I: pbuilder: network access will be disabled during build
I: Current time: Wed Jun 12 13:16:22 +14 2024
I: pbuilder-time-stamp: 1718147782
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [epcr_2.3.12-1-9.dsc]
I: copying [./epcr_2.3.12-1.orig.tar.gz]
I: copying [./epcr_2.3.12-1-9.debian.tar.xz]
I: Extracting source
gpgv: Signature made Tue Dec 8 10:11:34 2020 +14
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./epcr_2.3.12-1-9.dsc: no acceptable signature found
dpkg-source: info: extracting epcr in epcr-2.3.12-1
dpkg-source: info: unpacking epcr_2.3.12-1.orig.tar.gz
dpkg-source: info: unpacking epcr_2.3.12-1-9.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix_clean_target.patch
dpkg-source: info: applying fix_header_location.patch
dpkg-source: info: applying ensure_build_options.patch
dpkg-source: info: applying use-dpkg-buildflags.patch
dpkg-source: info: applying mayhem.patch
dpkg-source: info: applying spelling.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/1730850/tmp/hooks/D01_modify_environment starting
debug: Running on ionos5-amd64.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 Jun 12 13:16 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/1730850/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/1730850/tmp/hooks/D02_print_environment starting
I: set
BASH=/bin/sh
BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
BASH_ALIASES=()
BASH_ARGC=()
BASH_ARGV=()
BASH_CMDS=()
BASH_LINENO=([0]="12" [1]="0")
BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu")
BASH_VERSION='5.2.15(1)-release'
BUILDDIR=/build
BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
BUILDUSERNAME=pbuilder2
BUILD_ARCH=amd64
DEBIAN_FRONTEND=noninteractive
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16'
DIRSTACK=()
DISTRIBUTION=bookworm
EUID=0
FUNCNAME=([0]="Echo" [1]="main")
GROUPS=()
HOME=/root
HOSTNAME=i-capture-the-hostname
HOSTTYPE=x86_64
HOST_ARCH=amd64
IFS='
'
INVOCATION_ID=ae093b96476d4547a8ec5b18d5c615fa
LANG=C
LANGUAGE=et_EE:et
LC_ALL=C
MACHTYPE=x86_64-pc-linux-gnu
MAIL=/var/mail/root
OPTERR=1
OPTIND=1
OSTYPE=linux-gnu
PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
PBCURRENTCOMMANDLINEOPERATION=build
PBUILDER_OPERATION=build
PBUILDER_PKGDATADIR=/usr/share/pbuilder
PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
PBUILDER_SYSCONFDIR=/etc
PIPESTATUS=([0]="0")
POSIXLY_CORRECT=y
PPID=1730850
PS4='+ '
PWD=/
SHELL=/bin/bash
SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
SHLVL=3
SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bCuxryPW/pbuilderrc_laAl --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bCuxryPW/b2 --logfile b2/build.log --extrapackages usrmerge epcr_2.3.12-1-9.dsc'
SUDO_GID=110
SUDO_UID=105
SUDO_USER=jenkins
TERM=unknown
TZ=/usr/share/zoneinfo/Etc/GMT-14
UID=0
USER=root
_='I: set'
http_proxy=http://85.184.249.68:3128
I: uname -a
Linux i-capture-the-hostname 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux
I: ls -l /bin
total 5632
-rwxr-xr-x 1 root root 1265648 Apr 24 2023 bash
-rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2
-rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep
-rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2
-rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore
-rwxr-xr-x 1 root root 44016 Sep 21 2022 cat
-rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp
-rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod
-rwxr-xr-x 1 root root 72752 Sep 21 2022 chown
-rwxr-xr-x 1 root root 151152 Sep 21 2022 cp
-rwxr-xr-x 1 root root 125640 Jan 6 2023 dash
-rwxr-xr-x 1 root root 121904 Sep 21 2022 date
-rwxr-xr-x 1 root root 89240 Sep 21 2022 dd
-rwxr-xr-x 1 root root 102200 Sep 21 2022 df
-rwxr-xr-x 1 root root 151344 Sep 21 2022 dir
-rwxr-xr-x 1 root root 88656 Mar 24 2023 dmesg
lrwxrwxrwx 1 root root 8 Dec 20 2022 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Dec 20 2022 domainname -> hostname
-rwxr-xr-x 1 root root 43856 Sep 21 2022 echo
-rwxr-xr-x 1 root root 41 Jan 25 2023 egrep
-rwxr-xr-x 1 root root 35664 Sep 21 2022 false
-rwxr-xr-x 1 root root 41 Jan 25 2023 fgrep
-rwxr-xr-x 1 root root 85600 Mar 24 2023 findmnt
-rwsr-xr-x 1 root root 35128 Mar 23 2023 fusermount
-rwxr-xr-x 1 root root 203152 Jan 25 2023 grep
-rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip
-rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe
-rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip
-rwxr-xr-x 1 root root 22680 Dec 20 2022 hostname
-rwxr-xr-x 1 root root 72824 Sep 21 2022 ln
-rwxr-xr-x 1 root root 53024 Mar 24 2023 login
-rwxr-xr-x 1 root root 151344 Sep 21 2022 ls
-rwxr-xr-x 1 root root 207168 Mar 24 2023 lsblk
-rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir
-rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod
-rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp
-rwxr-xr-x 1 root root 59712 Mar 24 2023 more
-rwsr-xr-x 1 root root 59704 Mar 24 2023 mount
-rwxr-xr-x 1 root root 18744 Mar 24 2023 mountpoint
-rwxr-xr-x 1 root root 142968 Sep 21 2022 mv
lrwxrwxrwx 1 root root 8 Dec 20 2022 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd
lrwxrwxrwx 1 root root 4 Apr 24 2023 rbash -> bash
-rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink
-rwxr-xr-x 1 root root 72752 Sep 21 2022 rm
-rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir
-rwxr-xr-x 1 root root 27560 Nov 3 2022 run-parts
-rwxr-xr-x 1 root root 126424 Jan 6 2023 sed
lrwxrwxrwx 1 root root 9 Jun 12 13:16 sh -> /bin/bash
-rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep
-rwxr-xr-x 1 root root 85008 Sep 21 2022 stty
-rwsr-xr-x 1 root root 72000 Mar 24 2023 su
-rwxr-xr-x 1 root root 39824 Sep 21 2022 sync
-rwxr-xr-x 1 root root 531984 Apr 7 2023 tar
-rwxr-xr-x 1 root root 14520 Nov 3 2022 tempfile
-rwxr-xr-x 1 root root 109616 Sep 21 2022 touch
-rwxr-xr-x 1 root root 35664 Sep 21 2022 true
-rwxr-xr-x 1 root root 14568 Mar 23 2023 ulockmgr_server
-rwsr-xr-x 1 root root 35128 Mar 24 2023 umount
-rwxr-xr-x 1 root root 43888 Sep 21 2022 uname
-rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress
-rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir
-rwxr-xr-x 1 root root 72024 Mar 24 2023 wdctl
lrwxrwxrwx 1 root root 8 Dec 20 2022 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat
-rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp
-rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff
-rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep
-rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep
-rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce
-rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep
-rwxr-xr-x 1 root root 2206 Apr 10 2022 zless
-rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore
-rwxr-xr-x 1 root root 4577 Apr 10 2022 znew
I: user script /srv/workspace/pbuilder/1730850/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13)
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19596 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget
0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded.
Need to get 18.7 MB of archives. After unpacking 72.4 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 2 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB]
Get: 3 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB]
Get: 4 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB]
Get: 5 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB]
Get: 6 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB]
Get: 7 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB]
Get: 8 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB]
Get: 9 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB]
Get: 10 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB]
Get: 11 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB]
Get: 12 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB]
Get: 13 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get: 15 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB]
Get: 16 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 17 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB]
Get: 18 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 19 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 20 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B]
Get: 21 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 22 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 23 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB]
Get: 24 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB]
Get: 25 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB]
Get: 26 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB]
Get: 27 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB]
Get: 28 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 29 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 30 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB]
Fetched 18.7 MB in 4s (5003 kB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sensible-utils.
(Reading database ...
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(Reading database ... 10%
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19596 files and directories currently installed.)
Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ...
Unpacking sensible-utils (0.0.17+nmu1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_amd64.deb ...
Unpacking libmagic-mgc (1:5.44-3) ...
Selecting previously unselected package libmagic1:amd64.
Preparing to unpack .../02-libmagic1_1%3a5.44-3_amd64.deb ...
Unpacking libmagic1:amd64 (1:5.44-3) ...
Selecting previously unselected package file.
Preparing to unpack .../03-file_1%3a5.44-3_amd64.deb ...
Unpacking file (1:5.44-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../04-gettext-base_0.21-12_amd64.deb ...
Unpacking gettext-base (0.21-12) ...
Selecting previously unselected package libuchardet0:amd64.
Preparing to unpack .../05-libuchardet0_0.0.7-1_amd64.deb ...
Unpacking libuchardet0:amd64 (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../06-groff-base_1.22.4-10_amd64.deb ...
Unpacking groff-base (1.22.4-10) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_amd64.deb ...
Unpacking bsdextrautils (2.38.1-5+b1) ...
Selecting previously unselected package libpipeline1:amd64.
Preparing to unpack .../08-libpipeline1_1.5.7-1_amd64.deb ...
Unpacking libpipeline1:amd64 (1.5.7-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../09-man-db_2.11.2-2_amd64.deb ...
Unpacking man-db (2.11.2-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../10-m4_1.4.19-3_amd64.deb ...
Unpacking m4 (1.4.19-3) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../11-autoconf_2.71-3_all.deb ...
Unpacking autoconf (2.71-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../14-autopoint_0.21-12_all.deb ...
Unpacking autopoint (0.21-12) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ...
Unpacking libdebhelper-perl (13.11.4) ...
Selecting previously unselected package libtool.
Preparing to unpack .../16-libtool_2.4.7-5_all.deb ...
Unpacking libtool (2.4.7-5) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../17-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ...
Unpacking libsub-override-perl (0.09-4) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.13.1-1) ...
Selecting previously unselected package libelf1:amd64.
Preparing to unpack .../22-libelf1_0.188-2.1_amd64.deb ...
Unpacking libelf1:amd64 (0.188-2.1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../23-dwz_0.15-1_amd64.deb ...
Unpacking dwz (0.15-1) ...
Selecting previously unselected package libicu72:amd64.
Preparing to unpack .../24-libicu72_72.1-3_amd64.deb ...
Unpacking libicu72:amd64 (72.1-3) ...
Selecting previously unselected package libxml2:amd64.
Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.2_amd64.deb ...
Unpacking libxml2:amd64 (2.9.14+dfsg-1.2) ...
Selecting previously unselected package gettext.
Preparing to unpack .../26-gettext_0.21-12_amd64.deb ...
Unpacking gettext (0.21-12) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../29-debhelper_13.11.4_all.deb ...
Unpacking debhelper (13.11.4) ...
Setting up libpipeline1:amd64 (1.5.7-1) ...
Setting up libicu72:amd64 (72.1-3) ...
Setting up bsdextrautils (2.38.1-5+b1) ...
Setting up libmagic-mgc (1:5.44-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.11.4) ...
Setting up libmagic1:amd64 (1:5.44-3) ...
Setting up gettext-base (0.21-12) ...
Setting up m4 (1.4.19-3) ...
Setting up file (1:5.44-3) ...
Setting up autotools-dev (20220109.1) ...
Setting up autopoint (0.21-12) ...
Setting up autoconf (2.71-3) ...
Setting up sensible-utils (0.0.17+nmu1) ...
Setting up libuchardet0:amd64 (0.0.7-1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libelf1:amd64 (0.188-2.1) ...
Setting up libxml2:amd64 (2.9.14+dfsg-1.2) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up gettext (0.21-12) ...
Setting up libtool (2.4.7-5) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.22.4-10) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.11.2-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up debhelper (13.11.4) ...
Processing triggers for libc-bin (2.36-9) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
usrmerge is already the newest version (35).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: user script /srv/workspace/pbuilder/1730850/tmp/hooks/A99_set_merged_usr starting
Re-configuring usrmerge...
removed '/etc/unsupported-skip-usrmerge-conversion'
The system has been successfully converted.
I: user script /srv/workspace/pbuilder/1730850/tmp/hooks/A99_set_merged_usr finished
hostname: Name or service not known
I: Running cd /build/epcr-2.3.12-1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../epcr_2.3.12-1-9_source.changes
dpkg-buildpackage: info: source package epcr
dpkg-buildpackage: info: source version 2.3.12-1-9
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
debian/rules clean
dh clean --no-parallel
debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/epcr-2.3.12-1'
rm -fr epcr
rm -f *_depend.mk
rm -f libepcr.a *.o
rm -f e-PCR famap fahash re-PCR
make[1]: Leaving directory '/build/epcr-2.3.12-1'
dh_autoreconf_clean -O--no-parallel
dh_clean -O--no-parallel
debian/rules binary
dh binary --no-parallel
dh_update_autotools_config -O--no-parallel
dh_autoreconf -O--no-parallel
dh_auto_configure -O--no-parallel
debian/rules override_dh_auto_build
make[1]: Entering directory '/build/epcr-2.3.12-1'
dh_auto_build -- links depend all OPTIMIZE=6
make -j1 "INSTALL=install --strip-program=true" links depend all OPTIMIZE=6
make[2]: Entering directory '/build/epcr-2.3.12-1'
for i in libepcr cmd_epcr cmd_famap cmd_fahash cmd_rpcr ; do \
make -ef ./stand/Makefile.$i CXXFLAGS='-g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1' links ; \
done
make[3]: Entering directory '/build/epcr-2.3.12-1'
if test -n "epcr" ; then \
test -L epcr || ln -s . epcr ; \
fi
make[3]: Leaving directory '/build/epcr-2.3.12-1'
make[3]: Entering directory '/build/epcr-2.3.12-1'
if test -n "" ; then \
test -L || ln -s . ; \
fi
make[3]: Leaving directory '/build/epcr-2.3.12-1'
make[3]: Entering directory '/build/epcr-2.3.12-1'
if test -n "" ; then \
test -L || ln -s . ; \
fi
make[3]: Leaving directory '/build/epcr-2.3.12-1'
make[3]: Entering directory '/build/epcr-2.3.12-1'
if test -n "" ; then \
test -L || ln -s . ; \
fi
make[3]: Leaving directory '/build/epcr-2.3.12-1'
make[3]: Entering directory '/build/epcr-2.3.12-1'
if test -n "" ; then \
test -L || ln -s . ; \
fi
make[3]: Leaving directory '/build/epcr-2.3.12-1'
for i in libepcr cmd_epcr cmd_famap cmd_fahash cmd_rpcr ; do \
make -ef ./stand/Makefile.$i CXXFLAGS='-g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1' depend ; \
done
make[3]: Entering directory '/build/epcr-2.3.12-1'
g++ -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -M ./faread.cpp ./fast_seqio_read.cpp ./fast_seqio_write.cpp ./hashset.cpp ./mmap.cpp ./align.cpp ./stsmatch_i.cpp ./stsmatch_m.cpp ./stsfilter.cpp ./stsmatch.cpp ./fahash_create.cpp ./fahash_create1.cpp ./fahash_create2.cpp ./fahash_lookup.cpp | perl -ne's/^([^\s#]+)/\$(objdir)\/$1/;print' > ./libepcr_depend.mk
make[3]: Leaving directory '/build/epcr-2.3.12-1'
make[3]: Entering directory '/build/epcr-2.3.12-1'
g++ -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -M ./e-PCR_main.cpp | perl -ne's/^([^\s#]+)/\$(objdir)\/$1/;print' > ./cmdepcr_depend.mk
make[3]: Leaving directory '/build/epcr-2.3.12-1'
make[3]: Entering directory '/build/epcr-2.3.12-1'
g++ -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -M ./famap_main.cpp | perl -ne's/^([^\s#]+)/\$(objdir)\/$1/;print' > ./cmdfamap_depend.mk
make[3]: Leaving directory '/build/epcr-2.3.12-1'
make[3]: Entering directory '/build/epcr-2.3.12-1'
g++ -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -M ./fahash_main.cpp | perl -ne's/^([^\s#]+)/\$(objdir)\/$1/;print' > ./cmdfahash_depend.mk
make[3]: Leaving directory '/build/epcr-2.3.12-1'
make[3]: Entering directory '/build/epcr-2.3.12-1'
g++ -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -M ./re-PCR_main.cpp | perl -ne's/^([^\s#]+)/\$(objdir)\/$1/;print' > ./cmdrpcr_depend.mk
make[3]: Leaving directory '/build/epcr-2.3.12-1'
for i in libepcr cmd_epcr cmd_famap cmd_fahash cmd_rpcr ; do \
make -ef ./stand/Makefile.$i CXXFLAGS='-g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1' all ; \
done
make[3]: Entering directory '/build/epcr-2.3.12-1'
if test -n "epcr" ; then \
test -L epcr || ln -s . epcr ; \
fi
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c faread.cpp -o faread.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fast_seqio_read.cpp -o fast_seqio_read.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fast_seqio_write.cpp -o fast_seqio_write.o
fast_seqio_write.cpp:45:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
45 | FILE * f = fopen64( fname.c_str(), "w"FILE_BINARY );
| ^
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c hashset.cpp -o hashset.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c mmap.cpp -o mmap.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c align.cpp -o align.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c stsmatch_i.cpp -o stsmatch_i.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c stsmatch_m.cpp -o stsmatch_m.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c stsfilter.cpp -o stsfilter.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c stsmatch.cpp -o stsmatch.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fahash_create.cpp -o fahash_create.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fahash_create1.cpp -o fahash_create1.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fahash_create2.cpp -o fahash_create2.o
fahash_create2.cpp: In member function 'virtual void ncbi::pcr_tools::CFaIndexer2::DumpTables()':
fahash_create2.cpp:145:9: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
145 | auto_ptr<CFastaMap> fmap( 0 );
| ^~~~~~~~
In file included from /usr/include/c++/12/memory:76,
from fahash_create2.cpp:38:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fahash_lookup.cpp -o fahash_lookup.o
fahash_lookup.cpp: In member function 'void ncbi::pcr_tools::CFaLookup::AttachFile(const ncbi::pcr_tools::CFaData::string&)':
fahash_lookup.cpp:161:13: warning: ignoring return value of 'ssize_t read(int, void*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result]
161 | read( m_Fd, buff, 16 ); // signature
| ~~~~^~~~~~~~~~~~~~~~~~
rm -f libepcr.a
ar cru libepcr.a ./faread.o ./fast_seqio_read.o ./fast_seqio_write.o ./hashset.o ./mmap.o ./align.o ./stsmatch_i.o ./stsmatch_m.o ./stsfilter.o ./stsmatch.o ./fahash_create.o ./fahash_create1.o ./fahash_create2.o ./fahash_lookup.o
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib libepcr.a
make[3]: Leaving directory '/build/epcr-2.3.12-1'
make[3]: Entering directory '/build/epcr-2.3.12-1'
if test -n "" ; then \
test -L || ln -s . ; \
fi
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c e-PCR_main.cpp -o e-PCR_main.o
e-PCR_main.cpp: In member function 'int CMain::Execute()':
e-PCR_main.cpp:626:9: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
626 | auto_ptr<CPcrMachineCallback> cbk(0);
| ^~~~~~~~
In file included from /usr/include/c++/12/memory:76,
from e-PCR_main.cpp:40:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
rm -f e-PCR
g++ -Wl,-z,relro -Wl,-z,now -L. -o e-PCR ./e-PCR_main.o -lepcr
make[3]: Leaving directory '/build/epcr-2.3.12-1'
make[3]: Entering directory '/build/epcr-2.3.12-1'
if test -n "" ; then \
test -L || ln -s . ; \
fi
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c famap_main.cpp -o famap_main.o
famap_main.cpp: In member function 'int CMain::Execute()':
famap_main.cpp:145:1: warning: control reaches end of non-void function [-Wreturn-type]
145 | }
| ^
rm -f famap
g++ -Wl,-z,relro -Wl,-z,now -L. -o famap ./famap_main.o -lepcr
make[3]: Leaving directory '/build/epcr-2.3.12-1'
make[3]: Entering directory '/build/epcr-2.3.12-1'
if test -n "" ; then \
test -L || ln -s . ; \
fi
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fahash_main.cpp -o fahash_main.o
fahash_main.cpp: In member function 'int CMain::Build()':
fahash_main.cpp:212:5: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
212 | auto_ptr<AFaIndexerBase> indexer(
| ^~~~~~~~
In file included from /usr/include/c++/12/memory:76,
from fahash_main.cpp:41:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
fahash_main.cpp: In member function 'int CMain::Stat()':
fahash_main.cpp:303:41: warning: format '%lld' expects argument of type 'long long int', but argument 6 has type 'long unsigned int' [-Wformat=]
303 | fprintf(out,"%d\t%d\t%s\t%lld\t%lf\n",wd,i,wtype,
| ~~~^
| |
| long long int
| %ld
fahash_main.cpp: In member function 'int CMain::Execute()':
fahash_main.cpp:261:1: warning: control reaches end of non-void function [-Wreturn-type]
261 | }
| ^
rm -f fahash
g++ -Wl,-z,relro -Wl,-z,now -L. -o fahash ./fahash_main.o -lepcr
make[3]: Leaving directory '/build/epcr-2.3.12-1'
make[3]: Entering directory '/build/epcr-2.3.12-1'
if test -n "" ; then \
test -L || ln -s . ; \
fi
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c re-PCR_main.cpp -o re-PCR_main.o
re-PCR_main.cpp: In member function 'int CMain::PrimerLookup()':
re-PCR_main.cpp:365:17: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
365 | auto_ptr<char> rev(FlipSequence(argv[i]));
| ^~~~~~~~
In file included from /usr/include/c++/12/memory:76,
from re-PCR_main.cpp:42:
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
re-PCR_main.cpp:395:25: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
395 | auto_ptr<char> rev(FlipSequence(primer.c_str()));
| ^~~~~~~~
/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here
64 | template<typename> class auto_ptr;
| ^~~~~~~~
re-PCR_main.cpp: In member function 'int CMain::STSLookup()':
re-PCR_main.cpp:487:58: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'std::__cxx11::list<ncbi::pcr_tools::ISts*>::size_type' {aka 'long unsigned int'} [-Wformat=]
487 | fprintf(stderr,"= File %s, STSes %u-%u\n",
| ~^
| |
| unsigned int
| %lu
488 | argv[i],fcount+1,fcount+stslist.size());
| ~~~~~~~~~~~~~~~~~~~~~
| |
| std::__cxx11::list<ncbi::pcr_tools::ISts*>::size_type {aka long unsigned int}
re-PCR_main.cpp:501:50: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'std::__cxx11::list<ncbi::pcr_tools::ISts*>::size_type' {aka 'long unsigned int'} [-Wformat=]
501 | fprintf(stderr,"= File %s, STSes %u-%u\n",
| ~^
| |
| unsigned int
| %lu
502 | argv[i],fcount+1,fcount+stslist.size());
| ~~~~~~~~~~~~~~~~~~~~~
| |
| std::__cxx11::list<ncbi::pcr_tools::ISts*>::size_type {aka long unsigned int}
re-PCR_main.cpp: In member function 'int CMain::Execute()':
re-PCR_main.cpp:349:1: warning: control reaches end of non-void function [-Wreturn-type]
349 | }
| ^
rm -f re-PCR
g++ -Wl,-z,relro -Wl,-z,now -L. -o re-PCR ./re-PCR_main.o -lepcr
make[3]: Leaving directory '/build/epcr-2.3.12-1'
make[2]: Leaving directory '/build/epcr-2.3.12-1'
make[1]: Leaving directory '/build/epcr-2.3.12-1'
dh_auto_test -O--no-parallel
create-stamp debian/debhelper-build-stamp
dh_testroot -O--no-parallel
dh_prep -O--no-parallel
debian/rules override_dh_auto_install
make[1]: Entering directory '/build/epcr-2.3.12-1'
# do nothing
make[1]: Leaving directory '/build/epcr-2.3.12-1'
dh_install -O--no-parallel
dh_installdocs -O--no-parallel
dh_installchangelogs -O--no-parallel
dh_installman -O--no-parallel
dh_installsystemduser -O--no-parallel
dh_perl -O--no-parallel
dh_link -O--no-parallel
dh_strip_nondeterminism -O--no-parallel
dh_compress -O--no-parallel
dh_fixperms -O--no-parallel
dh_missing -O--no-parallel
dh_dwz -a -O--no-parallel
dh_strip -a -O--no-parallel
dh_makeshlibs -a -O--no-parallel
dh_shlibdeps -a -O--no-parallel
dh_installdeb -O--no-parallel
dh_gencontrol -O--no-parallel
dh_md5sums -O--no-parallel
dh_builddeb -O--no-parallel
dpkg-deb: building package 'ncbi-epcr-dbgsym' in '../ncbi-epcr-dbgsym_2.3.12-1-9_amd64.deb'.
dpkg-deb: building package 'ncbi-epcr' in '../ncbi-epcr_2.3.12-1-9_amd64.deb'.
dpkg-genbuildinfo --build=binary -O../epcr_2.3.12-1-9_amd64.buildinfo
dpkg-genchanges --build=binary -O../epcr_2.3.12-1-9_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/1730850/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/1730850/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/1730850 and its subdirectories
I: Current time: Wed Jun 12 13:20:35 +14 2024
I: pbuilder-time-stamp: 1718148035