I: pbuilder: network access will be disabled during build I: Current time: Thu Apr 13 20:17:50 -12 2023 I: pbuilder-time-stamp: 1681460270 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [cbflib_0.9.7+dfsg1-2.dsc] I: copying [./cbflib_0.9.7+dfsg1.orig.tar.xz] I: copying [./cbflib_0.9.7+dfsg1-2.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Aug 10 05:01:05 2022 -12 gpgv: using RSA key D9B453B799B8830D945E6A0A5BF54E5E12B900BB gpgv: issuer "picca@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./cbflib_0.9.7+dfsg1-2.dsc: no acceptable signature found dpkg-source: info: extracting cbflib in cbflib-0.9.7+dfsg1 dpkg-source: info: unpacking cbflib_0.9.7+dfsg1.orig.tar.xz dpkg-source: info: unpacking cbflib_0.9.7+dfsg1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-makefile-fix-Get-system-HDF5-config-from-pkg-config.patch dpkg-source: info: applying 0002-makefile-fix-Fix-CBFLIB_DONT_USE_LOCAL_TIFF-config-v.patch dpkg-source: info: applying 0003-makefile-fix-Allow-disabling-PyCBF-from-env-with-NOP.patch dpkg-source: info: applying 0004-makefile-fix-Install-libs-to-CBF_PREFIX-INSTALL_LIB.patch dpkg-source: info: applying 0005-makefile-fix-Install-lib-to-SOVERSION-and-add-symlin.patch dpkg-source: info: applying 0006-makefile-fix-Allow-disabling-libimg-and-libfcb-build.patch dpkg-source: info: applying 0007-makefile-fix-Do-not-link-example-progs-w.-libimg.patch dpkg-source: info: applying 0008-makefile-fix-Add-SONAME-to-linker-flags.patch dpkg-source: info: applying 0009-makefile-fix-Pick-up-CFLAGS-and-LDFLAGS-from-the-env.patch dpkg-source: info: applying 0010-makefile-fix-Prepend-CPPFLAGS-value-to-CFLAGS.patch dpkg-source: info: applying 0011-makefile-fix-Add-LDFLAGS-to-SOLDFLAGS-to-pick-up-har.patch dpkg-source: info: applying 0013-makefile-deb-Use-DESTDIR-usr-as-CBF_PREFIX.patch dpkg-source: info: applying 0014-makefile-deb-Do-not-build-tiff2cbf.patch dpkg-source: info: applying 0016-add-missing-LdFLAG-to-cbf_testxfelread.patch dpkg-source: info: applying 0017-Added-an-extra_compile_args-to-setup.py.patch dpkg-source: info: applying 0018-fix-the-FTBFS-with-missing-m4-Makefile.m4.patch dpkg-source: info: applying 0018-do-not-install-pycifrw-files.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1993396/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='5a6c1dea983e455899a0890fa5f619cc' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1993396' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.M34Cq31K/pbuilderrc_tPAB --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.M34Cq31K/b1 --logfile b1/build.log cbflib_0.9.7+dfsg1-2.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Feb 12 08:05 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Feb 12 08:05 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 04:31 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar -rwxr-xr-x 1 root root 14520 Nov 2 04:31 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/1993396/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, dh-sequence-python3, libhdf5-dev, pkg-config, python3-all-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libbrotli1{a} libcurl4{a} libcurl4-openssl-dev{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libicu72{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libpkgconf3{a} libpsl5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libssl-dev{a} libsub-override-perl{a} libsz2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 87 newly installed, 0 to remove and 0 not upgraded. Need to get 43.6 MB of archives. After unpacking 177 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 11 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.1+b3 [687 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-2 [131 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 dh-python all 5.20230130 [104 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 hdf5-helpers amd64 1.10.8+repack1-1 [27.9 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 libaec0 amd64 1.0.6-1+b1 [21.1 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 libsz2 amd64 1.0.6-1+b1 [7804 B] Get: 48 http://deb.debian.org/debian bookworm/main amd64 libaec-dev amd64 1.0.6-1+b1 [19.9 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-8 [386 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 libcurl4-openssl-dev amd64 7.88.1-8 [486 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libhdf5-103-1 amd64 1.10.8+repack1-1 [1237 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 libhdf5-cpp-103-1 amd64 1.10.8+repack1-1 [128 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 libhdf5-fortran-102 amd64 1.10.8+repack1-1 [93.3 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 libhdf5-hl-100 amd64 1.10.8+repack1-1 [67.8 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 libhdf5-hl-fortran-100 amd64 1.10.8+repack1-1 [44.5 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 libhdf5-hl-cpp-100 amd64 1.10.8+repack1-1 [25.5 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-2 [290 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 libjpeg-dev amd64 1:2.1.5-2 [71.8 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 libssl-dev amd64 3.0.8-1 [2427 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 libhdf5-dev amd64 1.10.8+repack1-1 [2615 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 76 http://deb.debian.org/debian bookworm/main amd64 libpkgconf3 amd64 1.8.1-1 [36.1 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6 [1988 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6 [4738 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get: 80 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.11.2-1+b1 [1068 B] Get: 81 http://deb.debian.org/debian bookworm/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB] Get: 82 http://deb.debian.org/debian bookworm/main amd64 pkgconf amd64 1.8.1-1 [25.9 kB] Get: 83 http://deb.debian.org/debian bookworm/main amd64 pkg-config amd64 1.8.1-1 [13.7 kB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get: 85 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6 [615 kB] Get: 86 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get: 87 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.11.2-1+b1 [1072 B] Fetched 43.6 MB in 5s (9072 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. 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Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20346 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.2-1+b1_amd64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ... 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Unpacking pkgconf:amd64 (1.8.1-1) ... Selecting previously unselected package pkg-config:amd64. Preparing to unpack .../72-pkg-config_1.8.1-1_amd64.deb ... Unpacking pkg-config:amd64 (1.8.1-1) ... Selecting previously unselected package python3-all. Preparing to unpack .../73-python3-all_3.11.2-1+b1_amd64.deb ... Unpacking python3-all (3.11.2-1+b1) ... Selecting previously unselected package python3.11-dev. Preparing to unpack .../74-python3.11-dev_3.11.2-6_amd64.deb ... Unpacking python3.11-dev (3.11.2-6) ... Selecting previously unselected package python3-dev. Preparing to unpack .../75-python3-dev_3.11.2-1+b1_amd64.deb ... Unpacking python3-dev (3.11.2-1+b1) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../76-python3-all-dev_3.11.2-1+b1_amd64.deb ... Unpacking python3-all-dev (3.11.2-1+b1) ... Setting up media-types (10.0.0) ... Setting up libpipeline1:amd64 (1.5.7-1) ... Setting up libpsl5:amd64 (0.21.2-1) ... 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Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/cbflib-0.9.7+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cbflib_0.9.7+dfsg1-2_source.changes dpkg-buildpackage: info: source package cbflib dpkg-buildpackage: info: source version 0.9.7+dfsg1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Picca Frédéric-Emmanuel dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --no-parallel dh_auto_clean -O--no-parallel make -j1 distclean make[1]: Entering directory '/build/cbflib-0.9.7+dfsg1' ./.undosymlinks make[1]: Leaving directory '/build/cbflib-0.9.7+dfsg1' debian/rules execute_after_dh_auto_clean-arch make[1]: Entering directory '/build/cbflib-0.9.7+dfsg1' /usr/bin/make 'C++:=$(CXX)' /build/cbflib-0.9.7+dfsg1/pycbf/setup.py make[2]: Entering directory '/build/cbflib-0.9.7+dfsg1' (m4 -P -Dregexlib= -Dregexlib2= \ -Ddefine_macros="('SWIG_PYTHON_STRICT_BYTE_CHAR', None)" \ -Dextra_compile_args=-I/usr/include/hdf5/serial \ -Dregexlibdir=/build/cbflib-0.9.7+dfsg1/lib -Dhdf5_prefix= \ /build/cbflib-0.9.7+dfsg1/m4/setup_py.m4 > /build/cbflib-0.9.7+dfsg1/pycbf/setup.py) make[2]: Leaving directory '/build/cbflib-0.9.7+dfsg1' dh_auto_clean --buildsystem=pybuild --sourcedirectory=pycbf I: pybuild base:240: python3.11 setup.py clean /build/cbflib-0.9.7+dfsg1/pycbf/setup.py:7: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup, Extension running clean removing '/build/cbflib-0.9.7+dfsg1/.pybuild/cpython3_3.11_pycbf/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -f pycbf/setup.py make[1]: Leaving directory '/build/cbflib-0.9.7+dfsg1' dh_autoreconf_clean -O--no-parallel dh_clean -O--no-parallel debian/rules binary dh binary --no-parallel dh_update_autotools_config -O--no-parallel dh_autoreconf -O--no-parallel dh_auto_configure -O--no-parallel debian/rules execute_after_dh_auto_configure-arch make[1]: Entering directory '/build/cbflib-0.9.7+dfsg1' /usr/bin/make 'C++:=$(CXX)' /build/cbflib-0.9.7+dfsg1/pycbf/setup.py make[2]: Entering directory '/build/cbflib-0.9.7+dfsg1' (m4 -P -Dregexlib= -Dregexlib2= \ -Ddefine_macros="('SWIG_PYTHON_STRICT_BYTE_CHAR', None)" \ -Dextra_compile_args=-I/usr/include/hdf5/serial \ -Dregexlibdir=/build/cbflib-0.9.7+dfsg1/lib -Dhdf5_prefix= \ /build/cbflib-0.9.7+dfsg1/m4/setup_py.m4 > /build/cbflib-0.9.7+dfsg1/pycbf/setup.py) make[2]: Leaving directory '/build/cbflib-0.9.7+dfsg1' dh_auto_configure --buildsystem=pybuild --sourcedirectory=pycbf I: pybuild base:240: python3.11 setup.py config /build/cbflib-0.9.7+dfsg1/pycbf/setup.py:7: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup, Extension running config make[1]: Leaving directory '/build/cbflib-0.9.7+dfsg1' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/cbflib-0.9.7+dfsg1' # build the C/C++ library dh_auto_build -- 'C++:=$(CXX)' shared all make -j1 "INSTALL=install --strip-program=true" C\+\+:=\$\(CXX\) shared all make[2]: Entering directory '/build/cbflib-0.9.7+dfsg1' rm -f /build/cbflib-0.9.7+dfsg1/solib/libcbf.so rm -f *.o mkdir -p /build/cbflib-0.9.7+dfsg1/solib gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.7+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -DCBF_REGEXLIB_REGEX -fPIC -I/build/cbflib-0.9.7+dfsg1/include -I/build/cbflib-0.9.7+dfsg1/src -I/usr/include/hdf5/serial -c /build/cbflib-0.9.7+dfsg1/src/cbf.c /build/cbflib-0.9.7+dfsg1/src/cbf_airy_disk.c /build/cbflib-0.9.7+dfsg1/src/cbf_alloc.c /build/cbflib-0.9.7+dfsg1/src/cbf_ascii.c /build/cbflib-0.9.7+dfsg1/src/cbf_binary.c /build/cbflib-0.9.7+dfsg1/src/cbf_byte_offset.c /build/cbflib-0.9.7+dfsg1/src/cbf_canonical.c /build/cbflib-0.9.7+dfsg1/src/cbf_codes.c /build/cbflib-0.9.7+dfsg1/src/cbf_compress.c /build/cbflib-0.9.7+dfsg1/src/cbf_context.c /build/cbflib-0.9.7+dfsg1/src/cbf_copy.c /build/cbflib-0.9.7+dfsg1/src/cbf_file.c /build/cbflib-0.9.7+dfsg1/src/cbf_getopt.c /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5_filter.c /build/cbflib-0.9.7+dfsg1/src/cbf_lex.c /build/cbflib-0.9.7+dfsg1/src/cbf_minicbf_header.c /build/cbflib-0.9.7+dfsg1/src/cbf_nibble_offset.c /build/cbflib-0.9.7+dfsg1/src/cbf_packed.c /build/cbflib-0.9.7+dfsg1/src/cbf_predictor.c /build/cbflib-0.9.7+dfsg1/src/cbf_read_binary.c /build/cbflib-0.9.7+dfsg1/src/cbf_read_mime.c /build/cbflib-0.9.7+dfsg1/src/cbf_simple.c /build/cbflib-0.9.7+dfsg1/src/cbf_string.c /build/cbflib-0.9.7+dfsg1/src/cbf_stx.c /build/cbflib-0.9.7+dfsg1/src/cbf_tree.c /build/cbflib-0.9.7+dfsg1/src/cbf_uncompressed.c /build/cbflib-0.9.7+dfsg1/src/cbf_write.c /build/cbflib-0.9.7+dfsg1/src/cbf_write_binary.c /build/cbflib-0.9.7+dfsg1/src/cbf_ws.c /build/cbflib-0.9.7+dfsg1/src/cbff.c /build/cbflib-0.9.7+dfsg1/src/md5c.c /build/cbflib-0.9.7+dfsg1/src/img.c /build/cbflib-0.9.7+dfsg1/src/fgetln.c /build/cbflib-0.9.7+dfsg1/src/cbf.c: In function 'cbf_select_saveframe': /build/cbflib-0.9.7+dfsg1/src/cbf.c:2498:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2498 | if (!handle) | ^~ In file included from /build/cbflib-0.9.7+dfsg1/src/cbf.c:256: /build/cbflib-0.9.7+dfsg1/include/cbf.h:895:24: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 895 | #define cbf_failnez(f) { int err; err = (f); if (err) return err; } | ^ /build/cbflib-0.9.7+dfsg1/src/cbf.c:2505:5: note: in expansion of macro 'cbf_failnez' 2505 | cbf_failnez (cbf_find_parent (&node, handle->node, CBF_DATABLOCK)) | ^~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_nx2cbf__entry_op': /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:21473:31: warning: unused variable 'nxpdb_found' [-Wunused-variable] 21473 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_nx2cbf': /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:22527:25: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 22527 | if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; | ^~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:22527:85: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 22527 | if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; | ^~~~~~~~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:22528:25: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 22528 | if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; | ^~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:22528:95: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 22528 | if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; | ^~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:22529:25: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 22529 | if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; | ^~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:22529:81: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 22529 | if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; | ^~~~~~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c: In function 'cbf_h5ds_store_as_column': /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:28703:16: warning: unused variable 'byte_order' [-Wunused-variable] 28703 | char * byte_order; | ^~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:28681:14: warning: unused variable 'buffer' [-Wunused-variable] 28681 | char buffer[25]; | ^~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c: In function 'cbf_object_visit': /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:30485:36: warning: unused variable 'atnexus' [-Wunused-variable] 30485 | int save_innexus, innexus, atnexus; /* within or at NXentry */ | ^~~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c: In function 'cbf_read_h5file_group': /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:31721:13: warning: unused variable 'errorcode' [-Wunused-variable] 31721 | int errorcode = 0; | ^~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:31717:19: warning: unused variable 'node' [-Wunused-variable] 31717 | cbf_node *node; | ^~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c: At top level: /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:9141:16: warning: 'cbf_require_nxdetectors' defined but not used [-Wunused-function] 9141 | static int cbf_require_nxdetectors(const cbf_handle handle, | ^~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c: In function 'cbf_create_h5handle2': /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:17990:28: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 17990 | svnrev[ii] = '\0'; | ~~~~~~~~~~~^~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:17956:14: note: at offset -1 into destination object 'svnrev' of size 12 17956 | char svnrev[] = CBF_SVN_REVISION_STRING; | ^~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:18018:9: warning: '__builtin___strncat_chk' output may be truncated copying 10 bytes from a string of length 11 [-Wstringop-truncation] 18018 | strncat(buffer,svnrev+irev,10); | ^ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:18020:9: warning: '__builtin___strncat_chk' output may be truncated copying 50 bytes from a string of length 53 [-Wstringop-truncation] 18020 | strncat(buffer,svndate+idate,50); | ^ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c: In function 'cbf_create_h5handle2u': /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:18072:28: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 18072 | svnrev[ii] = '\0'; | ~~~~~~~~~~~^~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:18038:14: note: at offset -1 into destination object 'svnrev' of size 12 18038 | char svnrev[] = CBF_SVN_REVISION_STRING; | ^~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:18100:9: warning: '__builtin___strncat_chk' output may be truncated copying 10 bytes from a string of length 11 [-Wstringop-truncation] 18100 | strncat(buffer,svnrev+irev,10); | ^ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:18102:9: warning: '__builtin___strncat_chk' output may be truncated copying 50 bytes from a string of length 53 [-Wstringop-truncation] 18102 | strncat(buffer,svndate+idate,50); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from /build/cbflib-0.9.7+dfsg1/include/cbf.h:253, from /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:258: In function 'sprintf', inlined from 'cbf_H5Dread_element_as_string' at /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:3440:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: warning: null destination pointer [-Wformat-overflow=] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_h5category': /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:16861:30: warning: 'row' may be used uninitialized [-Wmaybe-uninitialized] 16861 | cbf_failnez (cbf_get_columnrow (&text, category->child [column], row)); | ^~~~~~~~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:15949:30: note: 'row' was declared here 15949 | unsigned int column, row; | ^~~ /build/cbflib-0.9.7+dfsg1/src/cbf_minicbf_header.c: In function 'cbf_append_string.part.0': /build/cbflib-0.9.7+dfsg1/src/cbf_minicbf_header.c:325:9: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 325 | strncpy(*dst,src,srclen); | ^ /build/cbflib-0.9.7+dfsg1/src/cbf_minicbf_header.c:302:18: note: length computed here 302 | srclen = strlen(src); | ^~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_minicbf_header.c: In function 'cbf_set_minicbf_header': /build/cbflib-0.9.7+dfsg1/src/cbf_minicbf_header.c:325:9: warning: '__builtin_strncpy' output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] 325 | strncpy(*dst,src,srclen); | ^ /build/cbflib-0.9.7+dfsg1/src/cbf_nibble_offset.c: In function 'cbf_compress_nibble_offset': /build/cbflib-0.9.7+dfsg1/src/cbf_nibble_offset.c:936:21: warning: 'dmode' may be used uninitialized [-Wmaybe-uninitialized] 936 | curmode = dmode[inrun]; | ~~~~~~~~^~~~~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_nibble_offset.c:579:13: note: 'dmode' declared here 579 | int dmode[CBF_NIBBLE_RUN],maxmode,minmode,newmode,nextmaxmode,tempmode; | ^~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_stx.c:828:26: warning: 'yytname' defined but not used [-Wunused-const-variable=] 828 | static const char *const yytname[] = | ^~~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_ws.c: In function 'cbf_find_bracketstring': /build/cbflib-0.9.7+dfsg1/src/cbf_ws.c:1075:26: warning: array subscript -1 is outside array bounds of 'int[2305843009213693951]' [-Warray-bounds] 1075 | tokentype[depth-1]= *stringtype; | ~~~~~~~~~^~~~~~~~~ gcc -o /build/cbflib-0.9.7+dfsg1/solib/libcbf.so *.o -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname -Wl,libcbf.so.1 -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 rm -f *.o (cd /build/cbflib-0.9.7+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_exit_binary.m4) > /build/cbflib-0.9.7+dfsg1/src/fcb_exit_binary.f90 (cd /build/cbflib-0.9.7+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_next_binary.m4) > /build/cbflib-0.9.7+dfsg1/src/fcb_next_binary.f90 (cd /build/cbflib-0.9.7+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_open_cifin.m4) > /build/cbflib-0.9.7+dfsg1/src/fcb_open_cifin.f90 (cd /build/cbflib-0.9.7+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_packed.m4) > /build/cbflib-0.9.7+dfsg1/src/fcb_packed.f90 (cd /build/cbflib-0.9.7+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_read_bits.m4) > /build/cbflib-0.9.7+dfsg1/src/fcb_read_bits.f90 (cd /build/cbflib-0.9.7+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_read_image.m4) > /build/cbflib-0.9.7+dfsg1/src/fcb_read_image.f90 (cd /build/cbflib-0.9.7+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_read_xds_i2.m4) > /build/cbflib-0.9.7+dfsg1/src/fcb_read_xds_i2.f90 chmod a+x .symlinks chmod a+x .undosymlinks chmod a+x doc/.symlinks chmod a+x doc/.undosymlinks ./.symlinks --use_ln touch symlinksdone rm -f /build/cbflib-0.9.7+dfsg1/lib/libcbf.a rm -f *.o mkdir -p /build/cbflib-0.9.7+dfsg1/lib gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.7+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -DCBF_REGEXLIB_REGEX \ -DCBF_FILTER_STATIC -I/build/cbflib-0.9.7+dfsg1/include -I/build/cbflib-0.9.7+dfsg1/src -I/usr/include/hdf5/serial -c /build/cbflib-0.9.7+dfsg1/src/cbf.c /build/cbflib-0.9.7+dfsg1/src/cbf_airy_disk.c /build/cbflib-0.9.7+dfsg1/src/cbf_alloc.c /build/cbflib-0.9.7+dfsg1/src/cbf_ascii.c /build/cbflib-0.9.7+dfsg1/src/cbf_binary.c /build/cbflib-0.9.7+dfsg1/src/cbf_byte_offset.c /build/cbflib-0.9.7+dfsg1/src/cbf_canonical.c /build/cbflib-0.9.7+dfsg1/src/cbf_codes.c /build/cbflib-0.9.7+dfsg1/src/cbf_compress.c /build/cbflib-0.9.7+dfsg1/src/cbf_context.c /build/cbflib-0.9.7+dfsg1/src/cbf_copy.c /build/cbflib-0.9.7+dfsg1/src/cbf_file.c /build/cbflib-0.9.7+dfsg1/src/cbf_getopt.c /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5_filter.c /build/cbflib-0.9.7+dfsg1/src/cbf_lex.c /build/cbflib-0.9.7+dfsg1/src/cbf_minicbf_header.c /build/cbflib-0.9.7+dfsg1/src/cbf_nibble_offset.c /build/cbflib-0.9.7+dfsg1/src/cbf_packed.c /build/cbflib-0.9.7+dfsg1/src/cbf_predictor.c /build/cbflib-0.9.7+dfsg1/src/cbf_read_binary.c /build/cbflib-0.9.7+dfsg1/src/cbf_read_mime.c /build/cbflib-0.9.7+dfsg1/src/cbf_simple.c /build/cbflib-0.9.7+dfsg1/src/cbf_string.c /build/cbflib-0.9.7+dfsg1/src/cbf_stx.c /build/cbflib-0.9.7+dfsg1/src/cbf_tree.c /build/cbflib-0.9.7+dfsg1/src/cbf_uncompressed.c /build/cbflib-0.9.7+dfsg1/src/cbf_write.c /build/cbflib-0.9.7+dfsg1/src/cbf_write_binary.c /build/cbflib-0.9.7+dfsg1/src/cbf_ws.c /build/cbflib-0.9.7+dfsg1/src/cbff.c /build/cbflib-0.9.7+dfsg1/src/md5c.c /build/cbflib-0.9.7+dfsg1/src/img.c /build/cbflib-0.9.7+dfsg1/src/fgetln.c /build/cbflib-0.9.7+dfsg1/src/cbf.c: In function 'cbf_select_saveframe': /build/cbflib-0.9.7+dfsg1/src/cbf.c:2498:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2498 | if (!handle) | ^~ In file included from /build/cbflib-0.9.7+dfsg1/src/cbf.c:256: /build/cbflib-0.9.7+dfsg1/include/cbf.h:895:24: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 895 | #define cbf_failnez(f) { int err; err = (f); if (err) return err; } | ^ /build/cbflib-0.9.7+dfsg1/src/cbf.c:2505:5: note: in expansion of macro 'cbf_failnez' 2505 | cbf_failnez (cbf_find_parent (&node, handle->node, CBF_DATABLOCK)) | ^~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_codes.c: In function 'cbf_frombase32k': /build/cbflib-0.9.7+dfsg1/src/cbf_codes.c:1357:16: warning: '*enc' may be used uninitialized [-Wmaybe-uninitialized] 1357 | if((enc[0] == '\xFF' && enc[1] == '\xFE' && cbf_isBigEndian() == 0) || (enc[0] == '\xFE' && enc[1] == '\xFF' && cbf_isBigEndian() !=0)) | ~~~^~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_nx2cbf__entry_op': /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:21473:31: warning: unused variable 'nxpdb_found' [-Wunused-variable] 21473 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_nx2cbf': /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:22527:25: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 22527 | if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; | ^~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:22527:85: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 22527 | if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; | ^~~~~~~~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:22528:25: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 22528 | if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; | ^~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:22528:95: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 22528 | if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; | ^~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:22529:25: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 22529 | if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; | ^~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:22529:81: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 22529 | if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; | ^~~~~~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c: In function 'cbf_h5ds_store_as_column': /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:28703:16: warning: unused variable 'byte_order' [-Wunused-variable] 28703 | char * byte_order; | ^~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:28681:14: warning: unused variable 'buffer' [-Wunused-variable] 28681 | char buffer[25]; | ^~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c: In function 'cbf_object_visit': /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:30485:36: warning: unused variable 'atnexus' [-Wunused-variable] 30485 | int save_innexus, innexus, atnexus; /* within or at NXentry */ | ^~~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c: In function 'cbf_read_h5file_group': /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:31721:13: warning: unused variable 'errorcode' [-Wunused-variable] 31721 | int errorcode = 0; | ^~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:31717:19: warning: unused variable 'node' [-Wunused-variable] 31717 | cbf_node *node; | ^~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c: At top level: /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:9141:16: warning: 'cbf_require_nxdetectors' defined but not used [-Wunused-function] 9141 | static int cbf_require_nxdetectors(const cbf_handle handle, | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:906, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from /build/cbflib-0.9.7+dfsg1/include/cbf.h:253, from /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:258: In function 'sprintf', inlined from 'cbf_H5Dread_element_as_string' at /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:3440:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: warning: argument 1 null where non-null expected [-Wnonnull] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: in a call to built-in function '__builtin___sprintf_chk' /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: warning: null destination pointer [-Wformat-overflow=] /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c: In function 'cbf_add_h5text_dataset_slab': /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:13579:29: warning: 'anondataset' may be used uninitialized [-Wmaybe-uninitialized] 13579 | cbf_h5reportneg(H5Olink(anondataset,hid,datasetname,H5P_DEFAULT,H5P_DEFAULT), CBF_FORMAT, errorcode); | ^~~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:13399:15: note: 'anondataset' was declared here 13399 | hid_t anondataset; | ^~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c: In function 'cbf_require_h5text_dataset_slab': /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:13190:47: warning: 'anondataset' may be used uninitialized [-Wmaybe-uninitialized] 13190 | if (anondataset >= 0) H5Dclose(anondataset); | ^~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:13050:15: note: 'anondataset' was declared here 13050 | hid_t anondataset; | ^~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_h5category': /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:16861:30: warning: 'row' may be used uninitialized [-Wmaybe-uninitialized] 16861 | cbf_failnez (cbf_get_columnrow (&text, category->child [column], row)); | ^~~~~~~~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:15949:30: note: 'row' was declared here 15949 | unsigned int column, row; | ^~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c: In function 'cbf_create_h5handle2': /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:17990:28: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 17990 | svnrev[ii] = '\0'; | ~~~~~~~~~~~^~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:17956:14: note: at offset -1 into destination object 'svnrev' of size 12 17956 | char svnrev[] = CBF_SVN_REVISION_STRING; | ^~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:18018:9: warning: '__builtin___strncat_chk' output may be truncated copying 10 bytes from a string of length 11 [-Wstringop-truncation] 18018 | strncat(buffer,svnrev+irev,10); | ^ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:18020:9: warning: '__builtin___strncat_chk' output may be truncated copying 50 bytes from a string of length 53 [-Wstringop-truncation] 18020 | strncat(buffer,svndate+idate,50); | ^ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c: In function 'cbf_create_h5handle2u': /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:18072:28: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 18072 | svnrev[ii] = '\0'; | ~~~~~~~~~~~^~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:18038:14: note: at offset -1 into destination object 'svnrev' of size 12 18038 | char svnrev[] = CBF_SVN_REVISION_STRING; | ^~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:18100:9: warning: '__builtin___strncat_chk' output may be truncated copying 10 bytes from a string of length 11 [-Wstringop-truncation] 18100 | strncat(buffer,svnrev+irev,10); | ^ /build/cbflib-0.9.7+dfsg1/src/cbf_hdf5.c:18102:9: warning: '__builtin___strncat_chk' output may be truncated copying 50 bytes from a string of length 53 [-Wstringop-truncation] 18102 | strncat(buffer,svndate+idate,50); | ^ /build/cbflib-0.9.7+dfsg1/src/cbf_minicbf_header.c: In function 'cbf_append_string.part.0': /build/cbflib-0.9.7+dfsg1/src/cbf_minicbf_header.c:325:9: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 325 | strncpy(*dst,src,srclen); | ^ /build/cbflib-0.9.7+dfsg1/src/cbf_minicbf_header.c:302:18: note: length computed here 302 | srclen = strlen(src); | ^~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_minicbf_header.c: In function 'cbf_set_minicbf_header': /build/cbflib-0.9.7+dfsg1/src/cbf_minicbf_header.c:325:9: warning: '__builtin_strncpy' output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] 325 | strncpy(*dst,src,srclen); | ^ /build/cbflib-0.9.7+dfsg1/src/cbf_nibble_offset.c: In function 'cbf_compress_nibble_offset': /build/cbflib-0.9.7+dfsg1/src/cbf_nibble_offset.c:936:21: warning: 'dmode' may be used uninitialized [-Wmaybe-uninitialized] 936 | curmode = dmode[inrun]; | ~~~~~~~~^~~~~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_nibble_offset.c:579:13: note: 'dmode' declared here 579 | int dmode[CBF_NIBBLE_RUN],maxmode,minmode,newmode,nextmaxmode,tempmode; | ^~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_stx.c:828:26: warning: 'yytname' defined but not used [-Wunused-const-variable=] 828 | static const char *const yytname[] = | ^~~~~~~ /build/cbflib-0.9.7+dfsg1/src/cbf_ws.c: In function 'cbf_find_bracketstring': /build/cbflib-0.9.7+dfsg1/src/cbf_ws.c:1075:26: warning: array subscript -1 is outside array bounds of 'int[2305843009213693951]' [-Warray-bounds] 1075 | tokentype[depth-1]= *stringtype; | ~~~~~~~~~^~~~~~~~~ In function 'img_memcpy', inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1793:7, inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1770:5, inlined from 'img_free_handle' at /build/cbflib-0.9.7+dfsg1/src/img.c:1853:3: /build/cbflib-0.9.7+dfsg1/src/img.c:44:35: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 44 | for (ii=0; iitag = (img_tag *) malloc (tags * sizeof (img_tag)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'img_memcpy', inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1793:7, inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1770:5, inlined from 'img_free_handle' at /build/cbflib-0.9.7+dfsg1/src/img.c:1853:3: /build/cbflib-0.9.7+dfsg1/src/img.c:44:35: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 44 | for (ii=0; iitag = (img_tag *) malloc (tags * sizeof (img_tag)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/img.c:1782:28: note: at offset 16 into destination object of size 0 allocated by 'malloc' In function 'img_memcpy', inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1793:7, inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1770:5, inlined from 'img_free_handle' at /build/cbflib-0.9.7+dfsg1/src/img.c:1853:3: /build/cbflib-0.9.7+dfsg1/src/img.c:44:35: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 44 | for (ii=0; iitag = (img_tag *) malloc (tags * sizeof (img_tag)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/img.c:1782:28: note: at offset 16 into destination object of size 0 allocated by 'malloc' In function 'img_memcpy', inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1793:7, inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1770:5, inlined from 'img_free_handle' at /build/cbflib-0.9.7+dfsg1/src/img.c:1853:3: /build/cbflib-0.9.7+dfsg1/src/img.c:44:35: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 44 | for (ii=0; iitag = (img_tag *) malloc (tags * sizeof (img_tag)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/img.c:1782:28: note: at offset 16 into destination object of size 0 allocated by 'malloc' In function 'img_memcpy', inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1793:7, inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1770:5, inlined from 'img_free_handle' at /build/cbflib-0.9.7+dfsg1/src/img.c:1853:3: /build/cbflib-0.9.7+dfsg1/src/img.c:44:35: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 44 | for (ii=0; iitag = (img_tag *) malloc (tags * sizeof (img_tag)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/img.c:1782:28: note: at offset 16 into destination object of size 0 allocated by 'malloc' In function 'img_memcpy', inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1793:7, inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1770:5, inlined from 'img_free_handle' at /build/cbflib-0.9.7+dfsg1/src/img.c:1853:3: /build/cbflib-0.9.7+dfsg1/src/img.c:44:35: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 44 | for (ii=0; iitag = (img_tag *) malloc (tags * sizeof (img_tag)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/img.c:1782:28: note: at offset 16 into destination object of size 0 allocated by 'malloc' In function 'img_memcpy', inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1793:7, inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1770:5, inlined from 'img_free_handle' at /build/cbflib-0.9.7+dfsg1/src/img.c:1853:3: /build/cbflib-0.9.7+dfsg1/src/img.c:44:35: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 44 | for (ii=0; iitag = (img_tag *) malloc (tags * sizeof (img_tag)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/img.c:1782:28: note: at offset 16 into destination object of size 0 allocated by 'malloc' In function 'img_memcpy', inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1793:7, inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1770:5, inlined from 'img_free_handle' at /build/cbflib-0.9.7+dfsg1/src/img.c:1853:3: /build/cbflib-0.9.7+dfsg1/src/img.c:44:35: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 44 | for (ii=0; iitag = (img_tag *) malloc (tags * sizeof (img_tag)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/img.c:1782:28: note: at offset 16 into destination object of size 0 allocated by 'malloc' /usr/bin/ar cr /build/cbflib-0.9.7+dfsg1/lib/libcbf.a *.o /usr/bin/ranlib /build/cbflib-0.9.7+dfsg1/lib/libcbf.a rm -f *.o mkdir -p /build/cbflib-0.9.7+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.7+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I/build/cbflib-0.9.7+dfsg1/include -I/build/cbflib-0.9.7+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.7+dfsg1/examples/adscimg2cbf.c /build/cbflib-0.9.7+dfsg1/examples/adscimg2cbf_sub.c -L/build/cbflib-0.9.7+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.7+dfsg1/bin/adscimg2cbf In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /build/cbflib-0.9.7+dfsg1/examples/adscimg2cbf.c:1: /usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from /build/cbflib-0.9.7+dfsg1/include/cbf.h:253, from /build/cbflib-0.9.7+dfsg1/examples/adscimg2cbf_sub.c:177: /usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /build/cbflib-0.9.7+dfsg1/examples/adscimg2cbf_sub.c: In function 'gethd.constprop': /build/cbflib-0.9.7+dfsg1/examples/adscimg2cbf_sub.c:263:3: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 263 | strncpy (newfield+1, field, l); | ^ /build/cbflib-0.9.7+dfsg1/examples/adscimg2cbf_sub.c:260:7: note: length computed here 260 | l = strlen (field); | ^~~~~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/examples/adscimg2cbf_sub.c: In function 'adscimg2cbf_sub2': /build/cbflib-0.9.7+dfsg1/examples/adscimg2cbf_sub.c:591:29: warning: '; ' directive writing 2 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 591 | sprintf(temp, "%s=%s;\n", s, s1); | ^~~ In file included from /usr/include/stdio.h:906, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26: In function 'sprintf', inlined from 'adscimg2cbf_sub2' at /build/cbflib-0.9.7+dfsg1/examples/adscimg2cbf_sub.c:591:9: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output 4 or more bytes (assuming 1027) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/examples/adscimg2cbf_sub.c: In function 'adscimg2cbf_sub2': /build/cbflib-0.9.7+dfsg1/examples/adscimg2cbf_sub.c:1842:53: warning: 'smooth_data_as_int' may be used uninitialized [-Wmaybe-uninitialized] 1842 | if (kj > 0 && smooth_data_as_int[ki*(1+fasthigh-fastlow+fastpadlow+fastpadhigh)/(bin+1)+kj-1] | ^ /build/cbflib-0.9.7+dfsg1/examples/adscimg2cbf_sub.c:526:14: note: 'smooth_data_as_int' was declared here 526 | int *smooth_data_as_int; | ^~~~~~~~~~~~~~~~~~ mkdir -p /build/cbflib-0.9.7+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.7+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.7+dfsg1/include -I/build/cbflib-0.9.7+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.7+dfsg1/examples/arvai_test.c -L/build/cbflib-0.9.7+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.7+dfsg1/bin/arvai_test /build/cbflib-0.9.7+dfsg1/examples/arvai_test.c: In function 'main': /build/cbflib-0.9.7+dfsg1/examples/arvai_test.c:62:12: warning: pointer 'data_buffer' used after 'free' [-Wuse-after-free] 62 | ierr = cbf_read_buffered_file (cbf, NULL, MSG_DIGESTNOW, data_buffer, data_buffer_len); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/examples/arvai_test.c:59:9: note: call to 'free' here 59 | free((void *)data_buffer); | ^~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p /build/cbflib-0.9.7+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.7+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I/build/cbflib-0.9.7+dfsg1/include -I/build/cbflib-0.9.7+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.7+dfsg1/examples/cbf2adscimg.c /build/cbflib-0.9.7+dfsg1/examples/cbf2adscimg_sub.c -L/build/cbflib-0.9.7+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.7+dfsg1/bin/cbf2adscimg In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /build/cbflib-0.9.7+dfsg1/examples/cbf2adscimg.c:1: /usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /build/cbflib-0.9.7+dfsg1/examples/cbf2adscimg.c: In function 'gethd': /build/cbflib-0.9.7+dfsg1/examples/cbf2adscimg.c:21:3: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 21 | strncpy (newfield+1, field, l); | ^ /build/cbflib-0.9.7+dfsg1/examples/cbf2adscimg.c:18:7: note: length computed here 18 | l = strlen (field); | ^~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from /build/cbflib-0.9.7+dfsg1/include/cbf.h:253, from /build/cbflib-0.9.7+dfsg1/examples/cbf2adscimg_sub.c:126: /usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /build/cbflib-0.9.7+dfsg1/examples/cbf2adscimg_sub.c: In function 'padhd': /build/cbflib-0.9.7+dfsg1/examples/cbf2adscimg_sub.c:217:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 217 | for ( hp=header; *hp != '}'; hp++); hp++; | ^~~ /build/cbflib-0.9.7+dfsg1/examples/cbf2adscimg_sub.c:217:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 217 | for ( hp=header; *hp != '}'; hp++); hp++; | ^~ mkdir -p /build/cbflib-0.9.7+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.7+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.7+dfsg1/include -I/build/cbflib-0.9.7+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.7+dfsg1/examples/cbf2nexus.c -L/build/cbflib-0.9.7+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 \ -o /build/cbflib-0.9.7+dfsg1/bin/cbf2nexus mkdir -p /build/cbflib-0.9.7+dfsg1/bin g -O2 -ffile-prefix-map=/build/cbflib-0.9.7+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.7+dfsg1/include -I/build/cbflib-0.9.7+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.7+dfsg1/examples/cif2c.c -L/build/cbflib-0.9.7+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.7+dfsg1/bin/cif2c bash: line 1: g: command not found make[2]: [Makefile:2082: /build/cbflib-0.9.7+dfsg1/bin/cif2c] Error 127 (ignored) mkdir -p /build/cbflib-0.9.7+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.7+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.7+dfsg1/include -I/build/cbflib-0.9.7+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.7+dfsg1/examples/cif2cbf.c -L/build/cbflib-0.9.7+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.7+dfsg1/bin/cif2cbf /build/cbflib-0.9.7+dfsg1/examples/cif2cbf.c: In function 'main': /build/cbflib-0.9.7+dfsg1/examples/cif2cbf.c:2015:25: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-truncation] 2015 | strncpy(ndatablock_name+ndbsz-dbsz,db+idb,dbsz); | ^ /build/cbflib-0.9.7+dfsg1/examples/cif2cbf.c:2012:28: note: length computed here 2012 | dbsz = strlen(datablock_name+idb); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p /build/cbflib-0.9.7+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.7+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I/build/cbflib-0.9.7+dfsg1/include -I/build/cbflib-0.9.7+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.7+dfsg1/examples/cbf_standardize_numbers.c /build/cbflib-0.9.7+dfsg1/src/fgetln.c -lm -o /build/cbflib-0.9.7+dfsg1/bin/cbf_standardize_numbers In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from /build/cbflib-0.9.7+dfsg1/include/cbf.h:253, from /build/cbflib-0.9.7+dfsg1/examples/cbf_standardize_numbers.c:9: /usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /build/cbflib-0.9.7+dfsg1/examples/cbf_standardize_numbers.c: In function 'main': /build/cbflib-0.9.7+dfsg1/examples/cbf_standardize_numbers.c:61:24: warning: '%d' directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=] 61 | sprintf(format,"%%.%dg ",(digits>0)?digits+1:0); | ^~ /build/cbflib-0.9.7+dfsg1/examples/cbf_standardize_numbers.c:61:20: note: directive argument in the range [0, 2147483647] 61 | sprintf(format,"%%.%dg ",(digits>0)?digits+1:0); | ^~~~~~~~~ In file included from /usr/include/stdio.h:906, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26: In function 'sprintf', inlined from 'main' at /build/cbflib-0.9.7+dfsg1/examples/cbf_standardize_numbers.c:61:5: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 6 and 15 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /build/cbflib-0.9.7+dfsg1/src/fgetln.c:30: /usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mkdir -p /build/cbflib-0.9.7+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.7+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.7+dfsg1/include -I/build/cbflib-0.9.7+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.7+dfsg1/examples/convert_image.c /build/cbflib-0.9.7+dfsg1/src/img.c -L/build/cbflib-0.9.7+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.7+dfsg1/bin/convert_image /build/cbflib-0.9.7+dfsg1/examples/convert_image.c: In function 'main': /build/cbflib-0.9.7+dfsg1/examples/convert_image.c:533:7: warning: variable 'transpose' set but not used [-Wunused-but-set-variable] 533 | int transpose; | ^~~~~~~~~ In function 'img_memcpy', inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1793:7, inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1770:5, inlined from 'img_free_handle' at /build/cbflib-0.9.7+dfsg1/src/img.c:1853:3: /build/cbflib-0.9.7+dfsg1/src/img.c:44:35: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=] 44 | for (ii=0; iitag = (img_tag *) malloc (tags * sizeof (img_tag)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'img_memcpy', inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1793:7, inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1770:5, inlined from 'img_free_handle' at /build/cbflib-0.9.7+dfsg1/src/img.c:1853:3: /build/cbflib-0.9.7+dfsg1/src/img.c:44:35: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 44 | for (ii=0; iitag = (img_tag *) malloc (tags * sizeof (img_tag)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/img.c:1782:28: note: at offset 16 into destination object of size 0 allocated by 'malloc' In function 'img_memcpy', inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1793:7, inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1770:5, inlined from 'img_free_handle' at /build/cbflib-0.9.7+dfsg1/src/img.c:1853:3: /build/cbflib-0.9.7+dfsg1/src/img.c:44:35: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 44 | for (ii=0; iitag = (img_tag *) malloc (tags * sizeof (img_tag)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/img.c:1782:28: note: at offset 16 into destination object of size 0 allocated by 'malloc' In function 'img_memcpy', inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1793:7, inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1770:5, inlined from 'img_free_handle' at /build/cbflib-0.9.7+dfsg1/src/img.c:1853:3: /build/cbflib-0.9.7+dfsg1/src/img.c:44:35: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 44 | for (ii=0; iitag = (img_tag *) malloc (tags * sizeof (img_tag)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/img.c:1782:28: note: at offset 16 into destination object of size 0 allocated by 'malloc' In function 'img_memcpy', inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1793:7, inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1770:5, inlined from 'img_free_handle' at /build/cbflib-0.9.7+dfsg1/src/img.c:1853:3: /build/cbflib-0.9.7+dfsg1/src/img.c:44:35: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 44 | for (ii=0; iitag = (img_tag *) malloc (tags * sizeof (img_tag)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/img.c:1782:28: note: at offset 16 into destination object of size 0 allocated by 'malloc' In function 'img_memcpy', inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1793:7, inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1770:5, inlined from 'img_free_handle' at /build/cbflib-0.9.7+dfsg1/src/img.c:1853:3: /build/cbflib-0.9.7+dfsg1/src/img.c:44:35: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 44 | for (ii=0; iitag = (img_tag *) malloc (tags * sizeof (img_tag)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/img.c:1782:28: note: at offset 16 into destination object of size 0 allocated by 'malloc' In function 'img_memcpy', inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1793:7, inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1770:5, inlined from 'img_free_handle' at /build/cbflib-0.9.7+dfsg1/src/img.c:1853:3: /build/cbflib-0.9.7+dfsg1/src/img.c:44:35: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 44 | for (ii=0; iitag = (img_tag *) malloc (tags * sizeof (img_tag)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/img.c:1782:28: note: at offset 16 into destination object of size 0 allocated by 'malloc' In function 'img_memcpy', inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1793:7, inlined from 'img_set_tags' at /build/cbflib-0.9.7+dfsg1/src/img.c:1770:5, inlined from 'img_free_handle' at /build/cbflib-0.9.7+dfsg1/src/img.c:1853:3: /build/cbflib-0.9.7+dfsg1/src/img.c:44:35: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 44 | for (ii=0; iitag = (img_tag *) malloc (tags * sizeof (img_tag)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.7+dfsg1/src/img.c:1782:28: note: at offset 16 into destination object of size 0 allocated by 'malloc' /usr/bin/ld: /tmp/ccmcNDCV.o: in function `main': ././examples/convert_image.c:672: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' mkdir -p /build/cbflib-0.9.7+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.7+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.7+dfsg1/include -I/build/cbflib-0.9.7+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.7+dfsg1/examples/convert_minicbf.c -L/build/cbflib-0.9.7+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.7+dfsg1/bin/convert_minicbf chmod 755 /build/cbflib-0.9.7+dfsg1/examples/batch_convert_minicbf.sh mkdir -p /build/cbflib-0.9.7+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.7+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.7+dfsg1/include -I/build/cbflib-0.9.7+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.7+dfsg1/examples/img2cif.c -L/build/cbflib-0.9.7+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.7+dfsg1/bin/img2cif mkdir -p /build/cbflib-0.9.7+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.7+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.7+dfsg1/include -I/build/cbflib-0.9.7+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.7+dfsg1/examples/makecbf.c -L/build/cbflib-0.9.7+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.7+dfsg1/bin/makecbf mkdir -p /build/cbflib-0.9.7+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.7+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.7+dfsg1/include -I/build/cbflib-0.9.7+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.7+dfsg1/examples/minicbf2nexus.c -L/build/cbflib-0.9.7+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.7+dfsg1/bin/minicbf2nexus mkdir -p /build/cbflib-0.9.7+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.7+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.7+dfsg1/include -I/build/cbflib-0.9.7+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.7+dfsg1/examples/nexus2cbf.c -L/build/cbflib-0.9.7+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.7+dfsg1/bin/nexus2cbf mkdir -p /build/cbflib-0.9.7+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.7+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.7+dfsg1/include -I/build/cbflib-0.9.7+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.7+dfsg1/examples/roi_peaksearch.c /build/cbflib-0.9.7+dfsg1/examples/dps_peaksearch.c -L/build/cbflib-0.9.7+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.7+dfsg1/bin/roi_peaksearch mkdir -p /build/cbflib-0.9.7+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.7+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.7+dfsg1/include -I/build/cbflib-0.9.7+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.7+dfsg1/examples/sequence_match.c -L/build/cbflib-0.9.7+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.7+dfsg1/bin/sequence_match mkdir -p /build/cbflib-0.9.7+dfsg1/bin g -O2 -ffile-prefix-map=/build/cbflib-0.9.7+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.7+dfsg1/include -I/build/cbflib-0.9.7+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.7+dfsg1/examples/testcell.C -L/build/cbflib-0.9.7+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.7+dfsg1/bin/testcell bash: line 1: g: command not found make[2]: [Makefile:2073: /build/cbflib-0.9.7+dfsg1/bin/testcell] Error 127 (ignored) mkdir -p /build/cbflib-0.9.7+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.7+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.7+dfsg1/include -I/build/cbflib-0.9.7+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.7+dfsg1/examples/testalloc.c -L/build/cbflib-0.9.7+dfsg1/lib /build/cbflib-0.9.7+dfsg1/lib/libcbf.a \ -lm -o /build/cbflib-0.9.7+dfsg1/bin/testalloc.tmp mv /build/cbflib-0.9.7+dfsg1/bin/testalloc.tmp /build/cbflib-0.9.7+dfsg1/bin/testalloc mkdir -p /build/cbflib-0.9.7+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.7+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.7+dfsg1/include -I/build/cbflib-0.9.7+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.7+dfsg1/examples/testreals.c -L/build/cbflib-0.9.7+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.7+dfsg1/bin/testreals mkdir -p /build/cbflib-0.9.7+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.7+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.7+dfsg1/include -I/build/cbflib-0.9.7+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.7+dfsg1/examples/testflat.c -L/build/cbflib-0.9.7+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.7+dfsg1/bin/testflat mkdir -p /build/cbflib-0.9.7+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.7+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.7+dfsg1/include -I/build/cbflib-0.9.7+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.7+dfsg1/examples/testflatpacked.c -L/build/cbflib-0.9.7+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.7+dfsg1/bin/testflatpacked mkdir -p /build/cbflib-0.9.7+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.7+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.7+dfsg1/include -I/build/cbflib-0.9.7+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.7+dfsg1/examples/testhdf5.c -L/build/cbflib-0.9.7+dfsg1/lib /build/cbflib-0.9.7+dfsg1/lib/libcbf.a \ -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 \ -o /build/cbflib-0.9.7+dfsg1/bin/testhdf5.tmp mv /build/cbflib-0.9.7+dfsg1/bin/testhdf5.tmp /build/cbflib-0.9.7+dfsg1/bin/testhdf5 mkdir -p /build/cbflib-0.9.7+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.7+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.7+dfsg1/include -I/build/cbflib-0.9.7+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.7+dfsg1/examples/test_cbf_airy_disk.c -L/build/cbflib-0.9.7+dfsg1/lib /build/cbflib-0.9.7+dfsg1/lib/libcbf.a \ -lm -o /build/cbflib-0.9.7+dfsg1/bin/test_cbf_airy_disk.tmp mv /build/cbflib-0.9.7+dfsg1/bin/test_cbf_airy_disk.tmp /build/cbflib-0.9.7+dfsg1/bin/test_cbf_airy_disk mkdir -p /build/cbflib-0.9.7+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-0.9.7+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.7+dfsg1/include -I/build/cbflib-0.9.7+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.7+dfsg1/examples/cbf_testxfelread.c -L/build/cbflib-0.9.7+dfsg1/lib /build/cbflib-0.9.7+dfsg1/lib/libcbf.a \ -lm -o /build/cbflib-0.9.7+dfsg1/bin/cbf_testxfelread.tmp mv /build/cbflib-0.9.7+dfsg1/bin/cbf_testxfelread.tmp /build/cbflib-0.9.7+dfsg1/bin/cbf_testxfelread make[2]: Leaving directory '/build/cbflib-0.9.7+dfsg1' # build the python extension. dh_auto_build --buildsystem=pybuild --sourcedirectory=pycbf I: pybuild base:240: /usr/bin/python3 setup.py build /build/cbflib-0.9.7+dfsg1/pycbf/setup.py:7: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup, Extension running build running build_py copying pycbf.py -> /build/cbflib-0.9.7+dfsg1/.pybuild/cpython3_3.11_pycbf/build running build_ext building '_pycbf' extension creating build creating build/src creating build/temp.linux-x86_64-3.11 x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/cbflib-0.9.7+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DSWIG_PYTHON_STRICT_BYTE_CHAR -I../include -I/include -I/usr/include/python3.11 -c ../src/cbf_simple.c -o build/temp.linux-x86_64-3.11/../src/cbf_simple.o -I/usr/include/hdf5/serial x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/cbflib-0.9.7+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DSWIG_PYTHON_STRICT_BYTE_CHAR -I../include -I/include -I/usr/include/python3.11 -c pycbf_wrap.c -o build/temp.linux-x86_64-3.11/pycbf_wrap.o -I/usr/include/hdf5/serial pycbf_wrap.c:4078: warning: "SWIG_PYTHON_STRICT_BYTE_CHAR" redefined 4078 | #define SWIG_PYTHON_STRICT_BYTE_CHAR | : note: this is the location of the previous definition pycbf_wrap.c: In function 'cbf_handle_struct_set_integerarray': pycbf_wrap.c:4139:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4139 | void *array; | ^~~~~ pycbf_wrap.c:4138:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 4138 | size_t els, ele; | ^~~ pycbf_wrap.c:4138:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4138 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_integerarray_wdims': pycbf_wrap.c:4154:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4154 | void *array; | ^~~~~ pycbf_wrap.c:4153:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 4153 | size_t els, ele; | ^~~ pycbf_wrap.c:4153:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4153 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_integerarray_wdims_fs': pycbf_wrap.c:4174:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4174 | void *array; | ^~~~~ pycbf_wrap.c:4173:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 4173 | size_t els, ele; | ^~~ pycbf_wrap.c:4173:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4173 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_integerarray_wdims_sf': pycbf_wrap.c:4194:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4194 | void *array; | ^~~~~ pycbf_wrap.c:4193:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 4193 | size_t els, ele; | ^~~ pycbf_wrap.c:4193:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4193 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_realarray': pycbf_wrap.c:4214:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4214 | void *array; | ^~~~~ pycbf_wrap.c:4213:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 4213 | size_t els, ele; | ^~~ pycbf_wrap.c:4213:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4213 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_realarray_wdims': pycbf_wrap.c:4229:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4229 | void *array; | ^~~~~ pycbf_wrap.c:4228:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 4228 | size_t els, ele; | ^~~ pycbf_wrap.c:4228:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4228 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_realarray_wdims_fs': pycbf_wrap.c:4249:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4249 | void *array; | ^~~~~ pycbf_wrap.c:4248:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 4248 | size_t els, ele; | ^~~ pycbf_wrap.c:4248:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4248 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_realarray_wdims_sf': pycbf_wrap.c:4269:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4269 | void *array; | ^~~~~ pycbf_wrap.c:4268:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 4268 | size_t els, ele; | ^~~ pycbf_wrap.c:4268:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4268 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_image': pycbf_wrap.c:4774:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4774 | void *array; | ^~~~~ pycbf_wrap.c:4772:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4772 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_image_fs': pycbf_wrap.c:4790:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4790 | void *array; | ^~~~~ pycbf_wrap.c:4788:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4788 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_image_sf': pycbf_wrap.c:4806:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4806 | void *array; | ^~~~~ pycbf_wrap.c:4804:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4804 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_real_image': pycbf_wrap.c:4822:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4822 | void *array; | ^~~~~ pycbf_wrap.c:4820:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4820 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_real_image_fs': pycbf_wrap.c:4838:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4838 | void *array; | ^~~~~ pycbf_wrap.c:4836:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4836 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_real_image_sf': pycbf_wrap.c:4854:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4854 | void *array; | ^~~~~ pycbf_wrap.c:4852:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4852 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_3d_image': pycbf_wrap.c:4870:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4870 | void *array; | ^~~~~ pycbf_wrap.c:4868:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4868 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_3d_image_fs': pycbf_wrap.c:4886:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4886 | void *array; | ^~~~~ pycbf_wrap.c:4884:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4884 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_3d_image_sf': pycbf_wrap.c:4902:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4902 | void *array; | ^~~~~ pycbf_wrap.c:4900:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4900 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_real_3d_image': pycbf_wrap.c:4918:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4918 | void *array; | ^~~~~ pycbf_wrap.c:4916:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4916 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_real_3d_image_fs': pycbf_wrap.c:4934:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4934 | void *array; | ^~~~~ pycbf_wrap.c:4932:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4932 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_real_3d_image_sf': pycbf_wrap.c:4950:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4950 | void *array; | ^~~~~ pycbf_wrap.c:4948:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4948 | size_t els; | ^~~ pycbf_wrap.c: In function '_wrap_cbf_positioner_struct_matrix_set': pycbf_wrap.c:6313:13: warning: the comparison will always evaluate as 'true' for the pointer operand in 'arg2 + (sizetype)(ii * 32)' must not be NULL [-Waddress] 6313 | if (arg2[ii]) { | ^~~~ pycbf_wrap.c: At top level: pycbf_wrap.c:3155:16: warning: 'convert_iarray' defined but not used [-Wunused-function] 3155 | static int convert_iarray(PyObject *input, int *ptr, int size) { | ^~~~~~~~~~~~~~ pycbf_wrap.c:3131:17: warning: 'convert_larray' defined but not used [-Wunused-function] 3131 | static long convert_larray(PyObject *input, long *ptr, int size) { | ^~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/cbflib-0.9.7+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.11/../src/cbf_simple.o build/temp.linux-x86_64-3.11/pycbf_wrap.o -L../solib/ -L../lib/ -L/build/cbflib-0.9.7+dfsg1/lib -lcbf -o /build/cbflib-0.9.7+dfsg1/.pybuild/cpython3_3.11_pycbf/build/_pycbf.cpython-311-x86_64-linux-gnu.so make[1]: Leaving directory '/build/cbflib-0.9.7+dfsg1' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/cbflib-0.9.7+dfsg1' # nothing to build here make[1]: Leaving directory '/build/cbflib-0.9.7+dfsg1' create-stamp debian/debhelper-build-stamp dh_testroot -O--no-parallel dh_prep -O--no-parallel debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/cbflib-0.9.7+dfsg1' # install the C/C++ library dh_auto_install make -j1 install DESTDIR=/build/cbflib-0.9.7\+dfsg1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/cbflib-0.9.7+dfsg1' mkdir -p /build/cbflib-0.9.7+dfsg1/bin g++ -g -O2 -ffile-prefix-map=/build/cbflib-0.9.7+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.7+dfsg1/include -I/build/cbflib-0.9.7+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.7+dfsg1/examples/cif2c.c -L/build/cbflib-0.9.7+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.7+dfsg1/bin/cif2c mkdir -p /build/cbflib-0.9.7+dfsg1/bin g++ -g -O2 -ffile-prefix-map=/build/cbflib-0.9.7+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.7+dfsg1/include -I/build/cbflib-0.9.7+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.7+dfsg1/examples/testcell.C -L/build/cbflib-0.9.7+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.7+dfsg1/bin/testcell mkdir -p /build/cbflib-0.9.7+dfsg1/debian/tmp/usr mkdir -p /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu mkdir -p /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin mkdir -p /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/include mkdir -p /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/include/cbflib chmod 755 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a chmod: cannot access '/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a': No such file or directory make[2]: [Makefile:1235: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf_old.a cp: cannot stat '/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a': No such file or directory make[2]: [Makefile:1236: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.7+dfsg1/lib/libcbf.a /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a cp /build/cbflib-0.9.7+dfsg1/solib/libcbf.so /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so.1.0.0 ln -s -f -r /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so.1.0.0 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so.1 ln -s -f -r /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so.1.0.0 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so cp /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/cbflib.ini /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/cbflib.ini_old cp: cannot stat '/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/cbflib.ini': No such file or directory make[2]: [Makefile:1241: baseinstall] Error 1 (ignored) echo "LD_LIBRARY_PATH=/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/LIB:/build/cbflib-0.9.7+dfsg1/lib:$LD_LIBRARY_PATH;export LD_LIBRARY_PATH;" > /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/cbflib.ini echo "HDF5_PLUGIN_PATH=/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/lib:$HDF5_PLUGIN_PATH" >> /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/cbflib.ini echo "export HDF5_PLUGIN_PATH" >> /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/cbflib.ini cp /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/adscimg2cbf /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/adscimg2cbf_old cp: cannot stat '/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/adscimg2cbf': No such file or directory make[2]: [Makefile:1245: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.7+dfsg1/bin/adscimg2cbf /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/adscimg2cbf cp /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/cbf2adscimg /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/cbf2adscimg_old cp: cannot stat '/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/cbf2adscimg': No such file or directory make[2]: [Makefile:1247: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.7+dfsg1/bin/cbf2adscimg /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/cbf2adscimg cp /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers \ /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers_old cp: cannot stat '/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers': No such file or directory make[2]: [Makefile:1249: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.7+dfsg1/bin/cbf_standardize_numbers /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers cp /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/convert_image /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/convert_image_old cp: cannot stat '/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/convert_image': No such file or directory make[2]: [Makefile:1251: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.7+dfsg1/bin/convert_image /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/convert_image cp /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/convert_minicbf /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/convert_minicbf_old cp: cannot stat '/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/convert_minicbf': No such file or directory make[2]: [Makefile:1253: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.7+dfsg1/bin/convert_minicbf /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/convert_minicbf cp /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/makecbf /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/makecbf_old cp: cannot stat '/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/makecbf': No such file or directory make[2]: [Makefile:1255: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.7+dfsg1/bin/makecbf /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/makecbf cp /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/img2cif /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/img2cif_old cp: cannot stat '/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/img2cif': No such file or directory make[2]: [Makefile:1257: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.7+dfsg1/bin/img2cif /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/img2cif cp /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/cif2cbf /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/cif2cbf_old cp: cannot stat '/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/cif2cbf': No such file or directory make[2]: [Makefile:1259: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.7+dfsg1/bin/cif2cbf /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/cif2cbf cp /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/minicbf2nexus /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/minicbf2nexus_old cp: cannot stat '/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/minicbf2nexus': No such file or directory make[2]: [Makefile:1261: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.7+dfsg1/bin/minicbf2nexus /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/minicbf2nexus cp /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/cbf2nexus /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/cbf2nexus_old cp: cannot stat '/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/cbf2nexus': No such file or directory make[2]: [Makefile:1263: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.7+dfsg1/bin/cbf2nexus /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/cbf2nexus cp /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/nexus2cbf /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/nexus2cbf_old cp: cannot stat '/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/nexus2cbf': No such file or directory make[2]: [Makefile:1265: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.7+dfsg1/bin/nexus2cbf /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/nexus2cbf cp /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/roi_peaksearch /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/roi_peaksearch_old cp: cannot stat '/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/roi_peaksearch': No such file or directory make[2]: [Makefile:1267: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.7+dfsg1/bin/roi_peaksearch /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/roi_peaksearch cp /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/sequence_match /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/sequence_match_old cp: cannot stat '/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/sequence_match': No such file or directory make[2]: [Makefile:1269: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.7+dfsg1/bin/sequence_match /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/sequence_match cp /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/testalloc /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/testalloc_old cp: cannot stat '/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/testalloc': No such file or directory make[2]: [Makefile:1271: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.7+dfsg1/bin/testalloc /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/testalloc cp /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/arvai_test /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/arvai_test_old cp: cannot stat '/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/arvai_test': No such file or directory make[2]: [Makefile:1273: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.7+dfsg1/bin/arvai_test /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/arvai_test cp /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/cif2c /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/cif2c_old cp: cannot stat '/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/cif2c': No such file or directory make[2]: [Makefile:1275: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.7+dfsg1/bin/cif2c /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/cif2c cp /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/testreals /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/testreals_old cp: cannot stat '/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/testreals': No such file or directory make[2]: [Makefile:1277: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.7+dfsg1/bin/testreals /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/testreals cp /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/testflat /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/testflat_old cp: cannot stat '/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/testflat': No such file or directory make[2]: [Makefile:1279: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.7+dfsg1/bin/testflat /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/testflat cp /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/testflatpacked /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/testflatpacked_old cp: cannot stat '/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/testflatpacked': No such file or directory make[2]: [Makefile:1281: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.7+dfsg1/bin/testflatpacked /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/testflatpacked #-cp /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/tiff2cbf /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/tiff2cbf_old #cp /build/cbflib-0.9.7+dfsg1/bin/tiff2cbf /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/tiff2cbf cp /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk_old cp: cannot stat '/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk': No such file or directory make[2]: [Makefile:1285: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.7+dfsg1/bin/test_cbf_airy_disk /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk cp /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk_old cp /build/cbflib-0.9.7+dfsg1/bin/test_cbf_airy_disk /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk cp /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/testhdf5 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/testhdf5_old cp: cannot stat '/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/testhdf5': No such file or directory make[2]: [Makefile:1289: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.7+dfsg1/bin/testhdf5 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/testhdf5 cp /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf_old.sh cp: cannot stat '/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh': No such file or directory make[2]: [Makefile:1291: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.7+dfsg1/examples/batch_convert_minicbf.sh /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh chmod -R 755 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/include/cbflib rm -rf /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/include/cbflib_old cp -r /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/include/cbflib /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/include/cbflib_old rm -rf /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/include/cbflib cp -r /build/cbflib-0.9.7+dfsg1/include /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/include/cbflib chmod 644 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a chmod 644 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libimg.a chmod: cannot access '/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libimg.a': No such file or directory make[2]: [Makefile:1299: baseinstall] Error 1 (ignored) chmod 644 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libfcb.a chmod: cannot access '/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libfcb.a': No such file or directory make[2]: [Makefile:1300: baseinstall] Error 1 (ignored) chmod 755 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so chmod 755 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libimg.so chmod: cannot access '/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libimg.so': No such file or directory make[2]: [Makefile:1302: baseinstall] Error 1 (ignored) chmod 755 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libfcb.so chmod: cannot access '/build/cbflib-0.9.7+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libfcb.so': No such file or directory make[2]: [Makefile:1303: baseinstall] Error 1 (ignored) chmod 755 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/arvai_test chmod 755 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/cbf2nexus chmod 755 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers chmod 755 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/cif2c chmod 755 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/cif2cbf chmod 755 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/convert_image chmod 755 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/convert_minicbf chmod 755 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/img2cif chmod 755 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/makecbf chmod 755 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/minicbf2nexus chmod 755 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/nexus2cbf chmod 755 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/roi_peaksearch chmod 755 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/sequence_match chmod 755 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/testalloc chmod 755 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/testflat chmod 755 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/testflatpacked chmod 755 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/testhdf5 chmod 755 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/testreals chmod 755 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk chmod 755 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh chmod 644 /build/cbflib-0.9.7+dfsg1/debian/tmp/usr/include/cbflib/*.h make[2]: Leaving directory '/build/cbflib-0.9.7+dfsg1' # install the python extension dh_auto_install --buildsystem=pybuild --sourcedirectory=pycbf I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/cbflib-0.9.7+dfsg1/debian/python3-pycbf /build/cbflib-0.9.7+dfsg1/pycbf/setup.py:7: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup, Extension running install running build running build_py running build_ext running install_lib creating /build/cbflib-0.9.7+dfsg1/debian/python3-pycbf creating /build/cbflib-0.9.7+dfsg1/debian/python3-pycbf/usr creating /build/cbflib-0.9.7+dfsg1/debian/python3-pycbf/usr/lib creating /build/cbflib-0.9.7+dfsg1/debian/python3-pycbf/usr/lib/python3.11 creating /build/cbflib-0.9.7+dfsg1/debian/python3-pycbf/usr/lib/python3.11/dist-packages copying /build/cbflib-0.9.7+dfsg1/.pybuild/cpython3_3.11_pycbf/build/_pycbf.cpython-311-x86_64-linux-gnu.so -> /build/cbflib-0.9.7+dfsg1/debian/python3-pycbf/usr/lib/python3.11/dist-packages copying /build/cbflib-0.9.7+dfsg1/.pybuild/cpython3_3.11_pycbf/build/pycbf.py -> /build/cbflib-0.9.7+dfsg1/debian/python3-pycbf/usr/lib/python3.11/dist-packages byte-compiling /build/cbflib-0.9.7+dfsg1/debian/python3-pycbf/usr/lib/python3.11/dist-packages/pycbf.py to pycbf.cpython-311.pyc running install_egg_info Writing /build/cbflib-0.9.7+dfsg1/debian/python3-pycbf/usr/lib/python3.11/dist-packages/_pycbf-0.0.0.egg-info make[1]: Leaving directory '/build/cbflib-0.9.7+dfsg1' debian/rules override_dh_auto_install-indep make[1]: Entering directory '/build/cbflib-0.9.7+dfsg1' # nothing to install here make[1]: Leaving directory '/build/cbflib-0.9.7+dfsg1' debian/rules override_dh_install-arch make[1]: Entering directory '/build/cbflib-0.9.7+dfsg1' # cbflib-bin dh_install -p cbflib-bin usr/bin/cbf2nexus dh_install -p cbflib-bin usr/bin/cif2cbf dh_install -p cbflib-bin usr/bin/convert_image dh_install -p cbflib-bin usr/bin/img2cif dh_install -p cbflib-bin usr/bin/makecbf # libcbf-dev dh_install -p libcbf-dev usr/include/cbflib/* dh_install -p libcbf-dev usr/lib/*/lib*.a dh_install -p libcbf-dev usr/lib/*/lib*.so # libcbf1 dh_install -p libcbf1 usr/lib/*/libcbf.so.* # Exclude duplicates (lintian check duplicate-files) dh_install -Xcif_img_1.3.2_22Jun05.html -Xcif_img_1.3.1.html make[1]: Leaving directory '/build/cbflib-0.9.7+dfsg1' debian/rules override_dh_install-indep make[1]: Entering directory '/build/cbflib-0.9.7+dfsg1' # cbflib-doc dh_install -p cbflib-doc doc/*.html usr/share/doc/cbflib-doc/html make[1]: Leaving directory '/build/cbflib-0.9.7+dfsg1' debian/rules override_dh_installdocs make[1]: Entering directory '/build/cbflib-0.9.7+dfsg1' # cbflib-doc dh_installdocs -p cbflib-doc html_graphics dh_installdocs: warning: Cannot auto-detect main package for cbflib-doc. If the default is wrong, please use --doc-main-package # libcbf-dev dh_installdocs -p libcbf-dev README dh_installdocs make[1]: Leaving directory '/build/cbflib-0.9.7+dfsg1' dh_installchangelogs -O--no-parallel debian/rules override_dh_installman make[1]: Entering directory '/build/cbflib-0.9.7+dfsg1' dh_installman -p cbflib-bin debian/manpages/* make[1]: Leaving directory '/build/cbflib-0.9.7+dfsg1' dh_python3 -O--no-parallel dh_installsystemduser -O--no-parallel dh_perl -O--no-parallel dh_link -O--no-parallel dh_strip_nondeterminism -O--no-parallel dh_compress -O--no-parallel dh_fixperms -O--no-parallel dh_missing -O--no-parallel dh_dwz -a -O--no-parallel dh_strip -a -O--no-parallel dh_makeshlibs -a -O--no-parallel dh_shlibdeps -a -O--no-parallel dh_installdeb -O--no-parallel dh_gencontrol -O--no-parallel dh_md5sums -O--no-parallel dh_builddeb -O--no-parallel dpkg-deb: building package 'cbflib-doc' in '../cbflib-doc_0.9.7+dfsg1-2_all.deb'. dpkg-deb: building package 'libcbf1' in '../libcbf1_0.9.7+dfsg1-2_amd64.deb'. dpkg-deb: building package 'cbflib-bin-dbgsym' in '../cbflib-bin-dbgsym_0.9.7+dfsg1-2_amd64.deb'. dpkg-deb: building package 'libcbf-dev' in '../libcbf-dev_0.9.7+dfsg1-2_amd64.deb'. dpkg-deb: building package 'cbflib-bin' in '../cbflib-bin_0.9.7+dfsg1-2_amd64.deb'. dpkg-deb: building package 'libcbf1-dbgsym' in '../libcbf1-dbgsym_0.9.7+dfsg1-2_amd64.deb'. dpkg-deb: building package 'python3-pycbf' in '../python3-pycbf_0.9.7+dfsg1-2_amd64.deb'. dpkg-deb: building package 'python3-pycbf-dbgsym' in '../python3-pycbf-dbgsym_0.9.7+dfsg1-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../cbflib_0.9.7+dfsg1-2_amd64.buildinfo dpkg-genchanges --build=binary -O../cbflib_0.9.7+dfsg1-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1993396 and its subdirectories I: Current time: Thu Apr 13 20:26:20 -12 2023 I: pbuilder-time-stamp: 1681460780