I: pbuilder: network access will be disabled during build
I: Current time: Thu Jun 20 11:39:20 -12 2024
I: pbuilder-time-stamp: 1718926760
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [clipper_2.1.20201109-1.dsc]
I: copying [./clipper_2.1.20201109.orig.tar.gz]
I: copying [./clipper_2.1.20201109-1.debian.tar.xz]
I: Extracting source
gpgv: Signature made Tue Nov 17 04:51:49 2020 -12
gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287
gpgv: issuer "merkys@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./clipper_2.1.20201109-1.dsc: no acceptable signature found
dpkg-source: info: extracting clipper in clipper-2.1.20201109
dpkg-source: info: unpacking clipper_2.1.20201109.orig.tar.gz
dpkg-source: info: unpacking clipper_2.1.20201109-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying add-mmdb2-to-examples-LIBS.patch
dpkg-source: info: applying narrowing-conversions.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/3983400/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='amd64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 '
DISTRIBUTION='bookworm'
HOME='/root'
HOST_ARCH='amd64'
IFS='
'
INVOCATION_ID='9aac50bf5e3f4be79ba72678cedb88cb'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='3983400'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WOIwmJ5X/pbuilderrc_GeSa --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WOIwmJ5X/b1 --logfile b1/build.log clipper_2.1.20201109-1.dsc'
SUDO_GID='111'
SUDO_UID='106'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://85.184.249.68:3128'
I: uname -a
Linux ionos15-amd64 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux
I: ls -l /bin
total 5632
-rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash
-rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2
-rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep
-rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2
-rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore
-rwxr-xr-x 1 root root 44016 Sep 20 2022 cat
-rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp
-rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod
-rwxr-xr-x 1 root root 72752 Sep 20 2022 chown
-rwxr-xr-x 1 root root 151152 Sep 20 2022 cp
-rwxr-xr-x 1 root root 125640 Jan 5 2023 dash
-rwxr-xr-x 1 root root 121904 Sep 20 2022 date
-rwxr-xr-x 1 root root 89240 Sep 20 2022 dd
-rwxr-xr-x 1 root root 102200 Sep 20 2022 df
-rwxr-xr-x 1 root root 151344 Sep 20 2022 dir
-rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg
lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname
-rwxr-xr-x 1 root root 43856 Sep 20 2022 echo
-rwxr-xr-x 1 root root 41 Jan 24 2023 egrep
-rwxr-xr-x 1 root root 35664 Sep 20 2022 false
-rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep
-rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt
-rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount
-rwxr-xr-x 1 root root 203152 Jan 24 2023 grep
-rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip
-rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe
-rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip
-rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname
-rwxr-xr-x 1 root root 72824 Sep 20 2022 ln
-rwxr-xr-x 1 root root 53024 Mar 23 2023 login
-rwxr-xr-x 1 root root 151344 Sep 20 2022 ls
-rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk
-rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir
-rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod
-rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp
-rwxr-xr-x 1 root root 59712 Mar 22 2023 more
-rwsr-xr-x 1 root root 59704 Mar 22 2023 mount
-rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint
-rwxr-xr-x 1 root root 142968 Sep 20 2022 mv
lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd
lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash
-rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink
-rwxr-xr-x 1 root root 72752 Sep 20 2022 rm
-rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir
-rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts
-rwxr-xr-x 1 root root 126424 Jan 5 2023 sed
lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash
-rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep
-rwxr-xr-x 1 root root 85008 Sep 20 2022 stty
-rwsr-xr-x 1 root root 72000 Mar 22 2023 su
-rwxr-xr-x 1 root root 39824 Sep 20 2022 sync
-rwxr-xr-x 1 root root 531984 Apr 6 2023 tar
-rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile
-rwxr-xr-x 1 root root 109616 Sep 20 2022 touch
-rwxr-xr-x 1 root root 35664 Sep 20 2022 true
-rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server
-rwsr-xr-x 1 root root 35128 Mar 22 2023 umount
-rwxr-xr-x 1 root root 43888 Sep 20 2022 uname
-rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress
-rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir
-rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl
lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat
-rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp
-rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff
-rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep
-rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep
-rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce
-rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep
-rwxr-xr-x 1 root root 2206 Apr 9 2022 zless
-rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore
-rwxr-xr-x 1 root root 4577 Apr 9 2022 znew
I: user script /srv/workspace/pbuilder/3983400/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 12), fftw-dev, gfortran, libccp4-dev, libmmdb2-dev, sfftw-dev, doxygen
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19596 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on fftw-dev; however:
Package fftw-dev is not installed.
pbuilder-satisfydepends-dummy depends on gfortran; however:
Package gfortran is not installed.
pbuilder-satisfydepends-dummy depends on libccp4-dev; however:
Package libccp4-dev is not installed.
pbuilder-satisfydepends-dummy depends on libmmdb2-dev; however:
Package libmmdb2-dev is not installed.
pbuilder-satisfydepends-dummy depends on sfftw-dev; however:
Package sfftw-dev is not installed.
pbuilder-satisfydepends-dummy depends on doxygen; however:
Package doxygen is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} fftw-dev{a} fftw2{a} file{a} gettext{a} gettext-base{a} gfortran{a} gfortran-12{a} groff-base{a} ibverbs-providers{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libccp4-data{a} libccp4-dev{a} libccp4c0{a} libccp4f0{a} libclang-cpp14{a} libclang1-14{a} libdebhelper-perl{a} libedit2{a} libelf1{a} libevent-core-2.1-7{a} libevent-pthreads-2.1-7{a} libfabric1{a} libfile-stripnondeterminism-perl{a} libgfortran-12-dev{a} libgfortran5{a} libhwloc-plugins{a} libhwloc15{a} libibverbs1{a} libicu72{a} libllvm14{a} libmagic-mgc{a} libmagic1{a} libmmdb2-0{a} libmmdb2-dev{a} libmunge2{a} libnl-3-200{a} libnl-route-3-200{a} libnuma1{a} libopenmpi3{a} libpciaccess0{a} libpipeline1{a} libpmix2{a} libpsm-infinipath1{a} libpsm2-2{a} librdmacm1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libucx0{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxnvctrl0{a} libz3-4{a} m4{a} man-db{a} ocl-icd-libopencl1{a} po-debconf{a} sensible-utils{a} sfftw-dev{a} sfftw2{a}
The following packages are RECOMMENDED but will NOT be installed:
curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget
0 packages upgraded, 77 newly installed, 0 to remove and 0 not upgraded.
Need to get 90.9 MB of archives. After unpacking 391 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 2 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB]
Get: 3 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB]
Get: 4 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB]
Get: 5 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB]
Get: 6 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB]
Get: 7 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB]
Get: 8 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB]
Get: 9 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB]
Get: 10 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB]
Get: 11 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB]
Get: 12 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB]
Get: 13 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get: 15 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB]
Get: 16 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 17 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB]
Get: 18 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 19 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 20 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B]
Get: 21 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 22 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 23 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB]
Get: 24 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB]
Get: 25 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB]
Get: 26 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB]
Get: 27 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB]
Get: 28 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 29 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 30 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB]
Get: 31 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB]
Get: 32 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB]
Get: 33 http://deb.debian.org/debian bookworm/main amd64 libz3-4 amd64 4.8.12-3.1 [7216 kB]
Get: 34 http://deb.debian.org/debian bookworm/main amd64 libllvm14 amd64 1:14.0.6-12 [21.8 MB]
Get: 35 http://deb.debian.org/debian bookworm/main amd64 libclang-cpp14 amd64 1:14.0.6-12 [11.1 MB]
Get: 36 http://deb.debian.org/debian bookworm/main amd64 libclang1-14 amd64 1:14.0.6-12 [6157 kB]
Get: 37 http://deb.debian.org/debian bookworm/main amd64 doxygen amd64 1.9.4-4 [4611 kB]
Get: 38 http://deb.debian.org/debian bookworm/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-8 [131 kB]
Get: 39 http://deb.debian.org/debian bookworm/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-8 [53.6 kB]
Get: 40 http://deb.debian.org/debian bookworm/main amd64 libnl-3-200 amd64 3.7.0-0.2+b1 [63.1 kB]
Get: 41 http://deb.debian.org/debian bookworm/main amd64 libnl-route-3-200 amd64 3.7.0-0.2+b1 [185 kB]
Get: 42 http://deb.debian.org/debian bookworm/main amd64 libibverbs1 amd64 44.0-2 [60.7 kB]
Get: 43 http://deb.debian.org/debian bookworm/main amd64 ibverbs-providers amd64 44.0-2 [335 kB]
Get: 44 http://deb.debian.org/debian bookworm/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.2 [168 kB]
Get: 45 http://deb.debian.org/debian bookworm/main amd64 libnuma1 amd64 2.0.16-1 [21.0 kB]
Get: 46 http://deb.debian.org/debian bookworm/main amd64 libpsm2-2 amd64 11.2.185-2 [180 kB]
Get: 47 http://deb.debian.org/debian bookworm/main amd64 librdmacm1 amd64 44.0-2 [68.6 kB]
Get: 48 http://deb.debian.org/debian bookworm/main amd64 libfabric1 amd64 1.17.0-3 [627 kB]
Get: 49 http://deb.debian.org/debian bookworm/main amd64 libhwloc15 amd64 2.9.0-1 [154 kB]
Get: 50 http://deb.debian.org/debian bookworm/main amd64 libmunge2 amd64 0.5.15-2 [19.5 kB]
Get: 51 http://deb.debian.org/debian bookworm/main amd64 libpciaccess0 amd64 0.17-2 [51.4 kB]
Get: 52 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB]
Get: 53 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB]
Get: 54 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB]
Get: 55 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2 [292 kB]
Get: 56 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2 [759 kB]
Get: 57 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB]
Get: 58 http://deb.debian.org/debian bookworm/main amd64 libxnvctrl0 amd64 525.85.05-1 [13.3 kB]
Get: 59 http://deb.debian.org/debian bookworm/main amd64 ocl-icd-libopencl1 amd64 2.3.1-1 [43.0 kB]
Get: 60 http://deb.debian.org/debian bookworm/main amd64 libhwloc-plugins amd64 2.9.0-1 [17.5 kB]
Get: 61 http://deb.debian.org/debian bookworm/main amd64 libpmix2 amd64 4.2.2-1+b1 [622 kB]
Get: 62 http://deb.debian.org/debian bookworm/main amd64 libucx0 amd64 1.13.1-1 [860 kB]
Get: 63 http://deb.debian.org/debian bookworm/main amd64 libopenmpi3 amd64 4.1.4-3+b1 [2422 kB]
Get: 64 http://deb.debian.org/debian bookworm/main amd64 fftw2 amd64 2.1.5-6 [249 kB]
Get: 65 http://deb.debian.org/debian bookworm/main amd64 fftw-dev amd64 2.1.5-6 [281 kB]
Get: 66 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB]
Get: 67 http://deb.debian.org/debian bookworm/main amd64 libgfortran-12-dev amd64 12.2.0-14 [834 kB]
Get: 68 http://deb.debian.org/debian bookworm/main amd64 gfortran-12 amd64 12.2.0-14 [10.2 MB]
Get: 69 http://deb.debian.org/debian bookworm/main amd64 gfortran amd64 4:12.2.0-3 [1428 B]
Get: 70 http://deb.debian.org/debian bookworm/main amd64 libccp4-data all 8.0.0-2 [62.3 kB]
Get: 71 http://deb.debian.org/debian bookworm/main amd64 libccp4c0 amd64 8.0.0-2 [88.5 kB]
Get: 72 http://deb.debian.org/debian bookworm/main amd64 libmmdb2-0 amd64 2.0.22-1 [338 kB]
Get: 73 http://deb.debian.org/debian bookworm/main amd64 libccp4f0 amd64 8.0.0-2 [210 kB]
Get: 74 http://deb.debian.org/debian bookworm/main amd64 libccp4-dev amd64 8.0.0-2 [42.8 kB]
Get: 75 http://deb.debian.org/debian bookworm/main amd64 libmmdb2-dev amd64 2.0.22-1 [92.9 kB]
Get: 76 http://deb.debian.org/debian bookworm/main amd64 sfftw2 amd64 2.1.5-6 [247 kB]
Get: 77 http://deb.debian.org/debian bookworm/main amd64 sfftw-dev amd64 2.1.5-6 [281 kB]
Fetched 90.9 MB in 3s (36.2 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sensible-utils.
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(Reading database ... 19596 files and directories currently installed.)
Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ...
Unpacking sensible-utils (0.0.17+nmu1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_amd64.deb ...
Unpacking libmagic-mgc (1:5.44-3) ...
Selecting previously unselected package libmagic1:amd64.
Preparing to unpack .../02-libmagic1_1%3a5.44-3_amd64.deb ...
Unpacking libmagic1:amd64 (1:5.44-3) ...
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Setting up libmmdb2-0:amd64 (2.0.22-1) ...
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Setting up libmagic1:amd64 (1:5.44-3) ...
Setting up gettext-base (0.21-12) ...
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Setting up libevent-core-2.1-7:amd64 (2.1.12-stable-8) ...
Setting up libmmdb2-dev (2.0.22-1) ...
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Setting up libccp4c0:amd64 (8.0.0-2) ...
Setting up libgfortran5:amd64 (12.2.0-14) ...
Setting up autoconf (2.71-3) ...
Setting up libnuma1:amd64 (2.0.16-1) ...
Setting up sensible-utils (0.0.17+nmu1) ...
Setting up ocl-icd-libopencl1:amd64 (2.3.1-1) ...
Setting up libuchardet0:amd64 (0.0.7-1) ...
Setting up libnl-3-200:amd64 (3.7.0-0.2+b1) ...
Setting up libpsm2-2 (11.2.185-2) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libpsm-infinipath1 (3.3+20.604758e7-6.2) ...
update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode
Setting up libbsd0:amd64 (0.11.7-2) ...
Setting up libelf1:amd64 (0.188-2.1) ...
Setting up libxml2:amd64 (2.9.14+dfsg-1.2) ...
Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-8) ...
Setting up libccp4f0:amd64 (8.0.0-2) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up libxdmcp6:amd64 (1:1.1.2-3) ...
Setting up libxcb1:amd64 (1.15-1) ...
Setting up gettext (0.21-12) ...
Setting up libccp4-dev:amd64 (8.0.0-2) ...
Setting up libtool (2.4.7-5) ...
Setting up libedit2:amd64 (3.1-20221030-2) ...
Setting up libgfortran-12-dev:amd64 (12.2.0-14) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up libnl-route-3-200:amd64 (3.7.0-0.2+b1) ...
Setting up dh-autoreconf (20) ...
Setting up gfortran-12 (12.2.0-14) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up libllvm14:amd64 (1:14.0.6-12) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.22.4-10) ...
Setting up libx11-6:amd64 (2:1.8.4-2) ...
Setting up libibverbs1:amd64 (44.0-2) ...
Setting up ibverbs-providers:amd64 (44.0-2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libxext6:amd64 (2:1.3.4-1+b1) ...
Setting up libclang1-14 (1:14.0.6-12) ...
Setting up man-db (2.11.2-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:12.2.0-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
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Setting up debhelper (13.11.4) ...
Setting up libhwloc-plugins:amd64 (2.9.0-1) ...
Setting up doxygen (1.9.4-4) ...
Setting up libfabric1:amd64 (1.17.0-3) ...
Setting up libpmix2:amd64 (4.2.2-1+b1) ...
Setting up libopenmpi3:amd64 (4.1.4-3+b1) ...
Setting up sfftw2 (2.1.5-6) ...
Setting up fftw2 (2.1.5-6) ...
Setting up sfftw-dev (2.1.5-6) ...
Setting up fftw-dev (2.1.5-6) ...
Processing triggers for libc-bin (2.36-9) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/clipper-2.1.20201109/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../clipper_2.1.20201109-1_source.changes
dpkg-buildpackage: info: source package clipper
dpkg-buildpackage: info: source version 2.1.20201109-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andrius Merkys <merkys@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
debian/rules clean
dh clean --ddeb-migration='libclipper2-dbg (<< 2.1.20160809-1~)'
dh_auto_clean "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)"
dh_autoreconf_clean "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)"
debian/rules override_dh_clean
make[1]: Entering directory '/build/clipper-2.1.20201109'
rm -f doxy.core.tag
rm -rf doc/
dh_clean
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/libclipper-dev.substvars debian/libclipper2.substvars debian/libclipper-doc.substvars debian/files
rm -fr -- debian/libclipper-dev/ debian/tmp/ debian/libclipper2/ debian/libclipper-doc/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
make[1]: Leaving directory '/build/clipper-2.1.20201109'
debian/rules binary
dh binary --ddeb-migration='libclipper2-dbg (<< 2.1.20160809-1~)'
dh_update_autotools_config "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)"
cp -an --reflink=auto build-aux/config.guess debian/.debhelper/bucket/files/4676029966e14b0a9bfc430963a97196ea50451e4aa3ff23c41256b0046f6efe.tmp
mv debian/.debhelper/bucket/files/4676029966e14b0a9bfc430963a97196ea50451e4aa3ff23c41256b0046f6efe.tmp debian/.debhelper/bucket/files/4676029966e14b0a9bfc430963a97196ea50451e4aa3ff23c41256b0046f6efe
cp -f /usr/share/misc/config.guess ./build-aux/config.guess
cp -an --reflink=auto build-aux/config.sub debian/.debhelper/bucket/files/4add30a10b137a5a4667e12868fb4783e385dbf865cfb7017b205321bd1a2f39.tmp
mv debian/.debhelper/bucket/files/4add30a10b137a5a4667e12868fb4783e385dbf865cfb7017b205321bd1a2f39.tmp debian/.debhelper/bucket/files/4add30a10b137a5a4667e12868fb4783e385dbf865cfb7017b205321bd1a2f39
cp -f /usr/share/misc/config.sub ./build-aux/config.sub
dh_autoreconf "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)"
find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p
" > debian/autoreconf.before
grep -q ^XDT_ configure.ac
autoreconf -f -i
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'.
libtoolize: copying file 'build-aux/ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
configure.ac:58: warning: The macro `AC_TRY_LINK' is obsolete.
configure.ac:58: You should run autoupdate.
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
m4/fftw.m4:35: SINGLE_FFTW2 is expanded from...
configure.ac:58: the top level
configure.ac:116: warning: AC_OUTPUT should be used without arguments.
configure.ac:116: You should run autoupdate.
configure.ac:10: installing 'build-aux/compile'
configure.ac:8: installing 'build-aux/missing'
clipper/Makefile.am: installing 'build-aux/depcomp'
find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p
" > debian/autoreconf.after
debian/rules override_dh_auto_configure
make[1]: Entering directory '/build/clipper-2.1.20201109'
dh_auto_configure -- --enable-mmdb --enable-minimol --enable-cif --enable-ccp4 --enable-shared --disable-static --enable-fortran
./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-mmdb --enable-minimol --enable-cif --enable-ccp4 --enable-shared --disable-static --enable-fortran
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of gcc... none
checking for g++... g++
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... unsupported
checking for g++ option to enable C++98 features... none needed
checking dependency style of g++... none
checking for ar... ar
checking the archiver (ar) interface... ar
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for file... file
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether to enable maintainer-specific portions of Makefiles... no
checking for g77... no
checking for xlf... no
checking for f77... f77
checking whether the compiler supports GNU Fortran 77... yes
checking whether f77 accepts -g... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for f77 option to produce PIC... -fPIC
checking if f77 PIC flag -fPIC works... yes
checking if f77 static flag -static works... yes
checking if f77 supports -c -o file.o... yes
checking if f77 supports -c -o file.o... (cached) yes
checking whether the f77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking how to get verbose linking output from f77... -v
checking for Fortran 77 libraries of f77... -L/usr/lib/gcc/x86_64-linux-gnu/12 -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/12/../../.. -lgfortran -lm -lquadmath
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking for library containing cos... -lm
checking for prefixed single-precision FFTW2 (sfftw.h)... yes
checking for the pthreads library -lpthreads... no
checking for the pthreads library -lpthread... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking if more special flags are required for pthreads... no
checking for PTHREAD_PRIO_INHERIT... yes
checking for MMDB_CCIF_Init in -lmmdb2... yes
checking for mmdb2/mmdb_manager.h... yes
checking for ccp4_banner in -lccp4c... yes
checking for ccp4/ccp4_general.h... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating clipper/Makefile
config.status: creating clipper/core/Makefile
config.status: creating clipper/contrib/Makefile
config.status: creating examples/Makefile
config.status: creating clipper.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
Configuration Summary
------------------------------
core: yes
contrib: yes
phs: yes
cns: yes
mmdb: yes
minimol: yes
cif: yes
ccp4: yes
cctbx: no
fortran: yes
make[1]: Leaving directory '/build/clipper-2.1.20201109'
rm -f debian/libclipper-dev.debhelper.log debian/libclipper-doc.debhelper.log debian/libclipper2.debhelper.log
debian/rules override_dh_auto_build-indep
make[1]: Entering directory '/build/clipper-2.1.20201109'
doxygen debian/Doxyfile
warning: Tag 'TCL_SUBST' at line 203 of file 'debian/Doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'SYMBOL_CACHE_SIZE' at line 336 of file 'debian/Doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'COLS_IN_ALPHA_INDEX' at line 849 of file 'debian/Doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'LATEX_SOURCE_CODE' at line 1306 of file 'debian/Doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'XML_SCHEMA' at line 1404 of file 'debian/Doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'XML_DTD' at line 1410 of file 'debian/Doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'PERL_PATH' at line 1571 of file 'debian/Doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'CLASS_DIAGRAMS' at line 1583 of file 'debian/Doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'MSCGEN_PATH' at line 1592 of file 'debian/Doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value
Using the default: a4!
warning: doxygen no longer ships with the FreeSans font.
You may want to clear or change DOT_FONTNAME.
Otherwise you run the risk that the wrong font is being used for dot generated graphs.
/build/clipper-2.1.20201109/clipper/core/cell.h:1: warning: the name 'lib/cell.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/clipper_instance.h:1: warning: the name 'lib/clipper_instance.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/clipper_memory.h:1: warning: the name 'lib/clipper_memory.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/clipper_message.h:1: warning: the name 'lib/clipper_message.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/clipper_precision.h:1: warning: the name 'lib/clipper_precision.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/clipper_stats.h:1: warning: the name 'lib/clipper_stats.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/clipper_sysdep.h:1: warning: the name 'lib/clipper_sysdep.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/clipper_test.h:1: warning: the name 'lib/clipper_test.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/clipper_thread.h:1: warning: the name 'lib/clipper_thread.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/clipper_types.h:1: warning: the name 'lib/clipper_types.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/clipper_util.h:1: warning: the name 'lib/clipper_util.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/container.h:1: warning: the name 'lib/container.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/container_hkl.h:1: warning: the name 'lib/container_hkl.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/container_map.h:1: warning: the name 'lib/container_map.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/container_types.h:1: warning: the name 'lib/container_types.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/coords.h:1: warning: the name 'lib/coords.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/derivs.h:1: warning: the name 'lib/derivs.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/fftmap.h:1: warning: the name 'lib/fftmap.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/fftmap_sparse.h:1: warning: the name 'lib/fftmap_sparse.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/hkl_compute.h:1: warning: the name 'lib/hkl_compute.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/hkl_data.h:1: warning: the name 'lib/hkl_data.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/hkl_datatypes.h:1: warning: the name 'lib/hkl_datatypes.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/hkl_info.h:1: warning: the name 'lib/hkl_info.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/hkl_lookup.h:1: warning: the name 'lib/hkl_lookup.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/hkl_operators.h:1: warning: the name 'lib/hkl_operators.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/map_interp.h:1: warning: the name 'lib/map_interp.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/map_utils.h:1: warning: the name 'lib/map_utils.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/nxmap.h:1: warning: the name 'lib/nxmap.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/nxmap_operator.h:1: warning: the name 'lib/nxmap_operator.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/resol_basisfn.h:1: warning: the name 'lib/resol_basisfn.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/resol_fn.h:1: warning: the name 'lib/resol_fn.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/resol_targetfn.h:1: warning: the name 'lib/resol_targetfn.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/rotation.h:1: warning: the name 'lib/rotation.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/spacegroup.h:1: warning: the name 'lib/spacegroup.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/symop.h:1: warning: the name 'lib/symop.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/test_core.h:1: warning: the name 'lib/test_core.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/test_data.h:1: warning: the name 'lib/test_data.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/xmap.h:1: warning: the name 'lib/xmap.h' supplied as the argument in the \file statement is not an input file
/build/clipper-2.1.20201109/clipper/core/clipper_util.cpp:165: warning: no matching class member found for
template void clipper::Util::swap< ftype32 >(float &a, ftype32 &b)
Possible candidates:
'template < T >
static void clipper::Util::swap(T &a, T &b)' at line 150 of file /build/clipper-2.1.20201109/clipper/core/clipper_util.h
'template < T >
static void clipper::Util::swap(T &a, T &b, T &c)' at line 153 of file /build/clipper-2.1.20201109/clipper/core/clipper_util.h
/build/clipper-2.1.20201109/clipper/core/clipper_util.cpp:166: warning: no matching class member found for
template void clipper::Util::swap< ftype32 >(float &a, ftype32 &b, ftype32 &c)
Possible candidates:
'template < T >
static void clipper::Util::swap(T &a, T &b)' at line 150 of file /build/clipper-2.1.20201109/clipper/core/clipper_util.h
'template < T >
static void clipper::Util::swap(T &a, T &b, T &c)' at line 153 of file /build/clipper-2.1.20201109/clipper/core/clipper_util.h
/build/clipper-2.1.20201109/clipper/core/clipper_util.cpp:173: warning: no matching class member found for
template void clipper::Util::swap< ftype64 >(double &a, ftype64 &b)
Possible candidates:
'template < T >
static void clipper::Util::swap(T &a, T &b)' at line 150 of file /build/clipper-2.1.20201109/clipper/core/clipper_util.h
'template < T >
static void clipper::Util::swap(T &a, T &b, T &c)' at line 153 of file /build/clipper-2.1.20201109/clipper/core/clipper_util.h
/build/clipper-2.1.20201109/clipper/core/clipper_util.cpp:174: warning: no matching class member found for
template void clipper::Util::swap< ftype64 >(double &a, ftype64 &b, ftype64 &c)
Possible candidates:
'template < T >
static void clipper::Util::swap(T &a, T &b)' at line 150 of file /build/clipper-2.1.20201109/clipper/core/clipper_util.h
'template < T >
static void clipper::Util::swap(T &a, T &b, T &c)' at line 153 of file /build/clipper-2.1.20201109/clipper/core/clipper_util.h
/build/clipper-2.1.20201109/clipper/core/clipper_util.cpp:181: warning: no matching class member found for
template void clipper::Util::swap< int >(int &a, int &b)
Possible candidates:
'template < T >
static void clipper::Util::swap(T &a, T &b)' at line 150 of file /build/clipper-2.1.20201109/clipper/core/clipper_util.h
'template < T >
static void clipper::Util::swap(T &a, T &b, T &c)' at line 153 of file /build/clipper-2.1.20201109/clipper/core/clipper_util.h
/build/clipper-2.1.20201109/clipper/core/clipper_util.cpp:182: warning: no matching class member found for
template void clipper::Util::swap< int >(int &a, int &b, int &c)
Possible candidates:
'template < T >
static void clipper::Util::swap(T &a, T &b)' at line 150 of file /build/clipper-2.1.20201109/clipper/core/clipper_util.h
'template < T >
static void clipper::Util::swap(T &a, T &b, T &c)' at line 153 of file /build/clipper-2.1.20201109/clipper/core/clipper_util.h
/build/clipper-2.1.20201109/clipper/core/fftmap.cpp:425: warning: no matching class member found for
template void clipper::FFTmap::get_recip_data< ftype32 >(const clipper::HKL &rfl, clipper::datatypes::F_phi< float > &fphi) const
Possible candidates:
'template < T >
void clipper::FFTmap::get_recip_data(const HKL &rfl, datatypes::F_phi< T > &fphi) const' at line 189 of file /build/clipper-2.1.20201109/clipper/core/fftmap.h
'datatypes::F_phi< ffttype > clipper::FFTmap::get_recip_data(const HKL &rfl) const' at line 199 of file /build/clipper-2.1.20201109/clipper/core/fftmap.h
/build/clipper-2.1.20201109/clipper/core/fftmap.cpp:427: warning: no matching class member found for
template void clipper::FFTmap::get_real_data< ftype32 >(const clipper::Coord_grid &c, float &datum) const
Possible candidates:
'template < T >
void clipper::FFTmap::get_real_data(const Coord_grid &c, T &datum) const' at line 194 of file /build/clipper-2.1.20201109/clipper/core/fftmap.h
'const ffttype & clipper::FFTmap::get_real_data(const Coord_grid &c) const' at line 201 of file /build/clipper-2.1.20201109/clipper/core/fftmap.h
/build/clipper-2.1.20201109/clipper/core/fftmap.cpp:429: warning: no matching class member found for
template void clipper::FFTmap::get_recip_data< ftype64 >(const clipper::HKL &rfl, clipper::datatypes::F_phi< double > &fphi) const
Possible candidates:
'template < T >
void clipper::FFTmap::get_recip_data(const HKL &rfl, datatypes::F_phi< T > &fphi) const' at line 189 of file /build/clipper-2.1.20201109/clipper/core/fftmap.h
'datatypes::F_phi< ffttype > clipper::FFTmap::get_recip_data(const HKL &rfl) const' at line 199 of file /build/clipper-2.1.20201109/clipper/core/fftmap.h
/build/clipper-2.1.20201109/clipper/core/fftmap.cpp:431: warning: no matching class member found for
template void clipper::FFTmap::get_real_data< ftype64 >(const clipper::Coord_grid &c, double &datum) const
Possible candidates:
'template < T >
void clipper::FFTmap::get_real_data(const Coord_grid &c, T &datum) const' at line 194 of file /build/clipper-2.1.20201109/clipper/core/fftmap.h
'const ffttype & clipper::FFTmap::get_real_data(const Coord_grid &c) const' at line 201 of file /build/clipper-2.1.20201109/clipper/core/fftmap.h
/build/clipper-2.1.20201109/dox/clipper_contrib.dox:1: warning: found more than one \mainpage comment block! (first occurrence: /build/clipper-2.1.20201109/dox/clipper.dox, line 1), Skipping current block!
/build/clipper-2.1.20201109/dox/clipper_minimol.dox:1: warning: found more than one \mainpage comment block! (first occurrence: /build/clipper-2.1.20201109/dox/clipper.dox, line 1), Skipping current block!
/build/clipper-2.1.20201109/dox/clipper_mmdb.dox:1: warning: found more than one \mainpage comment block! (first occurrence: /build/clipper-2.1.20201109/dox/clipper.dox, line 1), Skipping current block!
/build/clipper-2.1.20201109/dox/clipper_mmdbold.dox:1: warning: found more than one \mainpage comment block! (first occurrence: /build/clipper-2.1.20201109/dox/clipper.dox, line 1), Skipping current block!
sh: 1: latex: not found
error: Problems running latex. Check your installation or look for typos in _formulas.tex and check _formulas.log!
/build/clipper-2.1.20201109/dox/develop.dox:167: warning: Illegal command \width found as part of a image
/build/clipper-2.1.20201109/dox/installation.dox:18: warning: included file install.csh is not found. Check your EXAMPLE_PATH
/build/clipper-2.1.20201109/clipper/core/atomsf.cpp:543: warning: argument 'The' of command @param is not found in the argument list of clipper::AtomShapeFn::rho(const Coord_orth &xyz) const
/build/clipper-2.1.20201109/clipper/core/atomsf.cpp:588: warning: Found unknown command '\patam'
/build/clipper-2.1.20201109/clipper/core/atomsf.cpp:583: warning: The following parameter of clipper::AtomShapeFn::rho_grad(const Coord_orth &xyz, ftype &rho, std::vector< ftype > &grad) const is not documented:
parameter 'rho'
/build/clipper-2.1.20201109/clipper/core/atomsf.cpp:670: warning: Found unknown command '\patam'
/build/clipper-2.1.20201109/clipper/core/atomsf.cpp:665: warning: The following parameter of clipper::AtomShapeFn::rho_curv(const Coord_orth &xyz, ftype &rho, std::vector< ftype > &grad, Matrix< ftype > &curv) const is not documented:
parameter 'rho'
/build/clipper-2.1.20201109/clipper/core/atomsf.cpp:572: warning: argument 'invresolsq' of command @param is not found in the argument list of clipper::AtomShapeFn::rho(const ftype &rsq) const
/build/clipper-2.1.20201109/clipper/core/atomsf.cpp:572: warning: argument 'The' of command @param is not found in the argument list of clipper::AtomShapeFn::rho(const ftype &rsq) const
/build/clipper-2.1.20201109/clipper/core/atomsf.cpp:572: warning: The following parameter of clipper::AtomShapeFn::rho(const ftype &rsq) const is not documented:
parameter 'rsq'
/build/clipper-2.1.20201109/clipper/core/container_types.cpp:104: warning: argument 'rate_' of command @param is not found in the argument list of clipper::CGrid_sampling::init(const Spacegroup &spacegroup, const Cell &cell, const Resolution &resolution, const ftype rate)
/build/clipper-2.1.20201109/clipper/core/container_types.cpp:104: warning: The following parameter of clipper::CGrid_sampling::init(const Spacegroup &spacegroup, const Cell &cell, const Resolution &resolution, const ftype rate) is not documented:
parameter 'rate'
/build/clipper-2.1.20201109/clipper/core/container_hkl.cpp:51: warning: The following parameter of clipper::CHKL_info::CHKL_info(const String name="", const Spacegroup &spacegroup=NullSpacegroup, const Cell &cell=NullCell, const Resolution &resolution=NullResolution, const bool &generate=false) is not documented:
parameter 'name'
/build/clipper-2.1.20201109/clipper/core/container_hkl.cpp:59: warning: The following parameter of clipper::CHKL_info::CHKL_info(Container &parent, const String name="", const bool &generate=false) is not documented:
parameter 'generate'
/build/clipper-2.1.20201109/clipper/core/container_map.h:180: warning: argument 'grid' of command @param is not found in the argument list of clipper::CNXmap_operator< T >::init(const Cell &cell, const Grid_sampling &grid_sampling, const NXmap< T > &nxmap, const RTop_orth &nxop)
/build/clipper-2.1.20201109/clipper/core/container_map.h:180: warning: The following parameter of clipper::CNXmap_operator::init(const Cell &cell, const Grid_sampling &grid_sampling, const NXmap< T > &nxmap, const RTop_orth &nxop) is not documented:
parameter 'grid_sampling'
/build/clipper-2.1.20201109/clipper/core/coords.h:736: warning: The following parameter of clipper::Coord_grid::deindex(const Grid &g, const int &index) is not documented:
parameter 'index'
/build/clipper-2.1.20201109/clipper/core/coords.h:736: warning: found documented return type for clipper::Coord_grid::deindex that does not return anything
/build/clipper-2.1.20201109/clipper/core/container_map.h:126: warning: argument 'name' of command @param is not found in the argument list of clipper::CXmap< T >::init(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling &grid_sampling)
/build/clipper-2.1.20201109/clipper/core/container_map.h:126: warning: argument 'grid' of command @param is not found in the argument list of clipper::CXmap< T >::init(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling &grid_sampling)
/build/clipper-2.1.20201109/clipper/core/container_map.h:126: warning: The following parameters of clipper::CXmap::init(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling &grid_sampling) are not documented:
parameter 'cell'
parameter 'grid_sampling'
/build/clipper-2.1.20201109/clipper/core/fftmap.cpp:280: warning: argument 'precalc' of command @param is not found in the argument list of clipper::FFTmap::FFTmap(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling grid_sam, const FFTtype type=Default)
/build/clipper-2.1.20201109/clipper/core/fftmap.cpp:280: warning: The following parameter of clipper::FFTmap::FFTmap(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling grid_sam, const FFTtype type=Default) is not documented:
parameter 'type'
/build/clipper-2.1.20201109/clipper/core/fftmap.cpp:296: warning: argument 'precalc' of command @param is not found in the argument list of clipper::FFTmap::init(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling grid_sam, const FFTtype type=Default)
/build/clipper-2.1.20201109/clipper/core/fftmap.cpp:296: warning: The following parameter of clipper::FFTmap::init(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling grid_sam, const FFTtype type=Default) is not documented:
parameter 'type'
/build/clipper-2.1.20201109/clipper/core/fftmap.cpp:145: warning: argument 'Scale' of command @param is not found in the argument list of clipper::FFTmap_p1::fft_h_to_x(const ftype &scale)
/build/clipper-2.1.20201109/clipper/core/fftmap.cpp:145: warning: The following parameter of clipper::FFTmap_p1::fft_h_to_x(const ftype &scale) is not documented:
parameter 'scale'
/build/clipper-2.1.20201109/clipper/core/fftmap.cpp:177: warning: argument 'Scale' of command @param is not found in the argument list of clipper::FFTmap_p1::fft_x_to_h(const ftype &scale)
/build/clipper-2.1.20201109/clipper/core/fftmap.cpp:177: warning: The following parameter of clipper::FFTmap_p1::fft_x_to_h(const ftype &scale) is not documented:
parameter 'scale'
/build/clipper-2.1.20201109/clipper/core/fftmap.cpp:225: warning: The following parameter of clipper::FFTmap_p1::set_hkl(const HKL &hkl, const std::complex< ffttype > &f) is not documented:
parameter 'f'
/build/clipper-2.1.20201109/clipper/core/fftmap_sparse.cpp:66: warning: explicit link request to 'Estimate' could not be resolved
/build/clipper-2.1.20201109/clipper/core/fftmap_sparse.cpp:125: warning: explicit link request to 'Estimate' could not be resolved
/build/clipper-2.1.20201109/clipper/core/fftmap_sparse.cpp:248: warning: explicit link request to 'Estimate' could not be resolved
/build/clipper-2.1.20201109/clipper/core/fftmap_sparse.cpp:279: warning: argument 'uvw' of command @param is not found in the argument list of clipper::FFTmap_sparse_p1_xh::require_cplx_data(const Coord_grid &hkl)
/build/clipper-2.1.20201109/clipper/core/fftmap_sparse.cpp:279: warning: The following parameter of clipper::FFTmap_sparse_p1_xh::require_cplx_data(const Coord_grid &hkl) is not documented:
parameter 'hkl'
/build/clipper-2.1.20201109/clipper/core/fftmap_sparse.cpp:284: warning: argument 'uvw' of command @param is not found in the argument list of clipper::FFTmap_sparse_p1_xh::cplx_data(const Coord_grid &hkl) const
/build/clipper-2.1.20201109/clipper/core/fftmap_sparse.cpp:284: warning: The following parameter of clipper::FFTmap_sparse_p1_xh::cplx_data(const Coord_grid &hkl) const is not documented:
parameter 'hkl'
/build/clipper-2.1.20201109/clipper/core/coords.h:703: warning: argument 'hkl' of command @param is not found in the argument list of clipper::HKL::sym_phase_shift(const Symop &op) const
/build/clipper-2.1.20201109/clipper/core/coords.h:703: warning: The following parameter of clipper::HKL::sym_phase_shift(const Symop &op) const is not documented:
parameter 'op'
/build/clipper-2.1.20201109/clipper/core/hkl_data.h:510: warning: argument 'data' of command @param is not found in the argument list of clipper::HKL_data< T >::set_data(const HKL &hkl, const T &data_)
/build/clipper-2.1.20201109/clipper/core/hkl_data.h:510: warning: The following parameter of clipper::HKL_data::set_data(const HKL &hkl, const T &data_) is not documented:
parameter 'data_'
/build/clipper-2.1.20201109/clipper/core/hkl_info.cpp:80: warning: The following parameter of clipper::HKL_info::HKL_info(const Spacegroup &spacegroup, const Cell &cell, const Resolution &resolution, const bool &generate=false) is not documented:
parameter 'generate'
/build/clipper-2.1.20201109/clipper/core/map_interp.h:208: warning: The following parameters of clipper::Interp_cubic::interp(const M &map, const Coord_map &pos, T &val) are not documented:
parameter 'map'
parameter 'val'
/build/clipper-2.1.20201109/clipper/core/map_interp.h:208: warning: found documented return type for clipper::Interp_cubic::interp that does not return anything
/build/clipper-2.1.20201109/clipper/core/map_interp.h:260: warning: The following parameter of clipper::Interp_cubic::interp_grad(const M &map, const Coord_map &pos, T &val, Grad_map< T > &grad) is not documented:
parameter 'map'
/build/clipper-2.1.20201109/clipper/core/map_interp.h:340: warning: The following parameters of clipper::Interp_cubic::interp_curv(const M &map, const Coord_map &pos, T &val, Grad_map< T > &grad, Curv_map< T > &curv) are not documented:
parameter 'map'
parameter 'curv'
/build/clipper-2.1.20201109/clipper/core/map_interp.h:159: warning: The following parameter of clipper::Interp_linear::interp(const M &map, const Coord_map &pos, T &val) is not documented:
parameter 'val'
/build/clipper-2.1.20201109/clipper/core/map_interp.h:159: warning: found documented return type for clipper::Interp_linear::interp that does not return anything
/build/clipper-2.1.20201109/clipper/core/map_interp.h:131: warning: The following parameter of clipper::Interp_nearest::interp(const M &map, const Coord_map &pos, T &val) is not documented:
parameter 'val'
/build/clipper-2.1.20201109/clipper/core/map_interp.h:131: warning: found documented return type for clipper::Interp_nearest::interp that does not return anything
/build/clipper-2.1.20201109/clipper/core/map_utils.cpp:55: warning: Found unknown command '\params'
/build/clipper-2.1.20201109/clipper/core/map_utils.cpp:56: warning: Found unknown command '\params'
/build/clipper-2.1.20201109/clipper/core/map_utils.cpp:64: warning: Found unknown command '\params'
/build/clipper-2.1.20201109/clipper/core/map_utils.cpp:65: warning: Found unknown command '\params'
/build/clipper-2.1.20201109/clipper/core/map_utils.h:113: warning: Found unknown command '\params'
/build/clipper-2.1.20201109/clipper/core/nxmap.h:384: warning: argument 'curv' of command @param is not found in the argument list of clipper::NXmap< T >::interp_grad(const Coord_map &pos, T &val, Grad_map< T > &grad) const
/build/clipper-2.1.20201109/clipper/core/resol_fn.cpp:141: warning: argument 'damp_' of command @param is not found in the argument list of clipper::ResolutionFn::ResolutionFn(const HKL_info &hkl_info, const BasisFn_base &basisfn, const TargetFn_base &targetfn, const std::vector< ftype > ¶ms, const ftype damp=0.0, const bool debug=false)
/build/clipper-2.1.20201109/clipper/core/resol_fn.cpp:141: warning: The following parameters of clipper::ResolutionFn::ResolutionFn(const HKL_info &hkl_info, const BasisFn_base &basisfn, const TargetFn_base &targetfn, const std::vector< ftype > ¶ms, const ftype damp=0.0, const bool debug=false) are not documented:
parameter 'damp'
parameter 'debug'
/build/clipper-2.1.20201109/clipper/core/resol_fn.cpp:200: warning: argument 'damp_' of command @param is not found in the argument list of clipper::ResolutionFn_nonlinear::ResolutionFn_nonlinear(const HKL_info &hkl_info, const BasisFn_base &basisfn, const TargetFn_base &targetfn, const std::vector< ftype > ¶ms, const ftype damp=0.0, const bool debug=false)
/build/clipper-2.1.20201109/clipper/core/resol_fn.cpp:200: warning: The following parameters of clipper::ResolutionFn_nonlinear::ResolutionFn_nonlinear(const HKL_info &hkl_info, const BasisFn_base &basisfn, const TargetFn_base &targetfn, const std::vector< ftype > ¶ms, const ftype damp=0.0, const bool debug=false) are not documented:
parameter 'params'
parameter 'damp'
parameter 'debug'
/build/clipper-2.1.20201109/clipper/core/spacegroup.cpp:462: warning: argument 'name' of command @param is not found in the argument list of clipper::Spgr_descr::Spgr_descr(const String &symb, TYPE type=Unknown)
/build/clipper-2.1.20201109/clipper/core/spacegroup.cpp:462: warning: The following parameter of clipper::Spgr_descr::Spgr_descr(const String &symb, TYPE type=Unknown) is not documented:
parameter 'symb'
/build/clipper-2.1.20201109/clipper/core/symop.cpp:118: warning: argument 'mat' of command @param is not found in the argument list of clipper::Symop::Symop(const RTop<> &rt)
/build/clipper-2.1.20201109/clipper/core/symop.cpp:118: warning: The following parameter of clipper::Symop::Symop(const RTop<> &rt) is not documented:
parameter 'rt'
/build/clipper-2.1.20201109/clipper/core/resol_targetfn.h:86: warning: Found unknown command '\Note'
/build/clipper-2.1.20201109/clipper/core/resol_targetfn.h:62: warning: Found unknown command '\Note'
/build/clipper-2.1.20201109/clipper/core/coords.cpp:626: warning: argument 'u' of command @param is not found in the argument list of clipper::U_aniso_frac::transform(const RTop_frac &op) const
/build/clipper-2.1.20201109/clipper/core/coords.cpp:626: warning: The following parameter of clipper::U_aniso_frac::transform(const RTop_frac &op) const is not documented:
parameter 'op'
/build/clipper-2.1.20201109/clipper/core/coords.cpp:614: warning: argument 'u' of command @param is not found in the argument list of clipper::U_aniso_orth::transform(const RTop_orth &op) const
/build/clipper-2.1.20201109/clipper/core/coords.cpp:614: warning: The following parameter of clipper::U_aniso_orth::transform(const RTop_orth &op) const is not documented:
parameter 'op'
/build/clipper-2.1.20201109/clipper/core/xmap.h:600: warning: The following parameter of clipper::Xmap::fft_from(const H &fphidata, const FFTtype type=Default) is not documented:
parameter 'type'
/build/clipper-2.1.20201109/clipper/core/xmap.h:665: warning: The following parameter of clipper::Xmap::fft_to(H &fphidata, const FFTtype type=Default) const is not documented:
parameter 'type'
make[1]: Leaving directory '/build/clipper-2.1.20201109'
dh_auto_build "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" -Nlibclipper-doc
make -j16
make[1]: Entering directory '/build/clipper-2.1.20201109'
make all-recursive
make[2]: Entering directory '/build/clipper-2.1.20201109'
Making all in clipper
make[3]: Entering directory '/build/clipper-2.1.20201109/clipper'
Making all in core
make[4]: Entering directory '/build/clipper-2.1.20201109/clipper/core'
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-atomsf.lo `test -f 'atomsf.cpp' || echo './'`atomsf.cpp
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-coords.lo `test -f 'coords.cpp' || echo './'`coords.cpp
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-nxmap_operator.lo `test -f 'nxmap_operator.cpp' || echo './'`nxmap_operator.cpp
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-cell.lo `test -f 'cell.cpp' || echo './'`cell.cpp
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-derivs.lo `test -f 'derivs.cpp' || echo './'`derivs.cpp
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-ramachandran.lo `test -f 'ramachandran.cpp' || echo './'`ramachandran.cpp
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_instance.lo `test -f 'clipper_instance.cpp' || echo './'`clipper_instance.cpp
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-fftmap.lo `test -f 'fftmap.cpp' || echo './'`fftmap.cpp
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-resol_basisfn.lo `test -f 'resol_basisfn.cpp' || echo './'`resol_basisfn.cpp
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_memory.lo `test -f 'clipper_memory.cpp' || echo './'`clipper_memory.cpp
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-fftmap_sparse.lo `test -f 'fftmap_sparse.cpp' || echo './'`fftmap_sparse.cpp
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-resol_fn.lo `test -f 'resol_fn.cpp' || echo './'`resol_fn.cpp
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_message.lo `test -f 'clipper_message.cpp' || echo './'`clipper_message.cpp
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_compute.lo `test -f 'hkl_compute.cpp' || echo './'`hkl_compute.cpp
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-resol_targetfn.lo `test -f 'resol_targetfn.cpp' || echo './'`resol_targetfn.cpp
/bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_stats.lo `test -f 'clipper_stats.cpp' || echo './'`clipper_stats.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c atomsf.cpp -fPIC -DPIC -o .libs/libclipper_core_la-atomsf.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c nxmap_operator.cpp -fPIC -DPIC -o .libs/libclipper_core_la-nxmap_operator.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c coords.cpp -fPIC -DPIC -o .libs/libclipper_core_la-coords.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c cell.cpp -fPIC -DPIC -o .libs/libclipper_core_la-cell.o
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atomsf.cpp: In member function 'const clipper::ScatteringFactorsData& clipper::ScatteringFactors::operator[](const clipper::String&) const':
atomsf.cpp:438:82: warning: control reaches end of non-void function [-Wreturn-type]
438 | default: Message::message(Message_fatal("unimplemented type"));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
atomsf.cpp: In static member function 'static const clipper::ScatteringFactorsData& clipper::ScatteringFactorsTraits<TYPE>::sf(const clipper::String&, int) [with clipper::ScatteringFactorsType TYPE = clipper::SF_WAASMAIER_KIRFEL]':
atomsf.cpp:406:1: warning: control reaches end of non-void function [-Wreturn-type]
406 | }
| ^
atomsf.cpp: In static member function 'static const clipper::ScatteringFactorsData& clipper::ScatteringFactorsTraits<TYPE>::sf(const clipper::String&, int) [with clipper::ScatteringFactorsType TYPE = clipper::SF_ELECTRON]':
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c phs/phs_io.cpp -fPIC -DPIC -o phs/.libs/phs_io.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c minimol/minimol_seq.cpp -fPIC -DPIC -o minimol/.libs/minimol_seq.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c minimol/minimol_io.cpp -fPIC -DPIC -o minimol/.libs/minimol_io.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c minimol/minimol_data.cpp -fPIC -DPIC -o minimol/.libs/minimol_data.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c minimol/container_minimol.cpp -fPIC -DPIC -o minimol/.libs/container_minimol.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c minimol/minimol_utils.cpp -fPIC -DPIC -o minimol/.libs/minimol_utils.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c ccp4/ccp4_mtz_types.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_mtz_types.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c ccp4/ccp4_mtz_io.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_mtz_io.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c ccp4/ccp4_utils.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_utils.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c cns/cns_map_io.cpp -fPIC -DPIC -o cns/.libs/cns_map_io.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c cif/cif_data_io.cpp -fPIC -DPIC -o cif/.libs/cif_data_io.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c ccp4/ccp4_map_io.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_map_io.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c cns/cns_hkl_io.cpp -fPIC -DPIC -o cns/.libs/cns_hkl_io.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c fortran/f_interface.cpp -fPIC -DPIC -o fortran/.libs/f_interface.o
cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = unsigned char]':
cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
202 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
205 | fgets(buf,512,f);; // could be blank line first
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
209 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
212 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
223 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
235 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
243 | fgets(buf,512,f);; // read slice number line
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
252 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = char]':
cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
202 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
205 | fgets(buf,512,f);; // could be blank line first
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
209 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
212 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
223 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
235 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
243 | fgets(buf,512,f);; // read slice number line
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
252 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = short unsigned int]':
cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
202 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
205 | fgets(buf,512,f);; // could be blank line first
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
209 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
212 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
223 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
235 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
243 | fgets(buf,512,f);; // read slice number line
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
252 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = short int]':
cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
202 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
205 | fgets(buf,512,f);; // could be blank line first
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
209 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
212 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
223 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
235 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
243 | fgets(buf,512,f);; // read slice number line
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
252 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = unsigned int]':
cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
202 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
205 | fgets(buf,512,f);; // could be blank line first
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
209 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
212 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
223 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
235 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
243 | fgets(buf,512,f);; // read slice number line
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
252 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = int]':
cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
202 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
205 | fgets(buf,512,f);; // could be blank line first
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
209 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
212 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
223 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
235 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
243 | fgets(buf,512,f);; // read slice number line
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
252 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = float]':
cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
202 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
205 | fgets(buf,512,f);; // could be blank line first
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
209 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
212 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
223 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
235 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
243 | fgets(buf,512,f);; // read slice number line
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
252 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = double]':
cns/cns_map_io.cpp:202:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
202 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:205:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
205 | fgets(buf,512,f);; // could be blank line first
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:209:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
209 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:212:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
212 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
223 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
235 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:243:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
243 | fgets(buf,512,f);; // read slice number line
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:252:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
252 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = unsigned char]':
cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
331 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
334 | fgets(buf,512,f);; // could be blank line first
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
338 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
341 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
352 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
364 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
372 | fgets(buf,512,f);; // read slice number line
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
381 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = char]':
cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
331 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
334 | fgets(buf,512,f);; // could be blank line first
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
338 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
341 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
352 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
364 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
372 | fgets(buf,512,f);; // read slice number line
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
381 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = short unsigned int]':
cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
331 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
334 | fgets(buf,512,f);; // could be blank line first
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
338 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
341 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
352 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
364 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
372 | fgets(buf,512,f);; // read slice number line
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
381 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = short int]':
cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
331 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
334 | fgets(buf,512,f);; // could be blank line first
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
338 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
341 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
352 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
364 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
372 | fgets(buf,512,f);; // read slice number line
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
381 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = unsigned int]':
cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
331 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
334 | fgets(buf,512,f);; // could be blank line first
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
338 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
341 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
352 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
364 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
372 | fgets(buf,512,f);; // read slice number line
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
381 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = int]':
cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
331 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
334 | fgets(buf,512,f);; // could be blank line first
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
338 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
341 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
352 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
364 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
372 | fgets(buf,512,f);; // read slice number line
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
381 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = float]':
cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
331 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
334 | fgets(buf,512,f);; // could be blank line first
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
338 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
341 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
352 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
364 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
372 | fgets(buf,512,f);; // read slice number line
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
381 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = double]':
cns/cns_map_io.cpp:331:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
331 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
334 | fgets(buf,512,f);; // could be blank line first
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
338 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:341:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
341 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:352:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
352 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:364:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
364 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:372:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
372 | fgets(buf,512,f);; // read slice number line
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:381:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
381 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp: In member function 'clipper::CNSMAPfile::ASUerror clipper::CNSMAPfile::import_xmap_check_asu(clipper::Xmap<T>&, T) [with T = float]':
cns/cns_map_io.cpp:497:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
497 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:500:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
500 | fgets(buf,512,f);; // could be blank line first
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:504:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
504 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:507:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
507 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:518:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
518 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:536:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
536 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:544:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
544 | fgets(buf,512,f);; // read slice number line
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:553:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
553 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp: In member function 'clipper::CNSMAPfile::ASUerror clipper::CNSMAPfile::import_xmap_check_asu(clipper::Xmap<T>&, T) [with T = double]':
cns/cns_map_io.cpp:497:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
497 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:500:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
500 | fgets(buf,512,f);; // could be blank line first
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:504:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
504 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:507:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
507 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:518:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
518 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:536:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
536 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:544:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
544 | fgets(buf,512,f);; // read slice number line
| ~~~~~^~~~~~~~~~~
cns/cns_map_io.cpp:553:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
553 | fgets(buf,512,f);;
| ~~~~~^~~~~~~~~~~
/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o phs/libclipper-phs.la -rpath /usr/lib/x86_64-linux-gnu phs/phs_io.lo core/libclipper-core.la -lm
/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o mmdb/libclipper-mmdb.la -rpath /usr/lib/x86_64-linux-gnu mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb2 -lm
/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o fortran/libclipper-fortran.la -rpath /usr/lib/x86_64-linux-gnu fortran/f_interface.lo core/libclipper-core.la contrib/libclipper-contrib.la -lm
libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/12/crtbeginS.o phs/.libs/phs_io.o -Wl,-rpath -Wl,/build/clipper-2.1.20201109/clipper/core/.libs core/.libs/libclipper-core.so -L/usr/lib/gcc/x86_64-linux-gnu/12 -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/12/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-phs.so.2 -o phs/.libs/libclipper-phs.so.2.0.1
libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/12/crtbeginS.o mmdb/.libs/clipper_mmdb.o -Wl,-rpath -Wl,/build/clipper-2.1.20201109/clipper/core/.libs core/.libs/libclipper-core.so -lmmdb2 -L/usr/lib/gcc/x86_64-linux-gnu/12 -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/12/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-mmdb.so.2 -o mmdb/.libs/libclipper-mmdb.so.2.0.1
libtool: link: (cd "phs/.libs" && rm -f "libclipper-phs.so.2" && ln -s "libclipper-phs.so.2.0.1" "libclipper-phs.so.2")
libtool: link: (cd "phs/.libs" && rm -f "libclipper-phs.so" && ln -s "libclipper-phs.so.2.0.1" "libclipper-phs.so")
libtool: link: ( cd "phs/.libs" && rm -f "libclipper-phs.la" && ln -s "../libclipper-phs.la" "libclipper-phs.la" )
libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/12/crtbeginS.o fortran/.libs/f_interface.o -Wl,-rpath -Wl,/build/clipper-2.1.20201109/clipper/core/.libs -Wl,-rpath -Wl,/build/clipper-2.1.20201109/clipper/contrib/.libs core/.libs/libclipper-core.so contrib/.libs/libclipper-contrib.so -L/usr/lib/gcc/x86_64-linux-gnu/12 -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/12/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-fortran.so.2 -o fortran/.libs/libclipper-fortran.so.2.0.1
libtool: link: (cd "fortran/.libs" && rm -f "libclipper-fortran.so.2" && ln -s "libclipper-fortran.so.2.0.1" "libclipper-fortran.so.2")
libtool: link: (cd "mmdb/.libs" && rm -f "libclipper-mmdb.so.2" && ln -s "libclipper-mmdb.so.2.0.1" "libclipper-mmdb.so.2")
libtool: link: (cd "fortran/.libs" && rm -f "libclipper-fortran.so" && ln -s "libclipper-fortran.so.2.0.1" "libclipper-fortran.so")
libtool: link: (cd "mmdb/.libs" && rm -f "libclipper-mmdb.so" && ln -s "libclipper-mmdb.so.2.0.1" "libclipper-mmdb.so")
libtool: link: ( cd "fortran/.libs" && rm -f "libclipper-fortran.la" && ln -s "../libclipper-fortran.la" "libclipper-fortran.la" )
libtool: link: ( cd "mmdb/.libs" && rm -f "libclipper-mmdb.la" && ln -s "../libclipper-mmdb.la" "libclipper-mmdb.la" )
/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o cif/libclipper-cif.la -rpath /usr/lib/x86_64-linux-gnu cif/cif_data_io.lo core/libclipper-core.la -lmmdb2 -lm
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libtool: link: (cd "cif/.libs" && rm -f "libclipper-cif.so.2" && ln -s "libclipper-cif.so.2.0.1" "libclipper-cif.so.2")
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libtool: link: ( cd "cif/.libs" && rm -f "libclipper-cif.la" && ln -s "../libclipper-cif.la" "libclipper-cif.la" )
/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o minimol/libclipper-minimol.la -rpath /usr/lib/x86_64-linux-gnu minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb2 -lm
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/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o cns/libclipper-cns.la -rpath /usr/lib/x86_64-linux-gnu cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm
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libtool: link: (cd "cns/.libs" && rm -f "libclipper-cns.so.2" && ln -s "libclipper-cns.so.2.0.1" "libclipper-cns.so.2")
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libtool: link: ( cd "cns/.libs" && rm -f "libclipper-cns.la" && ln -s "../libclipper-cns.la" "libclipper-cns.la" )
/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o ccp4/libclipper-ccp4.la -rpath /usr/lib/x86_64-linux-gnu ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm
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libtool: link: (cd "ccp4/.libs" && rm -f "libclipper-ccp4.so.2" && ln -s "libclipper-ccp4.so.2.0.1" "libclipper-ccp4.so.2")
libtool: link: (cd "ccp4/.libs" && rm -f "libclipper-ccp4.so" && ln -s "libclipper-ccp4.so.2.0.1" "libclipper-ccp4.so")
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Making all in examples
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dh_auto_test "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)"
make -j16 check "TESTSUITEFLAGS=-j16 --verbose" VERBOSE=1
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make rfltest sgtest symtest ccad diffmap maptest mtztest cmaplocal ffttest sktest cnstest cns2mtz maketestdata sftest phstest ciftophs ftndemo
make[3]: Entering directory '/build/clipper-2.1.20201109/examples'
g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o rfltest.o rfltest.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o sgtest.o sgtest.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o symtest.o symtest.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o ccad.o ccad.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o diffmap.o diffmap.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o maptest.o maptest.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o mtztest.o mtztest.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o cmaplocal.o cmaplocal.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o ffttest.o ffttest.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o sktest.o sktest.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o cnstest.o cnstest.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o cns2mtz.o cns2mtz.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o maketestdata.o maketestdata.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o sftest.o sftest.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o phstest.o phstest.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o ciftophs.o ciftophs.cpp
f77 -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -c -o ftndemo.o ftndemo.f
/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o cmaplocal cmaplocal.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2
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/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o ftndemo ftndemo.o ../clipper/fortran/libclipper-fortran.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/gcc/x86_64-linux-gnu/12 -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/12/../../.. -lgfortran -lm -lquadmath -L/usr/lib/x86_64-linux-gnu -lmmdb2
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/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o phstest phstest.o ../clipper/phs/libclipper-phs.la ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2
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/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o diffmap diffmap.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2
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/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o cnstest cnstest.o ../clipper/cns/libclipper-cns.la ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -o .libs/diffmap diffmap.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2
/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o maketestdata maketestdata.o ../clipper/mmdb/libclipper-mmdb.la ../clipper/ccp4/libclipper-ccp4.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -o .libs/phstest phstest.o ../clipper/phs/.libs/libclipper-phs.so ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -o .libs/cnstest cnstest.o ../clipper/cns/.libs/libclipper-cns.so ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -o .libs/maketestdata maketestdata.o ../clipper/mmdb/.libs/libclipper-mmdb.so ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2
/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o symtest symtest.o ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -o .libs/symtest symtest.o ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2
/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o ffttest ffttest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2
/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o sktest sktest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2
/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o rfltest rfltest.o ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -o .libs/ffttest ffttest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2
/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o ccad ccad.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -o .libs/sktest sktest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -o .libs/rfltest rfltest.o ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2
/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o mtztest mtztest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -o .libs/ccad ccad.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2
/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o sftest sftest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/mmdb/libclipper-mmdb.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -o .libs/mtztest mtztest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -o .libs/sftest sftest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/mmdb/.libs/libclipper-mmdb.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2
/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z,relro -o cns2mtz cns2mtz.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/mmdb/libclipper-mmdb.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-z -Wl,relro -o .libs/cns2mtz cns2mtz.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/mmdb/.libs/libclipper-mmdb.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2
make[3]: Leaving directory '/build/clipper-2.1.20201109/examples'
make[2]: Leaving directory '/build/clipper-2.1.20201109/examples'
make[2]: Entering directory '/build/clipper-2.1.20201109'
make[2]: Leaving directory '/build/clipper-2.1.20201109'
make[1]: Leaving directory '/build/clipper-2.1.20201109'
create-stamp debian/debhelper-build-stamp
dh_testroot "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)"
dh_prep "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)"
rm -f -- debian/libclipper-dev.substvars debian/libclipper2.substvars debian/libclipper-doc.substvars
rm -fr -- debian/.debhelper/generated/libclipper-dev/ debian/libclipper-dev/ debian/tmp/ debian/.debhelper/generated/libclipper2/ debian/libclipper2/ debian/.debhelper/generated/libclipper-doc/ debian/libclipper-doc/
dh_auto_install "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)"
install -m0755 -d /build/clipper-2.1.20201109/debian/tmp
make -j1 install DESTDIR=/build/clipper-2.1.20201109/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/build/clipper-2.1.20201109'
Making install in clipper
make[2]: Entering directory '/build/clipper-2.1.20201109/clipper'
Making install in core
make[3]: Entering directory '/build/clipper-2.1.20201109/clipper/core'
make[4]: Entering directory '/build/clipper-2.1.20201109/clipper/core'
/bin/mkdir -p '/build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu'
/bin/bash ../../libtool --mode=install /usr/bin/install -c libclipper-core.la '/build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu'
libtool: install: /usr/bin/install -c .libs/libclipper-core.so.2.0.1 /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-core.so.2.0.1
libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-core.so.2.0.1 libclipper-core.so.2 || { rm -f libclipper-core.so.2 && ln -s libclipper-core.so.2.0.1 libclipper-core.so.2; }; })
libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-core.so.2.0.1 libclipper-core.so || { rm -f libclipper-core.so && ln -s libclipper-core.so.2.0.1 libclipper-core.so; }; })
libtool: install: /usr/bin/install -c .libs/libclipper-core.lai /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-core.la
libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu'
/bin/mkdir -p '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/core'
/usr/bin/install -c -m 644 atomsf.h container_types.h nxmap_operator.h cell.h coords.h ramachandran.h clipper_instance.h derivs.h resol_basisfn.h clipper_memory.h fftmap.h resol_fn.h clipper_message.h fftmap_sparse.h resol_targetfn.h clipper_precision.h hkl_compute.h rotation.h clipper_stats.h hkl_data.h spacegroup.h clipper_sysdep.h hkl_datatypes.h spacegroup_data.h clipper_test.h hkl_info.h symop.h clipper_types.h hkl_lookup.h clipper_util.h hkl_operators.h container.h map_interp.h xmap.h container_hkl.h map_utils.h container_map.h nxmap.h clipper_thread.h test_core.h '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/core'
/usr/bin/install -c -m 644 test_data.h '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/core'
make[4]: Leaving directory '/build/clipper-2.1.20201109/clipper/core'
make[3]: Leaving directory '/build/clipper-2.1.20201109/clipper/core'
Making install in contrib
make[3]: Entering directory '/build/clipper-2.1.20201109/clipper/contrib'
make[4]: Entering directory '/build/clipper-2.1.20201109/clipper/contrib'
/bin/mkdir -p '/build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu'
/bin/bash ../../libtool --mode=install /usr/bin/install -c libclipper-contrib.la '/build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu'
libtool: warning: relinking 'libclipper-contrib.la'
libtool: install: (cd /build/clipper-2.1.20201109/clipper/contrib; /bin/bash "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o libclipper-contrib.la -rpath /usr/lib/x86_64-linux-gnu convolution_search.lo sfcalc.lo edcalc.lo sfcalc_obs.lo fffear.lo sfscale.lo function_object_bases.lo sfweight.lo mapfilter.lo skeleton.lo originmatch.lo test_contrib.lo ../core/libclipper-core.la -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp)
libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/12/crtbeginS.o .libs/convolution_search.o .libs/sfcalc.o .libs/edcalc.o .libs/sfcalc_obs.o .libs/fffear.o .libs/sfscale.o .libs/function_object_bases.o .libs/sfweight.o .libs/mapfilter.o .libs/skeleton.o .libs/originmatch.o .libs/test_contrib.o -L/build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lclipper-core -L/usr/lib/gcc/x86_64-linux-gnu/12 -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/12/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-contrib.so.2 -o .libs/libclipper-contrib.so.2.0.1
libtool: install: /usr/bin/install -c .libs/libclipper-contrib.so.2.0.1T /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2.0.1
libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-contrib.so.2.0.1 libclipper-contrib.so.2 || { rm -f libclipper-contrib.so.2 && ln -s libclipper-contrib.so.2.0.1 libclipper-contrib.so.2; }; })
libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-contrib.so.2.0.1 libclipper-contrib.so || { rm -f libclipper-contrib.so && ln -s libclipper-contrib.so.2.0.1 libclipper-contrib.so; }; })
libtool: install: /usr/bin/install -c .libs/libclipper-contrib.lai /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-contrib.la
libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu'
/bin/mkdir -p '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/contrib'
/usr/bin/install -c -m 644 convolution_search.h mapfilter.h sfscale.h edcalc.h originmatch.h sfweight.h fffear.h sfcalc.h skeleton.h function_object_bases.h sfcalc_obs.h test_contrib.h '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/contrib'
make[4]: Leaving directory '/build/clipper-2.1.20201109/clipper/contrib'
make[3]: Leaving directory '/build/clipper-2.1.20201109/clipper/contrib'
make[3]: Entering directory '/build/clipper-2.1.20201109/clipper'
make[4]: Entering directory '/build/clipper-2.1.20201109/clipper'
/bin/mkdir -p '/build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu'
/bin/bash ../libtool --mode=install /usr/bin/install -c mmdb/libclipper-mmdb.la minimol/libclipper-minimol.la phs/libclipper-phs.la cif/libclipper-cif.la ccp4/libclipper-ccp4.la cns/libclipper-cns.la fortran/libclipper-fortran.la '/build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu'
libtool: warning: relinking 'mmdb/libclipper-mmdb.la'
libtool: install: (cd /build/clipper-2.1.20201109/clipper; /bin/bash "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o mmdb/libclipper-mmdb.la -rpath /usr/lib/x86_64-linux-gnu mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb2 -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp)
libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/12/crtbeginS.o mmdb/.libs/clipper_mmdb.o -L/build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lclipper-core -lmmdb2 -L/usr/lib/gcc/x86_64-linux-gnu/12 -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/12/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-mmdb.so.2 -o mmdb/.libs/libclipper-mmdb.so.2.0.1
libtool: install: /usr/bin/install -c mmdb/.libs/libclipper-mmdb.so.2.0.1T /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2.0.1
libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-mmdb.so.2.0.1 libclipper-mmdb.so.2 || { rm -f libclipper-mmdb.so.2 && ln -s libclipper-mmdb.so.2.0.1 libclipper-mmdb.so.2; }; })
libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-mmdb.so.2.0.1 libclipper-mmdb.so || { rm -f libclipper-mmdb.so && ln -s libclipper-mmdb.so.2.0.1 libclipper-mmdb.so; }; })
libtool: install: /usr/bin/install -c mmdb/.libs/libclipper-mmdb.lai /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-mmdb.la
libtool: warning: relinking 'minimol/libclipper-minimol.la'
libtool: install: (cd /build/clipper-2.1.20201109/clipper; /bin/bash "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o minimol/libclipper-minimol.la -rpath /usr/lib/x86_64-linux-gnu minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb2 -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp)
libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/12/crtbeginS.o minimol/.libs/minimol.o minimol/.libs/container_minimol.o minimol/.libs/minimol_data.o minimol/.libs/minimol_io.o minimol/.libs/minimol_seq.o minimol/.libs/minimol_utils.o -L/build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lclipper-core -lclipper-mmdb -lmmdb2 -L/usr/lib/gcc/x86_64-linux-gnu/12 -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/12/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-minimol.so.2 -o minimol/.libs/libclipper-minimol.so.2.0.1
libtool: install: /usr/bin/install -c minimol/.libs/libclipper-minimol.so.2.0.1T /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2.0.1
libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-minimol.so.2.0.1 libclipper-minimol.so.2 || { rm -f libclipper-minimol.so.2 && ln -s libclipper-minimol.so.2.0.1 libclipper-minimol.so.2; }; })
libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-minimol.so.2.0.1 libclipper-minimol.so || { rm -f libclipper-minimol.so && ln -s libclipper-minimol.so.2.0.1 libclipper-minimol.so; }; })
libtool: install: /usr/bin/install -c minimol/.libs/libclipper-minimol.lai /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-minimol.la
libtool: warning: relinking 'phs/libclipper-phs.la'
libtool: install: (cd /build/clipper-2.1.20201109/clipper; /bin/bash "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o phs/libclipper-phs.la -rpath /usr/lib/x86_64-linux-gnu phs/phs_io.lo core/libclipper-core.la -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp)
libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/12/crtbeginS.o phs/.libs/phs_io.o -L/build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lclipper-core -L/usr/lib/gcc/x86_64-linux-gnu/12 -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/12/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-phs.so.2 -o phs/.libs/libclipper-phs.so.2.0.1
libtool: install: /usr/bin/install -c phs/.libs/libclipper-phs.so.2.0.1T /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-phs.so.2.0.1
libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-phs.so.2.0.1 libclipper-phs.so.2 || { rm -f libclipper-phs.so.2 && ln -s libclipper-phs.so.2.0.1 libclipper-phs.so.2; }; })
libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-phs.so.2.0.1 libclipper-phs.so || { rm -f libclipper-phs.so && ln -s libclipper-phs.so.2.0.1 libclipper-phs.so; }; })
libtool: install: /usr/bin/install -c phs/.libs/libclipper-phs.lai /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-phs.la
libtool: warning: relinking 'cif/libclipper-cif.la'
libtool: install: (cd /build/clipper-2.1.20201109/clipper; /bin/bash "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o cif/libclipper-cif.la -rpath /usr/lib/x86_64-linux-gnu cif/cif_data_io.lo core/libclipper-core.la -lmmdb2 -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp)
libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/12/crtbeginS.o cif/.libs/cif_data_io.o -L/build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lclipper-core -lmmdb2 -L/usr/lib/gcc/x86_64-linux-gnu/12 -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/12/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-cif.so.2 -o cif/.libs/libclipper-cif.so.2.0.1
libtool: install: /usr/bin/install -c cif/.libs/libclipper-cif.so.2.0.1T /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-cif.so.2.0.1
libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-cif.so.2.0.1 libclipper-cif.so.2 || { rm -f libclipper-cif.so.2 && ln -s libclipper-cif.so.2.0.1 libclipper-cif.so.2; }; })
libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-cif.so.2.0.1 libclipper-cif.so || { rm -f libclipper-cif.so && ln -s libclipper-cif.so.2.0.1 libclipper-cif.so; }; })
libtool: install: /usr/bin/install -c cif/.libs/libclipper-cif.lai /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-cif.la
libtool: warning: relinking 'ccp4/libclipper-ccp4.la'
libtool: install: (cd /build/clipper-2.1.20201109/clipper; /bin/bash "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o ccp4/libclipper-ccp4.la -rpath /usr/lib/x86_64-linux-gnu ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp)
libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/12/crtbeginS.o ccp4/.libs/ccp4_mtz_types.o ccp4/.libs/ccp4_mtz_io.o ccp4/.libs/ccp4_map_io.o ccp4/.libs/ccp4_utils.o -L/build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lclipper-core -lccp4c -L/usr/lib/gcc/x86_64-linux-gnu/12 -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/12/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-ccp4.so.2 -o ccp4/.libs/libclipper-ccp4.so.2.0.1
libtool: install: /usr/bin/install -c ccp4/.libs/libclipper-ccp4.so.2.0.1T /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2.0.1
libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-ccp4.so.2.0.1 libclipper-ccp4.so.2 || { rm -f libclipper-ccp4.so.2 && ln -s libclipper-ccp4.so.2.0.1 libclipper-ccp4.so.2; }; })
libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-ccp4.so.2.0.1 libclipper-ccp4.so || { rm -f libclipper-ccp4.so && ln -s libclipper-ccp4.so.2.0.1 libclipper-ccp4.so; }; })
libtool: install: /usr/bin/install -c ccp4/.libs/libclipper-ccp4.lai /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-ccp4.la
libtool: warning: relinking 'cns/libclipper-cns.la'
libtool: install: (cd /build/clipper-2.1.20201109/clipper; /bin/bash "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o cns/libclipper-cns.la -rpath /usr/lib/x86_64-linux-gnu cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp)
libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/12/crtbeginS.o cns/.libs/cns_hkl_io.o cns/.libs/cns_map_io.o -L/build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lclipper-core -L/usr/lib/gcc/x86_64-linux-gnu/12 -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/12/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-cns.so.2 -o cns/.libs/libclipper-cns.so.2.0.1
libtool: install: /usr/bin/install -c cns/.libs/libclipper-cns.so.2.0.1T /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-cns.so.2.0.1
libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-cns.so.2.0.1 libclipper-cns.so.2 || { rm -f libclipper-cns.so.2 && ln -s libclipper-cns.so.2.0.1 libclipper-cns.so.2; }; })
libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-cns.so.2.0.1 libclipper-cns.so || { rm -f libclipper-cns.so && ln -s libclipper-cns.so.2.0.1 libclipper-cns.so; }; })
libtool: install: /usr/bin/install -c cns/.libs/libclipper-cns.lai /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-cns.la
libtool: warning: relinking 'fortran/libclipper-fortran.la'
libtool: install: (cd /build/clipper-2.1.20201109/clipper; /bin/bash "/build/clipper-2.1.20201109/libtool" --tag CXX --mode=relink g++ -g -O2 -ffile-prefix-map=/build/clipper-2.1.20201109=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-z,relro -o fortran/libclipper-fortran.la -rpath /usr/lib/x86_64-linux-gnu fortran/f_interface.lo core/libclipper-core.la contrib/libclipper-contrib.la -lm -inst-prefix-dir /build/clipper-2.1.20201109/debian/tmp)
libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/12/crtbeginS.o fortran/.libs/f_interface.o -L/build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lclipper-core -lclipper-contrib -L/usr/lib/gcc/x86_64-linux-gnu/12 -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/12/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-fortran.so.2 -o fortran/.libs/libclipper-fortran.so.2.0.1
libtool: install: /usr/bin/install -c fortran/.libs/libclipper-fortran.so.2.0.1T /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2.0.1
libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-fortran.so.2.0.1 libclipper-fortran.so.2 || { rm -f libclipper-fortran.so.2 && ln -s libclipper-fortran.so.2.0.1 libclipper-fortran.so.2; }; })
libtool: install: (cd /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-fortran.so.2.0.1 libclipper-fortran.so || { rm -f libclipper-fortran.so && ln -s libclipper-fortran.so.2.0.1 libclipper-fortran.so; }; })
libtool: install: /usr/bin/install -c fortran/.libs/libclipper-fortran.lai /build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-fortran.la
libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu'
/bin/mkdir -p '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/ccp4'
/usr/bin/install -c -m 644 ccp4/ccp4_map_io.h ccp4/ccp4_mtz_io.h ccp4/ccp4_mtz_types.h ccp4/ccp4_utils.h '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/ccp4'
/bin/mkdir -p '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/cif'
/usr/bin/install -c -m 644 cif/cif_data_io.h '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/cif'
/bin/mkdir -p '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/cns'
/usr/bin/install -c -m 644 cns/cns_hkl_io.h cns/cns_map_io.h '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/cns'
/bin/mkdir -p '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/minimol'
/usr/bin/install -c -m 644 minimol/container_minimol.h minimol/minimol_data.h minimol/minimol_seq.h minimol/minimol.h minimol/minimol_io.h minimol/minimol_utils.h '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/minimol'
/bin/mkdir -p '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/mmdb'
/usr/bin/install -c -m 644 mmdb/clipper_mmdb.h '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/mmdb'
/bin/mkdir -p '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/phs'
/usr/bin/install -c -m 644 phs/phs_io.h '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper/phs'
/bin/mkdir -p '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper'
/usr/bin/install -c -m 644 clipper-ccp4.h clipper-contrib.h clipper-phs.h clipper-cctbx.h clipper-minimol.h clipper.h clipper-cif.h clipper-mmdb.h minimal-clipper-hkl.h clipper-cns.h minimal-clipper-map.h '/build/clipper-2.1.20201109/debian/tmp/usr/include/clipper'
make[4]: Leaving directory '/build/clipper-2.1.20201109/clipper'
make[3]: Leaving directory '/build/clipper-2.1.20201109/clipper'
make[2]: Leaving directory '/build/clipper-2.1.20201109/clipper'
Making install in examples
make[2]: Entering directory '/build/clipper-2.1.20201109/examples'
make[3]: Entering directory '/build/clipper-2.1.20201109/examples'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/build/clipper-2.1.20201109/examples'
make[2]: Leaving directory '/build/clipper-2.1.20201109/examples'
make[2]: Entering directory '/build/clipper-2.1.20201109'
make[3]: Entering directory '/build/clipper-2.1.20201109'
make[3]: Nothing to be done for 'install-exec-am'.
/bin/mkdir -p '/build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig'
/usr/bin/install -c -m 644 clipper.pc '/build/clipper-2.1.20201109/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig'
make[3]: Leaving directory '/build/clipper-2.1.20201109'
make[2]: Leaving directory '/build/clipper-2.1.20201109'
make[1]: Leaving directory '/build/clipper-2.1.20201109'
dh_install "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)"
install -m0755 -d debian/libclipper-dev//usr/include
cp --reflink=auto -a debian/tmp/usr/include/clipper debian/libclipper-dev//usr/include/
install -m0755 -d debian/libclipper-dev//usr/lib/x86_64-linux-gnu
cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-cif.so debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-cns.so debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-contrib.so debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-core.so debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-fortran.so debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-minimol.so debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-phs.so debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig debian/libclipper-dev//usr/lib/x86_64-linux-gnu/
install -m0755 -d debian/libclipper2//usr/lib/x86_64-linux-gnu
cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-cif.so.2 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-cif.so.2.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-cns.so.2 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-cns.so.2.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-core.so.2 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-core.so.2.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-phs.so.2 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-phs.so.2.0.1 debian/libclipper2//usr/lib/x86_64-linux-gnu/
dh_installdocs "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)"
install -m0755 -d debian/libclipper-dev/usr/share/doc/libclipper-dev
install -p -m0644 debian/copyright debian/libclipper-dev/usr/share/doc/libclipper-dev/copyright
install -m0755 -d debian/libclipper2/usr/share/doc/libclipper2
install -p -m0644 debian/copyright debian/libclipper2/usr/share/doc/libclipper2/copyright
install -m0755 -d debian/libclipper-doc/usr/share/doc/libclipper-doc
install -m0755 -d debian/libclipper-doc/usr/share/doc/libclipper-dev
cp --reflink=auto -a ./debian/index.html debian/libclipper-doc/usr/share/doc/libclipper-dev
cd './doc/html/..' && find 'html' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/clipper-2.1.20201109/debian/libclipper-doc/usr/share/doc/libclipper-dev
chmod -R u\+rw,go=rX debian/libclipper-doc/usr/share/doc
install -p -m0644 debian/copyright debian/libclipper-doc/usr/share/doc/libclipper-doc/copyright
install -m0755 -d debian/libclipper-doc/usr/share/doc-base/
install -p -m0644 debian/libclipper-doc.doc-base debian/libclipper-doc/usr/share/doc-base/libclipper-doc.clipper
dh_installchangelogs "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)"
install -m0755 -d debian/libclipper2/usr/share/doc/libclipper2
install -p -m0644 debian/.debhelper/generated/libclipper2/dh_installchangelogs.dch.trimmed debian/libclipper2/usr/share/doc/libclipper2/changelog.Debian
install -p -m0644 ./ChangeLog debian/libclipper2/usr/share/doc/libclipper2/changelog
install -m0755 -d debian/libclipper-dev/usr/share/doc/libclipper-dev
install -p -m0644 debian/.debhelper/generated/libclipper-dev/dh_installchangelogs.dch.trimmed debian/libclipper-dev/usr/share/doc/libclipper-dev/changelog.Debian
install -p -m0644 ./ChangeLog debian/libclipper-dev/usr/share/doc/libclipper-dev/changelog
install -m0755 -d debian/libclipper-doc/usr/share/doc/libclipper-doc
install -p -m0644 debian/.debhelper/generated/libclipper-doc/dh_installchangelogs.dch.trimmed debian/libclipper-doc/usr/share/doc/libclipper-doc/changelog.Debian
install -p -m0644 ./ChangeLog debian/libclipper-doc/usr/share/doc/libclipper-doc/changelog
dh_installexamples "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)"
install -m0755 -d debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
cp --reflink=auto -a ./examples/c2test.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
cp --reflink=auto -a ./examples/ccad.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
cp --reflink=auto -a ./examples/cctbxtest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
cp --reflink=auto -a ./examples/ciftophs.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
cp --reflink=auto -a ./examples/cmaplocal.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
cp --reflink=auto -a ./examples/cns2mtz.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
cp --reflink=auto -a ./examples/cnstest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
cp --reflink=auto -a ./examples/diffmap.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
cp --reflink=auto -a ./examples/ffttest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
cp --reflink=auto -a ./examples/fomvar.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
cp --reflink=auto -a ./examples/ftndemo_lib.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
cp --reflink=auto -a ./examples/maketestdata.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
cp --reflink=auto -a ./examples/maphist.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
cp --reflink=auto -a ./examples/maptest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
cp --reflink=auto -a ./examples/memtest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
cp --reflink=auto -a ./examples/mmtest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
cp --reflink=auto -a ./examples/mtzcut.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
cp --reflink=auto -a ./examples/mtziotest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
cp --reflink=auto -a ./examples/mtzmissing.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
cp --reflink=auto -a ./examples/mtztest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
cp --reflink=auto -a ./examples/octest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
cp --reflink=auto -a ./examples/phstest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
cp --reflink=auto -a ./examples/reftest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
cp --reflink=auto -a ./examples/reftest2.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
cp --reflink=auto -a ./examples/rfltest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
cp --reflink=auto -a ./examples/sftest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
cp --reflink=auto -a ./examples/sgtest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
cp --reflink=auto -a ./examples/sktest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
cp --reflink=auto -a ./examples/symtest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
cp --reflink=auto -a ./examples/cns2mtz.h debian/libclipper-doc/usr/share/doc/libclipper-dev/examples
dh_installinit "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)"
dh_installsystemduser "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)"
dh_lintian "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)"
install -m0755 -d debian/libclipper2/usr/share/lintian/overrides
install -p -m0644 debian/libclipper2.lintian-overrides debian/libclipper2/usr/share/lintian/overrides/libclipper2
dh_perl "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)"
dh_link "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)"
rm -f debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so
ln -s libclipper-ccp4.so.2.0.1 debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so
rm -f debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-cif.so
ln -s libclipper-cif.so.2.0.1 debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-cif.so
rm -f debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-cns.so
ln -s libclipper-cns.so.2.0.1 debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-cns.so
rm -f debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-contrib.so
ln -s libclipper-contrib.so.2.0.1 debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-contrib.so
rm -f debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-core.so
ln -s libclipper-core.so.2.0.1 debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-core.so
rm -f debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-fortran.so
ln -s libclipper-fortran.so.2.0.1 debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-fortran.so
rm -f debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-minimol.so
ln -s libclipper-minimol.so.2.0.1 debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-minimol.so
rm -f debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so
ln -s libclipper-mmdb.so.2.0.1 debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so
rm -f debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-phs.so
ln -s libclipper-phs.so.2.0.1 debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-phs.so
rm -f debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2
ln -s libclipper-ccp4.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2
rm -f debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cif.so.2
ln -s libclipper-cif.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cif.so.2
rm -f debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cns.so.2
ln -s libclipper-cns.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cns.so.2
rm -f debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2
ln -s libclipper-contrib.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2
rm -f debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-core.so.2
ln -s libclipper-core.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-core.so.2
rm -f debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2
ln -s libclipper-fortran.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2
rm -f debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2
ln -s libclipper-minimol.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2
rm -f debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2
ln -s libclipper-mmdb.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2
rm -f debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-phs.so.2
ln -s libclipper-phs.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-phs.so.2
dh_strip_nondeterminism "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)"
Using 1605631860 as canonical time
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/nav_g.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/nav_f.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/map_p2.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/map_p1.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/include.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/hkl_objs.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/hierarchy.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/folderopen.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/folderclosed.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/doc.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/closed.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1Phi__fom.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1I__sigI__ano.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1I__sigI.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1Flag__bool.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1Flag.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1F__sigF__ano.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1F__sigF.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_s.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_h.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_b.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_a.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/sync_on.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/sync_off.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/splitbar.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/open.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/nav_h.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1F__phi.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1E__sigE__ano.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1E__sigE.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1D__sigD.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1ABCD.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap__base_1_1Map__reference__index.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap__base_1_1Map__reference__coord.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap__base_1_1Map__reference__base.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap__base.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Vec3.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1U__aniso__orth.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1U__aniso__frac.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Test__core.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Test__base.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__sigmaa__omegaa.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__sigmaa.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleLogI1I2.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleLogF1F2.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleI1I2.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleF1F2.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleEsq.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__meanFnth.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__meanEnth.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__base.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Symop.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1String.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Spgr__descr_1_1Symop__codes.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Spgr__descr.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Spacegroup.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Resolution__ordinal.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1ResolutionFn__nonlinear.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1ResolutionFn.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Resolution.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Range__sampling.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Ramachandran.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1RTop__orth.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1RTop__frac.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1RTop.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Property__base.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Property.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Prob__phi__2d.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__operator.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base_1_1Map__reference__index.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base_1_1Map__reference__coord.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__ctor.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__base.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Matrix.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Mat33sym.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Isymop.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Histogram.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info_1_1HKL__reference__index.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info_1_1HKL__reference__coord.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info_1_1HKL__reference__base.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__frac.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Container.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Cell__descr.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Cell.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CXmap.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CSpacegroup.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CResolution.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CNXmap__operator.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CNXmap.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Datatype__base.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Curv__orth.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Curv__map.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Curv__frac.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__reci__orth.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__reci__frac.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__orth.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__map.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__grid.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grad__map.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grad__frac.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Generic__ordinal.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__sparse__p1__xh.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__sparse__p1__hx.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__sparse__p1__base.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__p1.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__base.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__data__cacheobj.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__data__base.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__data.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grid__sampling.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grid__range.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grid.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grad__orth.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CHKL__info.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CHKL__data.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CGrid__sampling.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CCell.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__spline.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__log__gaussian.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__log__aniso__gaussian.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__linear.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__gaussian.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base_1_1Map__reference__base.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NX__operator.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__warn.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__info.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__generic.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__fatal.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__dtor.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__expcubic.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__binner.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__base.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__aniso__gaussian.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Atom__list.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1AtomShapeFn.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1AtomSF.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/bdwn.png using File::StripNondeterminism::handlers::png
Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/bc_s.png using File::StripNondeterminism::handlers::png
dh_compress "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)"
cd debian/libclipper-dev
cd debian/libclipper2
cd debian/libclipper-doc
chmod a-x usr/share/doc/libclipper2/changelog usr/share/doc/libclipper2/changelog.Debian
chmod a-x usr/share/doc/libclipper-dev/changelog usr/share/doc/libclipper-dev/changelog.Debian
gzip -9nf usr/share/doc/libclipper2/changelog usr/share/doc/libclipper2/changelog.Debian
gzip -9nf usr/share/doc/libclipper-dev/changelog usr/share/doc/libclipper-dev/changelog.Debian
cd '/build/clipper-2.1.20201109'
cd '/build/clipper-2.1.20201109'
chmod a-x usr/share/doc/libclipper-doc/changelog usr/share/doc/libclipper-doc/changelog.Debian
gzip -9nf usr/share/doc/libclipper-doc/changelog usr/share/doc/libclipper-doc/changelog.Debian
cd '/build/clipper-2.1.20201109'
dh_fixperms "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)"
find debian/libclipper-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/libclipper2 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/libclipper-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/libclipper-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libclipper-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/libclipper2/usr/share/doc -type f -a -true -a ! -regex 'debian/libclipper2/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/libclipper-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/libclipper-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/libclipper-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/libclipper2/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/libclipper2/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/libclipper-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/libclipper-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/libclipper2 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/libclipper-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/libclipper-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/libclipper-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
find debian/libclipper2/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
dh_missing "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)"
dh_missing: warning: usr/lib/x86_64-linux-gnu/libclipper-ccp4.la exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/lib/x86_64-linux-gnu/libclipper-cif.la exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/lib/x86_64-linux-gnu/libclipper-cns.la exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/lib/x86_64-linux-gnu/libclipper-contrib.la exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/lib/x86_64-linux-gnu/libclipper-core.la exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/lib/x86_64-linux-gnu/libclipper-fortran.la exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/lib/x86_64-linux-gnu/libclipper-minimol.la exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/lib/x86_64-linux-gnu/libclipper-mmdb.la exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/lib/x86_64-linux-gnu/libclipper-phs.la exists in debian/tmp but is not installed to anywhere
The following debhelper tools have reported what they installed (with files per package)
* dh_install: libclipper-dev (11), libclipper-doc (0), libclipper2 (18)
* dh_installdocs: libclipper-dev (0), libclipper-doc (2), libclipper2 (0)
* dh_installexamples: libclipper-dev (0), libclipper-doc (30), libclipper2 (0)
If the missing files are installed by another tool, please file a bug against it.
When filing the report, if the tool is not part of debhelper itself, please reference the
"Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+).
(in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz)
Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built
If the omission is intentional or no other helper can take care of this consider adding the
paths to debian/not-installed.
Remember to be careful with paths containing "x86_64-linux-gnu", where you might need to
use a wildcard or (assuming compat 13+) e.g. ${DEB_HOST_MULTIARCH} in debian/not-installed
to ensure it works on all architectures (see #961104).
dh_dwz "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)"
install -m0755 -d debian/libclipper2/usr/lib/debug/.dwz/x86_64-linux-gnu
dwz -mdebian/libclipper2/usr/lib/debug/.dwz/x86_64-linux-gnu/libclipper2.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/libclipper2.debug -- debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cif.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cns.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-core.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-phs.so.2.0.1
objcopy --compress-debug-sections debian/libclipper2/usr/lib/debug/.dwz/x86_64-linux-gnu/libclipper2.debug
chmod 0644 -- debian/libclipper2/usr/lib/debug/.dwz/x86_64-linux-gnu/libclipper2.debug
dh_strip "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)"
install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/6f
objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-core.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/6f/6502661edbacd28ec7300759433f4d322922d9.debug
chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/6f/6502661edbacd28ec7300759433f4d322922d9.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-core.so.2.0.1
objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/6f/6502661edbacd28ec7300759433f4d322922d9.debug debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-core.so.2.0.1
install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/e8
objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/e8/8ad02456a4850cc628cca0a7ecb78291409a54.debug
chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/e8/8ad02456a4850cc628cca0a7ecb78291409a54.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2.0.1
objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/e8/8ad02456a4850cc628cca0a7ecb78291409a54.debug debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2.0.1
install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/0a
objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/0a/ba0ec5c79e08f54d625c9a1248946436869680.debug
chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/0a/ba0ec5c79e08f54d625c9a1248946436869680.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2.0.1
objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/0a/ba0ec5c79e08f54d625c9a1248946436869680.debug debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2.0.1
install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/3f
objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/3f/5e17ef431085407750a9b4761d09497fa04103.debug
chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/3f/5e17ef431085407750a9b4761d09497fa04103.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2.0.1
objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/3f/5e17ef431085407750a9b4761d09497fa04103.debug debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2.0.1
install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/7e
objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cns.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/7e/5c5421568ad6dcb70636bee79a06f8bb1e9ee2.debug
chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/7e/5c5421568ad6dcb70636bee79a06f8bb1e9ee2.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cns.so.2.0.1
objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/7e/5c5421568ad6dcb70636bee79a06f8bb1e9ee2.debug debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cns.so.2.0.1
install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/f0
objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cif.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/f0/c1b218267811cea501758206f7ccf72ad487f8.debug
chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/f0/c1b218267811cea501758206f7ccf72ad487f8.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cif.so.2.0.1
objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/f0/c1b218267811cea501758206f7ccf72ad487f8.debug debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cif.so.2.0.1
install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/5a
objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-phs.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/5a/34a3eb0e1f7e47af85a54787d8827f26bb7171.debug
chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/5a/34a3eb0e1f7e47af85a54787d8827f26bb7171.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-phs.so.2.0.1
objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/5a/34a3eb0e1f7e47af85a54787d8827f26bb7171.debug debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-phs.so.2.0.1
install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/73
objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/73/3d4e43f7bc818dd5d98508bd5345f709b09090.debug
chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/73/3d4e43f7bc818dd5d98508bd5345f709b09090.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2.0.1
objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/73/3d4e43f7bc818dd5d98508bd5345f709b09090.debug debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2.0.1
install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/9c
objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/9c/b629bc2588ff7711be858e5a6a4beac80710e9.debug
chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/9c/b629bc2588ff7711be858e5a6a4beac80710e9.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2.0.1
objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/9c/b629bc2588ff7711be858e5a6a4beac80710e9.debug debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2.0.1
install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.dwz
cp --reflink=auto -a debian/libclipper2/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.dwz
rm -fr debian/libclipper2/usr/lib/debug/.dwz
rmdir -p --ignore-fail-on-non-empty debian/libclipper2/usr/lib/debug
install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/usr/share/doc
ln -s libclipper2 debian/.debhelper/libclipper2/dbgsym-root/usr/share/doc/libclipper2-dbgsym
install -m0755 -d debian/.debhelper/libclipper2
dh_makeshlibs "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)"
rm -f debian/libclipper-dev/DEBIAN/shlibs
rm -f debian/libclipper2/DEBIAN/shlibs
install -m0755 -d debian/libclipper2/DEBIAN
echo "libclipper-ccp4 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs
echo "libclipper-cif 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs
echo "libclipper-cns 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs
echo "libclipper-contrib 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs
echo "libclipper-core 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs
echo "libclipper-fortran 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs
echo "libclipper-minimol 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs
echo "libclipper-mmdb 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs
echo "libclipper-phs 2 libclipper2 (>= 2.1.20201109)" >> debian/libclipper2/DEBIAN/shlibs
chmod 0644 -- debian/libclipper2/DEBIAN/shlibs
mv debian/.debhelper/generated/libclipper2/triggers.new debian/.debhelper/generated/libclipper2/triggers
rm -f debian/libclipper-doc/DEBIAN/shlibs
dh_shlibdeps "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)"
install -m0755 -d debian/libclipper2/DEBIAN
dpkg-shlibdeps -Tdebian/libclipper2.substvars debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-core.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cns.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cif.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-phs.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2.0.1
dh_installdeb "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)"
install -m0755 -d debian/libclipper-dev/DEBIAN
install -m0755 -d debian/libclipper2/DEBIAN
install -p -m0644 debian/.debhelper/generated/libclipper2/triggers debian/libclipper2/DEBIAN/triggers
install -m0755 -d debian/libclipper-doc/DEBIAN
dh_gencontrol "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)"
install -m0755 -d debian/libclipper-dev/DEBIAN
echo misc:Depends= >> debian/libclipper-dev.substvars
echo misc:Pre-Depends= >> debian/libclipper-dev.substvars
dpkg-gencontrol -plibclipper-dev -ldebian/changelog -Tdebian/libclipper-dev.substvars -Pdebian/libclipper-dev
install -m0755 -d debian/libclipper2/DEBIAN
echo misc:Depends= >> debian/libclipper2.substvars
echo misc:Pre-Depends= >> debian/libclipper2.substvars
install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/DEBIAN
dpkg-gencontrol -plibclipper2 -ldebian/changelog -Tdebian/libclipper2.substvars -Pdebian/.debhelper/libclipper2/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=libclipper2-dbgsym "-DDepends=libclipper2 (= \${binary:Version})" "-DDescription=debug symbols for libclipper2" "-DBuild-Ids=0aba0ec5c79e08f54d625c9a1248946436869680 3f5e17ef431085407750a9b4761d09497fa04103 5a34a3eb0e1f7e47af85a54787d8827f26bb7171 6f6502661edbacd28ec7300759433f4d322922d9 733d4e43f7bc818dd5d98508bd5345f709b09090 7e5c5421568ad6dcb70636bee79a06f8bb1e9ee2 9cb629bc2588ff7711be858e5a6a4beac80710e9 e88ad02456a4850cc628cca0a7ecb78291409a54 f0c1b218267811cea501758206f7ccf72ad487f8" -DSection=debug "-DReplaces=libclipper2-dbg (<< 2.1.20160809-1~)" "-DBreaks=libclipper2-dbg (<< 2.1.20160809-1~)"
install -m0755 -d debian/libclipper-doc/DEBIAN
echo misc:Depends= >> debian/libclipper-doc.substvars
echo misc:Pre-Depends= >> debian/libclipper-doc.substvars
dpkg-gencontrol -plibclipper-doc -ldebian/changelog -Tdebian/libclipper-doc.substvars -Pdebian/libclipper-doc
chmod 0644 -- debian/libclipper-dev/DEBIAN/control
chmod 0644 -- debian/libclipper-doc/DEBIAN/control
chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/DEBIAN/control
dpkg-gencontrol -plibclipper2 -ldebian/changelog -Tdebian/libclipper2.substvars -Pdebian/libclipper2
chmod 0644 -- debian/libclipper2/DEBIAN/control
dh_md5sums "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)"
install -m0755 -d debian/libclipper-dev/DEBIAN
install -m0755 -d debian/libclipper-doc/DEBIAN
install -m0755 -d debian/libclipper2/DEBIAN
cd debian/libclipper-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
cd debian/libclipper2 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
cd debian/libclipper-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/libclipper-dev/DEBIAN/md5sums
chmod 0644 -- debian/libclipper2/DEBIAN/md5sums
install -m0755 -d debian/.debhelper/libclipper2/dbgsym-root/DEBIAN
cd debian/.debhelper/libclipper2/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/DEBIAN/md5sums
chmod 0644 -- debian/libclipper-doc/DEBIAN/md5sums
dh_builddeb "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)"
dpkg-deb --root-owner-group --build debian/libclipper-dev ..
dpkg-deb --root-owner-group --build debian/libclipper2 ..
dpkg-deb --root-owner-group --build debian/.debhelper/libclipper2/dbgsym-root ..
dpkg-deb --root-owner-group --build debian/libclipper-doc ..
dpkg-deb: building package 'libclipper-dev' in '../libclipper-dev_2.1.20201109-1_amd64.deb'.
dpkg-deb: building package 'libclipper2' in '../libclipper2_2.1.20201109-1_amd64.deb'.
dpkg-deb: building package 'libclipper2-dbgsym' in '../libclipper2-dbgsym_2.1.20201109-1_amd64.deb'.
dpkg-deb: building package 'libclipper-doc' in '../libclipper-doc_2.1.20201109-1_all.deb'.
dpkg-genbuildinfo --build=binary -O../clipper_2.1.20201109-1_amd64.buildinfo
dpkg-genchanges --build=binary -O../clipper_2.1.20201109-1_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/3983400 and its subdirectories
I: Current time: Thu Jun 20 11:45:02 -12 2024
I: pbuilder-time-stamp: 1718927102