I: pbuilder: network access will be disabled during build I: Current time: Thu Jun 13 00:09:04 +14 2024 I: pbuilder-time-stamp: 1718186944 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fenicsx-performance-tests_0.5.0~git20220731.821823b-1.dsc] I: copying [./fenicsx-performance-tests_0.5.0~git20220731.821823b.orig.tar.gz] I: copying [./fenicsx-performance-tests_0.5.0~git20220731.821823b-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Sep 23 02:05:12 2022 +14 gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fenicsx-performance-tests_0.5.0~git20220731.821823b-1.dsc: no acceptable signature found dpkg-source: info: extracting fenicsx-performance-tests in fenicsx-performance-tests-0.5.0~git20220731.821823b dpkg-source: info: unpacking fenicsx-performance-tests_0.5.0~git20220731.821823b.orig.tar.gz dpkg-source: info: unpacking fenicsx-performance-tests_0.5.0~git20220731.821823b-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying enable_complex_build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4142753/tmp/hooks/D01_modify_environment starting debug: Running on ionos5-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jun 13 00:09 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/4142753/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/4142753/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.15(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DIRSTACK=() DISTRIBUTION=bookworm EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=3100bf87bafe4ae5bcf3c44c43c8f143 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=4142753 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TkNc4fkX/pbuilderrc_BaY9 --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TkNc4fkX/b2 --logfile b2/build.log --extrapackages usrmerge fenicsx-performance-tests_0.5.0~git20220731.821823b-1.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://85.184.249.68:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 24 2023 bash -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 21 2022 cat -rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 21 2022 chown -rwxr-xr-x 1 root root 151152 Sep 21 2022 cp -rwxr-xr-x 1 root root 125640 Jan 6 2023 dash -rwxr-xr-x 1 root root 121904 Sep 21 2022 date -rwxr-xr-x 1 root root 89240 Sep 21 2022 dd -rwxr-xr-x 1 root root 102200 Sep 21 2022 df -rwxr-xr-x 1 root root 151344 Sep 21 2022 dir -rwxr-xr-x 1 root root 88656 Mar 24 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 20 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 20 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 21 2022 echo -rwxr-xr-x 1 root root 41 Jan 25 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 21 2022 false -rwxr-xr-x 1 root root 41 Jan 25 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 24 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 23 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 25 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 20 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 21 2022 ln -rwxr-xr-x 1 root root 53024 Mar 24 2023 login -rwxr-xr-x 1 root root 151344 Sep 21 2022 ls -rwxr-xr-x 1 root root 207168 Mar 24 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 24 2023 more -rwsr-xr-x 1 root root 59704 Mar 24 2023 mount -rwxr-xr-x 1 root root 18744 Mar 24 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 21 2022 mv lrwxrwxrwx 1 root root 8 Dec 20 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd lrwxrwxrwx 1 root root 4 Apr 24 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 21 2022 rm -rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 3 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 6 2023 sed lrwxrwxrwx 1 root root 9 Jun 13 00:09 sh -> /bin/bash -rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 21 2022 stty -rwsr-xr-x 1 root root 72000 Mar 24 2023 su -rwxr-xr-x 1 root root 39824 Sep 21 2022 sync -rwxr-xr-x 1 root root 531984 Apr 7 2023 tar -rwxr-xr-x 1 root root 14520 Nov 3 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 21 2022 touch -rwxr-xr-x 1 root root 35664 Sep 21 2022 true -rwxr-xr-x 1 root root 14568 Mar 23 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 24 2023 umount -rwxr-xr-x 1 root root 43888 Sep 21 2022 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 24 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 20 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/4142753/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake (>= 3.16~), libboost-dev (>= 1.70~), libdolfinx-dev (>= 0.5~), mpi-default-dev, python3-ffcx, xtensor-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake (>= 3.16~); however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev (>= 1.70~); however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfinx-dev (>= 0.5~); however: Package libdolfinx-dev is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-ffcx; however: Package python3-ffcx is not installed. pbuilder-satisfydepends-dummy depends on xtensor-dev; however: Package xtensor-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-12{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} libaec-dev{a} libaec0{a} libamd2{a} libarchive-zip-perl{a} libarchive13{a} libarpack2{a} libarpack2-dev{a} libbasix-dev{a} libbasix0.5{a} libblas-dev{a} libblas3{a} libboost-atomic1.74-dev{a} libboost-atomic1.74.0{a} libboost-chrono-dev{a} libboost-chrono1.74-dev{a} libboost-chrono1.74.0{a} libboost-date-time1.74-dev{a} libboost-date-time1.74.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.74-dev{a} libboost-filesystem1.74.0{a} libboost-iostreams-dev{a} libboost-iostreams1.74-dev{a} libboost-math-dev{a} libboost-math1.74-dev{a} libboost-math1.74.0{a} libboost-mpi-dev{a} libboost-mpi1.74-dev{a} libboost-mpi1.74.0{a} libboost-program-options-dev{a} libboost-program-options1.74-dev{a} libboost-program-options1.74.0{a} libboost-regex1.74-dev{a} libboost-regex1.74.0{a} libboost-serialization-dev{a} libboost-serialization1.74-dev{a} libboost-serialization1.74.0{a} libboost-system1.74-dev{a} libboost-system1.74.0{a} libboost-thread-dev{a} libboost-thread1.74-dev{a} libboost-thread1.74.0{a} libboost-timer-dev{a} libboost-timer1.74-dev{a} libboost-timer1.74.0{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libbtf1{a} libc6-dbg{a} libcamd2{a} libcbor0.8{a} libccolamd2{a} libcholmod3{a} libcolamd2{a} libcombblas1.16.0{a} libcurl4{a} libcurl4-openssl-dev{a} libcxsparse3{a} libdebhelper-perl{a} libdolfinx-dev{a} libdolfinx-real-dev{a} libdolfinx-real0.5{a} libedit2{a} libeigen3-dev{a} libelf1{a} libevent-2.1-7{a} libevent-core-2.1-7{a} libevent-dev{a} libevent-extra-2.1-7{a} libevent-openssl-2.1-7{a} libevent-pthreads-2.1-7{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-mpi-dev{a} libfftw3-mpi3{a} libfftw3-quad3{a} libfftw3-single3{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgfortran-12-dev{a} libgfortran5{a} libhdf5-mpi-dev{a} libhdf5-openmpi-103-1{a} libhdf5-openmpi-cpp-103-1{a} libhdf5-openmpi-dev{a} libhdf5-openmpi-fortran-102{a} libhdf5-openmpi-hl-100{a} libhdf5-openmpi-hl-cpp-100{a} libhdf5-openmpi-hl-fortran-100{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libhypre-2.26.0{a} libhypre-dev{a} libibverbs-dev{a} libibverbs1{a} libicu-dev{a} libicu72{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp25{a} libklu1{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} libldl2{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmetis5{a} libmongoose2{a} libmumps-5.5{a} libmumps-dev{a} libmumps-headers-dev{a} libmunge2{a} libnghttp2-14{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libparpack2{a} libparpack2-dev{a} libpciaccess0{a} libpetsc-real3.18{a} libpetsc-real3.18-dev{a} libpetsc3.18-dev-common{a} libpipeline1{a} libpkgconf3{a} libpmix-dev{a} libpmix2{a} libproc2-0{a} libpsl5{a} libpsm-infinipath1{a} libpsm2-2{a} libpthread-stubs0-dev{a} libptscotch-7.0{a} libptscotch-dev{a} libpugixml-dev{a} libpugixml1v5{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} librbio2{a} librdmacm1{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libscalapack-mpi-dev{a} libscalapack-openmpi-dev{a} libscalapack-openmpi2.2{a} libscotch-7.0{a} libscotch-dev{a} libslepc-real3.18{a} libslepc-real3.18-dev{a} libsliplu1{a} libspqr2{a} libssh2-1{a} libssl-dev{a} libsub-override-perl{a} libsuitesparse-dev{a} libsuitesparseconfig5{a} libsuperlu-dev{a} libsuperlu-dist-dev{a} libsuperlu-dist8{a} libsuperlu5{a} libsz2{a} libtool{a} libtrilinos-amesos-13.2{a} libtrilinos-aztecoo-13.2{a} libtrilinos-aztecoo-dev{a} libtrilinos-epetra-13.2{a} libtrilinos-epetraext-13.2{a} libtrilinos-galeri-13.2{a} libtrilinos-ifpack-13.2{a} libtrilinos-kokkos-13.2{a} libtrilinos-ml-13.2{a} libtrilinos-ml-dev{a} libtrilinos-teuchos-13.2{a} libtrilinos-trilinosss-13.2{a} libtrilinos-trilinosss-dev{a} libtrilinos-triutils-13.2{a} libtrilinos-zoltan-13.2{a} libtrilinos-zoltan-dev{a} libuchardet0{a} libucx0{a} libumfpack5{a} libuv1{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxml2{a} libxml2-dev{a} libxnvctrl0{a} libxsimd-dev{a} libxtensor-dev{a} libyaml-0-2{a} libyaml-dev{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} mpi-default-dev{a} nlohmann-json3-dev{a} ocl-icd-libopencl1{a} ocl-icd-opencl-dev{a} opencl-c-headers{a} opencl-clhpp-headers{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-basix{a} python3-cffi{a} python3-cffi-backend{a} python3-dev{a} python3-distutils{a} python3-ffcx{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-pkg-resources{a} python3-ply{a} python3-pycparser{a} python3-ufl{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} trilinos-dev{a} valgrind{a} valgrind-mpi{a} x11proto-dev{a} xorg-sgml-doctools{a} xtensor-dev{a} xtl-dev{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl gdb gdb-minimal javascript-common ksh ksh93u+m libarchive-cpio-perl libcoarrays-openmpi-dev libgl-dev libgraphblas-dev libldap-common libmail-sendmail-perl libpetsc3.18-dev-examples libsasl2-modules lynx mksh psmisc publicsuffix python3-numba valgrind-dbg wget xauth zsh 0 packages upgraded, 294 newly installed, 0 to remove and 0 not upgraded. Need to get 203 MB of archives. After unpacking 989 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 11 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 libproc2-0 amd64 2:4.0.2-3 [62.8 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 procps amd64 2:4.0.2-3 [709 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 libcbor0.8 amd64 0.8.0-2+b1 [27.4 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 libfido2-1 amd64 1.12.0-2+b1 [77.2 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 openssh-client amd64 1:9.2p1-2 [988 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libarchive13 amd64 3.6.2-1 [343 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-9 [386 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 libjsoncpp25 amd64 1.9.5-4 [78.6 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 librhash0 amd64 1.4.3-3 [134 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 libuv1 amd64 1.44.2-1 [140 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 cmake-data all 3.25.1-1 [2026 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 cmake amd64 3.25.1-1 [8692 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 56 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 58 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 libgfortran-12-dev amd64 12.2.0-14 [834 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 gfortran-12 amd64 12.2.0-14 [10.2 MB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 gfortran amd64 4:12.2.0-3 [1428 B] Get: 69 http://deb.debian.org/debian bookworm/main amd64 libnl-3-200 amd64 3.7.0-0.2+b1 [63.1 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 libnl-route-3-200 amd64 3.7.0-0.2+b1 [185 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 libibverbs1 amd64 44.0-2 [60.7 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 ibverbs-providers amd64 44.0-2 [335 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 icu-devtools amd64 72.1-3 [206 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 libaec0 amd64 1.0.6-1+b1 [21.1 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 libsz2 amd64 1.0.6-1+b1 [7804 B] Get: 76 http://deb.debian.org/debian bookworm/main amd64 libaec-dev amd64 1.0.6-1+b1 [19.9 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 libsuitesparseconfig5 amd64 1:5.12.0+dfsg-2 [23.9 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 libamd2 amd64 1:5.12.0+dfsg-2 [36.2 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get: 81 http://deb.debian.org/debian bookworm/main amd64 libarpack2 amd64 3.8.0-3 [102 kB] Get: 82 http://deb.debian.org/debian bookworm/main amd64 libblas-dev amd64 3.11.0-2 [158 kB] Get: 83 http://deb.debian.org/debian bookworm/main amd64 liblapack-dev amd64 3.11.0-2 [4631 kB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 libarpack2-dev amd64 3.8.0-3 [116 kB] Get: 85 http://deb.debian.org/debian bookworm/main amd64 libbasix0.5 amd64 0.5.1-1+b2 [266 kB] Get: 86 http://deb.debian.org/debian bookworm/main amd64 libpkgconf3 amd64 1.8.1-1 [36.1 kB] Get: 87 http://deb.debian.org/debian bookworm/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB] Get: 88 http://deb.debian.org/debian bookworm/main amd64 pkgconf amd64 1.8.1-1 [25.9 kB] Get: 89 http://deb.debian.org/debian bookworm/main amd64 pkg-config amd64 1.8.1-1 [13.7 kB] Get: 90 http://deb.debian.org/debian bookworm/main amd64 libeigen3-dev all 3.4.0-4 [1041 kB] Get: 91 http://deb.debian.org/debian bookworm/main amd64 libbasix-dev amd64 0.5.1-1+b2 [56.9 kB] Get: 92 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0+ds1-20 [9510 kB] Get: 93 http://deb.debian.org/debian bookworm/main amd64 libboost-atomic1.74.0 amd64 1.74.0+ds1-20 [220 kB] Get: 94 http://deb.debian.org/debian bookworm/main amd64 libboost-atomic1.74-dev amd64 1.74.0+ds1-20 [221 kB] Get: 95 http://deb.debian.org/debian bookworm/main amd64 libboost-chrono1.74.0 amd64 1.74.0+ds1-20 [228 kB] Get: 96 http://deb.debian.org/debian bookworm/main amd64 libboost-chrono1.74-dev amd64 1.74.0+ds1-20 [235 kB] Get: 97 http://deb.debian.org/debian bookworm/main amd64 libboost-chrono-dev amd64 1.74.0.3 [4960 B] Get: 98 http://deb.debian.org/debian bookworm/main amd64 libboost-date-time1.74.0 amd64 1.74.0+ds1-20 [217 kB] Get: 99 http://deb.debian.org/debian bookworm/main amd64 libboost-serialization1.74.0 amd64 1.74.0+ds1-20 [318 kB] Get: 100 http://deb.debian.org/debian bookworm/main amd64 libboost-serialization1.74-dev amd64 1.74.0+ds1-20 [359 kB] Get: 101 http://deb.debian.org/debian bookworm/main amd64 libboost-date-time1.74-dev amd64 1.74.0+ds1-20 [226 kB] Get: 102 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get: 103 http://deb.debian.org/debian bookworm/main amd64 libboost-filesystem1.74.0 amd64 1.74.0+ds1-20 [258 kB] Get: 104 http://deb.debian.org/debian bookworm/main amd64 libboost-system1.74.0 amd64 1.74.0+ds1-20 [218 kB] Get: 105 http://deb.debian.org/debian bookworm/main amd64 libboost-system1.74-dev amd64 1.74.0+ds1-20 [219 kB] Get: 106 http://deb.debian.org/debian bookworm/main amd64 libboost-filesystem1.74-dev amd64 1.74.0+ds1-20 [279 kB] Get: 107 http://deb.debian.org/debian bookworm/main amd64 libboost-filesystem-dev amd64 1.74.0.3 [4368 B] Get: 108 http://deb.debian.org/debian bookworm/main amd64 libboost-regex1.74.0 amd64 1.74.0+ds1-20 [487 kB] Get: 109 http://deb.debian.org/debian bookworm/main amd64 libicu-dev amd64 72.1-3 [10.3 MB] Get: 110 http://deb.debian.org/debian bookworm/main amd64 libboost-regex1.74-dev amd64 1.74.0+ds1-20 [558 kB] Get: 111 http://deb.debian.org/debian bookworm/main amd64 libboost-iostreams1.74-dev amd64 1.74.0+ds1-20 [248 kB] Get: 112 http://deb.debian.org/debian bookworm/main amd64 libboost-iostreams-dev amd64 1.74.0.3 [4316 B] Get: 113 http://deb.debian.org/debian bookworm/main amd64 libboost-math1.74.0 amd64 1.74.0+ds1-20 [490 kB] Get: 114 http://deb.debian.org/debian bookworm/main amd64 libboost-math1.74-dev amd64 1.74.0+ds1-20 [564 kB] Get: 115 http://deb.debian.org/debian bookworm/main amd64 libboost-math-dev amd64 1.74.0.3 [4532 B] Get: 116 http://deb.debian.org/debian bookworm/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-8 [131 kB] Get: 117 http://deb.debian.org/debian bookworm/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-8 [53.6 kB] Get: 118 http://deb.debian.org/debian bookworm/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.2 [168 kB] Get: 119 http://deb.debian.org/debian bookworm/main amd64 libnuma1 amd64 2.0.16-1 [21.0 kB] Get: 120 http://deb.debian.org/debian bookworm/main amd64 libpsm2-2 amd64 11.2.185-2 [180 kB] Get: 121 http://deb.debian.org/debian bookworm/main amd64 librdmacm1 amd64 44.0-2 [68.6 kB] Get: 122 http://deb.debian.org/debian bookworm/main amd64 libfabric1 amd64 1.17.0-3 [627 kB] Get: 123 http://deb.debian.org/debian bookworm/main amd64 libhwloc15 amd64 2.9.0-1 [154 kB] Get: 124 http://deb.debian.org/debian bookworm/main amd64 libmunge2 amd64 0.5.15-2 [19.5 kB] Get: 125 http://deb.debian.org/debian bookworm/main amd64 libpciaccess0 amd64 0.17-2 [51.4 kB] Get: 126 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 127 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 128 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 129 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2 [292 kB] Get: 130 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2 [759 kB] Get: 131 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 132 http://deb.debian.org/debian bookworm/main amd64 libxnvctrl0 amd64 525.85.05-1 [13.3 kB] Get: 133 http://deb.debian.org/debian bookworm/main amd64 ocl-icd-libopencl1 amd64 2.3.1-1 [43.0 kB] Get: 134 http://deb.debian.org/debian bookworm/main amd64 libhwloc-plugins amd64 2.9.0-1 [17.5 kB] Get: 135 http://deb.debian.org/debian bookworm/main amd64 libpmix2 amd64 4.2.2-1+b1 [622 kB] Get: 136 http://deb.debian.org/debian bookworm/main amd64 libucx0 amd64 1.13.1-1 [860 kB] Get: 137 http://deb.debian.org/debian bookworm/main amd64 libopenmpi3 amd64 4.1.4-3+b1 [2422 kB] Get: 138 http://deb.debian.org/debian bookworm/main amd64 libboost-mpi1.74.0 amd64 1.74.0+ds1-20 [257 kB] Get: 139 http://deb.debian.org/debian bookworm/main amd64 openmpi-common all 4.1.4-3 [167 kB] Get: 140 http://deb.debian.org/debian bookworm/main amd64 libnl-3-dev amd64 3.7.0-0.2+b1 [104 kB] Get: 141 http://deb.debian.org/debian bookworm/main amd64 libnl-route-3-dev amd64 3.7.0-0.2+b1 [203 kB] Get: 142 http://deb.debian.org/debian bookworm/main amd64 libibverbs-dev amd64 44.0-2 [633 kB] Get: 143 http://deb.debian.org/debian bookworm/main amd64 libnuma-dev amd64 2.0.16-1 [35.0 kB] Get: 144 http://deb.debian.org/debian bookworm/main amd64 libltdl7 amd64 2.4.7-5 [393 kB] Get: 145 http://deb.debian.org/debian bookworm/main amd64 libltdl-dev amd64 2.4.7-5 [164 kB] Get: 146 http://deb.debian.org/debian bookworm/main amd64 libhwloc-dev amd64 2.9.0-1 [241 kB] Get: 147 http://deb.debian.org/debian bookworm/main amd64 libevent-2.1-7 amd64 2.1.12-stable-8 [180 kB] Get: 148 http://deb.debian.org/debian bookworm/main amd64 libevent-extra-2.1-7 amd64 2.1.12-stable-8 [107 kB] Get: 149 http://deb.debian.org/debian bookworm/main amd64 libevent-openssl-2.1-7 amd64 2.1.12-stable-8 [60.6 kB] Get: 150 http://deb.debian.org/debian bookworm/main amd64 libevent-dev amd64 2.1.12-stable-8 [305 kB] Get: 151 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 152 http://deb.debian.org/debian bookworm/main amd64 libpmix-dev amd64 4.2.2-1+b1 [902 kB] Get: 153 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 154 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 155 http://deb.debian.org/debian bookworm/main amd64 openmpi-bin amd64 4.1.4-3+b1 [226 kB] Get: 156 http://deb.debian.org/debian bookworm/main amd64 libopenmpi-dev amd64 4.1.4-3+b1 [970 kB] Get: 157 http://deb.debian.org/debian bookworm/main amd64 mpi-default-dev amd64 1.14 [5548 B] Get: 158 http://deb.debian.org/debian bookworm/main amd64 libboost-mpi1.74-dev amd64 1.74.0+ds1-20 [277 kB] Get: 159 http://deb.debian.org/debian bookworm/main amd64 libboost-mpi-dev amd64 1.74.0.3 [4420 B] Get: 160 http://deb.debian.org/debian bookworm/main amd64 libboost-program-options1.74.0 amd64 1.74.0+ds1-20 [328 kB] Get: 161 http://deb.debian.org/debian bookworm/main amd64 libboost-program-options1.74-dev amd64 1.74.0+ds1-20 [358 kB] Get: 162 http://deb.debian.org/debian bookworm/main amd64 libboost-program-options-dev amd64 1.74.0.3 [4340 B] Get: 163 http://deb.debian.org/debian bookworm/main amd64 libboost-serialization-dev amd64 1.74.0.3 [4560 B] Get: 164 http://deb.debian.org/debian bookworm/main amd64 libboost-thread1.74.0 amd64 1.74.0+ds1-20 [257 kB] Get: 165 http://deb.debian.org/debian bookworm/main amd64 libboost-thread1.74-dev amd64 1.74.0+ds1-20 [266 kB] Get: 166 http://deb.debian.org/debian bookworm/main amd64 libboost-thread-dev amd64 1.74.0.3 [4356 B] Get: 167 http://deb.debian.org/debian bookworm/main amd64 libboost-timer1.74.0 amd64 1.74.0+ds1-20 [226 kB] Get: 168 http://deb.debian.org/debian bookworm/main amd64 libboost-timer1.74-dev amd64 1.74.0+ds1-20 [229 kB] Get: 169 http://deb.debian.org/debian bookworm/main amd64 libboost-timer-dev amd64 1.74.0.3 [4456 B] Get: 170 http://deb.debian.org/debian bookworm/main amd64 libbtf1 amd64 1:5.12.0+dfsg-2 [25.6 kB] Get: 171 http://deb.debian.org/debian bookworm/main amd64 libc6-dbg amd64 2.36-9 [7431 kB] Get: 172 http://deb.debian.org/debian bookworm/main amd64 libcamd2 amd64 1:5.12.0+dfsg-2 [37.8 kB] Get: 173 http://deb.debian.org/debian bookworm/main amd64 libccolamd2 amd64 1:5.12.0+dfsg-2 [39.7 kB] Get: 174 http://deb.debian.org/debian bookworm/main amd64 libcolamd2 amd64 1:5.12.0+dfsg-2 [32.9 kB] Get: 175 http://deb.debian.org/debian bookworm/main amd64 libmetis5 amd64 5.1.0.dfsg-7 [171 kB] Get: 176 http://deb.debian.org/debian bookworm/main amd64 libcholmod3 amd64 1:5.12.0+dfsg-2 [335 kB] Get: 177 http://deb.debian.org/debian bookworm/main amd64 libcombblas1.16.0 amd64 1.6.2-8 [284 kB] Get: 178 http://deb.debian.org/debian bookworm/main amd64 libcurl4-openssl-dev amd64 7.88.1-9 [487 kB] Get: 179 http://deb.debian.org/debian bookworm/main amd64 libcxsparse3 amd64 1:5.12.0+dfsg-2 [80.7 kB] Get: 180 http://deb.debian.org/debian bookworm/main amd64 libhdf5-openmpi-103-1 amd64 1.10.8+repack1-1 [1279 kB] Get: 181 http://deb.debian.org/debian bookworm/main amd64 libfftw3-double3 amd64 3.3.10-1 [776 kB] Get: 182 http://deb.debian.org/debian bookworm/main amd64 libfftw3-long3 amd64 3.3.10-1 [337 kB] Get: 183 http://deb.debian.org/debian bookworm/main amd64 libfftw3-single3 amd64 3.3.10-1 [806 kB] Get: 184 http://deb.debian.org/debian bookworm/main amd64 libfftw3-mpi3 amd64 3.3.10-1 [62.0 kB] Get: 185 http://deb.debian.org/debian bookworm/main amd64 libptscotch-7.0 amd64 7.0.3-1 [668 kB] Get: 186 http://deb.debian.org/debian bookworm/main amd64 libsuperlu-dist8 amd64 8.1.2+dfsg1-1+b1 [595 kB] Get: 187 http://deb.debian.org/debian bookworm/main amd64 libhypre-2.26.0 amd64 2.26.0-3 [1603 kB] Get: 188 http://deb.debian.org/debian bookworm/main amd64 libklu1 amd64 1:5.12.0+dfsg-2 [87.9 kB] Get: 189 http://deb.debian.org/debian bookworm/main amd64 mpi-default-bin amd64 1.14 [4752 B] Get: 190 http://deb.debian.org/debian bookworm/main amd64 libscalapack-openmpi2.2 amd64 2.2.1-2+b1 [1554 kB] Get: 191 http://deb.debian.org/debian bookworm/main amd64 libmumps-5.5 amd64 5.5.1-1 [1828 kB] Get: 192 http://deb.debian.org/debian bookworm/main amd64 libspqr2 amd64 1:5.12.0+dfsg-2 [82.2 kB] Get: 193 http://deb.debian.org/debian bookworm/main amd64 libsuperlu5 amd64 5.3.0+dfsg1-2+b1 [170 kB] Get: 194 http://deb.debian.org/debian bookworm/main amd64 libscotch-7.0 amd64 7.0.3-1 [407 kB] Get: 195 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-kokkos-13.2 amd64 13.2.0-4 [105 kB] Get: 196 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-teuchos-13.2 amd64 13.2.0-4 [1257 kB] Get: 197 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-epetra-13.2 amd64 13.2.0-4 [441 kB] Get: 198 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-triutils-13.2 amd64 13.2.0-4 [124 kB] Get: 199 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-epetraext-13.2 amd64 13.2.0-4 [443 kB] Get: 200 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-trilinosss-13.2 amd64 13.2.0-4 [88.1 kB] Get: 201 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-amesos-13.2 amd64 13.2.0-4 [117 kB] Get: 202 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-aztecoo-13.2 amd64 13.2.0-4 [210 kB] Get: 203 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-galeri-13.2 amd64 13.2.0-4 [93.5 kB] Get: 204 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-ifpack-13.2 amd64 13.2.0-4 [486 kB] Get: 205 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-zoltan-13.2 amd64 13.2.0-4 [384 kB] Get: 206 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-ml-13.2 amd64 13.2.0-4 [988 kB] Get: 207 http://deb.debian.org/debian bookworm/main amd64 libumfpack5 amd64 1:5.12.0+dfsg-2 [245 kB] Get: 208 http://deb.debian.org/debian bookworm/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get: 209 http://deb.debian.org/debian bookworm/main amd64 libpetsc-real3.18 amd64 3.18.5+dfsg1-1 [6699 kB] Get: 210 http://deb.debian.org/debian bookworm/main amd64 libpugixml1v5 amd64 1.13-0.2 [84.7 kB] Get: 211 http://deb.debian.org/debian bookworm/main amd64 libparpack2 amd64 3.8.0-3 [98.1 kB] Get: 212 http://deb.debian.org/debian bookworm/main amd64 libslepc-real3.18 amd64 3.18.2+dfsg1-2 [1206 kB] Get: 213 http://deb.debian.org/debian bookworm/main amd64 libdolfinx-real0.5 amd64 1:0.5.2-2+b1 [651 kB] Get: 214 http://deb.debian.org/debian bookworm/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 215 http://deb.debian.org/debian bookworm/main amd64 libldl2 amd64 1:5.12.0+dfsg-2 [25.2 kB] Get: 216 http://deb.debian.org/debian bookworm/main amd64 libmongoose2 amd64 1:5.12.0+dfsg-2 [47.6 kB] Get: 217 http://deb.debian.org/debian bookworm/main amd64 librbio2 amd64 1:5.12.0+dfsg-2 [40.8 kB] Get: 218 http://deb.debian.org/debian bookworm/main amd64 libsliplu1 amd64 1:5.12.0+dfsg-2 [50.6 kB] Get: 219 http://deb.debian.org/debian bookworm/main amd64 libsuitesparse-dev amd64 1:5.12.0+dfsg-2 [983 kB] Get: 220 http://deb.debian.org/debian bookworm/main amd64 libscotch-dev amd64 7.0.3-1 [1570 kB] Get: 221 http://deb.debian.org/debian bookworm/main amd64 libptscotch-dev amd64 7.0.3-1 [1342 kB] Get: 222 http://deb.debian.org/debian bookworm/main amd64 libscalapack-openmpi-dev amd64 2.2.1-2+b1 [9540 B] Get: 223 http://deb.debian.org/debian bookworm/main amd64 libscalapack-mpi-dev amd64 2.2.1-2+b1 [4664 B] Get: 224 http://deb.debian.org/debian bookworm/main amd64 libfftw3-quad3 amd64 3.3.10-1 [603 kB] Get: 225 http://deb.debian.org/debian bookworm/main amd64 libfftw3-bin amd64 3.3.10-1 [51.7 kB] Get: 226 http://deb.debian.org/debian bookworm/main amd64 libfftw3-dev amd64 3.3.10-1 [2123 kB] Get: 227 http://deb.debian.org/debian bookworm/main amd64 libfftw3-mpi-dev amd64 3.3.10-1 [66.2 kB] Get: 228 http://deb.debian.org/debian bookworm/main amd64 libssl-dev amd64 3.0.8-1 [2427 kB] Get: 229 http://deb.debian.org/debian bookworm/main amd64 opencl-c-headers all 3.0~2023.02.06-1 [43.6 kB] Get: 230 http://deb.debian.org/debian bookworm/main amd64 opencl-clhpp-headers all 3.0~2023.02.06-1 [44.4 kB] Get: 231 http://deb.debian.org/debian bookworm/main amd64 ocl-icd-opencl-dev amd64 2.3.1-1 [11.6 kB] Get: 232 http://deb.debian.org/debian bookworm/main amd64 libhdf5-openmpi-fortran-102 amd64 1.10.8+repack1-1 [94.0 kB] Get: 233 http://deb.debian.org/debian bookworm/main amd64 libhdf5-openmpi-hl-100 amd64 1.10.8+repack1-1 [67.7 kB] Get: 234 http://deb.debian.org/debian bookworm/main amd64 libhdf5-openmpi-hl-fortran-100 amd64 1.10.8+repack1-1 [44.5 kB] Get: 235 http://deb.debian.org/debian bookworm/main amd64 libhdf5-openmpi-cpp-103-1 amd64 1.10.8+repack1-1 [128 kB] Get: 236 http://deb.debian.org/debian bookworm/main amd64 libhdf5-openmpi-hl-cpp-100 amd64 1.10.8+repack1-1 [25.5 kB] Get: 237 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get: 238 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-2 [290 kB] Get: 239 http://deb.debian.org/debian bookworm/main amd64 libjpeg-dev amd64 1:2.1.5-2 [71.8 kB] Get: 240 http://deb.debian.org/debian bookworm/main amd64 libhdf5-openmpi-dev amd64 1.10.8+repack1-1 [2675 kB] Get: 241 http://deb.debian.org/debian bookworm/main amd64 libhdf5-mpi-dev amd64 1.10.8+repack1-1 [20.0 kB] Get: 242 http://deb.debian.org/debian bookworm/main amd64 libsuperlu-dev amd64 5.3.0+dfsg1-2+b1 [22.4 kB] Get: 243 http://deb.debian.org/debian bookworm/main amd64 libsuperlu-dist-dev amd64 8.1.2+dfsg1-1+b1 [907 kB] Get: 244 http://deb.debian.org/debian bookworm/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 245 http://deb.debian.org/debian bookworm/main amd64 x11proto-dev all 2022.1-1 [599 kB] Get: 246 http://deb.debian.org/debian bookworm/main amd64 libxau-dev amd64 1:1.0.9-1 [22.9 kB] Get: 247 http://deb.debian.org/debian bookworm/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB] Get: 248 http://deb.debian.org/debian bookworm/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 249 http://deb.debian.org/debian bookworm/main amd64 libpthread-stubs0-dev amd64 0.4-1 [5344 B] Get: 250 http://deb.debian.org/debian bookworm/main amd64 libxcb1-dev amd64 1.15-1 [181 kB] Get: 251 http://deb.debian.org/debian bookworm/main amd64 libx11-dev amd64 2:1.8.4-2 [836 kB] Get: 252 http://deb.debian.org/debian bookworm/main amd64 libyaml-dev amd64 0.2.5-1 [64.5 kB] Get: 253 http://deb.debian.org/debian bookworm/main amd64 libpetsc3.18-dev-common all 3.18.5+dfsg1-1 [254 kB] Get: 254 http://deb.debian.org/debian bookworm/main amd64 libhypre-dev amd64 2.26.0-3 [1846 kB] Get: 255 http://deb.debian.org/debian bookworm/main amd64 libmumps-headers-dev all 5.5.1-1 [35.9 kB] Get: 256 http://deb.debian.org/debian bookworm/main amd64 libmumps-dev amd64 5.5.1-1 [1689 kB] Get: 257 http://deb.debian.org/debian bookworm/main amd64 trilinos-dev amd64 13.2.0-4 [12.4 kB] Get: 258 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-aztecoo-dev amd64 13.2.0-4 [50.6 kB] Get: 259 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-trilinosss-dev amd64 13.2.0-4 [33.2 kB] Get: 260 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-ml-dev amd64 13.2.0-4 [117 kB] Get: 261 http://deb.debian.org/debian bookworm/main amd64 libtrilinos-zoltan-dev amd64 13.2.0-4 [33.7 kB] Get: 262 http://deb.debian.org/debian bookworm/main amd64 valgrind amd64 1:3.19.0-1 [14.3 MB] Get: 263 http://deb.debian.org/debian bookworm/main amd64 valgrind-mpi amd64 1:3.19.0-1 [140 kB] Get: 264 http://deb.debian.org/debian bookworm/main amd64 libpetsc-real3.18-dev amd64 3.18.5+dfsg1-1 [6490 kB] Get: 265 http://deb.debian.org/debian bookworm/main amd64 libparpack2-dev amd64 3.8.0-3 [109 kB] Get: 266 http://deb.debian.org/debian bookworm/main amd64 libslepc-real3.18-dev amd64 3.18.2+dfsg1-2 [4180 kB] Get: 267 http://deb.debian.org/debian bookworm/main amd64 libdolfinx-real-dev amd64 1:0.5.2-2+b1 [42.3 kB] Get: 268 http://deb.debian.org/debian bookworm/main amd64 libpugixml-dev amd64 1.13-0.2 [105 kB] Get: 269 http://deb.debian.org/debian bookworm/main amd64 libxml2-dev amd64 2.9.14+dfsg-1.2 [781 kB] Get: 270 http://deb.debian.org/debian bookworm/main amd64 python3-cffi-backend amd64 1.15.1-5+b1 [84.6 kB] Get: 271 http://deb.debian.org/debian bookworm/main amd64 python3-ply all 3.11-5 [65.8 kB] Get: 272 http://deb.debian.org/debian bookworm/main amd64 python3-pycparser all 2.21-1 [78.8 kB] Get: 273 http://deb.debian.org/debian bookworm/main amd64 python3-cffi all 1.15.1-5 [86.2 kB] Get: 274 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6 [1988 kB] Get: 275 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get: 276 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6 [4738 kB] Get: 277 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get: 278 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6 [615 kB] Get: 279 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 280 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get: 281 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 282 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 283 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get: 284 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 285 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get: 286 http://deb.debian.org/debian bookworm/main amd64 python3-ufl all 2022.2.0-2 [175 kB] Get: 287 http://deb.debian.org/debian bookworm/main amd64 python3-basix amd64 0.5.1-1+b2 [144 kB] Get: 288 http://deb.debian.org/debian bookworm/main amd64 python3-ffcx all 1:0.5.0-3 [103 kB] Get: 289 http://deb.debian.org/debian bookworm/main amd64 xtl-dev all 0.7.2-2.1 [89.5 kB] Get: 290 http://deb.debian.org/debian bookworm/main amd64 nlohmann-json3-dev all 3.11.2-2 [259 kB] Get: 291 http://deb.debian.org/debian bookworm/main amd64 libxtensor-dev amd64 0.24.3-1 [189 kB] Get: 292 http://deb.debian.org/debian bookworm/main amd64 libxsimd-dev amd64 8.1.0-7 [88.8 kB] Get: 293 http://deb.debian.org/debian bookworm/main amd64 libdolfinx-dev amd64 1:0.5.2-2+b1 [155 kB] Get: 294 http://deb.debian.org/debian bookworm/main amd64 xtensor-dev all 0.24.3-1 [5372 B] Fetched 203 MB in 18s (11.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19912 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_amd64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../3-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_amd64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20346 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_amd64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../001-libproc2-0_2%3a4.0.2-3_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.2-3_amd64.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../005-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../008-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.22.4-10_amd64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.38.1-5+b1_amd64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../011-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.11.2-2_amd64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../013-libbsd0_0.11.7-2_amd64.deb ... Unpacking libbsd0:amd64 (0.11.7-2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../014-libedit2_3.1-20221030-2_amd64.deb ... Unpacking libedit2:amd64 (3.1-20221030-2) ... Selecting previously unselected package libcbor0.8:amd64. Preparing to unpack .../015-libcbor0.8_0.8.0-2+b1_amd64.deb ... Unpacking libcbor0.8:amd64 (0.8.0-2+b1) ... Selecting previously unselected package libfido2-1:amd64. Preparing to unpack .../016-libfido2-1_1.12.0-2+b1_amd64.deb ... Unpacking libfido2-1:amd64 (1.12.0-2+b1) ... Selecting previously unselected package openssh-client. Preparing to unpack .../017-openssh-client_1%3a9.2p1-2_amd64.deb ... Unpacking openssh-client (1:9.2p1-2) ... Selecting previously unselected package m4. Preparing to unpack .../018-m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../019-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../020-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../021-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../022-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../023-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../024-libxml2_2.9.14+dfsg-1.2_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.2) ... Selecting previously unselected package libarchive13:amd64. Preparing to unpack .../025-libarchive13_3.6.2-1_amd64.deb ... Unpacking libarchive13:amd64 (3.6.2-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../026-libbrotli1_1.0.9-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b6) ... 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Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libevent-extra-2.1-7:amd64 (2.1.12-stable-8) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libxau-dev:amd64 (1:1.0.9-1) ... Setting up libcolamd2:amd64 (1:5.12.0+dfsg-2) ... Setting up libyaml-dev:amd64 (0.2.5-1) ... Setting up libtool (2.4.7-5) ... Setting up libarchive13:amd64 (3.6.2-1) ... Setting up libboost-chrono-dev:amd64 (1.74.0.3) ... Setting up libfftw3-bin (3.3.10-1) ... Setting up libboost-math-dev:amd64 (1.74.0.3) ... Setting up libedit2:amd64 (3.1-20221030-2) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libxtensor-dev:amd64 (0.24.3-1) ... Setting up libpugixml-dev:amd64 (1.13-0.2) ... Setting up libaec-dev:amd64 (1.0.6-1+b1) ... Setting up libarpack2:amd64 (3.8.0-3) ... Setting up libjpeg-dev:amd64 (1:2.1.5-2) ... Setting up libsuperlu5:amd64 (5.3.0+dfsg1-2+b1) ... Setting up libevent-openssl-2.1-7:amd64 (2.1.12-stable-8) ... Setting up libgfortran-12-dev:amd64 (12.2.0-14) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up pkgconf:amd64 (1.8.1-1) ... Setting up xtensor-dev (0.24.3-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnuma-dev:amd64 (2.0.16-1) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.2+b1) ... Setting up libsliplu1:amd64 (1:5.12.0+dfsg-2) ... Setting up dh-autoreconf (20) ... Setting up libltdl-dev:amd64 (2.4.7-5) ... Setting up libcamd2:amd64 (1:5.12.0+dfsg-2) ... Setting up libmongoose2:amd64 (1:5.12.0+dfsg-2) ... Setting up libxdmcp-dev:amd64 (1:1.1.2-3) ... Setting up gfortran-12 (12.2.0-14) ... Setting up libxml2-dev:amd64 (2.9.14+dfsg-1.2) ... Setting up libbasix0.5:amd64 (0.5.1-1+b2) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up opencl-clhpp-headers (3.0~2023.02.06-1) ... Setting up libevent-dev (2.1.12-stable-8) ... Setting up liblapack-dev:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libeigen3-dev (3.4.0-4) ... Setting up libboost-timer1.74-dev:amd64 (1.74.0+ds1-20) ... Setting up pkg-config:amd64 (1.8.1-1) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up ocl-icd-opencl-dev:amd64 (2.3.1-1) ... Setting up libboost-serialization1.74-dev:amd64 (1.74.0+ds1-20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up libboost-regex1.74-dev:amd64 (1.74.0+ds1-20) ... Setting up libnl-3-dev:amd64 (3.7.0-0.2+b1) ... Setting up groff-base (1.22.4-10) ... Setting up libklu1:amd64 (1:5.12.0+dfsg-2) ... Setting up libccolamd2:amd64 (1:5.12.0+dfsg-2) ... Setting up libcurl4:amd64 (7.88.1-9) ... Setting up libx11-6:amd64 (2:1.8.4-2) ... Setting up libhwloc-dev:amd64 (2.9.0-1) ... Setting up libsuperlu-dev:amd64 (5.3.0+dfsg1-2+b1) ... Setting up libbasix-dev:amd64 (0.5.1-1+b2) ... Setting up libfftw3-dev:amd64 (3.3.10-1) ... Setting up libcholmod3:amd64 (1:5.12.0+dfsg-2) ... Setting up libboost-timer-dev:amd64 (1.74.0.3) ... Setting up libspqr2:amd64 (1:5.12.0+dfsg-2) ... Setting up libibverbs1:amd64 (44.0-2) ... Setting up libarpack2-dev:amd64 (3.8.0-3) ... Setting up libxcb1-dev:amd64 (1.15-1) ... Setting up ibverbs-providers:amd64 (44.0-2) ... Setting up openssh-client (1:9.2p1-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up libx11-dev:amd64 (2:1.8.4-2) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:12.2.0-3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libxnvctrl0:amd64 (525.85.05-1) ... Setting up libboost-iostreams1.74-dev:amd64 (1.74.0+ds1-20) ... Setting up libnl-route-3-dev:amd64 (3.7.0-0.2+b1) ... Setting up libboost-date-time1.74-dev:amd64 (1.74.0+ds1-20) ... Setting up libumfpack5:amd64 (1:5.12.0+dfsg-2) ... Setting up libcurl4-openssl-dev:amd64 (7.88.1-9) ... Setting up libboost-serialization-dev:amd64 (1.74.0.3) ... Setting up cmake (3.25.1-1) ... Setting up libboost-thread1.74-dev:amd64 (1.74.0+ds1-20) ... Setting up libboost-thread-dev:amd64 (1.74.0.3) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up librdmacm1:amd64 (44.0-2) ... Setting up python3.11 (3.11.2-6) ... Setting up libucx0:amd64 (1.13.1-1) ... Setting up libpython3.11:amd64 (3.11.2-6) ... Setting up libsuitesparse-dev:amd64 (1:5.12.0+dfsg-2) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up libboost-iostreams-dev:amd64 (1.74.0.3) ... Setting up libibverbs-dev:amd64 (44.0-2) ... Setting up libhwloc-plugins:amd64 (2.9.0-1) ... Setting up libpython3.11-dev:amd64 (3.11.2-6) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-cffi-backend:amd64 (1.15.1-5+b1) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up libfabric1:amd64 (1.17.0-3) ... Setting up libpython3-dev:amd64 (3.11.2-1+b1) ... Setting up libpmix2:amd64 (4.2.2-1+b1) ... Setting up python3.11-dev (3.11.2-6) ... Setting up libopenmpi3:amd64 (4.1.4-3+b1) ... Setting up python3-ply (3.11-5) ... Setting up libboost-mpi1.74.0 (1.74.0+ds1-20) ... Setting up libfftw3-mpi3:amd64 (3.3.10-1) ... Setting up python3-pycparser (2.21-1) ... Setting up libtrilinos-teuchos-13.2:amd64 (13.2.0-4) ... Setting up libtrilinos-epetra-13.2:amd64 (13.2.0-4) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up libtrilinos-aztecoo-13.2:amd64 (13.2.0-4) ... Setting up libtrilinos-aztecoo-dev:amd64 (13.2.0-4) ... Setting up libtrilinos-triutils-13.2:amd64 (13.2.0-4) ... Setting up libpmix-dev:amd64 (4.2.2-1+b1) ... Setting up openmpi-bin (4.1.4-3+b1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up python3-basix (0.5.1-1+b2) ... Setting up libhdf5-openmpi-103-1:amd64 (1.10.8+repack1-1) ... Setting up libptscotch-7.0:amd64 (7.0.3-1) ... Setting up libparpack2:amd64 (3.8.0-3) ... Setting up libcombblas1.16.0:amd64 (1.6.2-8) ... Setting up python3-ufl (2022.2.0-2) ... Setting up libsuperlu-dist8:amd64 (8.1.2+dfsg1-1+b1) ... Setting up python3-cffi (1.15.1-5) ... Setting up libfftw3-mpi-dev:amd64 (3.3.10-1) ... Setting up mpi-default-bin (1.14) ... Setting up libtrilinos-zoltan-13.2:amd64 (13.2.0-4) ... Setting up libsuperlu-dist-dev:amd64 (8.1.2+dfsg1-1+b1) ... Setting up python3-ffcx (1:0.5.0-3) ... Setting up libhdf5-openmpi-fortran-102:amd64 (1.10.8+repack1-1) ... Setting up libtrilinos-zoltan-dev:amd64 (13.2.0-4) ... Setting up libtrilinos-epetraext-13.2:amd64 (13.2.0-4) ... Setting up libtrilinos-galeri-13.2:amd64 (13.2.0-4) ... Setting up libhdf5-openmpi-hl-100:amd64 (1.10.8+repack1-1) ... Setting up libopenmpi-dev:amd64 (4.1.4-3+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up libhdf5-openmpi-cpp-103-1:amd64 (1.10.8+repack1-1) ... Setting up libhdf5-openmpi-hl-cpp-100:amd64 (1.10.8+repack1-1) ... Setting up libscalapack-openmpi2.2:amd64 (2.2.1-2+b1) ... Setting up libhdf5-openmpi-hl-fortran-100:amd64 (1.10.8+repack1-1) ... Setting up libhypre-2.26.0:amd64 (2.26.0-3) ... Setting up libmumps-5.5:amd64 (5.5.1-1) ... Setting up libscalapack-openmpi-dev:amd64 (2.2.1-2+b1) ... Setting up mpi-default-dev (1.14) ... Setting up libtrilinos-amesos-13.2:amd64 (13.2.0-4) ... Setting up libscalapack-mpi-dev:amd64 (2.2.1-2+b1) ... Setting up libhdf5-openmpi-dev (1.10.8+repack1-1) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-mpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libmumps-dev:amd64 (5.5.1-1) ... Setting up libscotch-dev (7.0.3-1) ... Setting up libboost-mpi1.74-dev (1.74.0+ds1-20) ... Setting up libparpack2-dev:amd64 (3.8.0-3) ... Setting up libhypre-dev:amd64 (2.26.0-3) ... Setting up libptscotch-dev (7.0.3-1) ... Setting up libboost-mpi-dev (1.74.0.3) ... Setting up libtrilinos-ifpack-13.2:amd64 (13.2.0-4) ... Setting up libhdf5-mpi-dev (1.10.8+repack1-1) ... Setting up libpetsc3.18-dev-common (3.18.5+dfsg1-1) ... Setting up libtrilinos-ml-13.2:amd64 (13.2.0-4) ... Setting up libtrilinos-ml-dev:amd64 (13.2.0-4) ... Setting up libpetsc-real3.18:amd64 (3.18.5+dfsg1-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.18.5 to provide /usr/lib/x86_64-linux-gnu/libpetsc.so.3.18 (libpetsc.so.3.18) in auto mode Setting up libslepc-real3.18 (3.18.2+dfsg1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.18.2 to provide /usr/lib/x86_64-linux-gnu/libslepc.so.3.18 (libslepc.so.3.18) in auto mode Setting up libdolfinx-real0.5:amd64 (1:0.5.2-2+b1) ... Setting up libpetsc-real3.18-dev:amd64 (3.18.5+dfsg1-1) ... update-alternatives: error: no alternatives for petsc update-alternatives: using /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real to provide /usr/lib/petsc (petsc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.18.5 to provide /usr/lib/x86_64-linux-gnu/libpetsc_real.so (libpetsc_real.so) in auto mode update-alternatives: using /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real to provide /usr/lib/petscdir/3.18 (petsc3.18) in auto mode Setting up libslepc-real3.18-dev (3.18.2+dfsg1-2) ... update-alternatives: error: no alternatives for slepc update-alternatives: using /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real to provide /usr/lib/slepc (slepc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.18.2 to provide /usr/lib/x86_64-linux-gnu/libslepc_real.so (libslepc_real.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real to provide /usr/lib/slepcdir/3.18 (slepc3.18) in auto mode Setting up libdolfinx-real-dev:amd64 (1:0.5.2-2+b1) ... Setting up libdolfinx-dev:amd64 (1:0.5.2-2+b1) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... usrmerge is already the newest version (35). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/4142753/tmp/hooks/A99_set_merged_usr starting Re-configuring usrmerge... removed '/etc/unsupported-skip-usrmerge-conversion' The system has been successfully converted. I: user script /srv/workspace/pbuilder/4142753/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../fenicsx-performance-tests_0.5.0~git20220731.821823b-1_source.changes dpkg-buildpackage: info: source package fenicsx-performance-tests dpkg-buildpackage: info: source version 0.5.0~git20220731.821823b-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake --sourcedirectory=src dh_auto_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_clean -O--buildsystem=cmake -O--sourcedirectory=src debian/rules binary dh binary --buildsystem=cmake --sourcedirectory=src dh_update_autotools_config -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf -O--buildsystem=cmake -O--sourcedirectory=src debian/rules override_dh_auto_configure make[1]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b' dh_auto_configure -- -D CMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF ../src -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer;filesystem -- Found boost_headers 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.74.0 -- Found boost_timer 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.74.0 -- [x] libboost_timer.so.1.74.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: chrono;headers -- Found boost_chrono 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_chrono-1.74.0 -- [x] libboost_chrono.so.1.74.0 -- [ ] libboost_chrono.a -- Adding boost_chrono dependencies: headers -- Found boost_filesystem 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_filesystem-1.74.0 -- [x] libboost_filesystem.so.1.74.0 -- [ ] libboost_filesystem.a -- Adding boost_filesystem dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: timer filesystem -- Performing Test arch_native_supported -- Performing Test arch_native_supported - Success -- Found Python3: /usr/bin/python3 (found version "3.11.2") found components: Interpreter -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.8") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'SLEPc;slepc' -- Found Boost 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS program_options -- Found boost_program_options 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_program_options-1.74.0 -- [x] libboost_program_options.so.1.74.0 -- [ ] libboost_program_options.a -- Adding boost_program_options dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: program_options -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b' dh_auto_build -O--buildsystem=cmake -O--sourcedirectory=src cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu' /usr/bin/cmake -S"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -B"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu/CMakeFiles" "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/depend make[3]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu' [ 10%] Generating Poisson.c [ 20%] Generating Elasticity.c ffcx /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/Poisson.py ffcx /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/Elasticity.py cd "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu/CMakeFiles/dolfinx-scaling-test.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/build make[3]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu' [ 30%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o [ 40%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o [ 50%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o [ 60%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.5.2\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong 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/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -c "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/mesh.cpp" /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.5.2\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -c "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/elasticity_problem.cpp" [ 80%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.5.2\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -c "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/poisson_problem.cpp" /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.5.2\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o -c "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/mem.cpp" [ 90%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o /usr/bin/cc -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.5.2\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o -MF CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o.d -o CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o -c "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu/Elasticity.c" /usr/bin/cc -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.5.2\" -DHAS_PTSCOTCH -DHAS_SLEPC -DXTENSOR_USE_XSIMD -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -MF CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o.d -o CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -c "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu/Poisson.c" [100%] Linking CXX executable dolfinx-scaling-test /usr/bin/cmake -E cmake_link_script CMakeFiles/dolfinx-scaling-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro "CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o" "CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o" -o dolfinx-scaling-test /usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.5.2 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.13 /usr/lib/x86_64-linux-gnu/libbasix.so.0.5.1 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.74.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/slepcdir/slepc3.18/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/lib/libpetsc_real.so make[3]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu' [100%] Built target dolfinx-scaling-test make[2]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu/CMakeFiles" 0 make[1]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b' debian/tests/run-dolfinx-scaling-test -p /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu ==== elasticity weak scaling (3 processes with ndofs=10000) ==== 2024-06-13 00:15:06.196 ( 0.636s) [RANK: 0 ] utils.cpp:612 INFO| Compute partition of cells across ranks 2024-06-13 00:15:06.196 ( 0.636s) [RANK: 0 ] graphbuild.cpp:533 INFO| Building mesh dual graph 2024-06-13 00:15:06.196 ( 0.636s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2024-06-13 00:15:06.247 ( 0.687s) [RANK: 0 ] graphbuild.cpp:89 INFO| Build nonlocal part of mesh dual graph 2024-06-13 00:15:06.259 ( 0.699s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:15:06.260 ( 0.700s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:15:06.260 ( 0.700s) [RANK: 0 ] graphbuild.cpp:203 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 2024-06-13 00:15:06.324 ( 0.764s) [RANK: 0 ] graphbuild.cpp:545 INFO| Graph edges (local: 66332, non-local: 962) 2024-06-13 00:15:06.324 ( 0.764s) [RANK: 0 ] partitioners.cpp:316 INFO| Compute graph partition using PT-SCOTCH 2024-06-13 00:15:19.021 ( 13.461s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2024-06-13 00:15:19.043 ( 13.483s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2024-06-13 00:15:19.093 ( 13.533s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2024-06-13 00:15:19.178 ( 13.618s) [RANK: 0 ] ordering.cpp:202 INFO| GPS pseudo-diameter:(119) 16668-1182 2024-06-13 00:15:19.191 ( 13.631s) [RANK: 0 ] Topology.cpp:923 INFO| Create topology 2024-06-13 00:15:19.211 ( 13.651s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2024-06-13 00:15:19.235 ( 13.675s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2024-06-13 00:15:19.515 ( 13.955s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:15:19.539 ( 13.979s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:15:19.571 ( 14.011s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:15:19.603 ( 14.043s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:15:19.653 ( 14.093s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:15:19.683 ( 14.123s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:15:19.747 ( 14.187s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2024-06-13 00:15:19.763 ( 14.203s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2024-06-13 00:15:19.851 ( 14.291s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:15:19.867 ( 14.307s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:15:19.923 ( 14.363s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2024-06-13 00:15:19.939 ( 14.379s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2024-06-13 00:15:19.939 ( 14.379s) [RANK: 0 ] MPI.h:368 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 2024-06-13 00:15:19.971 ( 14.411s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:15:20.003 ( 14.443s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:15:20.003 ( 14.443s) [RANK: 0 ] MPI.h:500 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 UnitCube (24x19x19) to be refined 0 times 2024-06-13 00:15:20.087 ( 14.527s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 2 2024-06-13 00:15:20.111 ( 14.551s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:15:20.127 ( 14.567s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:15:20.295 ( 14.735s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:15:20.323 ( 14.763s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:15:20.373 ( 14.813s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2024-06-13 00:15:20.373 ( 14.813s) [RANK: 0 ]topologycomputation.cpp:650 INFO| Computing mesh connectivity 2 - 3 from transpose. 2024-06-13 00:15:20.379 ( 14.819s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 0 2024-06-13 00:15:20.381 ( 14.821s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:15:20.411 ( 14.851s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:15:20.471 ( 14.911s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:15:20.491 ( 14.931s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:15:20.551 ( 14.991s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2024-06-13 00:15:20.563 ( 15.003s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2024-06-13 00:15:20.699 ( 15.139s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:15:20.727 ( 15.167s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:15:20.875 ( 15.315s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2024-06-13 00:15:20.876 ( 15.316s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2024-06-13 00:15:20.876 ( 15.316s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 0 2024-06-13 00:15:20.876 ( 15.316s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2024-06-13 00:15:21.181 ( 15.621s) [RANK: 0 ] SparsityPattern.cpp:389 INFO| Column ghost size increased from 212 to 562 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.5.2 dolfinx hash: debian_1:0.5.2-2+b1 ufl hash: da4f06cb7b24fd71359bedaeafbca801c698ea33 petsc version: Petsc Release Version 3.18.5, Feb 27, 2023 Problem type: elasticity Scaling type: weak Num processes: 3 Num cells: 51984 (52 thousand) Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- 2024-06-13 00:15:21.537 ( 15.978s) [RANK: 0 ] petsc.cpp:677 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = -1. -1. -1. Threshold scaling factor for each level not specified = 1. AGG specific options Number of levels to square graph 1 Number smoothing steps 1 Complexity: grid = 1.0704 operator = 1.29179 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 3 MPI processes type: bjacobi number of blocks = 3 Local solver information for first block is in the following KSP and PC objects on rank 0: Use -mg_coarse_ksp_view ::ascii_info_detail to display information for all blocks KSP Object: (mg_coarse_sub_) 1 MPI process type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI process type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.0394 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=240, cols=240, bs=6 package used to perform factorization: petsc total: nonzeros=55080, allocated nonzeros=55080 using I-node routines: found 63 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=240, cols=240, bs=6 total: nonzeros=52992, allocated nonzeros=52992 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 71 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=240, cols=240, bs=6 total: nonzeros=52992, allocated nonzeros=52992 total number of mallocs used during MatSetValues calls=0 using I-node (on process 0) routines: found 71 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev eigenvalue targets used: min 0.294556, max 3.24011 eigenvalues provided (min 2.59195e-06, max 2.94556) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=1872, cols=1872, bs=6 total: nonzeros=312192, allocated nonzeros=312192 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 204 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev eigenvalue targets used: min 0.257453, max 2.83199 eigenvalues provided (min 0.0699861, max 2.57453) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3344 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3344 nodes, limit used is 5 [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh | 1 13.906208 13.906208 Build dofmap data | 2 0.324138 0.648275 Build sparsity | 1 0.057683 0.057683 Compute connectivity 2-3 | 1 0.000794 0.000794 Compute dof reordering map | 2 0.000236 0.000471 Compute entities of dim = 2 | 1 0.294292 0.294292 Compute graph partition (SCOTCH) | 1 12.672614 12.672614 Compute local part of mesh dual graph | 2 0.070428 0.140857 Compute local-to-local map | 1 0.000536 0.000536 Compute non-local part of mesh dual graph | 1 0.105127 0.105127 Compute-local-to-global links for global/local adjacency list | 1 0.000560 0.000560 Distribute AdjacencyList nodes to destination ranks | 1 0.096003 0.096003 Distribute row-wise data (scalable) | 1 0.140250 0.140250 Extract partition boundaries from SCOTCH graph | 1 0.000905 0.000905 GPS: create_level_structure | 2 0.002577 0.020615 Get SCOTCH graph data | 1 0.000017 0.000017 Gibbs-Poole-Stockmeyer ordering | 1 0.023143 0.023143 Init MPI | 1 0.607633 0.607633 Init PETSc | 1 0.024491 0.024491 Init dofmap from element dofmap | 2 0.002018 0.004037 Init logging | 1 0.000077 0.000077 PETSc Krylov solver | 1 1.181199 1.181199 SCOTCH: call SCOTCH_dgraphBuild | 1 0.015061 0.015061 SCOTCH: call SCOTCH_dgraphHalo | 1 0.045372 0.045372 SCOTCH: call SCOTCH_dgraphPart | 1 12.627245 12.627245 SparsityPattern::assemble | 1 0.094215 0.094215 Topology: create | 1 0.460588 0.460588 Topology: determine shared index ownership | 1 0.162330 0.162330 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.009958 0.009958 ZZZ Assemble matrix | 1 0.287693 0.287693 ZZZ Assemble vector | 1 0.018948 0.018948 ZZZ Create Mesh | 1 13.906369 13.906369 ZZZ Create RHS function | 1 0.137992 0.137992 ZZZ Create boundary conditions | 1 0.155745 0.155745 ZZZ Create facets and facet->cell connectivity | 1 0.295177 0.295177 ZZZ Create forms | 1 0.000118 0.000118 ZZZ Create near-nullspace | 1 0.020962 0.020962 ZZZ FunctionSpace | 1 0.393417 0.393417 ZZZ Solve | 1 1.185164 1.185164 *** Number of Krylov iterations: 21 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processors, by pbuilder2 Thu Jun 13 00:15:22 2024 Using Petsc Release Version 3.18.5, Feb 27, 2023 Max Max/Min Avg Total Time (sec): 1.654e+01 1.000 1.654e+01 Objects: 4.630e+02 1.004 4.617e+02 Flops: 2.266e+08 1.093 2.161e+08 6.482e+08 Flops/sec: 1.370e+07 1.093 1.307e+07 3.920e+07 MPI Msg Count: 8.190e+02 1.044 7.967e+02 2.390e+03 MPI Msg Len (bytes): 6.535e+06 1.336 7.329e+03 1.752e+07 MPI Reductions: 6.370e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.6537e+01 100.0% 6.4823e+08 100.0% 2.390e+03 100.0% 7.329e+03 100.0% 6.190e+02 97.2% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 103 1.0 1.2168e-01 2.5 0.00e+00 0.0 1.4e+02 4.0e+00 1.0e+02 1 0 6 0 16 1 0 6 0 17 0 BuildTwoSidedF 86 1.0 1.2118e-01 2.5 0.00e+00 0.0 1.1e+02 4.0e+04 8.6e+01 1 0 5 26 14 1 0 5 26 14 0 MatMult 217 1.0 2.9088e-01 1.0 1.23e+08 1.1 1.3e+03 5.5e+03 2.0e+00 2 55 55 42 0 2 55 55 42 0 1221 MatMultAdd 44 1.0 5.0741e-02 1.4 1.05e+07 1.1 1.8e+02 1.4e+03 0.0e+00 0 5 7 1 0 0 5 7 1 0 596 MatMultTranspose 44 1.0 4.2571e-02 1.1 1.05e+07 1.1 1.9e+02 1.4e+03 2.0e+00 0 5 8 1 0 0 5 8 1 0 711 MatSolve 22 0.0 4.8429e-03 0.0 2.42e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 499 MatLUFactorSym 1 1.0 2.8685e-03 137.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 5.4546e-03 1969.2 7.25e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1329 MatConvert 1 1.0 8.2403e-04 1.3 0.00e+00 0.0 1.2e+01 7.0e+02 1.0e+00 0 0 1 0 0 0 0 1 0 0 0 MatScale 4 1.0 1.3712e-03 1.1 4.75e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1002 MatResidual 44 1.0 4.9912e-02 1.0 2.40e+07 1.1 2.6e+02 5.3e+03 0.0e+00 0 11 11 8 0 0 11 11 8 0 1378 MatAssemblyBegin 59 1.0 1.5385e-01 1.7 0.00e+00 0.0 1.1e+02 4.0e+04 3.0e+01 1 0 5 26 5 1 0 5 26 5 0 MatAssemblyEnd 59 1.0 1.1440e-01 1.1 9.65e+04 1.7 0.0e+00 0.0e+00 9.6e+01 1 0 0 0 15 1 0 0 0 16 2 MatGetRowIJ 1 0.0 7.2151e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 2 1.0 1.0671e-02 1.0 0.00e+00 0.0 1.0e+01 4.4e+04 2.8e+01 0 0 0 3 4 0 0 0 3 5 0 MatGetOrdering 1 0.0 1.7578e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 1.5104e-02 1.0 1.39e+05 1.0 2.4e+02 7.3e+02 9.7e+01 0 0 10 1 15 0 0 10 1 16 27 MatZeroEntries 3 1.0 9.0838e-04 3.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 4.9326e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 4 1.0 3.0618e-02 1.3 1.14e+05 1.0 0.0e+00 0.0e+00 1.2e+01 0 0 0 0 2 0 0 0 0 2 11 MatTranspose 10 1.0 1.3384e-02 1.1 0.00e+00 0.0 9.0e+01 2.1e+03 3.2e+01 0 0 4 1 5 0 0 4 1 5 0 MatMatMultSym 9 1.0 1.1925e-01 1.1 0.00e+00 0.0 5.1e+01 1.2e+04 2.8e+01 1 0 2 3 4 1 0 2 3 5 0 MatMatMultNum 3 1.0 2.1484e-02 1.0 6.55e+06 1.1 1.5e+01 2.5e+04 3.0e+00 0 3 1 2 0 0 3 1 2 0 874 MatPtAPSymbolic 3 1.0 2.6779e-01 1.0 0.00e+00 0.0 9.9e+01 3.6e+04 2.1e+01 2 0 4 20 3 2 0 4 20 3 0 MatPtAPNumeric 3 1.0 2.7614e-01 1.0 6.30e+07 1.3 3.0e+01 9.7e+04 1.5e+01 2 25 1 17 2 2 25 1 17 2 594 MatGetLocalMat 9 1.0 1.0092e-02 2.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 9 1.0 3.1112e-02 1.3 0.00e+00 0.0 1.2e+02 3.1e+04 1.0e+00 0 0 5 22 0 0 0 5 22 0 0 VecMDot 20 1.0 3.6431e-03 3.2 1.18e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 3 0 1 0 0 3 962 VecTDot 42 1.0 2.1156e-03 1.7 8.56e+05 1.0 0.0e+00 0.0e+00 4.2e+01 0 0 0 0 7 0 0 0 0 7 1191 VecNorm 44 1.0 3.0520e-03 1.1 6.84e+05 1.0 0.0e+00 0.0e+00 4.4e+01 0 0 0 0 7 0 0 0 0 7 662 VecScale 22 1.0 1.1262e-04 1.1 1.18e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 3113 VecCopy 136 1.0 1.1004e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 203 1.0 6.6001e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 44 1.0 1.4902e-03 1.2 8.78e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1734 VecAYPX 284 1.0 5.8803e-03 1.2 2.30e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1158 VecAXPBYCZ 88 1.0 1.8556e-03 1.1 2.36e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 3779 VecMAXPY 22 1.0 6.6942e-04 1.1 1.40e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 6189 VecAssemblyBegin 57 1.0 7.9447e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 5.6e+01 0 0 0 0 9 0 0 0 0 9 0 VecAssemblyEnd 57 1.0 8.5542e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 198 1.0 5.9469e-03 1.2 1.06e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 531 VecScatterBegin 363 1.0 6.0214e-03 1.1 0.00e+00 0.0 1.9e+03 4.2e+03 8.0e+00 0 0 79 46 1 0 0 79 46 1 0 VecScatterEnd 363 1.0 4.6085e-02 1.4 1.47e+04 2.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1 VecNormalize 22 1.0 2.1078e-03 3.0 3.54e+05 1.0 0.0e+00 0.0e+00 2.2e+01 0 0 0 0 3 0 0 0 0 4 499 SFSetGraph 35 1.0 2.8431e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 17 1.0 1.4940e-03 1.2 0.00e+00 0.0 1.6e+02 5.0e+02 1.7e+01 0 0 7 0 3 0 0 7 0 3 0 SFBcastBegin 15 1.0 1.3994e-04 1.2 0.00e+00 0.0 9.0e+01 6.4e+02 0.0e+00 0 0 4 0 0 0 0 4 0 0 0 SFBcastEnd 15 1.0 1.0710e-04 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 4 1.0 8.4247e-05 1.1 0.00e+00 0.0 1.8e+01 5.5e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 SFReduceEnd 4 1.0 4.5115e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFPack 382 1.0 2.2673e-03 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 382 1.0 3.0911e-04 1.2 1.47e+04 2.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 102 KSPSetUp 7 1.0 6.4826e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 KSPSolve 1 1.0 3.7344e-01 1.0 1.43e+08 1.1 1.6e+03 4.6e+03 7.0e+01 2 64 65 41 11 2 64 65 41 11 1118 KSPGMRESOrthog 20 1.0 4.2323e-03 2.5 2.36e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 3 0 1 0 0 3 1657 PCSetUp_GAMG+ 1 1.0 8.0602e-01 1.0 8.40e+07 1.2 8.0e+02 1.1e+04 5.0e+02 5 35 34 52 79 5 35 34 52 81 279 PCGAMGCreateG 2 1.0 4.5807e-02 1.0 4.97e+04 1.0 6.0e+01 2.9e+03 4.4e+01 0 0 3 1 7 0 0 3 1 7 3 GAMG Coarsen 2 1.0 1.6185e-02 1.0 1.39e+05 1.0 2.4e+02 7.3e+02 9.7e+01 0 0 10 1 15 0 0 10 1 16 25 GAMG MIS/Agg 2 1.0 1.5138e-02 1.0 1.39e+05 1.0 2.4e+02 7.3e+02 9.7e+01 0 0 10 1 15 0 0 10 1 16 27 PCGAMGProl 2 1.0 1.9275e-02 1.0 0.00e+00 0.0 1.9e+02 1.8e+03 1.9e+02 0 0 8 2 30 0 0 8 2 30 0 GAMG Prol-col 2 1.0 6.9502e-03 1.0 0.00e+00 0.0 1.8e+02 6.6e+02 1.7e+02 0 0 8 1 27 0 0 8 1 27 0 GAMG Prol-lift 2 1.0 1.1299e-02 1.0 0.00e+00 0.0 1.2e+01 1.8e+04 1.0e+01 0 0 1 1 2 0 0 1 1 2 0 PCGAMGOptProl 2 1.0 1.8228e-01 1.0 2.09e+07 1.1 1.9e+02 8.6e+03 8.2e+01 1 9 8 9 13 1 9 8 9 13 331 GAMG smooth 2 1.0 1.2887e-01 1.1 7.09e+06 1.1 4.8e+01 2.0e+04 2.6e+01 1 3 2 6 4 1 3 2 6 4 158 PCGAMGCreateL 2 1.0 5.4804e-01 1.0 6.29e+07 1.3 1.2e+02 5.6e+04 7.7e+01 3 25 5 39 12 3 25 5 39 12 299 GAMG PtAP 2 1.0 5.3634e-01 1.0 6.29e+07 1.3 9.6e+01 6.6e+04 2.4e+01 3 25 4 36 4 3 25 4 36 4 305 GAMG Reduce 1 1.0 1.1936e-02 1.0 0.00e+00 0.0 2.5e+01 1.9e+04 5.3e+01 0 0 1 3 8 0 0 1 3 9 0 PCGAMG Gal l00 1 1.0 3.5708e-01 1.0 3.66e+07 1.0 4.8e+01 8.5e+04 1.2e+01 2 16 2 23 2 2 16 2 23 2 299 PCGAMG Opt l00 1 1.0 9.0717e-02 1.0 5.11e+06 1.0 2.4e+01 3.3e+04 1.0e+01 1 2 1 4 2 1 2 1 4 2 166 PCGAMG Gal l01 1 1.0 1.7934e-01 1.0 2.63e+07 1.8 4.8e+01 4.7e+04 1.2e+01 1 9 2 13 2 1 9 2 13 2 317 PCGAMG Opt l01 1 1.0 8.4263e-03 1.0 1.61e+06 1.6 2.4e+01 8.3e+03 1.0e+01 0 1 1 1 2 0 1 1 1 2 445 PCSetUp 2 1.0 8.1460e-01 1.0 8.40e+07 1.2 8.0e+02 1.1e+04 5.0e+02 5 36 34 52 79 5 36 34 52 81 285 PCSetUpOnBlocks 22 1.0 8.7236e-03 36.7 7.25e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 831 PCApply 22 1.0 3.2892e-01 1.0 1.23e+08 1.1 1.4e+03 4.3e+03 6.0e+00 2 55 60 35 1 2 55 60 35 1 1088 --- Event Stage 1: Unknown ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 12 12 Matrix 106 106 Matrix Coarsen 2 2 Matrix Null Space 1 1 Index Set 75 75 IS L to G Mapping 6 6 Vector 187 187 Star Forest Graph 43 43 Krylov Solver 7 7 Preconditioner 7 7 Viewer 3 2 PetscRandom 2 2 Distributed Mesh 4 4 Discrete System 4 4 Weak Form 4 4 --- Event Stage 1: Unknown ======================================================================================================================== Average time to get PetscTime(): 6.58e-08 Average time for MPI_Barrier(): 2.7264e-06 Average time for zero size MPI_Send(): 1.66333e-06 #PETSc Option Table entries: --ndofs 10000 --problem_type elasticity --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2023-03-05 14:16:00 on reproducible Machine characteristics: Linux-5.10.0-21-amd64-x86_64-with-glibc2.36 Using PETSc directory: /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/trilinos -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/x86_64-linux-gnu/12 -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -ltrilinos_ml -lfftw3 -lfftw3_mpi -llapack -lblas -ltrilinos_zoltan -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lgfortran -lm -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 --problem_type elasticity --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 4 unused database options. They are: Option left: name:--ndofs value: 10000 Option left: name:--problem_type value: elasticity Option left: name:--scaling_type value: weak Option left: name:-mg_levels_esteig_ksp_type value: cg 2024-06-13 00:15:22.788 ( 17.228s) [RANK: 0 ] loguru.cpp:526 INFO| atexit ==== elasticity strong scaling (3 processes with ndofs=30000) ==== 2024-06-13 00:15:23.460 ( 0.356s) [RANK: 0 ] utils.cpp:612 INFO| Compute partition of cells across ranks 2024-06-13 00:15:23.460 ( 0.356s) [RANK: 0 ] graphbuild.cpp:533 INFO| Building mesh dual graph 2024-06-13 00:15:23.460 ( 0.356s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2024-06-13 00:15:23.493 ( 0.389s) [RANK: 0 ] graphbuild.cpp:89 INFO| Build nonlocal part of mesh dual graph 2024-06-13 00:15:23.512 ( 0.408s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:15:23.513 ( 0.409s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:15:23.513 ( 0.409s) [RANK: 0 ] graphbuild.cpp:203 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 2024-06-13 00:15:23.523 ( 0.419s) [RANK: 0 ] graphbuild.cpp:545 INFO| Graph edges (local: 66332, non-local: 962) 2024-06-13 00:15:23.523 ( 0.419s) [RANK: 0 ] partitioners.cpp:316 INFO| Compute graph partition using PT-SCOTCH 2024-06-13 00:15:34.345 ( 11.241s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2024-06-13 00:15:34.367 ( 11.263s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2024-06-13 00:15:34.418 ( 11.314s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2024-06-13 00:15:34.486 ( 11.382s) [RANK: 0 ] ordering.cpp:202 INFO| GPS pseudo-diameter:(120) 1409-16652 2024-06-13 00:15:34.500 ( 11.396s) [RANK: 0 ] Topology.cpp:923 INFO| Create topology 2024-06-13 00:15:34.511 ( 11.407s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2024-06-13 00:15:34.543 ( 11.439s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2024-06-13 00:15:34.820 ( 11.716s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:15:34.847 ( 11.743s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:15:34.879 ( 11.775s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:15:34.911 ( 11.807s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:15:34.958 ( 11.854s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:15:34.971 ( 11.867s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:15:35.003 ( 11.899s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2024-06-13 00:15:35.011 ( 11.907s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2024-06-13 00:15:35.075 ( 11.971s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:15:35.091 ( 11.987s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:15:35.131 ( 12.027s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2024-06-13 00:15:35.143 ( 12.039s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2024-06-13 00:15:35.143 ( 12.039s) [RANK: 0 ] MPI.h:368 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 2024-06-13 00:15:35.167 ( 12.063s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:15:35.183 ( 12.079s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:15:35.183 ( 12.079s) [RANK: 0 ] MPI.h:500 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 UnitCube (24x19x19) to be refined 0 times 2024-06-13 00:15:35.272 ( 12.167s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 2 2024-06-13 00:15:35.313 ( 12.209s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:15:35.327 ( 12.223s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:15:35.487 ( 12.383s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:15:35.503 ( 12.399s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:15:35.538 ( 12.434s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2024-06-13 00:15:35.538 ( 12.434s) [RANK: 0 ]topologycomputation.cpp:650 INFO| Computing mesh connectivity 2 - 3 from transpose. 2024-06-13 00:15:35.550 ( 12.446s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 0 2024-06-13 00:15:35.553 ( 12.449s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:15:35.579 ( 12.475s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:15:35.615 ( 12.511s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:15:35.643 ( 12.539s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:15:35.679 ( 12.575s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2024-06-13 00:15:35.691 ( 12.587s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2024-06-13 00:15:35.791 ( 12.687s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:15:35.819 ( 12.715s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:15:35.880 ( 12.776s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2024-06-13 00:15:35.881 ( 12.777s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2024-06-13 00:15:35.881 ( 12.777s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 0 2024-06-13 00:15:35.882 ( 12.778s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2024-06-13 00:15:35.960 ( 12.856s) [RANK: 0 ] SparsityPattern.cpp:389 INFO| Column ghost size increased from 199 to 549 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.5.2 dolfinx hash: debian_1:0.5.2-2+b1 ufl hash: da4f06cb7b24fd71359bedaeafbca801c698ea33 petsc version: Petsc Release Version 3.18.5, Feb 27, 2023 Problem type: elasticity Scaling type: strong Num processes: 3 Num cells: 51984 (52 thousand) Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- 2024-06-13 00:15:36.322 ( 13.218s) [RANK: 0 ] petsc.cpp:677 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = -1. -1. -1. Threshold scaling factor for each level not specified = 1. AGG specific options Number of levels to square graph 1 Number smoothing steps 1 Complexity: grid = 1.0674 operator = 1.27192 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 3 MPI processes type: bjacobi number of blocks = 3 Local solver information for first block is in the following KSP and PC objects on rank 0: Use -mg_coarse_ksp_view ::ascii_info_detail to display information for all blocks KSP Object: (mg_coarse_sub_) 1 MPI process type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI process type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.05488 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=228, cols=228, bs=6 package used to perform factorization: petsc total: nonzeros=49824, allocated nonzeros=49824 using I-node routines: found 52 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=228, cols=228, bs=6 total: nonzeros=47232, allocated nonzeros=47232 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 68 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=228, cols=228, bs=6 total: nonzeros=47232, allocated nonzeros=47232 total number of mallocs used during MatSetValues calls=0 using I-node (on process 0) routines: found 68 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev eigenvalue targets used: min 0.248092, max 2.72901 eigenvalues provided (min 1.84365e-06, max 2.48092) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=1794, cols=1794, bs=6 total: nonzeros=293076, allocated nonzeros=293076 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 182 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev eigenvalue targets used: min 0.257801, max 2.83581 eigenvalues provided (min 0.0738042, max 2.57801) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3364 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3364 nodes, limit used is 5 [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh | 1 11.817823 11.817823 Build dofmap data | 2 0.241458 0.482917 Build sparsity | 1 0.029326 0.029326 Compute connectivity 2-3 | 1 0.010059 0.010059 Compute dof reordering map | 2 0.000247 0.000494 Compute entities of dim = 2 | 1 0.273769 0.273769 Compute graph partition (SCOTCH) | 1 10.806566 10.806566 Compute local part of mesh dual graph | 2 0.057950 0.115900 Compute local-to-local map | 1 0.000520 0.000520 Compute non-local part of mesh dual graph | 1 0.030174 0.030174 Compute-local-to-global links for global/local adjacency list | 1 0.001193 0.001193 Distribute AdjacencyList nodes to destination ranks | 1 0.100632 0.100632 Distribute row-wise data (scalable) | 1 0.116506 0.116506 Extract partition boundaries from SCOTCH graph | 1 0.001423 0.001423 GPS: create_level_structure | 2 0.000615 0.002461 Get SCOTCH graph data | 1 0.000031 0.000031 Gibbs-Poole-Stockmeyer ordering | 1 0.011821 0.011821 Init MPI | 1 0.352187 0.352187 Init PETSc | 1 0.008623 0.008623 Init dofmap from element dofmap | 2 0.002322 0.004643 Init logging | 1 0.000058 0.000058 PETSc Krylov solver | 1 3.382852 3.382852 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000595 0.000595 SCOTCH: call SCOTCH_dgraphHalo | 1 0.035872 0.035872 SCOTCH: call SCOTCH_dgraphPart | 1 10.770569 10.770569 SparsityPattern::assemble | 1 0.028106 0.028106 Topology: create | 1 0.486911 0.486911 Topology: determine shared index ownership | 1 0.183157 0.183157 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.003335 0.003335 ZZZ Assemble matrix | 1 0.301475 0.301475 ZZZ Assemble vector | 1 0.028038 0.028038 ZZZ Create Mesh | 1 11.818007 11.818007 ZZZ Create RHS function | 1 0.045105 0.045105 ZZZ Create boundary conditions | 1 0.014905 0.014905 ZZZ Create facets and facet->cell connectivity | 1 0.277098 0.277098 ZZZ Create forms | 1 0.000165 0.000165 ZZZ Create near-nullspace | 1 0.025428 0.025428 ZZZ FunctionSpace | 1 0.324710 0.324710 ZZZ Solve | 1 3.391250 3.391250 *** Number of Krylov iterations: 21 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processors, by pbuilder2 Thu Jun 13 00:15:39 2024 Using Petsc Release Version 3.18.5, Feb 27, 2023 Max Max/Min Avg Total Time (sec): 1.629e+01 1.001 1.629e+01 Objects: 4.630e+02 1.004 4.617e+02 Flops: 2.295e+08 1.141 2.121e+08 6.363e+08 Flops/sec: 1.409e+07 1.141 1.302e+07 3.907e+07 MPI Msg Count: 8.170e+02 1.044 7.947e+02 2.384e+03 MPI Msg Len (bytes): 6.540e+06 1.484 6.692e+03 1.595e+07 MPI Reductions: 6.360e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.6285e+01 100.0% 6.3630e+08 100.0% 2.384e+03 100.0% 6.692e+03 100.0% 6.180e+02 97.2% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 103 1.0 2.9167e-01 1.8 0.00e+00 0.0 1.4e+02 4.0e+00 1.0e+02 1 0 6 0 16 1 0 6 0 17 0 BuildTwoSidedF 86 1.0 2.8598e-01 1.8 0.00e+00 0.0 1.1e+02 3.4e+04 8.6e+01 1 0 5 24 14 1 0 5 24 14 0 MatMult 217 1.0 1.3514e+00 1.0 1.25e+08 1.1 1.3e+03 5.2e+03 2.0e+00 8 55 56 44 0 8 55 56 44 0 260 MatMultAdd 44 1.0 1.4519e-01 1.3 1.07e+07 1.1 1.8e+02 1.2e+03 0.0e+00 1 5 7 1 0 1 5 7 1 0 206 MatMultTranspose 44 1.0 1.8294e-01 1.1 1.07e+07 1.1 1.9e+02 1.2e+03 2.0e+00 1 5 8 1 0 1 5 8 1 0 164 MatSolve 22 0.0 5.2341e-03 0.0 2.19e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 418 MatLUFactorSym 1 1.0 3.2775e-03 157.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 1.3725e-02 4520.8 7.06e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 515 MatConvert 1 1.0 1.8385e-03 1.2 0.00e+00 0.0 1.2e+01 6.9e+02 1.0e+00 0 0 1 0 0 0 0 1 0 0 0 MatScale 4 1.0 1.7302e-03 1.3 4.86e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 786 MatResidual 44 1.0 2.2161e-01 1.1 2.43e+07 1.1 2.6e+02 5.0e+03 0.0e+00 1 11 11 8 0 1 11 11 8 0 307 MatAssemblyBegin 59 1.0 3.0144e-01 1.4 0.00e+00 0.0 1.1e+02 3.4e+04 3.0e+01 2 0 5 24 5 2 0 5 24 5 0 MatAssemblyEnd 59 1.0 1.4435e-01 1.1 8.85e+04 2.3 0.0e+00 0.0e+00 9.6e+01 1 0 0 0 15 1 0 0 0 16 1 MatGetRowIJ 1 0.0 7.4520e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 2 1.0 2.6892e-02 1.0 0.00e+00 0.0 1.0e+01 4.3e+04 2.8e+01 0 0 0 3 4 0 0 0 3 5 0 MatGetOrdering 1 0.0 1.7613e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 3.2909e-02 1.0 1.39e+05 1.0 2.3e+02 7.3e+02 9.6e+01 0 0 10 1 15 0 0 10 1 16 12 MatZeroEntries 3 1.0 8.7764e-04 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 8.1781e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 4 1.0 3.5324e-02 1.3 1.15e+05 1.0 0.0e+00 0.0e+00 1.2e+01 0 0 0 0 2 0 0 0 0 2 10 MatTranspose 10 1.0 3.5691e-02 1.2 0.00e+00 0.0 9.0e+01 2.0e+03 3.2e+01 0 0 4 1 5 0 0 4 1 5 0 MatMatMultSym 9 1.0 1.4481e-01 1.1 0.00e+00 0.0 5.1e+01 1.1e+04 2.8e+01 1 0 2 4 4 1 0 2 4 5 0 MatMatMultNum 3 1.0 3.0902e-02 1.0 6.65e+06 1.1 1.5e+01 2.4e+04 3.0e+00 0 3 1 2 0 0 3 1 2 0 600 MatPtAPSymbolic 3 1.0 4.4129e-01 1.0 0.00e+00 0.0 9.9e+01 3.1e+04 2.1e+01 3 0 4 19 3 3 0 4 19 3 0 MatPtAPNumeric 3 1.0 5.5912e-01 1.0 6.31e+07 1.4 3.0e+01 7.7e+04 1.5e+01 3 25 1 15 2 3 25 1 15 2 281 MatGetLocalMat 9 1.0 1.3915e-02 2.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 9 1.0 2.4406e-02 2.2 0.00e+00 0.0 1.2e+02 2.9e+04 1.0e+00 0 0 5 21 0 0 0 5 21 0 0 VecMDot 20 1.0 7.4416e-02 1.6 1.18e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 3 0 1 0 0 3 47 VecTDot 42 1.0 1.0693e-01 1.3 8.48e+05 1.0 0.0e+00 0.0e+00 4.2e+01 1 0 0 0 7 1 0 0 0 7 24 VecNorm 44 1.0 1.2912e-01 1.9 6.78e+05 1.0 0.0e+00 0.0e+00 4.4e+01 1 0 0 0 7 1 0 0 0 7 16 VecScale 22 1.0 2.8591e-04 1.6 1.18e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1223 VecCopy 136 1.0 9.3692e-03 5.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 203 1.0 1.0576e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 44 1.0 1.1854e-02 2.5 8.69e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 218 VecAYPX 284 1.0 2.6806e-02 2.3 2.29e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 254 VecAXPBYCZ 88 1.0 4.9343e-03 1.1 2.36e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1418 VecMAXPY 22 1.0 2.1735e-03 1.2 1.40e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1902 VecAssemblyBegin 57 1.0 8.8461e-03 14.9 0.00e+00 0.0 0.0e+00 0.0e+00 5.6e+01 0 0 0 0 9 0 0 0 0 9 0 VecAssemblyEnd 57 1.0 1.0022e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 198 1.0 2.0947e-02 2.1 1.06e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 150 VecScatterBegin 363 1.0 2.4740e-02 2.3 0.00e+00 0.0 1.9e+03 4.0e+03 8.0e+00 0 0 80 47 1 0 0 80 47 1 0 VecScatterEnd 363 1.0 9.7286e-01 1.2 1.23e+04 2.1 0.0e+00 0.0e+00 0.0e+00 6 0 0 0 0 6 0 0 0 0 0 VecNormalize 22 1.0 6.3950e-02 4.6 3.54e+05 1.0 0.0e+00 0.0e+00 2.2e+01 0 0 0 0 3 0 0 0 0 4 16 SFSetGraph 35 1.0 2.6400e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 17 1.0 1.4615e-02 7.8 0.00e+00 0.0 1.6e+02 4.7e+02 1.7e+01 0 0 7 0 3 0 0 7 0 3 0 SFBcastBegin 14 1.0 1.1929e-04 1.1 0.00e+00 0.0 8.4e+01 6.3e+02 0.0e+00 0 0 4 0 0 0 0 4 0 0 0 SFBcastEnd 14 1.0 1.1839e-04 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 4 1.0 1.0016e-04 1.2 0.00e+00 0.0 1.8e+01 5.2e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 SFReduceEnd 4 1.0 4.8200e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFPack 381 1.0 3.8368e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 381 1.0 4.7536e-03 8.7 1.23e+04 2.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 6 KSPSetUp 7 1.0 1.3027e-03 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 KSPSolve 1 1.0 1.7302e+00 1.0 1.43e+08 1.1 1.6e+03 4.4e+03 7.0e+01 11 65 65 42 11 11 65 65 42 11 239 KSPGMRESOrthog 20 1.0 7.6694e-02 1.5 2.36e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 3 0 1 0 0 3 91 PCSetUp_GAMG+ 1 1.0 1.6426e+00 1.0 8.43e+07 1.3 8.0e+02 1.0e+04 5.0e+02 10 34 33 50 79 10 34 33 50 81 132 PCGAMGCreateG 2 1.0 8.3258e-02 1.1 5.06e+04 1.1 6.0e+01 2.8e+03 4.4e+01 0 0 3 1 7 0 0 3 1 7 2 GAMG Coarsen 2 1.0 3.3963e-02 1.0 1.39e+05 1.0 2.3e+02 7.3e+02 9.6e+01 0 0 10 1 15 0 0 10 1 16 12 GAMG MIS/Agg 2 1.0 3.2953e-02 1.0 1.39e+05 1.0 2.3e+02 7.3e+02 9.6e+01 0 0 10 1 15 0 0 10 1 16 12 PCGAMGProl 2 1.0 8.3626e-02 1.0 0.00e+00 0.0 1.9e+02 1.8e+03 1.9e+02 1 0 8 2 30 1 0 8 2 30 0 GAMG Prol-col 2 1.0 4.1118e-02 1.0 0.00e+00 0.0 1.8e+02 6.8e+02 1.7e+02 0 0 8 1 27 0 0 8 1 28 0 GAMG Prol-lift 2 1.0 2.1499e-02 1.0 0.00e+00 0.0 1.2e+01 1.9e+04 1.0e+01 0 0 1 1 2 0 0 1 1 2 0 PCGAMGOptProl 2 1.0 4.1667e-01 1.0 2.12e+07 1.1 1.9e+02 8.1e+03 8.2e+01 3 9 8 10 13 3 9 8 10 13 143 GAMG smooth 2 1.0 1.4094e-01 1.0 7.19e+06 1.1 4.8e+01 1.9e+04 2.6e+01 1 3 2 6 4 1 3 2 6 4 143 PCGAMGCreateL 2 1.0 1.0156e+00 1.0 6.29e+07 1.4 1.2e+02 4.8e+04 7.7e+01 6 25 5 36 12 6 25 5 36 12 154 GAMG PtAP 2 1.0 9.8763e-01 1.0 6.29e+07 1.4 9.6e+01 5.6e+04 2.4e+01 6 25 4 33 4 6 25 4 33 4 159 GAMG Reduce 1 1.0 2.8030e-02 1.0 0.00e+00 0.0 2.5e+01 1.8e+04 5.3e+01 0 0 1 3 8 0 0 1 3 9 0 PCGAMG Gal l00 1 1.0 6.4992e-01 1.0 3.78e+07 1.1 4.8e+01 7.1e+04 1.2e+01 4 17 2 22 2 4 17 2 22 2 163 PCGAMG Opt l00 1 1.0 1.0181e-01 1.0 5.08e+06 1.0 2.4e+01 3.2e+04 1.0e+01 1 2 1 5 2 1 2 1 5 2 148 PCGAMG Gal l01 1 1.0 3.3783e-01 1.0 2.51e+07 2.2 4.8e+01 4.0e+04 1.2e+01 2 8 2 12 2 2 8 2 12 2 151 PCGAMG Opt l01 1 1.0 1.4864e-02 1.0 1.56e+06 1.7 2.4e+01 6.8e+03 1.0e+01 0 1 1 1 2 0 1 1 1 2 237 PCSetUp 2 1.0 1.6600e+00 1.0 8.43e+07 1.2 8.0e+02 1.0e+04 5.0e+02 10 35 33 50 79 10 35 33 50 81 135 PCSetUpOnBlocks 22 1.0 1.7454e-02 61.7 7.06e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 405 PCApply 22 1.0 1.4054e+00 1.0 1.23e+08 1.1 1.4e+03 4.0e+03 6.0e+00 8 56 60 36 1 8 56 60 36 1 252 --- Event Stage 1: Unknown ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 12 12 Matrix 106 106 Matrix Coarsen 2 2 Matrix Null Space 1 1 Index Set 75 75 IS L to G Mapping 6 6 Vector 187 187 Star Forest Graph 43 43 Krylov Solver 7 7 Preconditioner 7 7 Viewer 3 2 PetscRandom 2 2 Distributed Mesh 4 4 Discrete System 4 4 Weak Form 4 4 --- Event Stage 1: Unknown ======================================================================================================================== Average time to get PetscTime(): 7.53e-08 Average time for MPI_Barrier(): 0.00150687 Average time for zero size MPI_Send(): 1.8429e-05 #PETSc Option Table entries: --ndofs 30000 --problem_type elasticity --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2023-03-05 14:16:00 on reproducible Machine characteristics: Linux-5.10.0-21-amd64-x86_64-with-glibc2.36 Using PETSc directory: /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/trilinos -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/x86_64-linux-gnu/12 -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -ltrilinos_ml -lfftw3 -lfftw3_mpi -llapack -lblas -ltrilinos_zoltan -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lgfortran -lm -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 30000 --problem_type elasticity --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 4 unused database options. They are: Option left: name:--ndofs value: 30000 Option left: name:--problem_type value: elasticity Option left: name:--scaling_type value: strong Option left: name:-mg_levels_esteig_ksp_type value: cg 2024-06-13 00:15:39.977 ( 16.873s) [RANK: 0 ] loguru.cpp:526 INFO| atexit ==== poisson weak scaling (3 processes with ndofs=10000) ==== 2024-06-13 00:15:41.246 ( 0.661s) [RANK: 0 ] utils.cpp:612 INFO| Compute partition of cells across ranks 2024-06-13 00:15:41.247 ( 0.661s) [RANK: 0 ] graphbuild.cpp:533 INFO| Building mesh dual graph 2024-06-13 00:15:41.247 ( 0.661s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2024-06-13 00:15:41.454 ( 0.869s) [RANK: 0 ] graphbuild.cpp:89 INFO| Build nonlocal part of mesh dual graph 2024-06-13 00:15:41.485 ( 0.899s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:15:41.485 ( 0.900s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:15:41.485 ( 0.900s) [RANK: 0 ] graphbuild.cpp:203 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 2024-06-13 00:15:41.529 ( 0.944s) [RANK: 0 ] graphbuild.cpp:545 INFO| Graph edges (local: 210000, non-local: 1800) 2024-06-13 00:15:41.529 ( 0.944s) [RANK: 0 ] partitioners.cpp:316 INFO| Compute graph partition using PT-SCOTCH 2024-06-13 00:16:01.921 ( 21.335s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2024-06-13 00:16:01.943 ( 21.358s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2024-06-13 00:16:02.016 ( 21.431s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2024-06-13 00:16:02.250 ( 21.664s) [RANK: 0 ] ordering.cpp:202 INFO| GPS pseudo-diameter:(165) 51956-792 2024-06-13 00:16:02.286 ( 21.701s) [RANK: 0 ] Topology.cpp:923 INFO| Create topology 2024-06-13 00:16:02.327 ( 21.742s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2024-06-13 00:16:02.359 ( 21.774s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2024-06-13 00:16:02.582 ( 21.997s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:16:02.595 ( 22.010s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:16:02.614 ( 22.028s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:16:02.643 ( 22.058s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:16:02.662 ( 22.076s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:16:02.665 ( 22.080s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:16:02.666 ( 22.080s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2024-06-13 00:16:02.666 ( 22.080s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2024-06-13 00:16:02.666 ( 22.081s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:16:02.666 ( 22.081s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:16:02.685 ( 22.100s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2024-06-13 00:16:02.685 ( 22.100s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2024-06-13 00:16:02.685 ( 22.100s) [RANK: 0 ] MPI.h:368 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 2024-06-13 00:16:02.686 ( 22.101s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:16:02.686 ( 22.101s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:16:02.686 ( 22.101s) [RANK: 0 ] MPI.h:500 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 UnitCube (30x30x30) to be refined 0 times 2024-06-13 00:16:02.696 ( 22.111s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 2 2024-06-13 00:16:02.748 ( 22.163s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:16:02.748 ( 22.163s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:16:02.894 ( 22.309s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:16:02.894 ( 22.309s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:16:02.923 ( 22.337s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2024-06-13 00:16:02.923 ( 22.338s) [RANK: 0 ]topologycomputation.cpp:650 INFO| Computing mesh connectivity 2 - 3 from transpose. 2024-06-13 00:16:02.932 ( 22.346s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 0 2024-06-13 00:16:02.947 ( 22.362s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:16:02.949 ( 22.363s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:16:02.949 ( 22.364s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:16:02.949 ( 22.364s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:16:02.949 ( 22.364s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2024-06-13 00:16:02.949 ( 22.364s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2024-06-13 00:16:02.950 ( 22.365s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:16:02.950 ( 22.365s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:16:02.966 ( 22.380s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2024-06-13 00:16:02.970 ( 22.384s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2024-06-13 00:16:02.970 ( 22.384s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 0 2024-06-13 00:16:02.971 ( 22.385s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2024-06-13 00:16:03.046 ( 22.460s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2024-06-13 00:16:03.046 ( 22.460s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 2 2024-06-13 00:16:03.046 ( 22.461s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:16:03.067 ( 22.482s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:16:03.132 ( 22.547s) [RANK: 0 ] SparsityPattern.cpp:389 INFO| Column ghost size increased from 447 to 1259 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.5.2 dolfinx hash: debian_1:0.5.2-2+b1 ufl hash: da4f06cb7b24fd71359bedaeafbca801c698ea33 petsc version: Petsc Release Version 3.18.5, Feb 27, 2023 Problem type: poisson Scaling type: weak Num processes: 3 Num cells: 162000 (162 thousand) Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- 2024-06-13 00:16:03.399 ( 22.813s) [RANK: 0 ] petsc.cpp:677 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical SpGEMM type cusparse linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=29791, cols=29791 total: nonzeros=424171, allocated nonzeros=424171 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh | 1 21.462602 21.462602 Build dofmap data | 2 0.027391 0.054782 Build sparsity | 1 0.027782 0.027782 Compute connectivity 2-3 | 1 0.014235 0.014235 Compute dof reordering map | 2 0.002957 0.005914 Compute entities of dim = 2 | 1 0.222682 0.222682 Compute graph partition (SCOTCH) | 1 20.353801 20.353801 Compute local part of mesh dual graph | 2 0.211459 0.422918 Compute local-to-local map | 1 0.005075 0.005075 Compute non-local part of mesh dual graph | 1 0.150476 0.150476 Compute-local-to-global links for global/local adjacency list | 1 0.001865 0.001865 Distribute AdjacencyList nodes to destination ranks | 1 0.139290 0.139290 Distribute row-wise data (scalable) | 1 0.002777 0.002777 Extract partition boundaries from SCOTCH graph | 1 0.009212 0.009212 GPS: create_level_structure | 5 0.003416 0.017080 Get SCOTCH graph data | 1 0.000022 0.000022 Gibbs-Poole-Stockmeyer ordering | 1 0.037634 0.037634 Init MPI | 1 0.720551 0.720551 Init PETSc | 1 0.005444 0.005444 Init dofmap from element dofmap | 2 0.008337 0.016673 Init logging | 1 0.000075 0.000075 PETSc Krylov solver | 1 1.116563 1.116563 SCOTCH: call SCOTCH_dgraphBuild | 1 0.031785 0.031785 SCOTCH: call SCOTCH_dgraphHalo | 1 0.047127 0.047127 SCOTCH: call SCOTCH_dgraphPart | 1 20.271987 20.271987 SparsityPattern::assemble | 1 0.076138 0.076138 Topology: create | 1 0.478309 0.478309 Topology: determine shared index ownership | 1 0.232726 0.232726 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.026794 0.026794 ZZZ Assemble | 1 0.433768 0.433768 ZZZ Assemble matrix | 1 0.177308 0.177308 ZZZ Assemble vector | 1 0.025934 0.025934 ZZZ Create Mesh | 1 21.462823 21.462823 ZZZ Create RHS function | 1 0.086676 0.086676 ZZZ Create boundary conditions | 1 0.020027 0.020027 ZZZ Create facets and facet->cell connectivity | 1 0.231763 0.231763 ZZZ FunctionSpace | 1 0.042189 0.042189 ZZZ Solve | 1 1.129216 1.129216 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processors, by pbuilder2 Thu Jun 13 00:16:04 2024 Using Petsc Release Version 3.18.5, Feb 27, 2023 Max Max/Min Avg Total Time (sec): 2.332e+01 1.000 2.332e+01 Objects: 3.200e+01 1.000 3.200e+01 Flops: 3.514e+06 1.029 3.449e+06 1.035e+07 Flops/sec: 1.507e+05 1.029 1.479e+05 4.437e+05 MPI Msg Count: 2.800e+01 1.000 2.800e+01 8.400e+01 MPI Msg Len (bytes): 1.901e+05 1.202 6.352e+03 5.335e+05 MPI Reductions: 6.700e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 2.3322e+01 100.0% 1.0347e+07 100.0% 8.400e+01 100.0% 6.352e+03 100.0% 4.900e+01 73.1% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 4 1.0 9.0660e-02 8.0 0.00e+00 0.0 1.8e+01 4.0e+00 4.0e+00 0 0 21 0 6 0 0 21 0 8 0 BuildTwoSidedF 2 1.0 7.4821e-02 36.2 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 14 49 3 0 0 14 49 4 0 MatMult 7 1.0 1.5549e-02 1.0 1.95e+06 1.0 5.4e+01 4.7e+03 1.0e+00 0 55 64 47 1 0 55 64 47 2 369 MatConvert 1 1.0 1.8753e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 MatAssemblyBegin 3 1.0 7.8189e-02 15.3 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 14 49 3 0 0 14 49 4 0 MatAssemblyEnd 3 1.0 1.8558e-02 1.0 3.69e+03 1.2 0.0e+00 0.0e+00 6.0e+00 0 0 0 0 9 0 0 0 0 12 1 MatGetRowIJ 2 1.0 2.8760e-06 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 1.0760e-02 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 VecTDot 14 1.0 5.6474e-04 1.1 2.82e+05 1.0 0.0e+00 0.0e+00 1.4e+01 0 8 0 0 21 0 8 0 0 29 1477 VecNorm 8 1.0 1.1628e-02 15.9 1.61e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 12 0 5 0 0 16 41 VecCopy 2 1.0 4.1623e-03 37.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 9 1.0 1.4422e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 14 1.0 6.1569e-04 1.5 2.82e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 1355 VecAYPX 6 1.0 3.2082e-04 1.7 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 1114 VecScatterBegin 8 1.0 3.2483e-02 2.6 0.00e+00 0.0 7.2e+01 3.8e+03 2.0e+00 0 0 86 51 3 0 0 86 51 4 0 VecScatterEnd 8 1.0 2.2854e-02 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 3 1.0 6.4665e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 2 1.0 3.2050e-02 2.6 0.00e+00 0.0 2.4e+01 9.6e+02 2.0e+00 0 0 29 4 3 0 0 29 4 4 0 SFPack 8 1.0 1.1338e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 8 1.0 3.4603e-05 2.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSetUp 1 1.0 5.7031e-04 3.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 5.0960e-01 1.0 2.79e+06 1.0 5.4e+01 4.7e+03 2.3e+01 2 80 64 47 34 2 80 64 47 47 16 PCSetUp 1 1.0 5.6003e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 2 0 0 0 3 2 0 0 0 4 0 PCApply 8 1.0 4.9086e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 2 0 0 0 0 2 0 0 0 0 0 --- Event Stage 1: Unknown ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Matrix 4 4 Index Set 6 6 IS L to G Mapping 3 3 Vector 12 12 Star Forest Graph 3 3 Krylov Solver 1 1 Preconditioner 1 1 Viewer 2 1 --- Event Stage 1: Unknown ======================================================================================================================== Average time to get PetscTime(): 7.58e-08 Average time for MPI_Barrier(): 3.669e-06 Average time for zero size MPI_Send(): 1.0145e-05 #PETSc Option Table entries: --ndofs 10000 --problem_type poisson --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2023-03-05 14:16:00 on reproducible Machine characteristics: Linux-5.10.0-21-amd64-x86_64-with-glibc2.36 Using PETSc directory: /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/trilinos -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/x86_64-linux-gnu/12 -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -ltrilinos_ml -lfftw3 -lfftw3_mpi -llapack -lblas -ltrilinos_zoltan -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lgfortran -lm -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 --problem_type poisson --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 10000 Option left: name:--problem_type value: poisson Option left: name:--scaling_type value: weak 2024-06-13 00:16:04.725 ( 24.140s) [RANK: 0 ] loguru.cpp:526 INFO| atexit ==== poisson strong scaling (3 processes with ndofs=30000) ==== 2024-06-13 00:16:06.170 ( 0.801s) [RANK: 0 ] utils.cpp:612 INFO| Compute partition of cells across ranks 2024-06-13 00:16:06.170 ( 0.801s) [RANK: 0 ] graphbuild.cpp:533 INFO| Building mesh dual graph 2024-06-13 00:16:06.170 ( 0.801s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2024-06-13 00:16:06.369 ( 1.001s) [RANK: 0 ] graphbuild.cpp:89 INFO| Build nonlocal part of mesh dual graph 2024-06-13 00:16:06.383 ( 1.015s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:16:06.399 ( 1.030s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:16:06.399 ( 1.030s) [RANK: 0 ] graphbuild.cpp:203 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 2024-06-13 00:16:06.457 ( 1.088s) [RANK: 0 ] graphbuild.cpp:545 INFO| Graph edges (local: 210000, non-local: 1800) 2024-06-13 00:16:06.457 ( 1.088s) [RANK: 0 ] partitioners.cpp:316 INFO| Compute graph partition using PT-SCOTCH 2024-06-13 00:16:24.681 ( 19.312s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2024-06-13 00:16:24.703 ( 19.334s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2024-06-13 00:16:24.766 ( 19.397s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2024-06-13 00:16:25.030 ( 19.661s) [RANK: 0 ] ordering.cpp:202 INFO| GPS pseudo-diameter:(162) 1473-51245 2024-06-13 00:16:25.076 ( 19.707s) [RANK: 0 ] Topology.cpp:923 INFO| Create topology 2024-06-13 00:16:25.147 ( 19.778s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2024-06-13 00:16:25.171 ( 19.802s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2024-06-13 00:16:25.495 ( 20.126s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:16:25.519 ( 20.150s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:16:25.559 ( 20.190s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:16:25.575 ( 20.206s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:16:25.625 ( 20.256s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:16:25.639 ( 20.270s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:16:25.703 ( 20.334s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2024-06-13 00:16:25.715 ( 20.346s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2024-06-13 00:16:25.811 ( 20.442s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:16:25.835 ( 20.466s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:16:25.911 ( 20.542s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2024-06-13 00:16:25.927 ( 20.558s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2024-06-13 00:16:25.927 ( 20.558s) [RANK: 0 ] MPI.h:368 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 2024-06-13 00:16:25.960 ( 20.591s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:16:25.983 ( 20.614s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:16:25.983 ( 20.614s) [RANK: 0 ] MPI.h:500 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 UnitCube (30x30x30) to be refined 0 times 2024-06-13 00:16:26.187 ( 20.819s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 2 2024-06-13 00:16:26.274 ( 20.905s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:16:26.303 ( 20.934s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:16:26.671 ( 21.302s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:16:26.695 ( 21.326s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:16:26.762 ( 21.393s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2024-06-13 00:16:26.762 ( 21.393s) [RANK: 0 ]topologycomputation.cpp:650 INFO| Computing mesh connectivity 2 - 3 from transpose. 2024-06-13 00:16:26.774 ( 21.405s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 0 2024-06-13 00:16:26.796 ( 21.428s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:16:26.819 ( 21.450s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:16:26.891 ( 21.522s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:16:26.899 ( 21.530s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:16:26.939 ( 21.570s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2024-06-13 00:16:26.947 ( 21.578s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2024-06-13 00:16:27.107 ( 21.738s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:16:27.135 ( 21.766s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:16:27.291 ( 21.922s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2024-06-13 00:16:27.292 ( 21.923s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2024-06-13 00:16:27.292 ( 21.923s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 0 2024-06-13 00:16:27.293 ( 21.924s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2024-06-13 00:16:27.703 ( 22.334s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2024-06-13 00:16:27.703 ( 22.334s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 2 2024-06-13 00:16:27.703 ( 22.334s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2024-06-13 00:16:27.735 ( 22.366s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2024-06-13 00:16:28.000 ( 22.631s) [RANK: 0 ] SparsityPattern.cpp:389 INFO| Column ghost size increased from 454 to 1246 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.5.2 dolfinx hash: debian_1:0.5.2-2+b1 ufl hash: da4f06cb7b24fd71359bedaeafbca801c698ea33 petsc version: Petsc Release Version 3.18.5, Feb 27, 2023 Problem type: poisson Scaling type: strong Num processes: 3 Num cells: 162000 (162 thousand) Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- 2024-06-13 00:16:28.291 ( 22.922s) [RANK: 0 ] petsc.cpp:677 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical SpGEMM type cusparse linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=29791, cols=29791 total: nonzeros=424171, allocated nonzeros=424171 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh | 1 20.046547 20.046547 Build dofmap data | 2 0.343146 0.686291 Build sparsity | 1 0.065763 0.065763 Compute connectivity 2-3 | 1 0.011446 0.011446 Compute dof reordering map | 2 0.000682 0.001363 Compute entities of dim = 2 | 1 0.585484 0.585484 Compute graph partition (SCOTCH) | 1 18.190277 18.190277 Compute local part of mesh dual graph | 2 0.241615 0.483230 Compute local-to-local map | 1 0.001619 0.001619 Compute non-local part of mesh dual graph | 1 0.087303 0.087303 Compute-local-to-global links for global/local adjacency list | 1 0.001467 0.001467 Distribute AdjacencyList nodes to destination ranks | 1 0.130459 0.130459 Distribute row-wise data (scalable) | 1 0.204592 0.204592 Extract partition boundaries from SCOTCH graph | 1 0.002115 0.002115 GPS: create_level_structure | 2 0.007783 0.023348 Get SCOTCH graph data | 1 0.000014 0.000014 Gibbs-Poole-Stockmeyer ordering | 1 0.057372 0.057372 Init MPI | 1 0.701279 0.701279 Init PETSc | 1 0.077617 0.077617 Init dofmap from element dofmap | 2 0.015978 0.031957 Init logging | 1 0.000084 0.000084 PETSc Krylov solver | 1 0.434506 0.434506 SCOTCH: call SCOTCH_dgraphBuild | 1 0.012699 0.012699 SCOTCH: call SCOTCH_dgraphHalo | 1 0.035824 0.035824 SCOTCH: call SCOTCH_dgraphPart | 1 18.138059 18.138059 SparsityPattern::assemble | 1 0.159669 0.159669 Topology: create | 1 0.539118 0.539118 Topology: determine shared index ownership | 1 0.188563 0.188563 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.023470 0.023470 ZZZ Assemble | 1 1.099110 1.099110 ZZZ Assemble matrix | 1 0.198252 0.198252 ZZZ Assemble vector | 1 0.032628 0.032628 ZZZ Create Mesh | 1 20.046698 20.046698 ZZZ Create RHS function | 1 0.355811 0.355811 ZZZ Create boundary conditions | 1 0.159153 0.159153 ZZZ Create facets and facet->cell connectivity | 1 0.596693 0.596693 ZZZ FunctionSpace | 1 0.414411 0.414411 ZZZ Solve | 1 0.437865 0.437865 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named i-capture-the-hostname with 3 processors, by pbuilder2 Thu Jun 13 00:16:28 2024 Using Petsc Release Version 3.18.5, Feb 27, 2023 Max Max/Min Avg Total Time (sec): 2.258e+01 1.000 2.258e+01 Objects: 3.200e+01 1.000 3.200e+01 Flops: 3.510e+06 1.029 3.449e+06 1.035e+07 Flops/sec: 1.554e+05 1.029 1.527e+05 4.582e+05 MPI Msg Count: 2.800e+01 1.000 2.800e+01 8.400e+01 MPI Msg Len (bytes): 1.990e+05 1.261 6.459e+03 5.426e+05 MPI Reductions: 6.700e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 2.2582e+01 100.0% 1.0347e+07 100.0% 8.400e+01 100.0% 6.459e+03 100.0% 4.900e+01 73.1% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 4 1.0 8.4618e-02 618.3 0.00e+00 0.0 1.8e+01 4.0e+00 4.0e+00 0 0 21 0 6 0 0 21 0 8 0 BuildTwoSidedF 2 1.0 8.4590e-02 621.1 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 14 49 3 0 0 14 49 4 0 MatMult 7 1.0 5.4844e-03 1.0 1.94e+06 1.0 5.4e+01 4.8e+03 1.0e+00 0 55 64 48 1 0 55 64 48 2 1045 MatConvert 1 1.0 1.3072e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 MatAssemblyBegin 3 1.0 8.7604e-02 34.3 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 14 49 3 0 0 14 49 4 0 MatAssemblyEnd 3 1.0 1.7878e-02 1.4 3.91e+03 1.3 0.0e+00 0.0e+00 6.0e+00 0 0 0 0 9 0 0 0 0 12 1 MatGetRowIJ 2 1.0 1.7010e-06 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 4.2284e-04 4.3 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 VecTDot 14 1.0 4.2692e-04 1.2 2.82e+05 1.0 0.0e+00 0.0e+00 1.4e+01 0 8 0 0 21 0 8 0 0 29 1954 VecNorm 8 1.0 7.8851e-04 3.0 1.61e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 12 0 5 0 0 16 605 VecCopy 2 1.0 1.0328e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 9 1.0 1.2596e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 14 1.0 5.0295e-04 1.2 2.82e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 1659 VecAYPX 6 1.0 2.4484e-04 1.8 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 1460 VecScatterBegin 8 1.0 4.2506e-04 1.1 0.00e+00 0.0 7.2e+01 3.8e+03 2.0e+00 0 0 86 51 3 0 0 86 51 4 0 VecScatterEnd 8 1.0 1.9878e-03 7.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 3 1.0 7.0369e-05 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 2 1.0 2.0562e-04 1.2 0.00e+00 0.0 2.4e+01 9.8e+02 2.0e+00 0 0 29 4 3 0 0 29 4 4 0 SFPack 8 1.0 8.9606e-05 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 8 1.0 9.8660e-06 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSetUp 1 1.0 3.2280e-04 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 1.7056e-01 1.0 2.79e+06 1.0 5.4e+01 4.8e+03 2.3e+01 1 80 64 48 34 1 80 64 48 47 48 PCSetUp 1 1.0 2.6310e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 1 0 0 0 3 1 0 0 0 4 0 PCApply 8 1.0 1.6346e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 --- Event Stage 1: Unknown ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Matrix 4 4 Index Set 6 6 IS L to G Mapping 3 3 Vector 12 12 Star Forest Graph 3 3 Krylov Solver 1 1 Preconditioner 1 1 Viewer 2 1 --- Event Stage 1: Unknown ======================================================================================================================== Average time to get PetscTime(): 6.55e-08 Average time for MPI_Barrier(): 2.839e-06 Average time for zero size MPI_Send(): 3.90233e-06 #PETSc Option Table entries: --ndofs 30000 --problem_type poisson --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lhdf5 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-ml=1 --with-ml-include=/usr/include/trilinos --with-ml-lib=-ltrilinos_ml --with-zoltan=1 --with-zoltan-include=/usr/include/trilinos --with-zoltan-lib=-ltrilinos_zoltan --prefix=/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2023-03-05 14:16:00 on reproducible Machine characteristics: Linux-5.10.0-21-amd64-x86_64-with-glibc2.36 Using PETSc directory: /usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-zFyZSX/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/trilinos -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.18/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/x86_64-linux-gnu/12 -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -ltrilinos_ml -lfftw3 -lfftw3_mpi -llapack -lblas -ltrilinos_zoltan -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lgfortran -lm -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 30000 --problem_type poisson --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 30000 Option left: name:--problem_type value: poisson Option left: name:--scaling_type value: strong 2024-06-13 00:16:28.820 ( 23.452s) [RANK: 0 ] loguru.cpp:526 INFO| atexit make[1]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake -O--sourcedirectory=src dh_prep -O--buildsystem=cmake -O--sourcedirectory=src dh_auto_install -O--buildsystem=cmake -O--sourcedirectory=src cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/fenicsx-performance-tests-0.5.0\~git20220731.821823b/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu' /usr/bin/cmake -S"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -B"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/debian/tmp/usr/bin/dolfinx-scaling-test make[1]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-x86_64-linux-gnu' dh_install -O--buildsystem=cmake -O--sourcedirectory=src dh_installdocs -O--buildsystem=cmake -O--sourcedirectory=src dh_installchangelogs -O--buildsystem=cmake -O--sourcedirectory=src dh_installman -O--buildsystem=cmake -O--sourcedirectory=src dh_installsystemduser -O--buildsystem=cmake -O--sourcedirectory=src dh_perl -O--buildsystem=cmake -O--sourcedirectory=src dh_link -O--buildsystem=cmake -O--sourcedirectory=src dh_strip_nondeterminism -O--buildsystem=cmake -O--sourcedirectory=src dh_compress -O--buildsystem=cmake -O--sourcedirectory=src dh_fixperms -O--buildsystem=cmake -O--sourcedirectory=src dh_missing -O--buildsystem=cmake -O--sourcedirectory=src dh_dwz -a -O--buildsystem=cmake -O--sourcedirectory=src dh_strip -a -O--buildsystem=cmake -O--sourcedirectory=src dh_makeshlibs -a -O--buildsystem=cmake -O--sourcedirectory=src dh_shlibdeps -a -O--buildsystem=cmake -O--sourcedirectory=src dh_installdeb -O--buildsystem=cmake -O--sourcedirectory=src dh_gencontrol -O--buildsystem=cmake -O--sourcedirectory=src dh_md5sums -O--buildsystem=cmake -O--sourcedirectory=src dh_builddeb -O--buildsystem=cmake -O--sourcedirectory=src dpkg-deb: building package 'fenicsx-performance-tests' in '../fenicsx-performance-tests_0.5.0~git20220731.821823b-1_amd64.deb'. dpkg-deb: building package 'fenicsx-performance-tests-dbgsym' in '../fenicsx-performance-tests-dbgsym_0.5.0~git20220731.821823b-1_amd64.deb'. dpkg-deb: building package 'fenicsx-performance-tests-source' in '../fenicsx-performance-tests-source_0.5.0~git20220731.821823b-1_all.deb'. dpkg-genbuildinfo --build=binary -O../fenicsx-performance-tests_0.5.0~git20220731.821823b-1_amd64.buildinfo dpkg-genchanges --build=binary -O../fenicsx-performance-tests_0.5.0~git20220731.821823b-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/4142753/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/4142753/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4142753 and its subdirectories I: Current time: Thu Jun 13 00:17:12 +14 2024 I: pbuilder-time-stamp: 1718187432