/__pycache__/tsv.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/plots.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/resources +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/resources +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/resources +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/resources/AtomConnectivity.xml -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/resources +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/alignment.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/__pycache__/alignment.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/psipred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/hhpred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/cs.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/noe.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/fasta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/mrc.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/fasta.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/cs.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/wwpdb.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/clans.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/noe.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/dssp.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/whatif.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/mrc.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/hhpred.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/procheck.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/dssp.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/clans.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/svg.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/vasco.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/__pycache__/rosetta.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/rosetta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/pseudocounts.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/__pycache__/pseudocounts.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/__pycache__/integrators.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1nz9.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/ISL5.1.isl -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/mapping.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2JZC.sum -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1b24a2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/3p1u.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/ake-xray-ensemble-ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/modified.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1ea0a1.hhr -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/3shm_ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/modified2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1C3W_10.mrc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/test.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/test.fa -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1nz9.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2l01.v2.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/out.clans -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.a3m -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/modified2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/3shm_ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/modified.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1d3z.legacy.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/mapping3.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Sparky.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/ake-xray-ensemble-ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/csb.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/pdbout.txt -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/test2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy2.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/ISL5.1.isl -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/3p1u.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2l01.v3.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy1.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.a3m -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/standard.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/mapping.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/mapping2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1ea0a1.hhr -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/csb.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/test.fa -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy2.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1d3z.legacy.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1nz9A.frags -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1d3z.regular.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1b24a2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/struct.ali.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/test.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1d3z.regular.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/standard.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/out.clans -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/mapping3.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/pdbout.txt -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/mapping2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/test2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2l01.v2.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/app.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/__pycache__/integrators.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/utils/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/hmm/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/nmr/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/alignment/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/alignment/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/clans/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/clans/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/mrc/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/mrc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/whatif/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/whatif/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/wwpdb/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/wwpdb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/whatif/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/whatif/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/nmr/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/utils/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/hmm/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/__pycache__/integrators.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/__pycache__/parameterized.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/ars.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/scalemixture.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/mixtures.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/rand.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/scalemixture.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/ars.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/maxent.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/__pycache__/parameterized.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/__pycache__/ensembles.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/__pycache__/wham.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/__pycache__/ensembles.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/rosetta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/__pycache__/rosetta.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/pseudocounts.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/__pycache__/pseudocounts.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/alignment.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/__pycache__/alignment.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/vasco.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/cs.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/fasta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/svg.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/hhpred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/mrc.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/noe.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/fasta.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/whatif.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/procheck.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/hhpred.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/cs.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/dssp.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/mrc.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/clans.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/wwpdb.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/clans.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/psipred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/dssp.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/noe.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/resources -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/resources/AtomConnectivity.xml -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/resources -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/resources -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/resources -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/hhfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/precision.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/hhsearch.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/buildhmm.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/embd.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/promix.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/helloworld.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/csfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/bfit.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/bfite.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/build.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/app.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/singlechain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/propagators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/multichain.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/neqsteppropagator.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/propagators.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/multichain.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/singlechain.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/propagators.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/neqsteppropagator.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/singlechain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/multichain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/propagators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/__pycache__/parameterized.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/ars.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/scalemixture.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/mixtures.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/rand.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/scalemixture.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/ars.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/maxent.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/core/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/__pycache__/parameterized.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/__pycache__/ensembles.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/__pycache__/wham.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/__pycache__/ensembles.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/plots.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/__pycache__/tsv.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/tsv.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/integrators.py to integrators.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/app.py to app.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/integrators.py to integrators.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/parameterized.py to parameterized.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/scalemixture.py to scalemixture.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/maxent.py to maxent.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/mixtures.py to mixtures.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/rand.py to rand.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/ars.py to ars.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/wham.py to wham.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/ensembles.py to ensembles.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io/__init__.py to __init__.cpython-313.pyc -/usr/lib/python3.13/dist-packages/csb/test/cases/io/__init__.py:482: SyntaxWarning: invalid escape sequence '\w' -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/rosetta.py to rosetta.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/pseudocounts.py to pseudocounts.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure/__init__.py to __init__.cpython-313.pyc -/usr/lib/python3.13/dist-packages/csb/bio/structure/__init__.py:2129: SyntaxWarning: invalid escape sequence '\s' -/usr/lib/python3.13/dist-packages/csb/bio/structure/__init__.py:2131: SyntaxWarning: invalid escape sequence '\s' -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/csfrag.py to csfrag.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/bfite.py to bfite.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/hhfrag.py to hhfrag.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/promix.py to promix.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/precision.py to precision.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/hhsearch.py to hhsearch.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/bfit.py to bfit.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/embd.py to embd.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/helloworld.py to helloworld.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/buildhmm.py to buildhmm.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/build.py to build.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/tsv.py to tsv.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/plots.py to plots.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/alignment.py to alignment.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/__init__.py to __init__.cpython-313.pyc /usr/lib/python3.13/dist-packages/csb/bio/sequence/__init__.py:566: SyntaxWarning: invalid escape sequence '\w' +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/psipred.py to psipred.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py to procheck.cpython-313.pyc +/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:31: SyntaxWarning: invalid escape sequence '\s' +/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:32: SyntaxWarning: invalid escape sequence '\d' +/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:33: SyntaxWarning: invalid escape sequence '\s' +/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:34: SyntaxWarning: invalid escape sequence '\s' +/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:35: SyntaxWarning: invalid escape sequence '\s' +/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:36: SyntaxWarning: invalid escape sequence '\s' +/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:37: SyntaxWarning: invalid escape sequence '\s' +/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:38: SyntaxWarning: invalid escape sequence '\s' +/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:39: SyntaxWarning: invalid escape sequence '\s' +/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:40: SyntaxWarning: invalid escape sequence '\s' byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/wwpdb.py to wwpdb.cpython-313.pyc /usr/lib/python3.13/dist-packages/csb/bio/io/wwpdb.py:1222: SyntaxWarning: invalid escape sequence '\d' -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/vasco.py to vasco.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/cs.py to cs.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/fasta.py to fasta.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/svg.py to svg.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/hhpred.py to hhpred.cpython-313.pyc /usr/lib/python3.13/dist-packages/csb/bio/io/hhpred.py:210: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.13/dist-packages/csb/bio/io/hhpred.py:260: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/csb/bio/io/hhpred.py:307: SyntaxWarning: invalid escape sequence '\-' +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/cs.py to cs.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/noe.py to noe.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/fasta.py to fasta.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/mrc.py to mrc.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/dssp.py to dssp.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/clans.py to clans.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py to whatif.cpython-313.pyc /usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py:32: SyntaxWarning: invalid escape sequence '\s' @@ -2679,57 +2695,77 @@ /usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py:34: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py:35: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py:36: SyntaxWarning: invalid escape sequence '\S' -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py to procheck.cpython-313.pyc -/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:31: SyntaxWarning: invalid escape sequence '\s' -/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:32: SyntaxWarning: invalid escape sequence '\d' -/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:33: SyntaxWarning: invalid escape sequence '\s' -/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:34: SyntaxWarning: invalid escape sequence '\s' -/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:35: SyntaxWarning: invalid escape sequence '\s' -/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:36: SyntaxWarning: invalid escape sequence '\s' -/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:37: SyntaxWarning: invalid escape sequence '\s' -/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:38: SyntaxWarning: invalid escape sequence '\s' -/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:39: SyntaxWarning: invalid escape sequence '\s' -/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:40: SyntaxWarning: invalid escape sequence '\s' -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/psipred.py to psipred.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/dssp.py to dssp.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/svg.py to svg.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/noe.py to noe.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/hhfrag.py to hhfrag.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/precision.py to precision.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/hhsearch.py to hhsearch.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/buildhmm.py to buildhmm.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/embd.py to embd.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/promix.py to promix.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/helloworld.py to helloworld.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/csfrag.py to csfrag.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/bfit.py to bfit.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/bfite.py to bfite.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/build.py to build.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/singlechain.py to singlechain.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/propagators.py to propagators.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/vasco.py to vasco.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/rosetta.py to rosetta.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure/__init__.py to __init__.cpython-313.pyc +/usr/lib/python3.13/dist-packages/csb/bio/structure/__init__.py:2129: SyntaxWarning: invalid escape sequence '\s' +/usr/lib/python3.13/dist-packages/csb/bio/structure/__init__.py:2131: SyntaxWarning: invalid escape sequence '\s' +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/pseudocounts.py to pseudocounts.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/integrators.py to integrators.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io/__init__.py to __init__.cpython-313.pyc +/usr/lib/python3.13/dist-packages/csb/test/cases/io/__init__.py:482: SyntaxWarning: invalid escape sequence '\w' +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/integrators.py to integrators.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/mixtures.py to mixtures.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/scalemixture.py to scalemixture.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/ars.py to ars.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/rand.py to rand.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/maxent.py to maxent.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/parameterized.py to parameterized.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/wham.py to wham.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/ensembles.py to ensembles.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/app.py to app.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/neqsteppropagator.py to neqsteppropagator.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/singlechain.py to singlechain.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/multichain.py to multichain.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/propagators.py to propagators.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/parameterized.py to parameterized.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/scalemixture.py to scalemixture.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/maxent.py to maxent.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/mixtures.py to mixtures.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/scalemixture.py to scalemixture.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/ars.py to ars.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/rand.py to rand.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__init__.py to __init__.cpython-313.pyc /usr/lib/python3.13/dist-packages/csb/statistics/__init__.py:341: SyntaxWarning: invalid escape sequence '\s' -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/rand.py to rand.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/ars.py to ars.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/maxent.py to maxent.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/parameterized.py to parameterized.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/wham.py to wham.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/ensembles.py to ensembles.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/plots.py to plots.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/tsv.py to tsv.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/__init__.py to __init__.cpython-313.pyc running install_egg_info Copying csb.egg-info to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb-1.2.5.egg-info Skipping SOURCES.txt @@ -2765,8 +2801,8 @@ dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'python3-csb' in '../python3-csb_1.2.5+dfsg-10_all.deb'. dpkg-deb: building package 'csb' in '../csb_1.2.5+dfsg-10_all.deb'. +dpkg-deb: building package 'python3-csb' in '../python3-csb_1.2.5+dfsg-10_all.deb'. dpkg-genbuildinfo --build=binary -O../python-csb_1.2.5+dfsg-10_i386.buildinfo dpkg-genchanges --build=binary -O../python-csb_1.2.5+dfsg-10_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -2774,12 +2810,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/72230/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/72230/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/16115 and its subdirectories -I: Current time: Thu Mar 13 05:28:10 -12 2025 -I: pbuilder-time-stamp: 1741886890 +I: removing directory /srv/workspace/pbuilder/72230 and its subdirectories +I: Current time: Thu Apr 16 13:53:36 +14 2026 +I: pbuilder-time-stamp: 1776297216