I: pbuilder: network access will be disabled during build
I: Current time: Mon May 15 20:29:13 -12 2023
I: pbuilder-time-stamp: 1684225753
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [hts-nim-tools_0.2.1-1.dsc]
I: copying [./hts-nim-tools_0.2.1.orig.tar.gz]
I: copying [./hts-nim-tools_0.2.1-1.debian.tar.xz]
I: Extracting source
gpgv: Signature made Fri Nov 13 06:33:15 2020 -12
gpgv:                using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv:                issuer "npatra974@gmail.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./hts-nim-tools_0.2.1-1.dsc: no acceptable signature found
dpkg-source: info: extracting hts-nim-tools in hts-nim-tools-0.2.1
dpkg-source: info: unpacking hts-nim-tools_0.2.1.orig.tar.gz
dpkg-source: info: unpacking hts-nim-tools_0.2.1-1.debian.tar.xz
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/991956/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='amd64'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15 '
  DISTRIBUTION='bookworm'
  HOME='/root'
  HOST_ARCH='amd64'
  IFS=' 	
  '
  INVOCATION_ID='18b5dd0c71c142199283781a80fde091'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='991956'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rrtURkTd/pbuilderrc_IohZ --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rrtURkTd/b1 --logfile b1/build.log hts-nim-tools_0.2.1-1.dsc'
  SUDO_GID='110'
  SUDO_UID='105'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
  http_proxy='http://78.137.99.97:3128'
I: uname -a
  Linux ionos1-amd64 5.10.0-23-amd64 #1 SMP Debian 5.10.179-1 (2023-05-12) x86_64 GNU/Linux
I: ls -l /bin
  total 5632
  -rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash
  -rwxr-xr-x 3 root root   39224 Sep 18  2022 bunzip2
  -rwxr-xr-x 3 root root   39224 Sep 18  2022 bzcat
  lrwxrwxrwx 1 root root       6 Sep 18  2022 bzcmp -> bzdiff
  -rwxr-xr-x 1 root root    2225 Sep 18  2022 bzdiff
  lrwxrwxrwx 1 root root       6 Sep 18  2022 bzegrep -> bzgrep
  -rwxr-xr-x 1 root root    4893 Nov 27  2021 bzexe
  lrwxrwxrwx 1 root root       6 Sep 18  2022 bzfgrep -> bzgrep
  -rwxr-xr-x 1 root root    3775 Sep 18  2022 bzgrep
  -rwxr-xr-x 3 root root   39224 Sep 18  2022 bzip2
  -rwxr-xr-x 1 root root   14568 Sep 18  2022 bzip2recover
  lrwxrwxrwx 1 root root       6 Sep 18  2022 bzless -> bzmore
  -rwxr-xr-x 1 root root    1297 Sep 18  2022 bzmore
  -rwxr-xr-x 1 root root   44016 Sep 20  2022 cat
  -rwxr-xr-x 1 root root   68656 Sep 20  2022 chgrp
  -rwxr-xr-x 1 root root   64496 Sep 20  2022 chmod
  -rwxr-xr-x 1 root root   72752 Sep 20  2022 chown
  -rwxr-xr-x 1 root root  151152 Sep 20  2022 cp
  -rwxr-xr-x 1 root root  125640 Jan  5 01:20 dash
  -rwxr-xr-x 1 root root  121904 Sep 20  2022 date
  -rwxr-xr-x 1 root root   89240 Sep 20  2022 dd
  -rwxr-xr-x 1 root root  102200 Sep 20  2022 df
  -rwxr-xr-x 1 root root  151344 Sep 20  2022 dir
  -rwxr-xr-x 1 root root   88656 Mar 22 22:02 dmesg
  lrwxrwxrwx 1 root root       8 Dec 19 01:33 dnsdomainname -> hostname
  lrwxrwxrwx 1 root root       8 Dec 19 01:33 domainname -> hostname
  -rwxr-xr-x 1 root root   43856 Sep 20  2022 echo
  -rwxr-xr-x 1 root root      41 Jan 24 02:43 egrep
  -rwxr-xr-x 1 root root   35664 Sep 20  2022 false
  -rwxr-xr-x 1 root root      41 Jan 24 02:43 fgrep
  -rwxr-xr-x 1 root root   85600 Mar 22 22:02 findmnt
  -rwsr-xr-x 1 root root   35128 Mar 22 20:35 fusermount
  -rwxr-xr-x 1 root root  203152 Jan 24 02:43 grep
  -rwxr-xr-x 2 root root    2346 Apr  9  2022 gunzip
  -rwxr-xr-x 1 root root    6447 Apr  9  2022 gzexe
  -rwxr-xr-x 1 root root   98136 Apr  9  2022 gzip
  -rwxr-xr-x 1 root root   22680 Dec 19 01:33 hostname
  -rwxr-xr-x 1 root root   72824 Sep 20  2022 ln
  -rwxr-xr-x 1 root root   53024 Mar 23 00:40 login
  -rwxr-xr-x 1 root root  151344 Sep 20  2022 ls
  -rwxr-xr-x 1 root root  207168 Mar 22 22:02 lsblk
  -rwxr-xr-x 1 root root   97552 Sep 20  2022 mkdir
  -rwxr-xr-x 1 root root   72912 Sep 20  2022 mknod
  -rwxr-xr-x 1 root root   43952 Sep 20  2022 mktemp
  -rwxr-xr-x 1 root root   59712 Mar 22 22:02 more
  -rwsr-xr-x 1 root root   59704 Mar 22 22:02 mount
  -rwxr-xr-x 1 root root   18744 Mar 22 22:02 mountpoint
  -rwxr-xr-x 1 root root  142968 Sep 20  2022 mv
  lrwxrwxrwx 1 root root       8 Dec 19 01:33 nisdomainname -> hostname
  lrwxrwxrwx 1 root root      14 Apr  2 18:25 pidof -> /sbin/killall5
  -rwxr-xr-x 1 root root   43952 Sep 20  2022 pwd
  lrwxrwxrwx 1 root root       4 Apr 23 09:23 rbash -> bash
  -rwxr-xr-x 1 root root   52112 Sep 20  2022 readlink
  -rwxr-xr-x 1 root root   72752 Sep 20  2022 rm
  -rwxr-xr-x 1 root root   56240 Sep 20  2022 rmdir
  -rwxr-xr-x 1 root root   27560 Nov  2  2022 run-parts
  -rwxr-xr-x 1 root root  126424 Jan  5 07:55 sed
  lrwxrwxrwx 1 root root       4 Jan  5 01:20 sh -> dash
  -rwxr-xr-x 1 root root   43888 Sep 20  2022 sleep
  -rwxr-xr-x 1 root root   85008 Sep 20  2022 stty
  -rwsr-xr-x 1 root root   72000 Mar 22 22:02 su
  -rwxr-xr-x 1 root root   39824 Sep 20  2022 sync
  -rwxr-xr-x 1 root root  531984 Apr  6 02:25 tar
  -rwxr-xr-x 1 root root   14520 Nov  2  2022 tempfile
  -rwxr-xr-x 1 root root  109616 Sep 20  2022 touch
  -rwxr-xr-x 1 root root   35664 Sep 20  2022 true
  -rwxr-xr-x 1 root root   14568 Mar 22 20:35 ulockmgr_server
  -rwsr-xr-x 1 root root   35128 Mar 22 22:02 umount
  -rwxr-xr-x 1 root root   43888 Sep 20  2022 uname
  -rwxr-xr-x 2 root root    2346 Apr  9  2022 uncompress
  -rwxr-xr-x 1 root root  151344 Sep 20  2022 vdir
  -rwxr-xr-x 1 root root   72024 Mar 22 22:02 wdctl
  lrwxrwxrwx 1 root root       8 Dec 19 01:33 ypdomainname -> hostname
  -rwxr-xr-x 1 root root    1984 Apr  9  2022 zcat
  -rwxr-xr-x 1 root root    1678 Apr  9  2022 zcmp
  -rwxr-xr-x 1 root root    6460 Apr  9  2022 zdiff
  -rwxr-xr-x 1 root root      29 Apr  9  2022 zegrep
  -rwxr-xr-x 1 root root      29 Apr  9  2022 zfgrep
  -rwxr-xr-x 1 root root    2081 Apr  9  2022 zforce
  -rwxr-xr-x 1 root root    8103 Apr  9  2022 zgrep
  -rwxr-xr-x 1 root root    2206 Apr  9  2022 zless
  -rwxr-xr-x 1 root root    1842 Apr  9  2022 zmore
  -rwxr-xr-x 1 root root    4577 Apr  9  2022 znew
I: user script /srv/workspace/pbuilder/991956/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), nim, nim-hts-dev, nim-docopt-dev, nim-unicodedb-dev, nim-unicodeplus-dev, nim-regex-dev, nim-kexpr-dev, nim-lapper-dev, help2man, libhts-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19596 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on nim; however:
  Package nim is not installed.
 pbuilder-satisfydepends-dummy depends on nim-hts-dev; however:
  Package nim-hts-dev is not installed.
 pbuilder-satisfydepends-dummy depends on nim-docopt-dev; however:
  Package nim-docopt-dev is not installed.
 pbuilder-satisfydepends-dummy depends on nim-unicodedb-dev; however:
  Package nim-unicodedb-dev is not installed.
 pbuilder-satisfydepends-dummy depends on nim-unicodeplus-dev; however:
  Package nim-unicodeplus-dev is not installed.
 pbuilder-satisfydepends-dummy depends on nim-regex-dev; however:
  Package nim-regex-dev is not installed.
 pbuilder-satisfydepends-dummy depends on nim-kexpr-dev; however:
  Package nim-kexpr-dev is not installed.
 pbuilder-satisfydepends-dummy depends on nim-lapper-dev; however:
  Package nim-lapper-dev is not installed.
 pbuilder-satisfydepends-dummy depends on help2man; however:
  Package help2man is not installed.
 pbuilder-satisfydepends-dummy depends on libhts-dev; however:
  Package libhts-dev is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcurl3-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1{a} libfile-stripnondeterminism-perl{a} libhts-dev{a} libhts3{a} libhtscodecs2{a} libicu72{a} libldap-2.5-0{a} liblocale-gettext-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpcre3{a} libpipeline1{a} libpsl5{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} nim{a} nim-docopt-dev{a} nim-hts-dev{a} nim-kexpr-dev{a} nim-lapper-dev{a} nim-regex-dev{a} nim-unicodedb-dev{a} nim-unicodeplus-dev{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  ca-certificates curl git libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 
0 packages upgraded, 58 newly installed, 0 to remove and 0 not upgraded.
Need to get 29.1 MB of archives. After unpacking 109 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main amd64 liblocale-gettext-perl amd64 1.07-5 [15.4 kB]
Get: 2 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 3 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB]
Get: 4 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB]
Get: 5 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB]
Get: 6 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB]
Get: 7 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB]
Get: 8 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB]
Get: 9 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB]
Get: 10 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB]
Get: 11 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB]
Get: 12 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB]
Get: 13 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB]
Get: 14 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 15 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get: 16 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB]
Get: 17 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 18 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB]
Get: 19 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 20 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 21 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B]
Get: 22 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 23 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 24 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB]
Get: 25 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB]
Get: 26 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB]
Get: 27 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB]
Get: 28 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB]
Get: 29 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 30 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 31 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB]
Get: 32 http://deb.debian.org/debian bookworm/main amd64 help2man amd64 1.49.3 [198 kB]
Get: 33 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB]
Get: 34 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB]
Get: 35 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB]
Get: 36 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB]
Get: 37 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB]
Get: 38 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB]
Get: 39 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB]
Get: 40 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB]
Get: 41 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.88.1-9 [381 kB]
Get: 42 http://deb.debian.org/debian bookworm/main amd64 libcurl4-gnutls-dev amd64 7.88.1-9 [481 kB]
Get: 43 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB]
Get: 44 http://deb.debian.org/debian bookworm/main amd64 libdeflate-dev amd64 1.14-1 [53.3 kB]
Get: 45 http://deb.debian.org/debian bookworm/main amd64 libhtscodecs2 amd64 1.3.0-4 [87.5 kB]
Get: 46 http://deb.debian.org/debian bookworm/main amd64 libhts3 amd64 1.16+ds-3 [430 kB]
Get: 47 http://deb.debian.org/debian bookworm/main amd64 liblzma-dev amd64 5.4.1-0.2 [260 kB]
Get: 48 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB]
Get: 49 http://deb.debian.org/debian bookworm/main amd64 libhts-dev amd64 1.16+ds-3 [1601 kB]
Get: 50 http://deb.debian.org/debian bookworm/main amd64 libpcre3 amd64 2:8.39-15 [341 kB]
Get: 51 http://deb.debian.org/debian bookworm/main amd64 nim amd64 1.6.10-2 [4077 kB]
Get: 52 http://deb.debian.org/debian bookworm/main amd64 nim-unicodedb-dev all 0.9.0-2 [423 kB]
Get: 53 http://deb.debian.org/debian bookworm/main amd64 nim-unicodeplus-dev all 0.5.1-2 [5340 B]
Get: 54 http://deb.debian.org/debian bookworm/main amd64 nim-regex-dev all 0.17.0+ds-2 [41.2 kB]
Get: 55 http://deb.debian.org/debian bookworm/main amd64 nim-docopt-dev all 0.6.8-3 [10.6 kB]
Get: 56 http://deb.debian.org/debian bookworm/main amd64 nim-hts-dev all 0.3.19+ds-1 [35.7 kB]
Get: 57 http://deb.debian.org/debian bookworm/main amd64 nim-kexpr-dev all 0.0.2-3 [7976 B]
Get: 58 http://deb.debian.org/debian bookworm/main amd64 nim-lapper-dev all 0.1.7-5 [7356 B]
Fetched 29.1 MB in 6s (4485 kB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package liblocale-gettext-perl.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19596 files and directories currently installed.)
Preparing to unpack .../00-liblocale-gettext-perl_1.07-5_amd64.deb ...
Unpacking liblocale-gettext-perl (1.07-5) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ...
Unpacking sensible-utils (0.0.17+nmu1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../02-libmagic-mgc_1%3a5.44-3_amd64.deb ...
Unpacking libmagic-mgc (1:5.44-3) ...
Selecting previously unselected package libmagic1:amd64.
Preparing to unpack .../03-libmagic1_1%3a5.44-3_amd64.deb ...
Unpacking libmagic1:amd64 (1:5.44-3) ...
Selecting previously unselected package file.
Preparing to unpack .../04-file_1%3a5.44-3_amd64.deb ...
Unpacking file (1:5.44-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../05-gettext-base_0.21-12_amd64.deb ...
Unpacking gettext-base (0.21-12) ...
Selecting previously unselected package libuchardet0:amd64.
Preparing to unpack .../06-libuchardet0_0.0.7-1_amd64.deb ...
Unpacking libuchardet0:amd64 (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../07-groff-base_1.22.4-10_amd64.deb ...
Unpacking groff-base (1.22.4-10) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../08-bsdextrautils_2.38.1-5+b1_amd64.deb ...
Unpacking bsdextrautils (2.38.1-5+b1) ...
Selecting previously unselected package libpipeline1:amd64.
Preparing to unpack .../09-libpipeline1_1.5.7-1_amd64.deb ...
Unpacking libpipeline1:amd64 (1.5.7-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../10-man-db_2.11.2-2_amd64.deb ...
Unpacking man-db (2.11.2-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../11-m4_1.4.19-3_amd64.deb ...
Unpacking m4 (1.4.19-3) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../12-autoconf_2.71-3_all.deb ...
Unpacking autoconf (2.71-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../15-autopoint_0.21-12_all.deb ...
Unpacking autopoint (0.21-12) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../16-libdebhelper-perl_13.11.4_all.deb ...
Unpacking libdebhelper-perl (13.11.4) ...
Selecting previously unselected package libtool.
Preparing to unpack .../17-libtool_2.4.7-5_all.deb ...
Unpacking libtool (2.4.7-5) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../18-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../20-libsub-override-perl_0.09-4_all.deb ...
Unpacking libsub-override-perl (0.09-4) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../22-dh-strip-nondeterminism_1.13.1-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.13.1-1) ...
Selecting previously unselected package libelf1:amd64.
Preparing to unpack .../23-libelf1_0.188-2.1_amd64.deb ...
Unpacking libelf1:amd64 (0.188-2.1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../24-dwz_0.15-1_amd64.deb ...
Unpacking dwz (0.15-1) ...
Selecting previously unselected package libicu72:amd64.
Preparing to unpack .../25-libicu72_72.1-3_amd64.deb ...
Unpacking libicu72:amd64 (72.1-3) ...
Selecting previously unselected package libxml2:amd64.
Preparing to unpack .../26-libxml2_2.9.14+dfsg-1.2_amd64.deb ...
Unpacking libxml2:amd64 (2.9.14+dfsg-1.2) ...
Selecting previously unselected package gettext.
Preparing to unpack .../27-gettext_0.21-12_amd64.deb ...
Unpacking gettext (0.21-12) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../30-debhelper_13.11.4_all.deb ...
Unpacking debhelper (13.11.4) ...
Selecting previously unselected package help2man.
Preparing to unpack .../31-help2man_1.49.3_amd64.deb ...
Unpacking help2man (1.49.3) ...
Selecting previously unselected package libbrotli1:amd64.
Preparing to unpack .../32-libbrotli1_1.0.9-2+b6_amd64.deb ...
Unpacking libbrotli1:amd64 (1.0.9-2+b6) ...
Selecting previously unselected package libsasl2-modules-db:amd64.
Preparing to unpack .../33-libsasl2-modules-db_2.1.28+dfsg-10_amd64.deb ...
Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ...
Selecting previously unselected package libsasl2-2:amd64.
Preparing to unpack .../34-libsasl2-2_2.1.28+dfsg-10_amd64.deb ...
Unpacking libsasl2-2:amd64 (2.1.28+dfsg-10) ...
Selecting previously unselected package libldap-2.5-0:amd64.
Preparing to unpack .../35-libldap-2.5-0_2.5.13+dfsg-5_amd64.deb ...
Unpacking libldap-2.5-0:amd64 (2.5.13+dfsg-5) ...
Selecting previously unselected package libnghttp2-14:amd64.
Preparing to unpack .../36-libnghttp2-14_1.52.0-1_amd64.deb ...
Unpacking libnghttp2-14:amd64 (1.52.0-1) ...
Selecting previously unselected package libpsl5:amd64.
Preparing to unpack .../37-libpsl5_0.21.2-1_amd64.deb ...
Unpacking libpsl5:amd64 (0.21.2-1) ...
Selecting previously unselected package librtmp1:amd64.
Preparing to unpack .../38-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ...
Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ...
Selecting previously unselected package libssh2-1:amd64.
Preparing to unpack .../39-libssh2-1_1.10.0-3+b1_amd64.deb ...
Unpacking libssh2-1:amd64 (1.10.0-3+b1) ...
Selecting previously unselected package libcurl3-gnutls:amd64.
Preparing to unpack .../40-libcurl3-gnutls_7.88.1-9_amd64.deb ...
Unpacking libcurl3-gnutls:amd64 (7.88.1-9) ...
Selecting previously unselected package libcurl4-gnutls-dev:amd64.
Preparing to unpack .../41-libcurl4-gnutls-dev_7.88.1-9_amd64.deb ...
Unpacking libcurl4-gnutls-dev:amd64 (7.88.1-9) ...
Selecting previously unselected package libdeflate0:amd64.
Preparing to unpack .../42-libdeflate0_1.14-1_amd64.deb ...
Unpacking libdeflate0:amd64 (1.14-1) ...
Selecting previously unselected package libdeflate-dev:amd64.
Preparing to unpack .../43-libdeflate-dev_1.14-1_amd64.deb ...
Unpacking libdeflate-dev:amd64 (1.14-1) ...
Selecting previously unselected package libhtscodecs2:amd64.
Preparing to unpack .../44-libhtscodecs2_1.3.0-4_amd64.deb ...
Unpacking libhtscodecs2:amd64 (1.3.0-4) ...
Selecting previously unselected package libhts3:amd64.
Preparing to unpack .../45-libhts3_1.16+ds-3_amd64.deb ...
Unpacking libhts3:amd64 (1.16+ds-3) ...
Selecting previously unselected package liblzma-dev:amd64.
Preparing to unpack .../46-liblzma-dev_5.4.1-0.2_amd64.deb ...
Unpacking liblzma-dev:amd64 (5.4.1-0.2) ...
Selecting previously unselected package zlib1g-dev:amd64.
Preparing to unpack .../47-zlib1g-dev_1%3a1.2.13.dfsg-1_amd64.deb ...
Unpacking zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ...
Selecting previously unselected package libhts-dev:amd64.
Preparing to unpack .../48-libhts-dev_1.16+ds-3_amd64.deb ...
Unpacking libhts-dev:amd64 (1.16+ds-3) ...
Selecting previously unselected package libpcre3:amd64.
Preparing to unpack .../49-libpcre3_2%3a8.39-15_amd64.deb ...
Unpacking libpcre3:amd64 (2:8.39-15) ...
Selecting previously unselected package nim.
Preparing to unpack .../50-nim_1.6.10-2_amd64.deb ...
Unpacking nim (1.6.10-2) ...
Selecting previously unselected package nim-unicodedb-dev.
Preparing to unpack .../51-nim-unicodedb-dev_0.9.0-2_all.deb ...
Unpacking nim-unicodedb-dev (0.9.0-2) ...
Selecting previously unselected package nim-unicodeplus-dev.
Preparing to unpack .../52-nim-unicodeplus-dev_0.5.1-2_all.deb ...
Unpacking nim-unicodeplus-dev (0.5.1-2) ...
Selecting previously unselected package nim-regex-dev.
Preparing to unpack .../53-nim-regex-dev_0.17.0+ds-2_all.deb ...
Unpacking nim-regex-dev (0.17.0+ds-2) ...
Selecting previously unselected package nim-docopt-dev.
Preparing to unpack .../54-nim-docopt-dev_0.6.8-3_all.deb ...
Unpacking nim-docopt-dev (0.6.8-3) ...
Selecting previously unselected package nim-hts-dev.
Preparing to unpack .../55-nim-hts-dev_0.3.19+ds-1_all.deb ...
Unpacking nim-hts-dev (0.3.19+ds-1) ...
Selecting previously unselected package nim-kexpr-dev.
Preparing to unpack .../56-nim-kexpr-dev_0.0.2-3_all.deb ...
Unpacking nim-kexpr-dev (0.0.2-3) ...
Selecting previously unselected package nim-lapper-dev.
Preparing to unpack .../57-nim-lapper-dev_0.1.7-5_all.deb ...
Unpacking nim-lapper-dev (0.1.7-5) ...
Setting up libhtscodecs2:amd64 (1.3.0-4) ...
Setting up libpipeline1:amd64 (1.5.7-1) ...
Setting up libpsl5:amd64 (0.21.2-1) ...
Setting up libicu72:amd64 (72.1-3) ...
Setting up bsdextrautils (2.38.1-5+b1) ...
Setting up nim-lapper-dev (0.1.7-5) ...
Setting up libmagic-mgc (1:5.44-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.11.4) ...
Setting up libbrotli1:amd64 (1.0.9-2+b6) ...
Setting up libnghttp2-14:amd64 (1.52.0-1) ...
Setting up libmagic1:amd64 (1:5.44-3) ...
Setting up nim-unicodedb-dev (0.9.0-2) ...
Setting up libdeflate0:amd64 (1.14-1) ...
Setting up gettext-base (0.21-12) ...
Setting up m4 (1.4.19-3) ...
Setting up file (1:5.44-3) ...
Setting up nim-kexpr-dev (0.0.2-3) ...
Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ...
Setting up libpcre3:amd64 (2:8.39-15) ...
Setting up autotools-dev (20220109.1) ...
Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up autopoint (0.21-12) ...
Setting up libsasl2-2:amd64 (2.1.28+dfsg-10) ...
Setting up autoconf (2.71-3) ...
Setting up liblzma-dev:amd64 (5.4.1-0.2) ...
Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ...
Setting up sensible-utils (0.0.17+nmu1) ...
Setting up libuchardet0:amd64 (0.0.7-1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libssh2-1:amd64 (1.10.0-3+b1) ...
Setting up nim (1.6.10-2) ...
Setting up libdeflate-dev:amd64 (1.14-1) ...
Setting up libelf1:amd64 (0.188-2.1) ...
Setting up libxml2:amd64 (2.9.14+dfsg-1.2) ...
Setting up liblocale-gettext-perl (1.07-5) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up nim-unicodeplus-dev (0.5.1-2) ...
Setting up gettext (0.21-12) ...
Setting up libtool (2.4.7-5) ...
Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up help2man (1.49.3) ...
Setting up dh-autoreconf (20) ...
Setting up nim-hts-dev (0.3.19+ds-1) ...
Setting up nim-regex-dev (0.17.0+ds-2) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.22.4-10) ...
Setting up nim-docopt-dev (0.6.8-3) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libcurl3-gnutls:amd64 (7.88.1-9) ...
Setting up libcurl4-gnutls-dev:amd64 (7.88.1-9) ...
Setting up man-db (2.11.2-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libhts3:amd64 (1.16+ds-3) ...
Setting up libhts-dev:amd64 (1.16+ds-3) ...
Setting up debhelper (13.11.4) ...
Processing triggers for libc-bin (2.36-9) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
I: Building the package
I: Running cd /build/hts-nim-tools-0.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../hts-nim-tools_0.2.1-1_source.changes
dpkg-buildpackage: info: source package hts-nim-tools
dpkg-buildpackage: info: source version 0.2.1-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Nilesh Patra <npatra974@gmail.com>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
 debian/rules clean
dh clean
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/hts-nim-tools-0.2.1'
rm -f src/version src/vcf_check src/bam_filter src/hts_nim_tools src/count_reads src/copy_number_sampler
rm -rf /build/hts-nim-tools-0.2.1/nimcache
rm -rf bin
make[1]: Leaving directory '/build/hts-nim-tools-0.2.1'
   dh_clean
	rm -f debian/debhelper-build-stamp
	rm -rf debian/.debhelper/
	rm -f -- debian/hts-nim-tools.substvars debian/files
	rm -fr -- debian/hts-nim-tools/ debian/tmp/
	find .  \( \( \
		\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
	        \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
		\) -exec rm -f {} + \) -o \
		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
 debian/rules binary
dh binary
   dh_update_autotools_config
   dh_autoreconf
   debian/rules override_dh_auto_build
make[1]: Entering directory '/build/hts-nim-tools-0.2.1'
#nim c --nimcache:/build/hts-nim-tools-0.2.1/nimcache -p:/usr/share/nimble/unicodeplus -p:/usr/share/nimble/unicodedb -p:/usr/share/nimble/regex -p:/usr/share/nimble/docopt -p:/usr/share/nimble/hts src/vcf_check.nim
#nim c --nimcache:/build/hts-nim-tools-0.2.1/nimcache -p:/usr/share/nimble/unicodeplus -p:/usr/share/nimble/unicodedb -p:/usr/share/nimble/regex -p:/usr/share/nimble/docopt -p:/usr/share/nimble/kexpr  -p:/usr/share/nimble/hts src/bam_filter.nim
#nim c --nimcache:/build/hts-nim-tools-0.2.1/nimcache -p:/usr/share/nimble/unicodeplus -p:/usr/share/nimble/unicodedb -p:/usr/share/nimble/regex -p:/usr/share/nimble/docopt -p:/usr/share/nimble/lapper -p:/usr/share/nimble/hts src/count_reads.nim
#nim c --nimcache:/build/hts-nim-tools-0.2.1/nimcache -p:/usr/share/nimble/unicodeplus -p:/usr/share/nimble/unicodedb -p:/usr/share/nimble/regex -p:/usr/share/nimble/docopt -p:/usr/share/nimble/lapper -p:/usr/lib/nim/pure -p:/usr/share/nimble/hts src/copy_number_sampler.nim
nim c --debuginfo:on --nimcache:/build/hts-nim-tools-0.2.1/nimcache --out:bin/hts-nim-tools -p:/usr/share/nimble/unicodeplus -p:/usr/share/nimble/unicodedb -p:/usr/share/nimble/regex -p:/usr/share/nimble/docopt -p:/usr/share/nimble/lapper  -p:/usr/share/nimble/kexpr -p:/usr/lib/nim/pure -p:/usr/share/nimble/hts src/hts_nim_tools.nim
Hint: used config file '/etc/nim/nim.cfg' [Conf]
Hint: used config file '/etc/nim/config.nims' [Conf]
........................................................................................................................................
/build/hts-nim-tools-0.2.1/src/bam_filter.nim(1, 8) Hint: duplicate import of 'os'; previous import here: /build/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(1, 8) [DuplicateModuleImport]
/build/hts-nim-tools-0.2.1/src/bam_filter.nim(2, 8) Hint: duplicate import of 'hts'; previous import here: /build/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(2, 8) [DuplicateModuleImport]
/build/hts-nim-tools-0.2.1/src/bam_filter.nim(3, 8) Hint: duplicate import of 'sequtils'; previous import here: /build/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(3, 8) [DuplicateModuleImport]
/build/hts-nim-tools-0.2.1/src/bam_filter.nim(4, 8) Hint: duplicate import of 'strutils'; previous import here: /build/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(4, 8) [DuplicateModuleImport]
/build/hts-nim-tools-0.2.1/src/bam_filter.nim(5, 8) Hint: duplicate import of 'tables'; previous import here: /build/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(5, 8) [DuplicateModuleImport]
/build/hts-nim-tools-0.2.1/src/bam_filter.nim(6, 8) Hint: duplicate import of 'algorithm'; previous import here: /build/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(6, 8) [DuplicateModuleImport]
/build/hts-nim-tools-0.2.1/src/bam_filter.nim(7, 8) Hint: duplicate import of 'docopt'; previous import here: /build/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(7, 8) [DuplicateModuleImport]
/build/hts-nim-tools-0.2.1/src/bam_filter.nim(8, 8) Hint: duplicate import of 'kexpr'; previous import here: /build/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(8, 8) [DuplicateModuleImport]
/build/hts-nim-tools-0.2.1/src/bam_filter.nim(10, 8) Hint: duplicate import of 'version'; previous import here: /build/hts-nim-tools-0.2.1/src/hts_nim_tools.nim(10, 8) [DuplicateModuleImport]
/build/hts-nim-tools-0.2.1/src/bam_filter.nim(53, 13) Warning: implicit conversion to 'cstring' from a non-const location: $args["<BAM-or-CRAM>"]; this will become a compile time error in the future [CStringConv]
/build/hts-nim-tools-0.2.1/src/bam_filter.nim(94, 42) Warning: implicit conversion to 'cstring' from a non-const location: "tag_" & itag; this will become a compile time error in the future [CStringConv]
/build/hts-nim-tools-0.2.1/src/bam_filter.nim(98, 43) Warning: implicit conversion to 'cstring' from a non-const location: "tag_" & itag; this will become a compile time error in the future [CStringConv]
.
/build/hts-nim-tools-0.2.1/src/count_reads.nim(1, 8) Hint: duplicate import of 'os'; previous import here: /build/hts-nim-tools-0.2.1/src/bam_filter.nim(1, 8) [DuplicateModuleImport]
/build/hts-nim-tools-0.2.1/src/count_reads.nim(2, 8) Hint: duplicate import of 'hts'; previous import here: /build/hts-nim-tools-0.2.1/src/bam_filter.nim(2, 8) [DuplicateModuleImport]
/build/hts-nim-tools-0.2.1/src/count_reads.nim(3, 8) Hint: duplicate import of 'docopt'; previous import here: /build/hts-nim-tools-0.2.1/src/bam_filter.nim(7, 8) [DuplicateModuleImport]
.
/build/hts-nim-tools-0.2.1/src/count_reads.nim(5, 8) Hint: duplicate import of 'strutils'; previous import here: /build/hts-nim-tools-0.2.1/src/bam_filter.nim(4, 8) [DuplicateModuleImport]
/build/hts-nim-tools-0.2.1/src/count_reads.nim(6, 8) Hint: duplicate import of 'tables'; previous import here: /build/hts-nim-tools-0.2.1/src/bam_filter.nim(5, 8) [DuplicateModuleImport]
/build/hts-nim-tools-0.2.1/src/count_reads.nim(7, 8) Hint: duplicate import of 'algorithm'; previous import here: /build/hts-nim-tools-0.2.1/src/bam_filter.nim(6, 8) [DuplicateModuleImport]
/build/hts-nim-tools-0.2.1/src/count_reads.nim(9, 8) Hint: duplicate import of 'version'; previous import here: /build/hts-nim-tools-0.2.1/src/bam_filter.nim(10, 8) [DuplicateModuleImport]
/build/hts-nim-tools-0.2.1/src/count_reads.nim(116, 13) Warning: implicit conversion to 'cstring' from a non-const location: $args["<BAM-or-CRAM>"]; this will become a compile time error in the future [CStringConv]
.
/build/hts-nim-tools-0.2.1/src/vcf_check.nim(1, 8) Hint: duplicate import of 'os'; previous import here: /build/hts-nim-tools-0.2.1/src/count_reads.nim(1, 8) [DuplicateModuleImport]
/build/hts-nim-tools-0.2.1/src/vcf_check.nim(2, 8) Hint: duplicate import of 'hts'; previous import here: /build/hts-nim-tools-0.2.1/src/count_reads.nim(2, 8) [DuplicateModuleImport]
/build/hts-nim-tools-0.2.1/src/vcf_check.nim(3, 8) Hint: duplicate import of 'docopt'; previous import here: /build/hts-nim-tools-0.2.1/src/count_reads.nim(3, 8) [DuplicateModuleImport]
/build/hts-nim-tools-0.2.1/src/vcf_check.nim(4, 8) Hint: duplicate import of 'strutils'; previous import here: /build/hts-nim-tools-0.2.1/src/count_reads.nim(5, 8) [DuplicateModuleImport]
/build/hts-nim-tools-0.2.1/src/vcf_check.nim(6, 8) Hint: duplicate import of 'version'; previous import here: /build/hts-nim-tools-0.2.1/src/count_reads.nim(9, 8) [DuplicateModuleImport]
.
/build/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(1, 8) Hint: duplicate import of 'os'; previous import here: /build/hts-nim-tools-0.2.1/src/vcf_check.nim(1, 8) [DuplicateModuleImport]
....
/build/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(3, 8) Hint: duplicate import of 'hts'; previous import here: /build/hts-nim-tools-0.2.1/src/vcf_check.nim(2, 8) [DuplicateModuleImport]
/build/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(4, 8) Hint: duplicate import of 'docopt'; previous import here: /build/hts-nim-tools-0.2.1/src/vcf_check.nim(3, 8) [DuplicateModuleImport]
/build/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(5, 8) Hint: duplicate import of 'lapper'; previous import here: /build/hts-nim-tools-0.2.1/src/count_reads.nim(4, 8) [DuplicateModuleImport]
/build/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(6, 8) Hint: duplicate import of 'strutils'; previous import here: /build/hts-nim-tools-0.2.1/src/vcf_check.nim(4, 8) [DuplicateModuleImport]
/build/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(7, 8) Hint: duplicate import of 'tables'; previous import here: /build/hts-nim-tools-0.2.1/src/count_reads.nim(6, 8) [DuplicateModuleImport]
/build/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(8, 8) Hint: duplicate import of 'algorithm'; previous import here: /build/hts-nim-tools-0.2.1/src/count_reads.nim(7, 8) [DuplicateModuleImport]
/build/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(10, 8) Hint: duplicate import of 'version'; previous import here: /build/hts-nim-tools-0.2.1/src/vcf_check.nim(6, 8) [DuplicateModuleImport]
/build/hts-nim-tools-0.2.1/src/copy_number_sampler.nim(130, 13) Warning: implicit conversion to 'cstring' from a non-const location: $args["<BAM-or-CRAM>"]; this will become a compile time error in the future [CStringConv]
CC: kexpr-c
CC: ../../../usr/lib/nim/lib/std/private/digitsutils.nim
CC: ../../../usr/lib/nim/lib/system/assertions.nim
CC: ../../../usr/lib/nim/lib/system/formatfloat.nim
CC: ../../../usr/lib/nim/lib/system/dollars.nim
CC: ../../../usr/lib/nim/lib/system/io.nim
CC: ../../../usr/lib/nim/lib/system.nim
CC: ../../../usr/lib/nim/lib/pure/parseutils.nim
CC: ../../../usr/lib/nim/lib/pure/bitops.nim
CC: ../../../usr/lib/nim/lib/pure/math.nim
CC: ../../../usr/lib/nim/lib/pure/algorithm.nim
CC: ../../../usr/lib/nim/lib/pure/unicode.nim
CC: ../../../usr/lib/nim/lib/pure/strutils.nim
CC: ../../../usr/lib/nim/lib/pure/times.nim
CC: ../../../usr/lib/nim/lib/pure/os.nim
CC: ../../../usr/share/nimble/hts/hts/private/hts_concat.nim
CC: ../../../usr/lib/nim/lib/pure/strformat.nim
CC: ../../../usr/share/nimble/hts/hts/bam.nim
CC: ../../../usr/lib/nim/lib/pure/collections/sequtils.nim
CC: ../../../usr/share/nimble/hts/hts/vcf.nim
CC: ../../../usr/share/nimble/hts/hts.nim
CC: ../../../usr/lib/nim/lib/pure/hashes.nim
CC: ../../../usr/lib/nim/lib/pure/collections/tables.nim
CC: ../../../usr/lib/nim/lib/pure/collections/sets.nim
CC: ../../../usr/share/nimble/unicodedb/unicodedb/properties_data.nim
CC: ../../../usr/share/nimble/unicodedb/unicodedb/properties.nim
CC: ../../../usr/share/nimble/regex/regex/common.nim
CC: ../../../usr/share/nimble/regex/regex/nodetype.nim
CC: ../../../usr/share/nimble/regex/regex/exptransformation.nim
CC: ../../../usr/share/nimble/regex/regex/nfa.nim
CC: ../../../usr/share/nimble/unicodedb/unicodedb/types_data.nim
CC: ../../../usr/share/nimble/unicodedb/unicodedb/types.nim
CC: ../../../usr/share/nimble/unicodeplus/unicodeplus.nim
CC: ../../../usr/share/nimble/regex/regex/nodematch.nim
CC: ../../../usr/share/nimble/regex/regex/litopt.nim
CC: ../../../usr/share/nimble/regex/regex/nfatype.nim
CC: ../../../usr/share/nimble/regex/regex/nfafindall.nim
CC: ../../../usr/share/nimble/regex/regex/nfamatch.nim
CC: ../../../usr/share/nimble/docopt/docopt/util.nim
CC: ../../../usr/share/nimble/docopt/docopt.nim
CC: ../../../usr/share/nimble/kexpr/kexpr.nim
CC: version.nim
CC: ../../../usr/share/nimble/lapper/lapper.nim
CC: ../../../usr/lib/nim/lib/std/sysrand.nim
CC: ../../../usr/lib/nim/lib/pure/random.nim
CC: hts_nim_tools.nim
Hint:  [Link]
Hint: gc: refc; opt: none (DEBUG BUILD, `-d:release` generates faster code)
87717 lines; 18.177s; 180.199MiB peakmem; proj: /build/hts-nim-tools-0.2.1/src/hts_nim_tools.nim; out: /build/hts-nim-tools-0.2.1/bin/hts-nim-tools [SuccessX]
help2man --no-info --no-discard-stderr --help-option="-h" ./bin/hts-nim-tools > debian/hts-nim-tools.1
make[1]: Leaving directory '/build/hts-nim-tools-0.2.1'
   create-stamp debian/debhelper-build-stamp
   dh_prep
	rm -f -- debian/hts-nim-tools.substvars
	rm -fr -- debian/.debhelper/generated/hts-nim-tools/ debian/hts-nim-tools/ debian/tmp/
   dh_installdirs
	install -m0755 -d debian/hts-nim-tools/usr/bin
   dh_auto_install --destdir=debian/hts-nim-tools/
	install -m0755 -d /build/hts-nim-tools-0.2.1/debian/hts-nim-tools
   dh_install
	install -m0755 -d debian/hts-nim-tools/usr/bin/
	cp --reflink=auto -a ./bin/hts-nim-tools debian/hts-nim-tools/usr/bin//
   dh_installdocs
	install -m0755 -d debian/hts-nim-tools/usr/share/doc/hts-nim-tools
	install -p -m0644 debian/copyright debian/hts-nim-tools/usr/share/doc/hts-nim-tools/copyright
   dh_installchangelogs
	install -m0755 -d debian/hts-nim-tools/usr/share/doc/hts-nim-tools
	install -p -m0644 debian/.debhelper/generated/hts-nim-tools/dh_installchangelogs.dch.trimmed debian/hts-nim-tools/usr/share/doc/hts-nim-tools/changelog.Debian
   dh_installman
	install -m0755 -d debian/hts-nim-tools/usr/share/man/man1/
	install -p -m0644 ./debian/hts-nim-tools.1 debian/hts-nim-tools/usr/share/man/man1/hts-nim-tools.1
	man-recode --to-code UTF-8 --suffix .dh-new debian/hts-nim-tools/usr/share/man/man1/hts-nim-tools.1
	mv debian/hts-nim-tools/usr/share/man/man1/hts-nim-tools.1.dh-new debian/hts-nim-tools/usr/share/man/man1/hts-nim-tools.1
	chmod 0644 -- debian/hts-nim-tools/usr/share/man/man1/hts-nim-tools.1
   dh_lintian
	install -m0755 -d debian/hts-nim-tools/usr/share/lintian/overrides
	install -p -m0644 debian/lintian-overrides debian/hts-nim-tools/usr/share/lintian/overrides/hts-nim-tools
   dh_perl
   dh_link
	install -m0755 -d debian/hts-nim-tools/usr/bin
	rm -f debian/hts-nim-tools/usr/bin/hts_nim_tools
	ln -s hts-nim-tools debian/hts-nim-tools/usr/bin/hts_nim_tools
   dh_strip_nondeterminism
   dh_compress
	cd debian/hts-nim-tools
	chmod a-x usr/share/doc/hts-nim-tools/changelog.Debian usr/share/man/man1/hts-nim-tools.1
	gzip -9nf usr/share/doc/hts-nim-tools/changelog.Debian usr/share/man/man1/hts-nim-tools.1
	cd '/build/hts-nim-tools-0.2.1'
   dh_fixperms
	find debian/hts-nim-tools ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
	find debian/hts-nim-tools/usr/share/doc -type f -a -true -a ! -regex 'debian/hts-nim-tools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/hts-nim-tools/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
	find debian/hts-nim-tools/usr/share/man debian/hts-nim-tools/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/hts-nim-tools -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/hts-nim-tools/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
   dh_missing
   debian/rules override_dh_dwz
make[1]: Entering directory '/build/hts-nim-tools-0.2.1'
echo "I: not executing dwz, which fails because of Unknown DWARF DW_OP_0"
I: not executing dwz, which fails because of Unknown DWARF DW_OP_0
make[1]: Leaving directory '/build/hts-nim-tools-0.2.1'
   dh_strip -a
	install -m0755 -d debian/.debhelper/hts-nim-tools/dbgsym-root/usr/lib/debug/.build-id/dc
	objcopy --only-keep-debug --compress-debug-sections debian/hts-nim-tools/usr/bin/hts-nim-tools debian/.debhelper/hts-nim-tools/dbgsym-root/usr/lib/debug/.build-id/dc/e6e4d0e4f740e27cb75f6967b5d6d37b9d7dff.debug
	chmod 0644 -- debian/.debhelper/hts-nim-tools/dbgsym-root/usr/lib/debug/.build-id/dc/e6e4d0e4f740e27cb75f6967b5d6d37b9d7dff.debug
	strip --remove-section=.comment --remove-section=.note debian/hts-nim-tools/usr/bin/hts-nim-tools
	objcopy --add-gnu-debuglink debian/.debhelper/hts-nim-tools/dbgsym-root/usr/lib/debug/.build-id/dc/e6e4d0e4f740e27cb75f6967b5d6d37b9d7dff.debug debian/hts-nim-tools/usr/bin/hts-nim-tools
	install -m0755 -d debian/.debhelper/hts-nim-tools/dbgsym-root/usr/share/doc
	ln -s hts-nim-tools debian/.debhelper/hts-nim-tools/dbgsym-root/usr/share/doc/hts-nim-tools-dbgsym
	install -m0755 -d debian/.debhelper/hts-nim-tools
   dh_makeshlibs -a
	rm -f debian/hts-nim-tools/DEBIAN/shlibs
   dh_shlibdeps -a
	install -m0755 -d debian/hts-nim-tools/DEBIAN
	dpkg-shlibdeps -Tdebian/hts-nim-tools.substvars debian/hts-nim-tools/usr/bin/hts-nim-tools
   dh_installdeb
	install -m0755 -d debian/hts-nim-tools/DEBIAN
   dh_gencontrol
	install -m0755 -d debian/hts-nim-tools/DEBIAN
	echo misc:Depends= >> debian/hts-nim-tools.substvars
	echo misc:Pre-Depends= >> debian/hts-nim-tools.substvars
	install -m0755 -d debian/.debhelper/hts-nim-tools/dbgsym-root/DEBIAN
	dpkg-gencontrol -phts-nim-tools -ldebian/changelog -Tdebian/hts-nim-tools.substvars -Pdebian/.debhelper/hts-nim-tools/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=hts-nim-tools-dbgsym "-DDepends=hts-nim-tools (= \${binary:Version})" "-DDescription=debug symbols for hts-nim-tools" -DBuild-Ids=dce6e4d0e4f740e27cb75f6967b5d6d37b9d7dff -DSection=debug -UMulti-Arch -UReplaces -UBreaks
	chmod 0644 -- debian/.debhelper/hts-nim-tools/dbgsym-root/DEBIAN/control
	dpkg-gencontrol -phts-nim-tools -ldebian/changelog -Tdebian/hts-nim-tools.substvars -Pdebian/hts-nim-tools
	chmod 0644 -- debian/hts-nim-tools/DEBIAN/control
   dh_md5sums
	install -m0755 -d debian/hts-nim-tools/DEBIAN
	cd debian/hts-nim-tools >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
	chmod 0644 -- debian/hts-nim-tools/DEBIAN/md5sums
	install -m0755 -d debian/.debhelper/hts-nim-tools/dbgsym-root/DEBIAN
	cd debian/.debhelper/hts-nim-tools/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
	chmod 0644 -- debian/.debhelper/hts-nim-tools/dbgsym-root/DEBIAN/md5sums
   dh_builddeb
	dpkg-deb --root-owner-group --build debian/hts-nim-tools ..
	dpkg-deb --root-owner-group --build debian/.debhelper/hts-nim-tools/dbgsym-root ..
dpkg-deb: building package 'hts-nim-tools-dbgsym' in '../hts-nim-tools-dbgsym_0.2.1-1_amd64.deb'.
dpkg-deb: building package 'hts-nim-tools' in '../hts-nim-tools_0.2.1-1_amd64.deb'.
 dpkg-genbuildinfo --build=binary -O../hts-nim-tools_0.2.1-1_amd64.buildinfo
 dpkg-genchanges --build=binary -O../hts-nim-tools_0.2.1-1_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/991956 and its subdirectories
I: Current time: Mon May 15 20:31:12 -12 2023
I: pbuilder-time-stamp: 1684225872