Diff of the two buildlogs: -- --- b1/build.log 2024-12-31 08:53:35.830236207 +0000 +++ b2/build.log 2024-12-31 09:10:46.767224914 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Dec 30 20:28:39 -12 2024 -I: pbuilder-time-stamp: 1735633719 +I: Current time: Tue Feb 3 05:16:36 +14 2026 +I: pbuilder-time-stamp: 1770045396 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -27,54 +27,86 @@ dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/4511/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/54833/tmp/hooks/D01_modify_environment starting +debug: Running on ionos16-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 2 15:16 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/54833/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/54833/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='e220249032484be6a668370e5521665f' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='4511' - PS1='# ' - PS2='> ' + INVOCATION_ID=a03bac8f1beb45abbd9f3ce7c31c094f + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=54833 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.D709SVUy/pbuilderrc_AbXn --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.D709SVUy/b1 --logfile b1/build.log racon_1.5.0-3.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.D709SVUy/pbuilderrc_ilyr --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.D709SVUy/b2 --logfile b2/build.log racon_1.5.0-3.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos2-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/4511/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/54833/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -198,7 +230,7 @@ Get: 70 http://deb.debian.org/debian unstable/main i386 libspoa-dev i386 4.1.4-2+b1 [9800 B] Get: 71 http://deb.debian.org/debian unstable/main i386 libthread-pool-dev i386 4.0.0-2 [7296 B] Get: 72 http://deb.debian.org/debian unstable/main i386 rampler i386 2.1.1-1 [22.5 kB] -Fetched 44.2 MB in 1s (49.6 MB/s) +Fetched 44.2 MB in 1s (76.7 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19844 files and directories currently installed.) @@ -501,7 +533,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes +I: user script /srv/workspace/pbuilder/54833/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/54833/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable @@ -527,7 +563,7 @@ -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done --- Configuring done (1.2s) +-- Configuring done (0.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -542,7 +578,7 @@ sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' dh_auto_build -O--buildsystem=cmake - cd obj-i686-linux-gnu && make -j11 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-i686-linux-gnu && make -j21 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu/CMakeFiles /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu//CMakeFiles/progress.marks @@ -554,16 +590,16 @@ make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' -[ 10%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o -[ 40%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o -[ 40%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o -[ 40%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o -/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/overlap.cpp.o -MF CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/reproducible-path/racon-1.5.0/src/overlap.cpp -[ 50%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o -/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp +[ 10%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o +[ 20%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/logger.cpp.o -MF CMakeFiles/racon.dir/src/logger.cpp.o.d -o CMakeFiles/racon.dir/src/logger.cpp.o -c /build/reproducible-path/racon-1.5.0/src/logger.cpp -/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/polisher.cpp.o -MF CMakeFiles/racon.dir/src/polisher.cpp.o.d -o CMakeFiles/racon.dir/src/polisher.cpp.o -c /build/reproducible-path/racon-1.5.0/src/polisher.cpp +[ 40%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o +[ 40%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o +/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp +/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/overlap.cpp.o -MF CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/reproducible-path/racon-1.5.0/src/overlap.cpp +[ 50%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o +/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp /build/reproducible-path/racon-1.5.0/src/overlap.cpp: In member function 'virtual void racon::Overlap::align_overlaps(const char*, uint32_t, const char*, uint32_t)': /build/reproducible-path/racon-1.5.0/src/overlap.cpp:219:48: warning: format '%zu' expects argument of type 'size_t', but argument 3 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 219 | "edlib unable to align pair (%zu x %zu)!\n", q_id_, t_id_); @@ -594,18 +630,18 @@ make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/depend make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/depend make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' -cd /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu/CMakeFiles/racon_test.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu/CMakeFiles/racon_exe.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' +cd /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu/CMakeFiles/racon_test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/build +make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' [ 70%] Building CXX object CMakeFiles/racon_exe.dir/src/main.cpp.o -/usr/bin/c++ -DVERSION=\"1.5.0\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c /build/reproducible-path/racon-1.5.0/src/main.cpp [ 80%] Building CXX object CMakeFiles/racon_test.dir/test/racon_test.cpp.o +/usr/bin/c++ -DVERSION=\"1.5.0\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c /build/reproducible-path/racon-1.5.0/src/main.cpp /usr/bin/c++ -DTEST_DATA=\"/build/reproducible-path/racon-1.5.0/test/data/\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/racon_test.dir/test/racon_test.cpp.o -MF CMakeFiles/racon_test.dir/test/racon_test.cpp.o.d -o CMakeFiles/racon_test.dir/test/racon_test.cpp.o -c /build/reproducible-path/racon-1.5.0/test/racon_test.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 @@ -628,119 +664,119 @@ [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError -[ OK ] RaconInitializeTest.PolisherTypeError (2 ms) +[ OK ] RaconInitializeTest.PolisherTypeError (1 ms) [ RUN ] RaconInitializeTest.WindowLengthError -[ OK ] RaconInitializeTest.WindowLengthError (1 ms) +[ OK ] RaconInitializeTest.WindowLengthError (0 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError [ OK ] RaconInitializeTest.SequencesPathExtensionError (1 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError -[ OK ] RaconInitializeTest.OverlapsPathExtensionError (6 ms) +[ OK ] RaconInitializeTest.OverlapsPathExtensionError (4 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError -[ OK ] RaconInitializeTest.TargetPathExtensionError (6 ms) -[----------] 5 tests from RaconInitializeTest (19 ms total) +[ OK ] RaconInitializeTest.TargetPathExtensionError (3 ms) +[----------] 5 tests from RaconInitializeTest (11 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities -[racon::Polisher::initialize] loaded target sequences 0.001447 s -[racon::Polisher::initialize] loaded sequences 0.049515 s -[racon::Polisher::initialize] loaded overlaps 0.001065 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.072556 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.111087 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.162508 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.199353 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.246455 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.288026 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.390007 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.440812 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.481176 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.517333 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.566378 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.608737 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.655531 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.677756 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.706852 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.784122 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.810980 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.850382 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.898865 s [racon::Polisher::initialize] aligning overlaps [====================] 0.930890 s -[racon::Polisher::initialize] transformed data into windows 0.095657 s -[racon::Polisher::polish] generating consensus [=> ] 0.645298 s [racon::Polisher::polish] generating consensus [==> ] 1.238874 s [racon::Polisher::polish] generating consensus [===> ] 1.728249 s [racon::Polisher::polish] generating consensus [====> ] 2.113171 s [racon::Polisher::polish] generating consensus [=====> ] 2.330478 s [racon::Polisher::polish] generating consensus [======> ] 2.557661 s [racon::Polisher::polish] generating consensus [=======> ] 2.760590 s [racon::Polisher::polish] generating consensus [========> ] 3.015305 s [racon::Polisher::polish] generating consensus [=========> ] 3.397013 s [racon::Polisher::polish] generating consensus [==========> ] 3.874255 s [racon::Polisher::polish] generating consensus [===========> ] 4.560467 s [racon::Polisher::polish] generating consensus [============> ] 5.473267 s [racon::Polisher::polish] generating consensus [=============> ] 6.699502 s [racon::Polisher::polish] generating consensus [==============> ] 7.954923 s [racon::Polisher::polish] generating consensus [===============> ] 8.559795 s [racon::Polisher::polish] generating consensus [================> ] 9.139813 s [racon::Polisher::polish] generating consensus [=================> ] 9.859668 s [racon::Polisher::polish] generating consensus [==================> ] 10.318433 s [racon::Polisher::polish] generating consensus [===================>] 10.837365 s [racon::Polisher::polish] generating consensus [====================] 13.140151 s -[racon::Polisher::] total = 14.263401 s -[ OK ] RaconPolishingTest.ConsensusWithQualities (14291 ms) +[racon::Polisher::initialize] loaded target sequences 0.000879 s +[racon::Polisher::initialize] loaded sequences 0.035574 s +[racon::Polisher::initialize] loaded overlaps 0.000619 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.040836 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.062485 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.089776 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.113000 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.136267 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.159251 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.216443 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.244551 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.267105 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.287223 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.314663 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.338247 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.364133 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.376386 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.393361 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.449196 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.465088 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.486143 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.534694 s [racon::Polisher::initialize] aligning overlaps [====================] 0.559016 s +[racon::Polisher::initialize] transformed data into windows 0.023070 s +[racon::Polisher::polish] generating consensus [=> ] 0.483804 s [racon::Polisher::polish] generating consensus [==> ] 0.910856 s [racon::Polisher::polish] generating consensus [===> ] 1.235002 s [racon::Polisher::polish] generating consensus [====> ] 1.500315 s [racon::Polisher::polish] generating consensus [=====> ] 1.704828 s [racon::Polisher::polish] generating consensus [======> ] 1.874888 s [racon::Polisher::polish] generating consensus [=======> ] 2.027113 s [racon::Polisher::polish] generating consensus [========> ] 2.214896 s [racon::Polisher::polish] generating consensus [=========> ] 2.501150 s [racon::Polisher::polish] generating consensus [==========> ] 2.798308 s [racon::Polisher::polish] generating consensus [===========> ] 3.339109 s [racon::Polisher::polish] generating consensus [============> ] 4.668903 s [racon::Polisher::polish] generating consensus [=============> ] 5.573281 s [racon::Polisher::polish] generating consensus [==============> ] 6.478508 s [racon::Polisher::polish] generating consensus [===============> ] 7.077305 s [racon::Polisher::polish] generating consensus [================> ] 7.524575 s [racon::Polisher::polish] generating consensus [=================> ] 8.064346 s [racon::Polisher::polish] generating consensus [==================> ] 8.383193 s [racon::Polisher::polish] generating consensus [===================>] 8.805416 s [racon::Polisher::polish] generating consensus [====================] 9.708167 s +[racon::Polisher::] total = 10.356263 s +[ OK ] RaconPolishingTest.ConsensusWithQualities (10369 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities -[racon::Polisher::initialize] loaded target sequences 0.001771 s -[racon::Polisher::initialize] loaded sequences 0.038261 s -[racon::Polisher::initialize] loaded overlaps 0.000583 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.067839 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.104002 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.183970 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.211965 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.241743 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.260270 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.344457 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.396771 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.431140 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.464523 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.509448 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.550177 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.620371 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.671583 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.727094 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.818839 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.842186 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.856515 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.884301 s [racon::Polisher::initialize] aligning overlaps [====================] 0.908336 s -[racon::Polisher::initialize] transformed data into windows 0.000835 s -[racon::Polisher::polish] generating consensus [=> ] 0.670269 s [racon::Polisher::polish] generating consensus [==> ] 1.442216 s [racon::Polisher::polish] generating consensus [===> ] 2.054256 s [racon::Polisher::polish] generating consensus [====> ] 2.538269 s [racon::Polisher::polish] generating consensus [=====> ] 2.822936 s [racon::Polisher::polish] generating consensus [======> ] 3.132868 s [racon::Polisher::polish] generating consensus [=======> ] 3.420239 s [racon::Polisher::polish] generating consensus [========> ] 3.729405 s [racon::Polisher::polish] generating consensus [=========> ] 4.174288 s [racon::Polisher::polish] generating consensus [==========> ] 4.969782 s [racon::Polisher::polish] generating consensus [===========> ] 5.818688 s [racon::Polisher::polish] generating consensus [============> ] 6.825934 s [racon::Polisher::polish] generating consensus [=============> ] 8.282996 s [racon::Polisher::polish] generating consensus [==============> ] 9.340309 s [racon::Polisher::polish] generating consensus [===============> ] 10.415666 s [racon::Polisher::polish] generating consensus [================> ] 11.397191 s [racon::Polisher::polish] generating consensus [=================> ] 12.335609 s [racon::Polisher::polish] generating consensus [==================> ] 12.926418 s [racon::Polisher::polish] generating consensus [===================>] 13.592675 s [racon::Polisher::polish] generating consensus [====================] 17.508069 s -[racon::Polisher::] total = 18.568725 s -[ OK ] RaconPolishingTest.ConsensusWithoutQualities (18603 ms) +[racon::Polisher::initialize] loaded target sequences 0.000476 s +[racon::Polisher::initialize] loaded sequences 0.015668 s +[racon::Polisher::initialize] loaded overlaps 0.000313 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.038683 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.070792 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.096090 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.123382 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.141782 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.153696 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.210327 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.238402 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.260864 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.280983 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.308335 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.331799 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.357645 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.369835 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.385972 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.428437 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.441970 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.469320 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.508216 s [racon::Polisher::initialize] aligning overlaps [====================] 0.529454 s +[racon::Polisher::initialize] transformed data into windows 0.000481 s +[racon::Polisher::polish] generating consensus [=> ] 0.490156 s [racon::Polisher::polish] generating consensus [==> ] 1.061684 s [racon::Polisher::polish] generating consensus [===> ] 1.480656 s [racon::Polisher::polish] generating consensus [====> ] 1.809628 s [racon::Polisher::polish] generating consensus [=====> ] 2.210778 s [racon::Polisher::polish] generating consensus [======> ] 2.415490 s [racon::Polisher::polish] generating consensus [=======> ] 2.622916 s [racon::Polisher::polish] generating consensus [========> ] 2.885558 s [racon::Polisher::polish] generating consensus [=========> ] 3.219793 s [racon::Polisher::polish] generating consensus [==========> ] 3.739019 s [racon::Polisher::polish] generating consensus [===========> ] 4.438223 s [racon::Polisher::polish] generating consensus [============> ] 5.170815 s [racon::Polisher::polish] generating consensus [=============> ] 6.260305 s [racon::Polisher::polish] generating consensus [==============> ] 7.081276 s [racon::Polisher::polish] generating consensus [===============> ] 7.905758 s [racon::Polisher::polish] generating consensus [================> ] 8.656394 s [racon::Polisher::polish] generating consensus [=================> ] 9.396104 s [racon::Polisher::polish] generating consensus [==================> ] 9.793220 s [racon::Polisher::polish] generating consensus [===================>] 10.409472 s [racon::Polisher::polish] generating consensus [====================] 13.258121 s +[racon::Polisher::] total = 13.829194 s +[ OK ] RaconPolishingTest.ConsensusWithoutQualities (13842 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments -[racon::Polisher::initialize] loaded target sequences 0.007792 s -[racon::Polisher::initialize] loaded sequences 0.050031 s -[racon::Polisher::initialize] loaded overlaps 0.069090 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.009009 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.009562 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.009582 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.009595 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.009612 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.009625 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.010163 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.010452 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.010469 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.010480 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.010491 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.010501 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.010511 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.010521 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.010532 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.010542 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.010552 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.010564 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.010578 s [racon::Polisher::initialize] aligning overlaps [====================] 0.010594 s -[racon::Polisher::initialize] transformed data into windows 0.081902 s -[racon::Polisher::polish] generating consensus [=> ] 0.663423 s [racon::Polisher::polish] generating consensus [==> ] 1.256254 s [racon::Polisher::polish] generating consensus [===> ] 1.862002 s [racon::Polisher::polish] generating consensus [====> ] 2.324076 s [racon::Polisher::polish] generating consensus [=====> ] 2.504413 s [racon::Polisher::polish] generating consensus [======> ] 2.900317 s [racon::Polisher::polish] generating consensus [=======> ] 3.161166 s [racon::Polisher::polish] generating consensus [========> ] 3.427178 s [racon::Polisher::polish] generating consensus [=========> ] 3.656377 s [racon::Polisher::polish] generating consensus [==========> ] 4.239850 s [racon::Polisher::polish] generating consensus [===========> ] 4.860051 s [racon::Polisher::polish] generating consensus [============> ] 5.755420 s [racon::Polisher::polish] generating consensus [=============> ] 6.864030 s [racon::Polisher::polish] generating consensus [==============> ] 8.075776 s [racon::Polisher::polish] generating consensus [===============> ] 9.198504 s [racon::Polisher::polish] generating consensus [================> ] 9.820312 s [racon::Polisher::polish] generating consensus [=================> ] 10.560277 s [racon::Polisher::polish] generating consensus [==================> ] 11.025093 s [racon::Polisher::polish] generating consensus [===================>] 11.452057 s [racon::Polisher::polish] generating consensus [====================] 12.919770 s -[racon::Polisher::] total = 13.332577 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (13424 ms) +[racon::Polisher::initialize] loaded target sequences 0.000467 s +[racon::Polisher::initialize] loaded sequences 0.033156 s +[racon::Polisher::initialize] loaded overlaps 0.019324 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.002423 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.002617 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.002749 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.002883 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.002897 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.002979 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.003072 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.003239 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.003300 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.003382 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.003498 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.003709 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.003791 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.003922 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.004064 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.004233 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.004293 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.004377 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.004492 s [racon::Polisher::initialize] aligning overlaps [====================] 0.004600 s +[racon::Polisher::initialize] transformed data into windows 0.020194 s +[racon::Polisher::polish] generating consensus [=> ] 0.470527 s [racon::Polisher::polish] generating consensus [==> ] 0.918041 s [racon::Polisher::polish] generating consensus [===> ] 1.315270 s [racon::Polisher::polish] generating consensus [====> ] 1.600571 s [racon::Polisher::polish] generating consensus [=====> ] 1.727331 s [racon::Polisher::polish] generating consensus [======> ] 1.865235 s [racon::Polisher::polish] generating consensus [=======> ] 2.043313 s [racon::Polisher::polish] generating consensus [========> ] 2.226845 s [racon::Polisher::polish] generating consensus [=========> ] 2.430938 s [racon::Polisher::polish] generating consensus [==========> ] 2.792610 s [racon::Polisher::polish] generating consensus [===========> ] 3.303637 s [racon::Polisher::polish] generating consensus [============> ] 3.898690 s [racon::Polisher::polish] generating consensus [=============> ] 4.720219 s [racon::Polisher::polish] generating consensus [==============> ] 5.646171 s [racon::Polisher::polish] generating consensus [===============> ] 6.293764 s [racon::Polisher::polish] generating consensus [================> ] 6.762333 s [racon::Polisher::polish] generating consensus [=================> ] 7.378224 s [racon::Polisher::polish] generating consensus [==================> ] 7.687435 s [racon::Polisher::polish] generating consensus [===================>] 7.987555 s [racon::Polisher::polish] generating consensus [====================] 9.581637 s +[racon::Polisher::] total = 9.686907 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (9700 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments -[racon::Polisher::initialize] loaded target sequences 0.000874 s -[racon::Polisher::initialize] loaded sequences 0.042889 s -[racon::Polisher::initialize] loaded overlaps 0.061398 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.007060 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.007430 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.007442 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.007451 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.007460 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.007470 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.007479 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.007488 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.007496 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.007504 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.007513 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.007521 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.007530 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.007538 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.007546 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.007555 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.007564 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.007573 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.007582 s [racon::Polisher::initialize] aligning overlaps [====================] 0.007592 s -[racon::Polisher::initialize] transformed data into windows 0.000803 s -[racon::Polisher::polish] generating consensus [=> ] 0.675093 s [racon::Polisher::polish] generating consensus [==> ] 1.415014 s [racon::Polisher::polish] generating consensus [===> ] 1.926979 s [racon::Polisher::polish] generating consensus [====> ] 2.395116 s [racon::Polisher::polish] generating consensus [=====> ] 2.755525 s [racon::Polisher::polish] generating consensus [======> ] 2.975481 s [racon::Polisher::polish] generating consensus [=======> ] 3.261350 s [racon::Polisher::polish] generating consensus [========> ] 3.723016 s [racon::Polisher::polish] generating consensus [=========> ] 4.097714 s [racon::Polisher::polish] generating consensus [==========> ] 4.907076 s [racon::Polisher::polish] generating consensus [===========> ] 5.686991 s [racon::Polisher::polish] generating consensus [============> ] 6.586024 s [racon::Polisher::polish] generating consensus [=============> ] 7.981014 s [racon::Polisher::polish] generating consensus [==============> ] 9.100418 s [racon::Polisher::polish] generating consensus [===============> ] 10.099249 s [racon::Polisher::polish] generating consensus [================> ] 11.010392 s [racon::Polisher::polish] generating consensus [=================> ] 11.934402 s [racon::Polisher::polish] generating consensus [==================> ] 12.444416 s [racon::Polisher::polish] generating consensus [===================>] 13.047019 s [racon::Polisher::polish] generating consensus [====================] 16.223932 s -[racon::Polisher::] total = 16.374106 s -[ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (16406 ms) +[racon::Polisher::initialize] loaded target sequences 0.000458 s +[racon::Polisher::initialize] loaded sequences 0.014741 s +[racon::Polisher::initialize] loaded overlaps 0.018502 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.001849 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.001942 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.002069 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.002224 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.002240 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.002335 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.002531 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.002673 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.002724 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.002804 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.002922 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.003120 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.003200 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.003333 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.003481 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.003654 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.003720 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.003865 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.004014 s [racon::Polisher::initialize] aligning overlaps [====================] 0.004140 s +[racon::Polisher::initialize] transformed data into windows 0.000474 s +[racon::Polisher::polish] generating consensus [=> ] 0.458288 s [racon::Polisher::polish] generating consensus [==> ] 0.973903 s [racon::Polisher::polish] generating consensus [===> ] 1.371696 s [racon::Polisher::polish] generating consensus [====> ] 1.674714 s [racon::Polisher::polish] generating consensus [=====> ] 1.864447 s [racon::Polisher::polish] generating consensus [======> ] 2.065565 s [racon::Polisher::polish] generating consensus [=======> ] 2.273153 s [racon::Polisher::polish] generating consensus [========> ] 2.562810 s [racon::Polisher::polish] generating consensus [=========> ] 2.851857 s [racon::Polisher::polish] generating consensus [==========> ] 3.343305 s [racon::Polisher::polish] generating consensus [===========> ] 3.889284 s [racon::Polisher::polish] generating consensus [============> ] 4.579961 s [racon::Polisher::polish] generating consensus [=============> ] 5.596504 s [racon::Polisher::polish] generating consensus [==============> ] 6.429739 s [racon::Polisher::polish] generating consensus [===============> ] 7.257804 s [racon::Polisher::polish] generating consensus [================> ] 7.994419 s [racon::Polisher::polish] generating consensus [=================> ] 8.659905 s [racon::Polisher::polish] generating consensus [==================> ] 9.050562 s [racon::Polisher::polish] generating consensus [===================>] 9.487304 s [racon::Polisher::polish] generating consensus [====================] 11.987167 s +[racon::Polisher::] total = 12.045173 s +[ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (12058 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow -[racon::Polisher::initialize] loaded target sequences 0.000933 s -[racon::Polisher::initialize] loaded sequences 0.497351 s -[racon::Polisher::initialize] loaded overlaps 0.036533 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.842309 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.879253 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.914556 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.618555 s [racon::Polisher::initialize] aligning overlaps [=====> ] 2.643994 s [racon::Polisher::initialize] aligning overlaps [======> ] 2.686564 s [racon::Polisher::initialize] aligning overlaps [=======> ] 2.713494 s [racon::Polisher::initialize] aligning overlaps [========> ] 2.842175 s [racon::Polisher::initialize] aligning overlaps [=========> ] 2.926198 s [racon::Polisher::initialize] aligning overlaps [==========> ] 2.939873 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.940496 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.998677 s [racon::Polisher::initialize] aligning overlaps [=============> ] 3.001253 s [racon::Polisher::initialize] aligning overlaps [==============> ] 3.001828 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.034539 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.035141 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.042462 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.142487 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.143091 s [racon::Polisher::initialize] aligning overlaps [====================] 3.143778 s -[racon::Polisher::initialize] transformed data into windows 0.080129 s -[racon::Polisher::polish] generating consensus [=> ] 2.262057 s [racon::Polisher::polish] generating consensus [==> ] 2.934105 s [racon::Polisher::polish] generating consensus [===> ] 4.157913 s [racon::Polisher::polish] generating consensus [====> ] 4.175595 s [racon::Polisher::polish] generating consensus [=====> ] 5.076484 s [racon::Polisher::polish] generating consensus [======> ] 5.076679 s [racon::Polisher::polish] generating consensus [=======> ] 5.833689 s [racon::Polisher::polish] generating consensus [========> ] 6.781896 s [racon::Polisher::polish] generating consensus [=========> ] 7.237710 s [racon::Polisher::polish] generating consensus [==========> ] 8.653650 s [racon::Polisher::polish] generating consensus [===========> ] 9.950399 s [racon::Polisher::polish] generating consensus [============> ] 11.575430 s [racon::Polisher::polish] generating consensus [=============> ] 14.564335 s [racon::Polisher::polish] generating consensus [==============> ] 15.691927 s [racon::Polisher::polish] generating consensus [===============> ] 17.269608 s [racon::Polisher::polish] generating consensus [================> ] 18.344289 s [racon::Polisher::polish] generating consensus [=================> ] 19.697819 s [racon::Polisher::polish] generating consensus [==================> ] 20.277570 s [racon::Polisher::polish] generating consensus [===================>] 21.597827 s [racon::Polisher::polish] generating consensus [====================] 27.060403 s -[racon::Polisher::] total = 31.037441 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (33980 ms) +[racon::Polisher::initialize] loaded target sequences 0.000477 s +[racon::Polisher::initialize] loaded sequences 0.033079 s +[racon::Polisher::initialize] loaded overlaps 0.000319 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.039817 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.065214 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.094296 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.114403 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.141841 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.165151 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.223109 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.252928 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.276354 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.297002 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.325903 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.350164 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.377226 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.390460 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.407005 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.442340 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.457079 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.478582 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.509243 s [racon::Polisher::initialize] aligning overlaps [====================] 0.533657 s +[racon::Polisher::initialize] transformed data into windows 0.021307 s +[racon::Polisher::polish] generating consensus [=> ] 1.689537 s [racon::Polisher::polish] generating consensus [==> ] 1.689572 s [racon::Polisher::polish] generating consensus [===> ] 4.780747 s [racon::Polisher::polish] generating consensus [====> ] 4.781074 s [racon::Polisher::polish] generating consensus [=====> ] 5.488723 s [racon::Polisher::polish] generating consensus [======> ] 5.488842 s [racon::Polisher::polish] generating consensus [=======> ] 6.041922 s [racon::Polisher::polish] generating consensus [========> ] 6.042132 s [racon::Polisher::polish] generating consensus [=========> ] 7.090400 s [racon::Polisher::polish] generating consensus [==========> ] 7.090430 s [racon::Polisher::polish] generating consensus [===========> ] 9.032750 s [racon::Polisher::polish] generating consensus [============> ] 9.032782 s [racon::Polisher::polish] generating consensus [=============> ] 12.069211 s [racon::Polisher::polish] generating consensus [==============> ] 12.069246 s [racon::Polisher::polish] generating consensus [===============> ] 14.049352 s [racon::Polisher::polish] generating consensus [================> ] 14.049431 s [racon::Polisher::polish] generating consensus [=================> ] 15.878018 s [racon::Polisher::polish] generating consensus [==================> ] 15.878049 s [racon::Polisher::polish] generating consensus [===================>] 17.279077 s [racon::Polisher::polish] generating consensus [====================] 19.098221 s +[racon::Polisher::] total = 19.715119 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (19778 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance -[racon::Polisher::initialize] loaded target sequences 0.001385 s -[racon::Polisher::initialize] loaded sequences 0.079379 s -[racon::Polisher::initialize] loaded overlaps 0.001068 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.088331 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.130765 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.178396 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.210385 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.255157 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.294189 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.391841 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.439798 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.478213 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.514385 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.559799 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.602612 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.644517 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.664893 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.692851 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.744040 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.766119 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.799724 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.855514 s [racon::Polisher::initialize] aligning overlaps [====================] 0.912393 s -[racon::Polisher::initialize] transformed data into windows 0.094933 s -[racon::Polisher::polish] generating consensus [=> ] 0.588012 s [racon::Polisher::polish] generating consensus [==> ] 1.573602 s [racon::Polisher::polish] generating consensus [===> ] 2.136563 s [racon::Polisher::polish] generating consensus [====> ] 2.574338 s [racon::Polisher::polish] generating consensus [=====> ] 2.741752 s [racon::Polisher::polish] generating consensus [======> ] 2.949892 s [racon::Polisher::polish] generating consensus [=======> ] 3.160766 s [racon::Polisher::polish] generating consensus [========> ] 3.406390 s [racon::Polisher::polish] generating consensus [=========> ] 3.607066 s [racon::Polisher::polish] generating consensus [==========> ] 4.185293 s [racon::Polisher::polish] generating consensus [===========> ] 4.678380 s [racon::Polisher::polish] generating consensus [============> ] 5.498987 s [racon::Polisher::polish] generating consensus [=============> ] 6.529567 s [racon::Polisher::polish] generating consensus [==============> ] 7.550854 s [racon::Polisher::polish] generating consensus [===============> ] 8.474818 s [racon::Polisher::polish] generating consensus [================> ] 9.459973 s [racon::Polisher::polish] generating consensus [=================> ] 10.145833 s [racon::Polisher::polish] generating consensus [==================> ] 10.556889 s [racon::Polisher::polish] generating consensus [===================>] 11.102668 s [racon::Polisher::polish] generating consensus [====================] 13.021478 s -[racon::Polisher::] total = 14.157004 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (14190 ms) +[racon::Polisher::initialize] loaded target sequences 0.000477 s +[racon::Polisher::initialize] loaded sequences 0.033246 s +[racon::Polisher::initialize] loaded overlaps 0.000300 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.039966 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.061488 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.088021 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.108894 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.134129 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.156990 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.213629 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.241780 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.264382 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.284527 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.312214 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.335667 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.361541 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.373808 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.389926 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.437418 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.453656 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.475901 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.508209 s [racon::Polisher::initialize] aligning overlaps [====================] 0.534617 s +[racon::Polisher::initialize] transformed data into windows 0.021495 s +[racon::Polisher::polish] generating consensus [=> ] 0.439457 s [racon::Polisher::polish] generating consensus [==> ] 0.849454 s [racon::Polisher::polish] generating consensus [===> ] 1.178077 s [racon::Polisher::polish] generating consensus [====> ] 1.438672 s [racon::Polisher::polish] generating consensus [=====> ] 1.581720 s [racon::Polisher::polish] generating consensus [======> ] 1.744433 s [racon::Polisher::polish] generating consensus [=======> ] 1.889819 s [racon::Polisher::polish] generating consensus [========> ] 2.069436 s [racon::Polisher::polish] generating consensus [=========> ] 2.340832 s [racon::Polisher::polish] generating consensus [==========> ] 2.635141 s [racon::Polisher::polish] generating consensus [===========> ] 3.118654 s [racon::Polisher::polish] generating consensus [============> ] 3.747473 s [racon::Polisher::polish] generating consensus [=============> ] 4.561957 s [racon::Polisher::polish] generating consensus [==============> ] 5.414777 s [racon::Polisher::polish] generating consensus [===============> ] 5.988057 s [racon::Polisher::polish] generating consensus [================> ] 6.403103 s [racon::Polisher::polish] generating consensus [=================> ] 6.904991 s [racon::Polisher::polish] generating consensus [==================> ] 7.206420 s [racon::Polisher::polish] generating consensus [===================>] 7.615413 s [racon::Polisher::polish] generating consensus [====================] 9.174090 s +[racon::Polisher::] total = 9.789758 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (9803 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities -[racon::Polisher::initialize] loaded target sequences 0.116096 s -[racon::Polisher::initialize] loaded sequences 0.087987 s -[racon::Polisher::initialize] loaded overlaps 0.016766 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.097593 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.169262 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.189275 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.233600 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.263409 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.304335 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.369089 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.409064 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.465603 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.511892 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.565573 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.645355 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.705579 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.773586 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.819398 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.890265 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.932797 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.961571 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.990384 s [racon::Polisher::initialize] aligning overlaps [====================] 1.051394 s -[racon::Polisher::initialize] transformed data into windows 0.099233 s -[racon::Polisher::polish] generating consensus [=> ] 0.418748 s [racon::Polisher::polish] generating consensus [==> ] 0.878930 s [racon::Polisher::polish] generating consensus [===> ] 1.292065 s [racon::Polisher::polish] generating consensus [====> ] 1.292677 s [racon::Polisher::polish] generating consensus [=====> ] 1.550833 s [racon::Polisher::polish] generating consensus [======> ] 1.731023 s [racon::Polisher::polish] generating consensus [=======> ] 1.996670 s [racon::Polisher::polish] generating consensus [========> ] 2.058879 s [racon::Polisher::polish] generating consensus [=========> ] 2.646681 s [racon::Polisher::polish] generating consensus [==========> ] 2.875967 s [racon::Polisher::polish] generating consensus [===========> ] 3.063342 s [racon::Polisher::polish] generating consensus [============> ] 3.134828 s [racon::Polisher::polish] generating consensus [=============> ] 3.366691 s [racon::Polisher::polish] generating consensus [==============> ] 3.366994 s [racon::Polisher::polish] generating consensus [===============> ] 3.914711 s [racon::Polisher::polish] generating consensus [================> ] 3.915003 s [racon::Polisher::polish] generating consensus [=================> ] 4.985279 s [racon::Polisher::polish] generating consensus [==================> ] 5.402920 s [racon::Polisher::polish] generating consensus [===================>] 5.774059 s [racon::Polisher::polish] generating consensus [====================] 5.819780 s -[racon::Polisher::] total = 7.192619 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (7221 ms) +[racon::Polisher::initialize] loaded target sequences 0.032926 s +[racon::Polisher::initialize] loaded sequences 0.034392 s +[racon::Polisher::initialize] loaded overlaps 0.009181 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.044809 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.082039 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.096081 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.119145 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.137896 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.163038 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.202338 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.224561 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.260820 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.290461 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.322038 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.369234 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.402475 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.443033 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.468162 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.510528 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.529819 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.556657 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.589383 s [racon::Polisher::initialize] aligning overlaps [====================] 0.620485 s +[racon::Polisher::initialize] transformed data into windows 0.024429 s +[racon::Polisher::polish] generating consensus [=> ] 0.297632 s [racon::Polisher::polish] generating consensus [==> ] 0.596094 s [racon::Polisher::polish] generating consensus [===> ] 0.899855 s [racon::Polisher::polish] generating consensus [====> ] 0.900168 s [racon::Polisher::polish] generating consensus [=====> ] 1.105144 s [racon::Polisher::polish] generating consensus [======> ] 1.240983 s [racon::Polisher::polish] generating consensus [=======> ] 1.438499 s [racon::Polisher::polish] generating consensus [========> ] 1.481801 s [racon::Polisher::polish] generating consensus [=========> ] 1.911555 s [racon::Polisher::polish] generating consensus [==========> ] 2.082809 s [racon::Polisher::polish] generating consensus [===========> ] 2.221988 s [racon::Polisher::polish] generating consensus [============> ] 2.272167 s [racon::Polisher::polish] generating consensus [=============> ] 2.442632 s [racon::Polisher::polish] generating consensus [==============> ] 2.442881 s [racon::Polisher::polish] generating consensus [===============> ] 2.830729 s [racon::Polisher::polish] generating consensus [================> ] 2.831017 s [racon::Polisher::polish] generating consensus [=================> ] 3.603957 s [racon::Polisher::polish] generating consensus [==================> ] 3.863167 s [racon::Polisher::polish] generating consensus [===================>] 4.167927 s [racon::Polisher::polish] generating consensus [====================] 4.206310 s +[racon::Polisher::] total = 4.928277 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (4943 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull -[racon::Polisher::initialize] loaded target sequences 0.055615 s -[racon::Polisher::initialize] loaded sequences 0.053922 s -[racon::Polisher::initialize] loaded overlaps 0.019639 s -[racon::Polisher::initialize] aligning overlaps [=> ] 1.081784 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.779895 s [racon::Polisher::initialize] aligning overlaps [===> ] 2.429051 s [racon::Polisher::initialize] aligning overlaps [====> ] 3.363997 s [racon::Polisher::initialize] aligning overlaps [=====> ] 4.181752 s [racon::Polisher::initialize] aligning overlaps [======> ] 7.421941 s [racon::Polisher::initialize] aligning overlaps [=======> ] 9.394098 s [racon::Polisher::initialize] aligning overlaps [========> ] 10.548365 s [racon::Polisher::initialize] aligning overlaps [=========> ] 11.802252 s [racon::Polisher::initialize] aligning overlaps [==========> ] 12.677911 s [racon::Polisher::initialize] aligning overlaps [===========> ] 13.390316 s [racon::Polisher::initialize] aligning overlaps [============> ] 14.483347 s [racon::Polisher::initialize] aligning overlaps [=============> ] 15.666307 s [racon::Polisher::initialize] aligning overlaps [==============> ] 16.634191 s [racon::Polisher::initialize] aligning overlaps [===============> ] 17.781741 s [racon::Polisher::initialize] aligning overlaps [================> ] 18.624988 s [racon::Polisher::initialize] aligning overlaps [=================> ] 19.169871 s [racon::Polisher::initialize] aligning overlaps [==================> ] 19.693906 s [racon::Polisher::initialize] aligning overlaps [===================>] 20.022000 s [racon::Polisher::initialize] aligning overlaps [====================] 20.313849 s -[racon::Polisher::initialize] transformed data into windows 2.275696 s -[racon::Polisher::polish] generating consensus [=> ] 22.181034 s [racon::Polisher::polish] generating consensus [==> ] 37.925089 s [racon::Polisher::polish] generating consensus [===> ] 53.929273 s [racon::Polisher::polish] generating consensus [====> ] 67.406820 s [racon::Polisher::polish] generating consensus [=====> ] 81.307799 s [racon::Polisher::polish] generating consensus [======> ] 97.604180 s [racon::Polisher::polish] generating consensus [=======> ] 114.855472 s [racon::Polisher::polish] generating consensus [========> ] 128.169353 s [racon::Polisher::polish] generating consensus [=========> ] 143.918178 s [racon::Polisher::polish] generating consensus [==========> ] 162.248759 s [racon::Polisher::polish] generating consensus [===========> ] 177.394151 s [racon::Polisher::polish] generating consensus [============> ] 197.540471 s [racon::Polisher::polish] generating consensus [=============> ] 213.531865 s [racon::Polisher::polish] generating consensus [==============> ] 230.414544 s [racon::Polisher::polish] generating consensus [===============> ] 248.762895 s [racon::Polisher::polish] generating consensus [================> ] 259.929907 s [racon::Polisher::polish] generating consensus [=================> ] 279.973941 s [racon::Polisher::polish] generating consensus [==================> ] 299.383525 s [racon::Polisher::polish] generating consensus [===================>] 316.987813 s [racon::Polisher::polish] generating consensus [====================] 331.162630 s -[racon::Polisher::] total = 355.873109 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (355913 ms) +[racon::Polisher::initialize] loaded target sequences 0.032981 s +[racon::Polisher::initialize] loaded sequences 0.033653 s +[racon::Polisher::initialize] loaded overlaps 0.007812 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.652581 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.087695 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.500834 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.100252 s [racon::Polisher::initialize] aligning overlaps [=====> ] 2.641653 s [racon::Polisher::initialize] aligning overlaps [======> ] 2.980786 s [racon::Polisher::initialize] aligning overlaps [=======> ] 3.455365 s [racon::Polisher::initialize] aligning overlaps [========> ] 4.069165 s [racon::Polisher::initialize] aligning overlaps [=========> ] 4.673471 s [racon::Polisher::initialize] aligning overlaps [==========> ] 5.182234 s [racon::Polisher::initialize] aligning overlaps [===========> ] 5.600629 s [racon::Polisher::initialize] aligning overlaps [============> ] 6.212385 s [racon::Polisher::initialize] aligning overlaps [=============> ] 6.840330 s [racon::Polisher::initialize] aligning overlaps [==============> ] 7.442790 s [racon::Polisher::initialize] aligning overlaps [===============> ] 8.075796 s [racon::Polisher::initialize] aligning overlaps [================> ] 8.789921 s [racon::Polisher::initialize] aligning overlaps [=================> ] 9.513949 s [racon::Polisher::initialize] aligning overlaps [==================> ] 10.166746 s [racon::Polisher::initialize] aligning overlaps [===================>] 10.818338 s [racon::Polisher::initialize] aligning overlaps [====================] 11.201227 s +[racon::Polisher::initialize] transformed data into windows 0.591498 s +[racon::Polisher::polish] generating consensus [=> ] 15.837487 s [racon::Polisher::polish] generating consensus [==> ] 27.238509 s [racon::Polisher::polish] generating consensus [===> ] 39.808101 s [racon::Polisher::polish] generating consensus [====> ] 50.050160 s [racon::Polisher::polish] generating consensus [=====> ] 60.901705 s [racon::Polisher::polish] generating consensus [======> ] 74.109171 s [racon::Polisher::polish] generating consensus [=======> ] 88.224404 s [racon::Polisher::polish] generating consensus [========> ] 98.536753 s [racon::Polisher::polish] generating consensus [=========> ] 111.712390 s [racon::Polisher::polish] generating consensus [==========> ] 126.600657 s [racon::Polisher::polish] generating consensus [===========> ] 139.039455 s [racon::Polisher::polish] generating consensus [============> ] 153.170136 s [racon::Polisher::polish] generating consensus [=============> ] 165.289637 s [racon::Polisher::polish] generating consensus [==============> ] 178.007148 s [racon::Polisher::polish] generating consensus [===============> ] 192.837162 s [racon::Polisher::polish] generating consensus [================> ] 201.147104 s [racon::Polisher::polish] generating consensus [=================> ] 216.921412 s [racon::Polisher::polish] generating consensus [==================> ] 230.751479 s [racon::Polisher::polish] generating consensus [===================>] 243.968900 s [racon::Polisher::polish] generating consensus [====================] 250.933503 s +[racon::Polisher::] total = 262.803982 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (262821 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull -[racon::Polisher::initialize] loaded target sequences 0.241484 s -[racon::Polisher::initialize] loaded sequences 0.077402 s -[racon::Polisher::initialize] loaded overlaps 0.020680 s -[racon::Polisher::initialize] aligning overlaps [=> ] 1.438057 s [racon::Polisher::initialize] aligning overlaps [==> ] 2.156765 s [racon::Polisher::initialize] aligning overlaps [===> ] 3.009224 s [racon::Polisher::initialize] aligning overlaps [====> ] 4.088924 s [racon::Polisher::initialize] aligning overlaps [=====> ] 5.005320 s [racon::Polisher::initialize] aligning overlaps [======> ] 5.628218 s [racon::Polisher::initialize] aligning overlaps [=======> ] 6.440908 s [racon::Polisher::initialize] aligning overlaps [========> ] 7.533061 s [racon::Polisher::initialize] aligning overlaps [=========> ] 8.860264 s [racon::Polisher::initialize] aligning overlaps [==========> ] 10.095104 s [racon::Polisher::initialize] aligning overlaps [===========> ] 10.861757 s [racon::Polisher::initialize] aligning overlaps [============> ] 12.726959 s [racon::Polisher::initialize] aligning overlaps [=============> ] 13.938194 s [racon::Polisher::initialize] aligning overlaps [==============> ] 15.208961 s [racon::Polisher::initialize] aligning overlaps [===============> ] 16.661986 s [racon::Polisher::initialize] aligning overlaps [================> ] 18.323857 s [racon::Polisher::initialize] aligning overlaps [=================> ] 20.068980 s [racon::Polisher::initialize] aligning overlaps [==================> ] 21.081400 s [racon::Polisher::initialize] aligning overlaps [===================>] 22.647466 s [racon::Polisher::initialize] aligning overlaps [====================] 22.933551 s -[racon::Polisher::initialize] transformed data into windows 0.033139 s -[racon::Polisher::polish] generating consensus [=> ] 30.809157 s [racon::Polisher::polish] generating consensus [==> ] 52.692700 s [racon::Polisher::polish] generating consensus [===> ] 75.211940 s [racon::Polisher::polish] generating consensus [====> ] 92.327531 s [racon::Polisher::polish] generating consensus [=====> ] 112.742204 s [racon::Polisher::polish] generating consensus [======> ] 135.858337 s [racon::Polisher::polish] generating consensus [=======> ] 164.607453 s [racon::Polisher::polish] generating consensus [========> ] 188.383558 s [racon::Polisher::polish] generating consensus [=========> ] 216.647461 s [racon::Polisher::polish] generating consensus [==========> ] 251.435516 s [racon::Polisher::polish] generating consensus [===========> ] 276.181704 s [racon::Polisher::polish] generating consensus [============> ] 310.135687 s [racon::Polisher::polish] generating consensus [=============> ] 336.443278 s [racon::Polisher::polish] generating consensus [==============> ] 369.992569 s [racon::Polisher::polish] generating consensus [===============> ] 394.847347 s [racon::Polisher::polish] generating consensus [================> ] 408.007520 s [racon::Polisher::polish] generating consensus [=================> ] 445.439493 s [racon::Polisher::polish] generating consensus [==================> ] 473.964018 s [racon::Polisher::polish] generating consensus [===================>] 498.612667 s [racon::Polisher::polish] generating consensus [====================] 520.171746 s -[racon::Polisher::] total = 544.102957 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (544402 ms) +[racon::Polisher::initialize] loaded target sequences 0.018858 s +[racon::Polisher::initialize] loaded sequences 0.017058 s +[racon::Polisher::initialize] loaded overlaps 0.007942 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.643658 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.113044 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.536087 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.132761 s [racon::Polisher::initialize] aligning overlaps [=====> ] 2.638030 s [racon::Polisher::initialize] aligning overlaps [======> ] 2.976238 s [racon::Polisher::initialize] aligning overlaps [=======> ] 3.444321 s [racon::Polisher::initialize] aligning overlaps [========> ] 4.066545 s [racon::Polisher::initialize] aligning overlaps [=========> ] 4.624287 s [racon::Polisher::initialize] aligning overlaps [==========> ] 5.187036 s [racon::Polisher::initialize] aligning overlaps [===========> ] 5.607293 s [racon::Polisher::initialize] aligning overlaps [============> ] 6.230169 s [racon::Polisher::initialize] aligning overlaps [=============> ] 6.871029 s [racon::Polisher::initialize] aligning overlaps [==============> ] 7.392694 s [racon::Polisher::initialize] aligning overlaps [===============> ] 8.141093 s [racon::Polisher::initialize] aligning overlaps [================> ] 8.802354 s [racon::Polisher::initialize] aligning overlaps [=================> ] 9.378069 s [racon::Polisher::initialize] aligning overlaps [==================> ] 9.997230 s [racon::Polisher::initialize] aligning overlaps [===================>] 10.645853 s [racon::Polisher::initialize] aligning overlaps [====================] 11.100600 s +[racon::Polisher::initialize] transformed data into windows 0.015405 s +[racon::Polisher::polish] generating consensus [=> ] 22.796479 s [racon::Polisher::polish] generating consensus [==> ] 38.810178 s [racon::Polisher::polish] generating consensus [===> ] 54.968601 s [racon::Polisher::polish] generating consensus [====> ] 67.670795 s [racon::Polisher::polish] generating consensus [=====> ] 84.312012 s [racon::Polisher::polish] generating consensus [======> ] 102.765076 s [racon::Polisher::polish] generating consensus [=======> ] 120.994897 s [racon::Polisher::polish] generating consensus [========> ] 135.641731 s [racon::Polisher::polish] generating consensus [=========> ] 153.641578 s [racon::Polisher::polish] generating consensus [==========> ] 175.328789 s [racon::Polisher::polish] generating consensus [===========> ] 193.293915 s [racon::Polisher::polish] generating consensus [============> ] 211.292815 s [racon::Polisher::polish] generating consensus [=============> ] 228.857181 s [racon::Polisher::polish] generating consensus [==============> ] 246.622367 s [racon::Polisher::polish] generating consensus [===============> ] 263.950548 s [racon::Polisher::polish] generating consensus [================> ] 273.827823 s [racon::Polisher::polish] generating consensus [=================> ] 296.865747 s [racon::Polisher::polish] generating consensus [==================> ] 318.807435 s [racon::Polisher::polish] generating consensus [===================>] 340.154999 s [racon::Polisher::polish] generating consensus [====================] 352.542768 s +[racon::Polisher::] total = 363.706019 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (363728 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap -[racon::Polisher::initialize] loaded target sequences 0.302912 s -[racon::Polisher::initialize] loaded sequences 0.703981 s -[racon::Polisher::initialize] loaded overlaps 0.020558 s -[racon::Polisher::initialize] aligning overlaps [=> ] 1.655968 s [racon::Polisher::initialize] aligning overlaps [==> ] 2.428996 s [racon::Polisher::initialize] aligning overlaps [===> ] 3.151608 s [racon::Polisher::initialize] aligning overlaps [====> ] 4.164966 s [racon::Polisher::initialize] aligning overlaps [=====> ] 5.029405 s [racon::Polisher::initialize] aligning overlaps [======> ] 5.619446 s [racon::Polisher::initialize] aligning overlaps [=======> ] 6.460065 s [racon::Polisher::initialize] aligning overlaps [========> ] 7.558783 s [racon::Polisher::initialize] aligning overlaps [=========> ] 8.540221 s [racon::Polisher::initialize] aligning overlaps [==========> ] 9.536133 s [racon::Polisher::initialize] aligning overlaps [===========> ] 10.284724 s [racon::Polisher::initialize] aligning overlaps [============> ] 11.375611 s [racon::Polisher::initialize] aligning overlaps [=============> ] 12.486935 s [racon::Polisher::initialize] aligning overlaps [==============> ] 13.459613 s [racon::Polisher::initialize] aligning overlaps [===============> ] 14.571858 s [racon::Polisher::initialize] aligning overlaps [================> ] 15.561580 s [racon::Polisher::initialize] aligning overlaps [=================> ] 16.581757 s [racon::Polisher::initialize] aligning overlaps [==================> ] 17.633489 s [racon::Polisher::initialize] aligning overlaps [===================>] 18.747637 s [racon::Polisher::initialize] aligning overlaps [====================] 19.092665 s -[racon::Polisher::initialize] transformed data into windows 2.231842 s -[racon::Polisher::polish] generating consensus [=> ] 20.646404 s [racon::Polisher::polish] generating consensus [==> ] 36.533093 s [racon::Polisher::polish] generating consensus [===> ] 55.262236 s [racon::Polisher::polish] generating consensus [====> ] 69.038819 s [racon::Polisher::polish] generating consensus [=====> ] 83.618272 s [racon::Polisher::polish] generating consensus [======> ] 100.766304 s [racon::Polisher::polish] generating consensus [=======> ] 118.716547 s [racon::Polisher::polish] generating consensus [========> ] 131.553566 s [racon::Polisher::polish] generating consensus [=========> ] 148.308083 s [racon::Polisher::polish] generating consensus [==========> ] 167.630365 s [racon::Polisher::polish] generating consensus [===========> ] 182.850924 s [racon::Polisher::polish] generating consensus [============> ] 201.747579 s [racon::Polisher::polish] generating consensus [=============> ] 218.477437 s [racon::Polisher::polish] generating consensus [==============> ] 237.894350 s [racon::Polisher::polish] generating consensus [===============> ] 256.882333 s [racon::Polisher::polish] generating consensus [================> ] 267.407728 s [racon::Polisher::polish] generating consensus [=================> ] 289.654313 s [racon::Polisher::polish] generating consensus [==================> ] 310.823803 s [racon::Polisher::polish] generating consensus [===================>] 337.766300 s [racon::Polisher::polish] generating consensus [====================] 351.644344 s -[racon::Polisher::] total = 374.040769 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (374196 ms) -[----------] 10 tests from RaconPolishingTest (1392657 ms total) +[racon::Polisher::initialize] loaded target sequences 0.064124 s +[racon::Polisher::initialize] loaded sequences 0.057010 s +[racon::Polisher::initialize] loaded overlaps 0.016560 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.684554 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.121171 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.500466 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.084007 s [racon::Polisher::initialize] aligning overlaps [=====> ] 2.576682 s [racon::Polisher::initialize] aligning overlaps [======> ] 2.917755 s [racon::Polisher::initialize] aligning overlaps [=======> ] 3.449974 s [racon::Polisher::initialize] aligning overlaps [========> ] 4.113143 s [racon::Polisher::initialize] aligning overlaps [=========> ] 4.954408 s [racon::Polisher::initialize] aligning overlaps [==========> ] 5.801386 s [racon::Polisher::initialize] aligning overlaps [===========> ] 6.491189 s [racon::Polisher::initialize] aligning overlaps [============> ] 7.508446 s [racon::Polisher::initialize] aligning overlaps [=============> ] 8.487233 s [racon::Polisher::initialize] aligning overlaps [==============> ] 9.103298 s [racon::Polisher::initialize] aligning overlaps [===============> ] 9.799465 s [racon::Polisher::initialize] aligning overlaps [================> ] 10.487354 s [racon::Polisher::initialize] aligning overlaps [=================> ] 11.137185 s [racon::Polisher::initialize] aligning overlaps [==================> ] 11.800884 s [racon::Polisher::initialize] aligning overlaps [===================>] 12.501526 s [racon::Polisher::initialize] aligning overlaps [====================] 12.712053 s +[racon::Polisher::initialize] transformed data into windows 0.591461 s +[racon::Polisher::polish] generating consensus [=> ] 16.537248 s [racon::Polisher::polish] generating consensus [==> ] 28.014672 s [racon::Polisher::polish] generating consensus [===> ] 40.517827 s [racon::Polisher::polish] generating consensus [====> ] 50.701056 s [racon::Polisher::polish] generating consensus [=====> ] 61.443357 s [racon::Polisher::polish] generating consensus [======> ] 74.332377 s [racon::Polisher::polish] generating consensus [=======> ] 87.636632 s [racon::Polisher::polish] generating consensus [========> ] 97.224147 s [racon::Polisher::polish] generating consensus [=========> ] 109.723944 s [racon::Polisher::polish] generating consensus [==========> ] 124.391618 s [racon::Polisher::polish] generating consensus [===========> ] 136.039357 s [racon::Polisher::polish] generating consensus [============> ] 149.458916 s [racon::Polisher::polish] generating consensus [=============> ] 161.869500 s [racon::Polisher::polish] generating consensus [==============> ] 175.598606 s [racon::Polisher::polish] generating consensus [===============> ] 190.369057 s [racon::Polisher::polish] generating consensus [================> ] 198.050248 s [racon::Polisher::polish] generating consensus [=================> ] 213.289248 s [racon::Polisher::polish] generating consensus [==================> ] 228.288298 s [racon::Polisher::polish] generating consensus [===================>] 242.341825 s [racon::Polisher::polish] generating consensus [====================] 248.718286 s +[racon::Polisher::] total = 262.162606 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (262182 ms) +[----------] 10 tests from RaconPolishingTest (969266 ms total) [----------] Global test environment tear-down -[==========] 15 tests from 2 test suites ran. (1392678 ms total) +[==========] 15 tests from 2 test suites ran. (969278 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake - cd obj-i686-linux-gnu && make -j11 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-i686-linux-gnu && make -j21 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -773,8 +809,8 @@ dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake -dpkg-deb: building package 'racon' in '../racon_1.5.0-3_i386.deb'. dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-3_i386.deb'. +dpkg-deb: building package 'racon' in '../racon_1.5.0-3_i386.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-3_i386.buildinfo dpkg-genchanges --build=binary -O../racon_1.5.0-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -782,12 +818,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/54833/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/54833/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/4511 and its subdirectories -I: Current time: Mon Dec 30 20:53:33 -12 2024 -I: pbuilder-time-stamp: 1735635213 +I: removing directory /srv/workspace/pbuilder/54833 and its subdirectories +I: Current time: Tue Feb 3 05:33:43 +14 2026 +I: pbuilder-time-stamp: 1770046423