I: pbuilder: network access will be disabled during build
I: Current time: Wed Jul 10 09:40:22 -12 2024
I: pbuilder-time-stamp: 1720647622
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [libbio-mage-perl_20030502.3-6.dsc]
I: copying [./libbio-mage-perl_20030502.3.orig.tar.gz]
I: copying [./libbio-mage-perl_20030502.3-6.debian.tar.xz]
I: Extracting source
gpgv: Signature made Thu Nov 26 22:42:19 2020 -12
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./libbio-mage-perl_20030502.3-6.dsc: no acceptable signature found
dpkg-source: info: extracting libbio-mage-perl in libbio-mage-perl-20030502.3
dpkg-source: info: unpacking libbio-mage-perl_20030502.3.orig.tar.gz
dpkg-source: info: unpacking libbio-mage-perl_20030502.3-6.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying spelling.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/3868097/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='amd64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 '
DISTRIBUTION='bookworm'
HOME='/root'
HOST_ARCH='amd64'
IFS='
'
INVOCATION_ID='941e61a515d743f292907d76231b9932'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='3868097'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.B8noLra8/pbuilderrc_FvdS --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.B8noLra8/b1 --logfile b1/build.log libbio-mage-perl_20030502.3-6.dsc'
SUDO_GID='110'
SUDO_UID='105'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://85.184.249.68:3128'
I: uname -a
Linux ionos5-amd64 6.1.0-0.deb11.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.20-2~bpo11+1 (2023-04-23) x86_64 GNU/Linux
I: ls -l /bin
total 5632
-rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash
-rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2
-rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep
-rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2
-rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore
-rwxr-xr-x 1 root root 44016 Sep 20 2022 cat
-rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp
-rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod
-rwxr-xr-x 1 root root 72752 Sep 20 2022 chown
-rwxr-xr-x 1 root root 151152 Sep 20 2022 cp
-rwxr-xr-x 1 root root 125640 Jan 5 2023 dash
-rwxr-xr-x 1 root root 121904 Sep 20 2022 date
-rwxr-xr-x 1 root root 89240 Sep 20 2022 dd
-rwxr-xr-x 1 root root 102200 Sep 20 2022 df
-rwxr-xr-x 1 root root 151344 Sep 20 2022 dir
-rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg
lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname
-rwxr-xr-x 1 root root 43856 Sep 20 2022 echo
-rwxr-xr-x 1 root root 41 Jan 24 2023 egrep
-rwxr-xr-x 1 root root 35664 Sep 20 2022 false
-rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep
-rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt
-rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount
-rwxr-xr-x 1 root root 203152 Jan 24 2023 grep
-rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip
-rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe
-rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip
-rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname
-rwxr-xr-x 1 root root 72824 Sep 20 2022 ln
-rwxr-xr-x 1 root root 53024 Mar 23 2023 login
-rwxr-xr-x 1 root root 151344 Sep 20 2022 ls
-rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk
-rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir
-rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod
-rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp
-rwxr-xr-x 1 root root 59712 Mar 22 2023 more
-rwsr-xr-x 1 root root 59704 Mar 22 2023 mount
-rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint
-rwxr-xr-x 1 root root 142968 Sep 20 2022 mv
lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd
lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash
-rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink
-rwxr-xr-x 1 root root 72752 Sep 20 2022 rm
-rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir
-rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts
-rwxr-xr-x 1 root root 126424 Jan 5 2023 sed
lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash
-rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep
-rwxr-xr-x 1 root root 85008 Sep 20 2022 stty
-rwsr-xr-x 1 root root 72000 Mar 22 2023 su
-rwxr-xr-x 1 root root 39824 Sep 20 2022 sync
-rwxr-xr-x 1 root root 531984 Apr 6 2023 tar
-rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile
-rwxr-xr-x 1 root root 109616 Sep 20 2022 touch
-rwxr-xr-x 1 root root 35664 Sep 20 2022 true
-rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server
-rwsr-xr-x 1 root root 35128 Mar 22 2023 umount
-rwxr-xr-x 1 root root 43888 Sep 20 2022 uname
-rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress
-rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir
-rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl
lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat
-rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp
-rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff
-rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep
-rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep
-rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce
-rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep
-rwxr-xr-x 1 root root 2206 Apr 9 2022 zless
-rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore
-rwxr-xr-x 1 root root 4577 Apr 9 2022 znew
I: user script /srv/workspace/pbuilder/3868097/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), libtie-ixhash-perl
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19591 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on libtie-ixhash-perl; however:
Package libtie-ixhash-perl is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtie-ixhash-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget
0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded.
Need to get 18.7 MB of archives. After unpacking 72.4 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 2 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB]
Get: 3 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB]
Get: 4 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB]
Get: 5 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB]
Get: 6 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB]
Get: 7 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB]
Get: 8 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB]
Get: 9 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB]
Get: 10 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB]
Get: 11 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB]
Get: 12 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB]
Get: 13 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get: 15 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB]
Get: 16 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 17 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB]
Get: 18 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 19 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 20 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B]
Get: 21 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 22 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 23 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB]
Get: 24 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB]
Get: 25 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB]
Get: 26 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB]
Get: 27 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB]
Get: 28 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 29 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 30 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB]
Get: 31 http://deb.debian.org/debian bookworm/main amd64 libtie-ixhash-perl all 1.23-4 [11.7 kB]
Fetched 18.7 MB in 1s (21.4 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sensible-utils.
(Reading database ...
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(Reading database ... 19591 files and directories currently installed.)
Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ...
Unpacking sensible-utils (0.0.17+nmu1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_amd64.deb ...
Unpacking libmagic-mgc (1:5.44-3) ...
Selecting previously unselected package libmagic1:amd64.
Preparing to unpack .../02-libmagic1_1%3a5.44-3_amd64.deb ...
Unpacking libmagic1:amd64 (1:5.44-3) ...
Selecting previously unselected package file.
Preparing to unpack .../03-file_1%3a5.44-3_amd64.deb ...
Unpacking file (1:5.44-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../04-gettext-base_0.21-12_amd64.deb ...
Unpacking gettext-base (0.21-12) ...
Selecting previously unselected package libuchardet0:amd64.
Preparing to unpack .../05-libuchardet0_0.0.7-1_amd64.deb ...
Unpacking libuchardet0:amd64 (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../06-groff-base_1.22.4-10_amd64.deb ...
Unpacking groff-base (1.22.4-10) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_amd64.deb ...
Unpacking bsdextrautils (2.38.1-5+b1) ...
Selecting previously unselected package libpipeline1:amd64.
Preparing to unpack .../08-libpipeline1_1.5.7-1_amd64.deb ...
Unpacking libpipeline1:amd64 (1.5.7-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../09-man-db_2.11.2-2_amd64.deb ...
Unpacking man-db (2.11.2-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../10-m4_1.4.19-3_amd64.deb ...
Unpacking m4 (1.4.19-3) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../11-autoconf_2.71-3_all.deb ...
Unpacking autoconf (2.71-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
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Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
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Preparing to unpack .../14-autopoint_0.21-12_all.deb ...
Unpacking autopoint (0.21-12) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ...
Unpacking libdebhelper-perl (13.11.4) ...
Selecting previously unselected package libtool.
Preparing to unpack .../16-libtool_2.4.7-5_all.deb ...
Unpacking libtool (2.4.7-5) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../17-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ...
Unpacking libsub-override-perl (0.09-4) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.13.1-1) ...
Selecting previously unselected package libelf1:amd64.
Preparing to unpack .../22-libelf1_0.188-2.1_amd64.deb ...
Unpacking libelf1:amd64 (0.188-2.1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../23-dwz_0.15-1_amd64.deb ...
Unpacking dwz (0.15-1) ...
Selecting previously unselected package libicu72:amd64.
Preparing to unpack .../24-libicu72_72.1-3_amd64.deb ...
Unpacking libicu72:amd64 (72.1-3) ...
Selecting previously unselected package libxml2:amd64.
Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.2_amd64.deb ...
Unpacking libxml2:amd64 (2.9.14+dfsg-1.2) ...
Selecting previously unselected package gettext.
Preparing to unpack .../26-gettext_0.21-12_amd64.deb ...
Unpacking gettext (0.21-12) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../29-debhelper_13.11.4_all.deb ...
Unpacking debhelper (13.11.4) ...
Selecting previously unselected package libtie-ixhash-perl.
Preparing to unpack .../30-libtie-ixhash-perl_1.23-4_all.deb ...
Unpacking libtie-ixhash-perl (1.23-4) ...
Setting up libpipeline1:amd64 (1.5.7-1) ...
Setting up libtie-ixhash-perl (1.23-4) ...
Setting up libicu72:amd64 (72.1-3) ...
Setting up bsdextrautils (2.38.1-5+b1) ...
Setting up libmagic-mgc (1:5.44-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.11.4) ...
Setting up libmagic1:amd64 (1:5.44-3) ...
Setting up gettext-base (0.21-12) ...
Setting up m4 (1.4.19-3) ...
Setting up file (1:5.44-3) ...
Setting up autotools-dev (20220109.1) ...
Setting up autopoint (0.21-12) ...
Setting up autoconf (2.71-3) ...
Setting up sensible-utils (0.0.17+nmu1) ...
Setting up libuchardet0:amd64 (0.0.7-1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libelf1:amd64 (0.188-2.1) ...
Setting up libxml2:amd64 (2.9.14+dfsg-1.2) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up gettext (0.21-12) ...
Setting up libtool (2.4.7-5) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.22.4-10) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.11.2-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up debhelper (13.11.4) ...
Processing triggers for libc-bin (2.36-9) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/libbio-mage-perl-20030502.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-mage-perl_20030502.3-6_source.changes
dpkg-buildpackage: info: source package libbio-mage-perl
dpkg-buildpackage: info: source version 20030502.3-6
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
debian/rules clean
dh clean
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
/usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -ffile-prefix-map=/build/libbio-mage-perl-20030502.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/build/libbio-mage-perl-20030502.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro"
Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for Bio::MAGE
Writing MYMETA.yml and MYMETA.json
dh_auto_build
make -j16
make[1]: Entering directory '/build/libbio-mage-perl-20030502.3'
cp MAGE/BQS.pm blib/lib/Bio/MAGE/BQS.pm
cp MAGE/Array/ArrayManufactureDeviation.pm blib/lib/Bio/MAGE/Array/ArrayManufactureDeviation.pm
cp MAGE/Array/ArrayGroup.pm blib/lib/Bio/MAGE/Array/ArrayGroup.pm
cp MAGE/Array.pm blib/lib/Bio/MAGE/Array.pm
cp MAGE/AuditAndSecurity/Person.pm blib/lib/Bio/MAGE/AuditAndSecurity/Person.pm
cp MAGE/AuditAndSecurity/Contact.pm blib/lib/Bio/MAGE/AuditAndSecurity/Contact.pm
cp MAGE/Array/PositionDelta.pm blib/lib/Bio/MAGE/Array/PositionDelta.pm
cp MAGE/AuditAndSecurity/Security.pm blib/lib/Bio/MAGE/AuditAndSecurity/Security.pm
cp MAGE/AuditAndSecurity/SecurityGroup.pm blib/lib/Bio/MAGE/AuditAndSecurity/SecurityGroup.pm
cp MAGE/Array/FeatureDefect.pm blib/lib/Bio/MAGE/Array/FeatureDefect.pm
cp MAGE/Association.pm blib/lib/Bio/MAGE/Association.pm
cp MAGE/Array/ManufactureLIMS.pm blib/lib/Bio/MAGE/Array/ManufactureLIMS.pm
cp MAGE/ArrayDesign/DesignElementGroup.pm blib/lib/Bio/MAGE/ArrayDesign/DesignElementGroup.pm
cp MAGE/ArrayDesign/ArrayDesign.pm blib/lib/Bio/MAGE/ArrayDesign/ArrayDesign.pm
cp MAGE/Array/ZoneDefect.pm blib/lib/Bio/MAGE/Array/ZoneDefect.pm
cp MAGE/Array/Fiducial.pm blib/lib/Bio/MAGE/Array/Fiducial.pm
cp MAGE/ArrayDesign/CompositeGroup.pm blib/lib/Bio/MAGE/ArrayDesign/CompositeGroup.pm
cp MAGE/Array/ManufactureLIMSBiomaterial.pm blib/lib/Bio/MAGE/Array/ManufactureLIMSBiomaterial.pm
cp MAGE/ArrayDesign.pm blib/lib/Bio/MAGE/ArrayDesign.pm
cp MAGE/ArrayDesign/ZoneGroup.pm blib/lib/Bio/MAGE/ArrayDesign/ZoneGroup.pm
cp MAGE/BioAssay.pm blib/lib/Bio/MAGE/BioAssay.pm
cp MAGE/ArrayDesign/ReporterGroup.pm blib/lib/Bio/MAGE/ArrayDesign/ReporterGroup.pm
cp MAGE/Base.pm blib/lib/Bio/MAGE/Base.pm
cp MAGE/ArrayDesign/Zone.pm blib/lib/Bio/MAGE/ArrayDesign/Zone.pm
cp MAGE/ArrayDesign/FeatureGroup.pm blib/lib/Bio/MAGE/ArrayDesign/FeatureGroup.pm
cp MAGE/ArrayDesign/ZoneLayout.pm blib/lib/Bio/MAGE/ArrayDesign/ZoneLayout.pm
cp MAGE.pm blib/lib/Bio/MAGE.pm
cp MAGE/BQS/BibliographicReference.pm blib/lib/Bio/MAGE/BQS/BibliographicReference.pm
cp MAGE/AuditAndSecurity.pm blib/lib/Bio/MAGE/AuditAndSecurity.pm
cp MAGE/Array/ArrayManufacture.pm blib/lib/Bio/MAGE/Array/ArrayManufacture.pm
cp MAGE/ArrayDesign/PhysicalArrayDesign.pm blib/lib/Bio/MAGE/ArrayDesign/PhysicalArrayDesign.pm
cp MAGE/AuditAndSecurity/Audit.pm blib/lib/Bio/MAGE/AuditAndSecurity/Audit.pm
cp MAGE/Array/Array.pm blib/lib/Bio/MAGE/Array/Array.pm
cp MAGE/AuditAndSecurity/Organization.pm blib/lib/Bio/MAGE/AuditAndSecurity/Organization.pm
cp MAGE/BioAssay/DerivedBioAssay.pm blib/lib/Bio/MAGE/BioAssay/DerivedBioAssay.pm
cp MAGE/BioAssayData.pm blib/lib/Bio/MAGE/BioAssayData.pm
cp MAGE/BioAssayData/BioAssayDatum.pm blib/lib/Bio/MAGE/BioAssayData/BioAssayDatum.pm
cp MAGE/BioAssay/BioAssay.pm blib/lib/Bio/MAGE/BioAssay/BioAssay.pm
cp MAGE/BioAssayData/DesignElementMap.pm blib/lib/Bio/MAGE/BioAssayData/DesignElementMap.pm
cp MAGE/BioAssay/Hybridization.pm blib/lib/Bio/MAGE/BioAssay/Hybridization.pm
cp MAGE/BioAssayData/DesignElementMapping.pm blib/lib/Bio/MAGE/BioAssayData/DesignElementMapping.pm
cp MAGE/BioAssay/MeasuredBioAssay.pm blib/lib/Bio/MAGE/BioAssay/MeasuredBioAssay.pm
cp MAGE/BioAssayData/QuantitationTypeDimension.pm blib/lib/Bio/MAGE/BioAssayData/QuantitationTypeDimension.pm
cp MAGE/BioAssay/ImageAcquisition.pm blib/lib/Bio/MAGE/BioAssay/ImageAcquisition.pm
cp MAGE/BioAssayData/BioAssayMapping.pm blib/lib/Bio/MAGE/BioAssayData/BioAssayMapping.pm
cp MAGE/BioAssayData/DesignElementDimension.pm blib/lib/Bio/MAGE/BioAssayData/DesignElementDimension.pm
cp MAGE/BioAssayData/DerivedBioAssayData.pm blib/lib/Bio/MAGE/BioAssayData/DerivedBioAssayData.pm
cp MAGE/BioAssayData/BioDataValues.pm blib/lib/Bio/MAGE/BioAssayData/BioDataValues.pm
cp MAGE/BioAssay/Channel.pm blib/lib/Bio/MAGE/BioAssay/Channel.pm
cp MAGE/BioAssay/BioAssayTreatment.pm blib/lib/Bio/MAGE/BioAssay/BioAssayTreatment.pm
cp MAGE/BioAssayData/BioAssayMap.pm blib/lib/Bio/MAGE/BioAssayData/BioAssayMap.pm
cp MAGE/BioAssay/Image.pm blib/lib/Bio/MAGE/BioAssay/Image.pm
cp MAGE/BioAssayData/BioAssayDimension.pm blib/lib/Bio/MAGE/BioAssayData/BioAssayDimension.pm
cp MAGE/BioAssay/BioAssayCreation.pm blib/lib/Bio/MAGE/BioAssay/BioAssayCreation.pm
cp MAGE/BioAssay/PhysicalBioAssay.pm blib/lib/Bio/MAGE/BioAssay/PhysicalBioAssay.pm
cp MAGE/BioAssayData/BioDataCube.pm blib/lib/Bio/MAGE/BioAssayData/BioDataCube.pm
cp MAGE/BioAssayData/FeatureDimension.pm blib/lib/Bio/MAGE/BioAssayData/FeatureDimension.pm
cp MAGE/BioAssayData/BioDataTuples.pm blib/lib/Bio/MAGE/BioAssayData/BioDataTuples.pm
cp MAGE/BioAssay/FeatureExtraction.pm blib/lib/Bio/MAGE/BioAssay/FeatureExtraction.pm
cp MAGE/BioAssayData/BioAssayData.pm blib/lib/Bio/MAGE/BioAssayData/BioAssayData.pm
cp MAGE/BioAssayData/CompositeSequenceDimension.pm blib/lib/Bio/MAGE/BioAssayData/CompositeSequenceDimension.pm
cp MAGE/BioAssayData/MeasuredBioAssayData.pm blib/lib/Bio/MAGE/BioAssayData/MeasuredBioAssayData.pm
cp MAGE/DesignElement.pm blib/lib/Bio/MAGE/DesignElement.pm
cp MAGE/Description.pm blib/lib/Bio/MAGE/Description.pm
cp MAGE/BioMaterial.pm blib/lib/Bio/MAGE/BioMaterial.pm
cp MAGE/BioMaterial/LabeledExtract.pm blib/lib/Bio/MAGE/BioMaterial/LabeledExtract.pm
cp MAGE/BioAssayData/QuantitationTypeMap.pm blib/lib/Bio/MAGE/BioAssayData/QuantitationTypeMap.pm
cp MAGE/Description/Database.pm blib/lib/Bio/MAGE/Description/Database.pm
cp MAGE/BioMaterial/Compound.pm blib/lib/Bio/MAGE/BioMaterial/Compound.pm
cp MAGE/BioAssayData/Transformation.pm blib/lib/Bio/MAGE/BioAssayData/Transformation.pm
cp MAGE/BioMaterial/CompoundMeasurement.pm blib/lib/Bio/MAGE/BioMaterial/CompoundMeasurement.pm
cp MAGE/BioMaterial/BioMaterialMeasurement.pm blib/lib/Bio/MAGE/BioMaterial/BioMaterialMeasurement.pm
cp MAGE/Description/Description.pm blib/lib/Bio/MAGE/Description/Description.pm
cp MAGE/BioMaterial/BioMaterial.pm blib/lib/Bio/MAGE/BioMaterial/BioMaterial.pm
cp MAGE/BioSequence/SeqFeature.pm blib/lib/Bio/MAGE/BioSequence/SeqFeature.pm
cp MAGE/BioEvent.pm blib/lib/Bio/MAGE/BioEvent.pm
cp MAGE/BioAssayData/QuantitationTypeMapping.pm blib/lib/Bio/MAGE/BioAssayData/QuantitationTypeMapping.pm
cp MAGE/Description/OntologyEntry.pm blib/lib/Bio/MAGE/Description/OntologyEntry.pm
cp MAGE/BioEvent/BioEvent.pm blib/lib/Bio/MAGE/BioEvent/BioEvent.pm
cp MAGE/BioEvent/Map.pm blib/lib/Bio/MAGE/BioEvent/Map.pm
cp MAGE/BioMaterial/BioSource.pm blib/lib/Bio/MAGE/BioMaterial/BioSource.pm
cp MAGE/BioSequence/SeqFeatureLocation.pm blib/lib/Bio/MAGE/BioSequence/SeqFeatureLocation.pm
cp MAGE/BioMaterial/Treatment.pm blib/lib/Bio/MAGE/BioMaterial/Treatment.pm
cp MAGE/BioMaterial/BioSample.pm blib/lib/Bio/MAGE/BioMaterial/BioSample.pm
cp MAGE/DesignElement/CompositePosition.pm blib/lib/Bio/MAGE/DesignElement/CompositePosition.pm
cp MAGE/Description/ExternalReference.pm blib/lib/Bio/MAGE/Description/ExternalReference.pm
cp MAGE/BioSequence.pm blib/lib/Bio/MAGE/BioSequence.pm
cp MAGE/DesignElement/CompositeCompositeMap.pm blib/lib/Bio/MAGE/DesignElement/CompositeCompositeMap.pm
cp MAGE/Describable.pm blib/lib/Bio/MAGE/Describable.pm
cp MAGE/BioSequence/BioSequence.pm blib/lib/Bio/MAGE/BioSequence/BioSequence.pm
cp MAGE/Description/DatabaseEntry.pm blib/lib/Bio/MAGE/Description/DatabaseEntry.pm
cp MAGE/BioAssayData/ReporterDimension.pm blib/lib/Bio/MAGE/BioAssayData/ReporterDimension.pm
cp MAGE/BioSequence/SequencePosition.pm blib/lib/Bio/MAGE/BioSequence/SequencePosition.pm
cp MAGE/HigherLevelAnalysis/BioAssayDataCluster.pm blib/lib/Bio/MAGE/HigherLevelAnalysis/BioAssayDataCluster.pm
cp MAGE/Measurement/DistanceUnit.pm blib/lib/Bio/MAGE/Measurement/DistanceUnit.pm
cp MAGE/Measurement/QuantityUnit.pm blib/lib/Bio/MAGE/Measurement/QuantityUnit.pm
cp MAGE/HigherLevelAnalysis.pm blib/lib/Bio/MAGE/HigherLevelAnalysis.pm
cp MAGE/DesignElement/FeatureInformation.pm blib/lib/Bio/MAGE/DesignElement/FeatureInformation.pm
cp MAGE/Experiment/FactorValue.pm blib/lib/Bio/MAGE/Experiment/FactorValue.pm
cp MAGE/Measurement.pm blib/lib/Bio/MAGE/Measurement.pm
cp MAGE/DesignElement/CompositeSequence.pm blib/lib/Bio/MAGE/DesignElement/CompositeSequence.pm
cp MAGE/DesignElement/FeatureReporterMap.pm blib/lib/Bio/MAGE/DesignElement/FeatureReporterMap.pm
cp MAGE/Identifiable.pm blib/lib/Bio/MAGE/Identifiable.pm
cp MAGE/DesignElement/Position.pm blib/lib/Bio/MAGE/DesignElement/Position.pm
cp MAGE/DesignElement/Reporter.pm blib/lib/Bio/MAGE/DesignElement/Reporter.pm
cp MAGE/Measurement/Measurement.pm blib/lib/Bio/MAGE/Measurement/Measurement.pm
cp MAGE/HigherLevelAnalysis/NodeValue.pm blib/lib/Bio/MAGE/HigherLevelAnalysis/NodeValue.pm
cp MAGE/DesignElement/Feature.pm blib/lib/Bio/MAGE/DesignElement/Feature.pm
cp MAGE/DesignElement/FeatureLocation.pm blib/lib/Bio/MAGE/DesignElement/FeatureLocation.pm
cp MAGE/DesignElement/DesignElement.pm blib/lib/Bio/MAGE/DesignElement/DesignElement.pm
cp MAGE/Experiment/Experiment.pm blib/lib/Bio/MAGE/Experiment/Experiment.pm
cp MAGE/Measurement/ConcentrationUnit.pm blib/lib/Bio/MAGE/Measurement/ConcentrationUnit.pm
cp MAGE/Measurement/MassUnit.pm blib/lib/Bio/MAGE/Measurement/MassUnit.pm
cp MAGE/Extendable.pm blib/lib/Bio/MAGE/Extendable.pm
cp MAGE/HigherLevelAnalysis/NodeContents.pm blib/lib/Bio/MAGE/HigherLevelAnalysis/NodeContents.pm
cp MAGE/DesignElement/ReporterPosition.pm blib/lib/Bio/MAGE/DesignElement/ReporterPosition.pm
cp MAGE/Experiment/ExperimentalFactor.pm blib/lib/Bio/MAGE/Experiment/ExperimentalFactor.pm
cp MAGE/DesignElement/ReporterCompositeMap.pm blib/lib/Bio/MAGE/DesignElement/ReporterCompositeMap.pm
cp MAGE/DesignElement/MismatchInformation.pm blib/lib/Bio/MAGE/DesignElement/MismatchInformation.pm
cp MAGE/Experiment/ExperimentDesign.pm blib/lib/Bio/MAGE/Experiment/ExperimentDesign.pm
cp MAGE/Experiment.pm blib/lib/Bio/MAGE/Experiment.pm
cp MAGE/HigherLevelAnalysis/Node.pm blib/lib/Bio/MAGE/HigherLevelAnalysis/Node.pm
cp MAGE/Protocol/SoftwareApplication.pm blib/lib/Bio/MAGE/Protocol/SoftwareApplication.pm
cp MAGE/QuantitationType/MeasuredSignal.pm blib/lib/Bio/MAGE/QuantitationType/MeasuredSignal.pm
cp MAGE/QuantitationType/StandardQuantitationType.pm blib/lib/Bio/MAGE/QuantitationType/StandardQuantitationType.pm
cp MAGE/QuantitationType/QuantitationType.pm blib/lib/Bio/MAGE/QuantitationType/QuantitationType.pm
cp MAGE/Protocol/Parameter.pm blib/lib/Bio/MAGE/Protocol/Parameter.pm
cp MAGE/Measurement/Unit.pm blib/lib/Bio/MAGE/Measurement/Unit.pm
cp MAGE/QuantitationType/PresentAbsent.pm blib/lib/Bio/MAGE/QuantitationType/PresentAbsent.pm
cp MAGE/QuantitationType/ExpectedValue.pm blib/lib/Bio/MAGE/QuantitationType/ExpectedValue.pm
cp MAGE/QuantitationType/SpecializedQuantitationType.pm blib/lib/Bio/MAGE/QuantitationType/SpecializedQuantitationType.pm
cp MAGE/Protocol/Software.pm blib/lib/Bio/MAGE/Protocol/Software.pm
cp MAGE/Protocol/ParameterizableApplication.pm blib/lib/Bio/MAGE/Protocol/ParameterizableApplication.pm
cp MAGE/QuantitationType/ConfidenceIndicator.pm blib/lib/Bio/MAGE/QuantitationType/ConfidenceIndicator.pm
cp MAGE/QuantitationType/PValue.pm blib/lib/Bio/MAGE/QuantitationType/PValue.pm
cp MAGE/QuantitationType/Failed.pm blib/lib/Bio/MAGE/QuantitationType/Failed.pm
cp MAGE/Protocol/HardwareApplication.pm blib/lib/Bio/MAGE/Protocol/HardwareApplication.pm
cp classes.pm blib/lib/Bio/classes.pm
cp MAGE/Protocol.pm blib/lib/Bio/MAGE/Protocol.pm
cp MAGE/Protocol/Parameterizable.pm blib/lib/Bio/MAGE/Protocol/Parameterizable.pm
cp MAGE/QuantitationType/Ratio.pm blib/lib/Bio/MAGE/QuantitationType/Ratio.pm
cp MAGE/Measurement/VolumeUnit.pm blib/lib/Bio/MAGE/Measurement/VolumeUnit.pm
cp MAGE/Measurement/TemperatureUnit.pm blib/lib/Bio/MAGE/Measurement/TemperatureUnit.pm
cp MAGE/Protocol/ParameterValue.pm blib/lib/Bio/MAGE/Protocol/ParameterValue.pm
cp MAGE/Protocol/Protocol.pm blib/lib/Bio/MAGE/Protocol/Protocol.pm
cp MAGE/Measurement/TimeUnit.pm blib/lib/Bio/MAGE/Measurement/TimeUnit.pm
cp MAGE/Protocol/ProtocolApplication.pm blib/lib/Bio/MAGE/Protocol/ProtocolApplication.pm
cp MAGE/QuantitationType/Error.pm blib/lib/Bio/MAGE/QuantitationType/Error.pm
cp MAGE/QuantitationType/DerivedSignal.pm blib/lib/Bio/MAGE/QuantitationType/DerivedSignal.pm
cp MAGE/NameValueType.pm blib/lib/Bio/MAGE/NameValueType.pm
cp MAGE/Protocol/Hardware.pm blib/lib/Bio/MAGE/Protocol/Hardware.pm
cp MAGE/QuantitationType.pm blib/lib/Bio/MAGE/QuantitationType.pm
Manifying 29 pod documents
Manifying 28 pod documents
Manifying 27 pod documents
Manifying 27 pod documents
Manifying 28 pod documents
Manifying 12 pod documents
make[1]: Leaving directory '/build/libbio-mage-perl-20030502.3'
dh_auto_test
make -j16 test TEST_VERBOSE=1
make[1]: Entering directory '/build/libbio-mage-perl-20030502.3'
PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t
t/Array.t ........................
1..170
ok 1 - use Bio::MAGE::Array::Array;
ok 2 - An object of class 'Bio::MAGE::Array::Array' isa 'Bio::MAGE::Array::Array'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - arrayXOrigin new
ok 12 - arrayXOrigin getter/setter
ok 13 - arrayXOrigin getter throws exception with argument
ok 14 - arrayXOrigin setter throws exception with no argument
ok 15 - arrayXOrigin setter throws exception with too many argument
ok 16 - arrayXOrigin setter accepts undef
ok 17 - arrayYOrigin new
ok 18 - arrayYOrigin getter/setter
ok 19 - arrayYOrigin getter throws exception with argument
ok 20 - arrayYOrigin setter throws exception with no argument
ok 21 - arrayYOrigin setter throws exception with too many argument
ok 22 - arrayYOrigin setter accepts undef
ok 23 - name new
ok 24 - name getter/setter
ok 25 - name getter throws exception with argument
ok 26 - name setter throws exception with no argument
ok 27 - name setter throws exception with too many argument
ok 28 - name setter accepts undef
ok 29 - arrayIdentifier new
ok 30 - arrayIdentifier getter/setter
ok 31 - arrayIdentifier getter throws exception with argument
ok 32 - arrayIdentifier setter throws exception with no argument
ok 33 - arrayIdentifier setter throws exception with too many argument
ok 34 - arrayIdentifier setter accepts undef
ok 35 - originRelativeTo new
ok 36 - originRelativeTo getter/setter
ok 37 - originRelativeTo getter throws exception with argument
ok 38 - originRelativeTo setter throws exception with no argument
ok 39 - originRelativeTo setter throws exception with too many argument
ok 40 - originRelativeTo setter accepts undef
ok 41 - An object of class 'Bio::MAGE::Array::ArrayGroup' isa 'Bio::MAGE::Array::ArrayGroup'
ok 42 - setArrayGroup returns value
ok 43 - getArrayGroup fetches correct value
ok 44 - setArrayGroup throws exception with bad argument
ok 45 - getArrayGroup throws exception with argument
ok 46 - setArrayGroup throws exception with no argument
ok 47 - setArrayGroup throws exception with too many argument
ok 48 - setArrayGroup accepts undef
ok 49 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 50 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 51 - arrayGroup->other() is a valid Bio::MAGE::Association::End
ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 53 - arrayGroup->self() is a valid Bio::MAGE::Association::End
ok 54 - An object of class 'Bio::MAGE::ArrayDesign::ArrayDesign' isa 'Bio::MAGE::ArrayDesign::ArrayDesign'
ok 55 - setArrayDesign returns value
ok 56 - getArrayDesign fetches correct value
ok 57 - setArrayDesign throws exception with bad argument
ok 58 - getArrayDesign throws exception with argument
ok 59 - setArrayDesign throws exception with no argument
ok 60 - setArrayDesign throws exception with too many argument
ok 61 - setArrayDesign accepts undef
ok 62 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 63 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 64 - arrayDesign->other() is a valid Bio::MAGE::Association::End
ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 66 - arrayDesign->self() is a valid Bio::MAGE::Association::End
ok 67 - An object of class 'Bio::MAGE::Array::ArrayManufacture' isa 'Bio::MAGE::Array::ArrayManufacture'
ok 68 - setInformation returns value
ok 69 - getInformation fetches correct value
ok 70 - setInformation throws exception with bad argument
ok 71 - getInformation throws exception with argument
ok 72 - setInformation throws exception with no argument
ok 73 - setInformation throws exception with too many argument
ok 74 - setInformation accepts undef
ok 75 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 76 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 77 - information->other() is a valid Bio::MAGE::Association::End
ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 79 - information->self() is a valid Bio::MAGE::Association::End
ok 80 - auditTrail set in new()
ok 81 - setAuditTrail returns correct value
ok 82 - getAuditTrail fetches correct value
ok 83 - addAuditTrail returns number of items in list
ok 84 - addAuditTrail adds correct value
ok 85 - setAuditTrail throws exception with non-array argument
ok 86 - setAuditTrail throws exception with bad argument array
ok 87 - addAuditTrail throws exception with no arguments
ok 88 - addAuditTrail throws exception with bad array
ok 89 - setAuditTrail accepts empty array ref
ok 90 - getAuditTrail throws exception with argument
ok 91 - setAuditTrail throws exception with no argument
ok 92 - setAuditTrail throws exception with too many argument
ok 93 - setAuditTrail accepts undef
ok 94 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 95 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 96 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 98 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 99 - propertySets set in new()
ok 100 - setPropertySets returns correct value
ok 101 - getPropertySets fetches correct value
ok 102 - addPropertySets returns number of items in list
ok 103 - addPropertySets adds correct value
ok 104 - setPropertySets throws exception with non-array argument
ok 105 - setPropertySets throws exception with bad argument array
ok 106 - addPropertySets throws exception with no arguments
ok 107 - addPropertySets throws exception with bad array
ok 108 - setPropertySets accepts empty array ref
ok 109 - getPropertySets throws exception with argument
ok 110 - setPropertySets throws exception with no argument
ok 111 - setPropertySets throws exception with too many argument
ok 112 - setPropertySets accepts undef
ok 113 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 114 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 115 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 117 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 118 - descriptions set in new()
ok 119 - setDescriptions returns correct value
ok 120 - getDescriptions fetches correct value
ok 121 - addDescriptions returns number of items in list
ok 122 - addDescriptions adds correct value
ok 123 - setDescriptions throws exception with non-array argument
ok 124 - setDescriptions throws exception with bad argument array
ok 125 - addDescriptions throws exception with no arguments
ok 126 - addDescriptions throws exception with bad array
ok 127 - setDescriptions accepts empty array ref
ok 128 - getDescriptions throws exception with argument
ok 129 - setDescriptions throws exception with no argument
ok 130 - setDescriptions throws exception with too many argument
ok 131 - setDescriptions accepts undef
ok 132 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 133 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 134 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 135 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 136 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 137 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 138 - setSecurity returns value
ok 139 - getSecurity fetches correct value
ok 140 - setSecurity throws exception with bad argument
ok 141 - getSecurity throws exception with argument
ok 142 - setSecurity throws exception with no argument
ok 143 - setSecurity throws exception with too many argument
ok 144 - setSecurity accepts undef
ok 145 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 146 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 147 - security->other() is a valid Bio::MAGE::Association::End
ok 148 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 149 - security->self() is a valid Bio::MAGE::Association::End
ok 150 - arrayManufactureDeviations set in new()
ok 151 - setArrayManufactureDeviations returns correct value
ok 152 - getArrayManufactureDeviations fetches correct value
ok 153 - addArrayManufactureDeviations returns number of items in list
ok 154 - addArrayManufactureDeviations adds correct value
ok 155 - setArrayManufactureDeviations throws exception with non-array argument
ok 156 - setArrayManufactureDeviations throws exception with bad argument array
ok 157 - addArrayManufactureDeviations throws exception with no arguments
ok 158 - addArrayManufactureDeviations throws exception with bad array
ok 159 - setArrayManufactureDeviations accepts empty array ref
ok 160 - getArrayManufactureDeviations throws exception with argument
ok 161 - setArrayManufactureDeviations throws exception with no argument
ok 162 - setArrayManufactureDeviations throws exception with too many argument
ok 163 - setArrayManufactureDeviations accepts undef
ok 164 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 165 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 166 - arrayManufactureDeviations->other() is a valid Bio::MAGE::Association::End
ok 167 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 168 - arrayManufactureDeviations->self() is a valid Bio::MAGE::Association::End
ok 169 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 170 - An object of class 'Bio::MAGE::Array::Array' isa 'Bio::MAGE::Identifiable'
ok
t/Array_package.t ................
1..33
ok 1 - use Bio::MAGE::Array;
ok 2 - number of subclasses
ok 3 - An object of class 'Bio::MAGE::Array::Array' isa 'Bio::MAGE::Array::Array'
ok 4 - An object of class 'Bio::MAGE::Array::FeatureDefect' isa 'Bio::MAGE::Array::FeatureDefect'
ok 5 - An object of class 'Bio::MAGE::Array::ArrayGroup' isa 'Bio::MAGE::Array::ArrayGroup'
ok 6 - An object of class 'Bio::MAGE::Array::ArrayManufacture' isa 'Bio::MAGE::Array::ArrayManufacture'
ok 7 - An object of class 'Bio::MAGE::Array::ArrayManufactureDeviation' isa 'Bio::MAGE::Array::ArrayManufactureDeviation'
ok 8 - An object of class 'Bio::MAGE::Array::Fiducial' isa 'Bio::MAGE::Array::Fiducial'
ok 9 - An object of class 'Bio::MAGE::Array::ManufactureLIMS' isa 'Bio::MAGE::Array::ManufactureLIMS'
ok 10 - An object of class 'Bio::MAGE::Array::ManufactureLIMSBiomaterial' isa 'Bio::MAGE::Array::ManufactureLIMSBiomaterial'
ok 11 - An object of class 'Bio::MAGE::Array::PositionDelta' isa 'Bio::MAGE::Array::PositionDelta'
ok 12 - An object of class 'Bio::MAGE::Array::ZoneDefect' isa 'Bio::MAGE::Array::ZoneDefect'
ok 13 - An object of class 'Bio::MAGE::Array' isa 'Bio::MAGE::Array'
ok 14 - tagname
ok 15 - xml_lists
ok 16 - A reference of type 'ARRAY' isa 'ARRAY'
ok 17 - arraygroup_list empty
ok 18 - A reference of type 'ARRAY' isa 'ARRAY'
ok 19 - getArrayGroup_list empty
ok 20 - A reference of type 'ARRAY' isa 'ARRAY'
ok 21 - getArrayGroup_list not empty
ok 22 - A reference of type 'ARRAY' isa 'ARRAY'
ok 23 - array_list empty
ok 24 - A reference of type 'ARRAY' isa 'ARRAY'
ok 25 - getArray_list empty
ok 26 - A reference of type 'ARRAY' isa 'ARRAY'
ok 27 - getArray_list not empty
ok 28 - A reference of type 'ARRAY' isa 'ARRAY'
ok 29 - arraymanufacture_list empty
ok 30 - A reference of type 'ARRAY' isa 'ARRAY'
ok 31 - getArrayManufacture_list empty
ok 32 - A reference of type 'ARRAY' isa 'ARRAY'
ok 33 - getArrayManufacture_list not empty
ok
t/ArrayDesign.t ..................
1..197
ok 1 - use Bio::MAGE::ArrayDesign::ArrayDesign;
ok 2 - An object of class 'Bio::MAGE::ArrayDesign::ArrayDesign' isa 'Bio::MAGE::ArrayDesign::ArrayDesign'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - numberOfFeatures new
ok 12 - numberOfFeatures getter/setter
ok 13 - numberOfFeatures getter throws exception with argument
ok 14 - numberOfFeatures setter throws exception with no argument
ok 15 - numberOfFeatures setter throws exception with too many argument
ok 16 - numberOfFeatures setter accepts undef
ok 17 - version new
ok 18 - version getter/setter
ok 19 - version getter throws exception with argument
ok 20 - version setter throws exception with no argument
ok 21 - version setter throws exception with too many argument
ok 22 - version setter accepts undef
ok 23 - name new
ok 24 - name getter/setter
ok 25 - name getter throws exception with argument
ok 26 - name setter throws exception with no argument
ok 27 - name setter throws exception with too many argument
ok 28 - name setter accepts undef
ok 29 - protocolApplications set in new()
ok 30 - setProtocolApplications returns correct value
ok 31 - getProtocolApplications fetches correct value
ok 32 - addProtocolApplications returns number of items in list
ok 33 - addProtocolApplications adds correct value
ok 34 - setProtocolApplications throws exception with non-array argument
ok 35 - setProtocolApplications throws exception with bad argument array
ok 36 - addProtocolApplications throws exception with no arguments
ok 37 - addProtocolApplications throws exception with bad array
ok 38 - setProtocolApplications accepts empty array ref
ok 39 - getProtocolApplications throws exception with argument
ok 40 - setProtocolApplications throws exception with no argument
ok 41 - setProtocolApplications throws exception with too many argument
ok 42 - setProtocolApplications accepts undef
ok 43 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 45 - protocolApplications->other() is a valid Bio::MAGE::Association::End
ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 47 - protocolApplications->self() is a valid Bio::MAGE::Association::End
ok 48 - reporterGroups set in new()
ok 49 - setReporterGroups returns correct value
ok 50 - getReporterGroups fetches correct value
ok 51 - addReporterGroups returns number of items in list
ok 52 - addReporterGroups adds correct value
ok 53 - setReporterGroups throws exception with non-array argument
ok 54 - setReporterGroups throws exception with bad argument array
ok 55 - addReporterGroups throws exception with no arguments
ok 56 - addReporterGroups throws exception with bad array
ok 57 - setReporterGroups accepts empty array ref
ok 58 - getReporterGroups throws exception with argument
ok 59 - setReporterGroups throws exception with no argument
ok 60 - setReporterGroups throws exception with too many argument
ok 61 - setReporterGroups accepts undef
ok 62 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 63 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 64 - reporterGroups->other() is a valid Bio::MAGE::Association::End
ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 66 - reporterGroups->self() is a valid Bio::MAGE::Association::End
ok 67 - featureGroups set in new()
ok 68 - setFeatureGroups returns correct value
ok 69 - getFeatureGroups fetches correct value
ok 70 - addFeatureGroups returns number of items in list
ok 71 - addFeatureGroups adds correct value
ok 72 - setFeatureGroups throws exception with non-array argument
ok 73 - setFeatureGroups throws exception with bad argument array
ok 74 - addFeatureGroups throws exception with no arguments
ok 75 - addFeatureGroups throws exception with bad array
ok 76 - setFeatureGroups accepts empty array ref
ok 77 - getFeatureGroups throws exception with argument
ok 78 - setFeatureGroups throws exception with no argument
ok 79 - setFeatureGroups throws exception with too many argument
ok 80 - setFeatureGroups accepts undef
ok 81 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 82 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 83 - featureGroups->other() is a valid Bio::MAGE::Association::End
ok 84 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 85 - featureGroups->self() is a valid Bio::MAGE::Association::End
ok 86 - descriptions set in new()
ok 87 - setDescriptions returns correct value
ok 88 - getDescriptions fetches correct value
ok 89 - addDescriptions returns number of items in list
ok 90 - addDescriptions adds correct value
ok 91 - setDescriptions throws exception with non-array argument
ok 92 - setDescriptions throws exception with bad argument array
ok 93 - addDescriptions throws exception with no arguments
ok 94 - addDescriptions throws exception with bad array
ok 95 - setDescriptions accepts empty array ref
ok 96 - getDescriptions throws exception with argument
ok 97 - setDescriptions throws exception with no argument
ok 98 - setDescriptions throws exception with too many argument
ok 99 - setDescriptions accepts undef
ok 100 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 101 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 102 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 103 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 104 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 105 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 106 - setSecurity returns value
ok 107 - getSecurity fetches correct value
ok 108 - setSecurity throws exception with bad argument
ok 109 - getSecurity throws exception with argument
ok 110 - setSecurity throws exception with no argument
ok 111 - setSecurity throws exception with too many argument
ok 112 - setSecurity accepts undef
ok 113 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 114 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 115 - security->other() is a valid Bio::MAGE::Association::End
ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 117 - security->self() is a valid Bio::MAGE::Association::End
ok 118 - auditTrail set in new()
ok 119 - setAuditTrail returns correct value
ok 120 - getAuditTrail fetches correct value
ok 121 - addAuditTrail returns number of items in list
ok 122 - addAuditTrail adds correct value
ok 123 - setAuditTrail throws exception with non-array argument
ok 124 - setAuditTrail throws exception with bad argument array
ok 125 - addAuditTrail throws exception with no arguments
ok 126 - addAuditTrail throws exception with bad array
ok 127 - setAuditTrail accepts empty array ref
ok 128 - getAuditTrail throws exception with argument
ok 129 - setAuditTrail throws exception with no argument
ok 130 - setAuditTrail throws exception with too many argument
ok 131 - setAuditTrail accepts undef
ok 132 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 133 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 134 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 135 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 136 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 137 - propertySets set in new()
ok 138 - setPropertySets returns correct value
ok 139 - getPropertySets fetches correct value
ok 140 - addPropertySets returns number of items in list
ok 141 - addPropertySets adds correct value
ok 142 - setPropertySets throws exception with non-array argument
ok 143 - setPropertySets throws exception with bad argument array
ok 144 - addPropertySets throws exception with no arguments
ok 145 - addPropertySets throws exception with bad array
ok 146 - setPropertySets accepts empty array ref
ok 147 - getPropertySets throws exception with argument
ok 148 - setPropertySets throws exception with no argument
ok 149 - setPropertySets throws exception with too many argument
ok 150 - setPropertySets accepts undef
ok 151 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 152 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 153 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 155 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 156 - compositeGroups set in new()
ok 157 - setCompositeGroups returns correct value
ok 158 - getCompositeGroups fetches correct value
ok 159 - addCompositeGroups returns number of items in list
ok 160 - addCompositeGroups adds correct value
ok 161 - setCompositeGroups throws exception with non-array argument
ok 162 - setCompositeGroups throws exception with bad argument array
ok 163 - addCompositeGroups throws exception with no arguments
ok 164 - addCompositeGroups throws exception with bad array
ok 165 - setCompositeGroups accepts empty array ref
ok 166 - getCompositeGroups throws exception with argument
ok 167 - setCompositeGroups throws exception with no argument
ok 168 - setCompositeGroups throws exception with too many argument
ok 169 - setCompositeGroups accepts undef
ok 170 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 171 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 172 - compositeGroups->other() is a valid Bio::MAGE::Association::End
ok 173 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 174 - compositeGroups->self() is a valid Bio::MAGE::Association::End
ok 175 - designProviders set in new()
ok 176 - setDesignProviders returns correct value
ok 177 - getDesignProviders fetches correct value
ok 178 - addDesignProviders returns number of items in list
ok 179 - addDesignProviders adds correct value
ok 180 - setDesignProviders throws exception with non-array argument
ok 181 - setDesignProviders throws exception with bad argument array
ok 182 - addDesignProviders throws exception with no arguments
ok 183 - addDesignProviders throws exception with bad array
ok 184 - setDesignProviders accepts empty array ref
ok 185 - getDesignProviders throws exception with argument
ok 186 - setDesignProviders throws exception with no argument
ok 187 - setDesignProviders throws exception with too many argument
ok 188 - setDesignProviders accepts undef
ok 189 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 190 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 191 - designProviders->other() is a valid Bio::MAGE::Association::End
ok 192 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 193 - designProviders->self() is a valid Bio::MAGE::Association::End
ok 194 - An object of class 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign' isa 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign'
ok 195 - An object of class 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign' isa 'Bio::MAGE::ArrayDesign::ArrayDesign'
ok 196 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 197 - An object of class 'Bio::MAGE::ArrayDesign::ArrayDesign' isa 'Bio::MAGE::Identifiable'
ok
t/ArrayDesign_package.t ..........
1..32
ok 1 - use Bio::MAGE::ArrayDesign;
ok 2 - number of subclasses
ok 3 - An object of class 'Bio::MAGE::ArrayDesign::ArrayDesign' isa 'Bio::MAGE::ArrayDesign::ArrayDesign'
ok 4 - An object of class 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign' isa 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign'
ok 5 - An object of class 'Bio::MAGE::ArrayDesign::ZoneLayout' isa 'Bio::MAGE::ArrayDesign::ZoneLayout'
ok 6 - An object of class 'Bio::MAGE::ArrayDesign::ZoneGroup' isa 'Bio::MAGE::ArrayDesign::ZoneGroup'
ok 7 - An object of class 'Bio::MAGE::ArrayDesign::Zone' isa 'Bio::MAGE::ArrayDesign::Zone'
ok 8 - An object of class 'Bio::MAGE::ArrayDesign::ReporterGroup' isa 'Bio::MAGE::ArrayDesign::ReporterGroup'
ok 9 - An object of class 'Bio::MAGE::ArrayDesign::FeatureGroup' isa 'Bio::MAGE::ArrayDesign::FeatureGroup'
ok 10 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup'
ok 11 - An object of class 'Bio::MAGE::ArrayDesign::CompositeGroup' isa 'Bio::MAGE::ArrayDesign::CompositeGroup'
ok 12 - An object of class 'Bio::MAGE::ArrayDesign' isa 'Bio::MAGE::ArrayDesign'
ok 13 - tagname
ok 14 - xml_lists
ok 15 - A reference of type 'ARRAY' isa 'ARRAY'
ok 16 - reportergroup_list empty
ok 17 - A reference of type 'ARRAY' isa 'ARRAY'
ok 18 - getReporterGroup_list empty
ok 19 - A reference of type 'ARRAY' isa 'ARRAY'
ok 20 - getReporterGroup_list not empty
ok 21 - A reference of type 'ARRAY' isa 'ARRAY'
ok 22 - compositegroup_list empty
ok 23 - A reference of type 'ARRAY' isa 'ARRAY'
ok 24 - getCompositeGroup_list empty
ok 25 - A reference of type 'ARRAY' isa 'ARRAY'
ok 26 - getCompositeGroup_list not empty
ok 27 - A reference of type 'ARRAY' isa 'ARRAY'
ok 28 - arraydesign_list empty
ok 29 - A reference of type 'ARRAY' isa 'ARRAY'
ok 30 - getArrayDesign_list empty
ok 31 - A reference of type 'ARRAY' isa 'ARRAY'
ok 32 - getArrayDesign_list not empty
ok
t/ArrayGroup.t ...................
1..205
ok 1 - use Bio::MAGE::Array::ArrayGroup;
ok 2 - An object of class 'Bio::MAGE::Array::ArrayGroup' isa 'Bio::MAGE::Array::ArrayGroup'
ok 3 - package
ok 4 - class_name
ok 5 - arraySpacingY new
ok 6 - arraySpacingY getter/setter
ok 7 - arraySpacingY getter throws exception with argument
ok 8 - arraySpacingY setter throws exception with no argument
ok 9 - arraySpacingY setter throws exception with too many argument
ok 10 - arraySpacingY setter accepts undef
ok 11 - numArrays new
ok 12 - numArrays getter/setter
ok 13 - numArrays getter throws exception with argument
ok 14 - numArrays setter throws exception with no argument
ok 15 - numArrays setter throws exception with too many argument
ok 16 - numArrays setter accepts undef
ok 17 - width new
ok 18 - width getter/setter
ok 19 - width getter throws exception with argument
ok 20 - width setter throws exception with no argument
ok 21 - width setter throws exception with too many argument
ok 22 - width setter accepts undef
ok 23 - orientationMarkPosition new
ok 24 - orientationMarkPosition getter/setter
ok 25 - orientationMarkPosition getter throws exception with argument
ok 26 - orientationMarkPosition setter throws exception with no argument
ok 27 - orientationMarkPosition setter throws exception with too many argument
ok 28 - orientationMarkPosition setter accepts undef
ok 29 - orientationMarkPosition setter throws exception with bad argument
ok 30 - orientationMarkPosition accepts top
ok 31 - orientationMarkPosition accepts bottom
ok 32 - orientationMarkPosition accepts left
ok 33 - orientationMarkPosition accepts right
ok 34 - arraySpacingX new
ok 35 - arraySpacingX getter/setter
ok 36 - arraySpacingX getter throws exception with argument
ok 37 - arraySpacingX setter throws exception with no argument
ok 38 - arraySpacingX setter throws exception with too many argument
ok 39 - arraySpacingX setter accepts undef
ok 40 - name new
ok 41 - name getter/setter
ok 42 - name getter throws exception with argument
ok 43 - name setter throws exception with no argument
ok 44 - name setter throws exception with too many argument
ok 45 - name setter accepts undef
ok 46 - barcode new
ok 47 - barcode getter/setter
ok 48 - barcode getter throws exception with argument
ok 49 - barcode setter throws exception with no argument
ok 50 - barcode setter throws exception with too many argument
ok 51 - barcode setter accepts undef
ok 52 - orientationMark new
ok 53 - orientationMark getter/setter
ok 54 - orientationMark getter throws exception with argument
ok 55 - orientationMark setter throws exception with no argument
ok 56 - orientationMark setter throws exception with too many argument
ok 57 - orientationMark setter accepts undef
ok 58 - identifier new
ok 59 - identifier getter/setter
ok 60 - identifier getter throws exception with argument
ok 61 - identifier setter throws exception with no argument
ok 62 - identifier setter throws exception with too many argument
ok 63 - identifier setter accepts undef
ok 64 - length new
ok 65 - length getter/setter
ok 66 - length getter throws exception with argument
ok 67 - length setter throws exception with no argument
ok 68 - length setter throws exception with too many argument
ok 69 - length setter accepts undef
ok 70 - arrays set in new()
ok 71 - setArrays returns correct value
ok 72 - getArrays fetches correct value
ok 73 - addArrays returns number of items in list
ok 74 - addArrays adds correct value
ok 75 - setArrays throws exception with non-array argument
ok 76 - setArrays throws exception with bad argument array
ok 77 - addArrays throws exception with no arguments
ok 78 - addArrays throws exception with bad array
ok 79 - setArrays accepts empty array ref
ok 80 - getArrays throws exception with argument
ok 81 - setArrays throws exception with no argument
ok 82 - setArrays throws exception with too many argument
ok 83 - setArrays accepts undef
ok 84 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - arrays->other() is a valid Bio::MAGE::Association::End
ok 87 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 88 - arrays->self() is a valid Bio::MAGE::Association::End
ok 89 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit'
ok 90 - setDistanceUnit returns value
ok 91 - getDistanceUnit fetches correct value
ok 92 - setDistanceUnit throws exception with bad argument
ok 93 - getDistanceUnit throws exception with argument
ok 94 - setDistanceUnit throws exception with no argument
ok 95 - setDistanceUnit throws exception with too many argument
ok 96 - setDistanceUnit accepts undef
ok 97 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 99 - distanceUnit->other() is a valid Bio::MAGE::Association::End
ok 100 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 101 - distanceUnit->self() is a valid Bio::MAGE::Association::End
ok 102 - descriptions set in new()
ok 103 - setDescriptions returns correct value
ok 104 - getDescriptions fetches correct value
ok 105 - addDescriptions returns number of items in list
ok 106 - addDescriptions adds correct value
ok 107 - setDescriptions throws exception with non-array argument
ok 108 - setDescriptions throws exception with bad argument array
ok 109 - addDescriptions throws exception with no arguments
ok 110 - addDescriptions throws exception with bad array
ok 111 - setDescriptions accepts empty array ref
ok 112 - getDescriptions throws exception with argument
ok 113 - setDescriptions throws exception with no argument
ok 114 - setDescriptions throws exception with too many argument
ok 115 - setDescriptions accepts undef
ok 116 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 118 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 119 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 120 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 121 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 122 - setSubstrateType returns value
ok 123 - getSubstrateType fetches correct value
ok 124 - setSubstrateType throws exception with bad argument
ok 125 - getSubstrateType throws exception with argument
ok 126 - setSubstrateType throws exception with no argument
ok 127 - setSubstrateType throws exception with too many argument
ok 128 - setSubstrateType accepts undef
ok 129 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 131 - substrateType->other() is a valid Bio::MAGE::Association::End
ok 132 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 133 - substrateType->self() is a valid Bio::MAGE::Association::End
ok 134 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 135 - setSecurity returns value
ok 136 - getSecurity fetches correct value
ok 137 - setSecurity throws exception with bad argument
ok 138 - getSecurity throws exception with argument
ok 139 - setSecurity throws exception with no argument
ok 140 - setSecurity throws exception with too many argument
ok 141 - setSecurity accepts undef
ok 142 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 143 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 144 - security->other() is a valid Bio::MAGE::Association::End
ok 145 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 146 - security->self() is a valid Bio::MAGE::Association::End
ok 147 - auditTrail set in new()
ok 148 - setAuditTrail returns correct value
ok 149 - getAuditTrail fetches correct value
ok 150 - addAuditTrail returns number of items in list
ok 151 - addAuditTrail adds correct value
ok 152 - setAuditTrail throws exception with non-array argument
ok 153 - setAuditTrail throws exception with bad argument array
ok 154 - addAuditTrail throws exception with no arguments
ok 155 - addAuditTrail throws exception with bad array
ok 156 - setAuditTrail accepts empty array ref
ok 157 - getAuditTrail throws exception with argument
ok 158 - setAuditTrail throws exception with no argument
ok 159 - setAuditTrail throws exception with too many argument
ok 160 - setAuditTrail accepts undef
ok 161 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 162 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 163 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 164 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 165 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 166 - propertySets set in new()
ok 167 - setPropertySets returns correct value
ok 168 - getPropertySets fetches correct value
ok 169 - addPropertySets returns number of items in list
ok 170 - addPropertySets adds correct value
ok 171 - setPropertySets throws exception with non-array argument
ok 172 - setPropertySets throws exception with bad argument array
ok 173 - addPropertySets throws exception with no arguments
ok 174 - addPropertySets throws exception with bad array
ok 175 - setPropertySets accepts empty array ref
ok 176 - getPropertySets throws exception with argument
ok 177 - setPropertySets throws exception with no argument
ok 178 - setPropertySets throws exception with too many argument
ok 179 - setPropertySets accepts undef
ok 180 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 181 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 182 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 183 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 184 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 185 - fiducials set in new()
ok 186 - setFiducials returns correct value
ok 187 - getFiducials fetches correct value
ok 188 - addFiducials returns number of items in list
ok 189 - addFiducials adds correct value
ok 190 - setFiducials throws exception with non-array argument
ok 191 - setFiducials throws exception with bad argument array
ok 192 - addFiducials throws exception with no arguments
ok 193 - addFiducials throws exception with bad array
ok 194 - setFiducials accepts empty array ref
ok 195 - getFiducials throws exception with argument
ok 196 - setFiducials throws exception with no argument
ok 197 - setFiducials throws exception with too many argument
ok 198 - setFiducials accepts undef
ok 199 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 200 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 201 - fiducials->other() is a valid Bio::MAGE::Association::End
ok 202 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 203 - fiducials->self() is a valid Bio::MAGE::Association::End
ok 204 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 205 - An object of class 'Bio::MAGE::Array::ArrayGroup' isa 'Bio::MAGE::Identifiable'
ok
t/ArrayManufacture.t .............
1..195
ok 1 - use Bio::MAGE::Array::ArrayManufacture;
ok 2 - An object of class 'Bio::MAGE::Array::ArrayManufacture' isa 'Bio::MAGE::Array::ArrayManufacture'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - tolerance new
ok 12 - tolerance getter/setter
ok 13 - tolerance getter throws exception with argument
ok 14 - tolerance setter throws exception with no argument
ok 15 - tolerance setter throws exception with too many argument
ok 16 - tolerance setter accepts undef
ok 17 - name new
ok 18 - name getter/setter
ok 19 - name getter throws exception with argument
ok 20 - name setter throws exception with no argument
ok 21 - name setter throws exception with too many argument
ok 22 - name setter accepts undef
ok 23 - manufacturingDate new
ok 24 - manufacturingDate getter/setter
ok 25 - manufacturingDate getter throws exception with argument
ok 26 - manufacturingDate setter throws exception with no argument
ok 27 - manufacturingDate setter throws exception with too many argument
ok 28 - manufacturingDate setter accepts undef
ok 29 - protocolApplications set in new()
ok 30 - setProtocolApplications returns correct value
ok 31 - getProtocolApplications fetches correct value
ok 32 - addProtocolApplications returns number of items in list
ok 33 - addProtocolApplications adds correct value
ok 34 - setProtocolApplications throws exception with non-array argument
ok 35 - setProtocolApplications throws exception with bad argument array
ok 36 - addProtocolApplications throws exception with no arguments
ok 37 - addProtocolApplications throws exception with bad array
ok 38 - setProtocolApplications accepts empty array ref
ok 39 - getProtocolApplications throws exception with argument
ok 40 - setProtocolApplications throws exception with no argument
ok 41 - setProtocolApplications throws exception with too many argument
ok 42 - setProtocolApplications accepts undef
ok 43 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 45 - protocolApplications->other() is a valid Bio::MAGE::Association::End
ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 47 - protocolApplications->self() is a valid Bio::MAGE::Association::End
ok 48 - arrayManufacturers set in new()
ok 49 - setArrayManufacturers returns correct value
ok 50 - getArrayManufacturers fetches correct value
ok 51 - addArrayManufacturers returns number of items in list
ok 52 - addArrayManufacturers adds correct value
ok 53 - setArrayManufacturers throws exception with non-array argument
ok 54 - setArrayManufacturers throws exception with bad argument array
ok 55 - addArrayManufacturers throws exception with no arguments
ok 56 - addArrayManufacturers throws exception with bad array
ok 57 - setArrayManufacturers accepts empty array ref
ok 58 - getArrayManufacturers throws exception with argument
ok 59 - setArrayManufacturers throws exception with no argument
ok 60 - setArrayManufacturers throws exception with too many argument
ok 61 - setArrayManufacturers accepts undef
ok 62 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 63 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 64 - arrayManufacturers->other() is a valid Bio::MAGE::Association::End
ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 66 - arrayManufacturers->self() is a valid Bio::MAGE::Association::End
ok 67 - featureLIMSs set in new()
ok 68 - setFeatureLIMSs returns correct value
ok 69 - getFeatureLIMSs fetches correct value
ok 70 - addFeatureLIMSs returns number of items in list
ok 71 - addFeatureLIMSs adds correct value
ok 72 - setFeatureLIMSs throws exception with non-array argument
ok 73 - setFeatureLIMSs throws exception with bad argument array
ok 74 - addFeatureLIMSs throws exception with no arguments
ok 75 - addFeatureLIMSs throws exception with bad array
ok 76 - setFeatureLIMSs accepts empty array ref
ok 77 - getFeatureLIMSs throws exception with argument
ok 78 - setFeatureLIMSs throws exception with no argument
ok 79 - setFeatureLIMSs throws exception with too many argument
ok 80 - setFeatureLIMSs accepts undef
ok 81 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 82 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 83 - featureLIMSs->other() is a valid Bio::MAGE::Association::End
ok 84 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 85 - featureLIMSs->self() is a valid Bio::MAGE::Association::End
ok 86 - arrays set in new()
ok 87 - setArrays returns correct value
ok 88 - getArrays fetches correct value
ok 89 - addArrays returns number of items in list
ok 90 - addArrays adds correct value
ok 91 - setArrays throws exception with non-array argument
ok 92 - setArrays throws exception with bad argument array
ok 93 - addArrays throws exception with no arguments
ok 94 - addArrays throws exception with bad array
ok 95 - setArrays accepts empty array ref
ok 96 - getArrays throws exception with argument
ok 97 - setArrays throws exception with no argument
ok 98 - setArrays throws exception with too many argument
ok 99 - setArrays accepts undef
ok 100 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 101 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 102 - arrays->other() is a valid Bio::MAGE::Association::End
ok 103 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 104 - arrays->self() is a valid Bio::MAGE::Association::End
ok 105 - descriptions set in new()
ok 106 - setDescriptions returns correct value
ok 107 - getDescriptions fetches correct value
ok 108 - addDescriptions returns number of items in list
ok 109 - addDescriptions adds correct value
ok 110 - setDescriptions throws exception with non-array argument
ok 111 - setDescriptions throws exception with bad argument array
ok 112 - addDescriptions throws exception with no arguments
ok 113 - addDescriptions throws exception with bad array
ok 114 - setDescriptions accepts empty array ref
ok 115 - getDescriptions throws exception with argument
ok 116 - setDescriptions throws exception with no argument
ok 117 - setDescriptions throws exception with too many argument
ok 118 - setDescriptions accepts undef
ok 119 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 120 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 121 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 122 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 123 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 124 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 125 - setSecurity returns value
ok 126 - getSecurity fetches correct value
ok 127 - setSecurity throws exception with bad argument
ok 128 - getSecurity throws exception with argument
ok 129 - setSecurity throws exception with no argument
ok 130 - setSecurity throws exception with too many argument
ok 131 - setSecurity accepts undef
ok 132 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 133 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 134 - security->other() is a valid Bio::MAGE::Association::End
ok 135 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 136 - security->self() is a valid Bio::MAGE::Association::End
ok 137 - auditTrail set in new()
ok 138 - setAuditTrail returns correct value
ok 139 - getAuditTrail fetches correct value
ok 140 - addAuditTrail returns number of items in list
ok 141 - addAuditTrail adds correct value
ok 142 - setAuditTrail throws exception with non-array argument
ok 143 - setAuditTrail throws exception with bad argument array
ok 144 - addAuditTrail throws exception with no arguments
ok 145 - addAuditTrail throws exception with bad array
ok 146 - setAuditTrail accepts empty array ref
ok 147 - getAuditTrail throws exception with argument
ok 148 - setAuditTrail throws exception with no argument
ok 149 - setAuditTrail throws exception with too many argument
ok 150 - setAuditTrail accepts undef
ok 151 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 152 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 153 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 155 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 156 - propertySets set in new()
ok 157 - setPropertySets returns correct value
ok 158 - getPropertySets fetches correct value
ok 159 - addPropertySets returns number of items in list
ok 160 - addPropertySets adds correct value
ok 161 - setPropertySets throws exception with non-array argument
ok 162 - setPropertySets throws exception with bad argument array
ok 163 - addPropertySets throws exception with no arguments
ok 164 - addPropertySets throws exception with bad array
ok 165 - setPropertySets accepts empty array ref
ok 166 - getPropertySets throws exception with argument
ok 167 - setPropertySets throws exception with no argument
ok 168 - setPropertySets throws exception with too many argument
ok 169 - setPropertySets accepts undef
ok 170 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 171 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 172 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 173 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 174 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 175 - qualityControlStatistics set in new()
ok 176 - setQualityControlStatistics returns correct value
ok 177 - getQualityControlStatistics fetches correct value
ok 178 - addQualityControlStatistics returns number of items in list
ok 179 - addQualityControlStatistics adds correct value
ok 180 - setQualityControlStatistics throws exception with non-array argument
ok 181 - setQualityControlStatistics throws exception with bad argument array
ok 182 - addQualityControlStatistics throws exception with no arguments
ok 183 - addQualityControlStatistics throws exception with bad array
ok 184 - setQualityControlStatistics accepts empty array ref
ok 185 - getQualityControlStatistics throws exception with argument
ok 186 - setQualityControlStatistics throws exception with no argument
ok 187 - setQualityControlStatistics throws exception with too many argument
ok 188 - setQualityControlStatistics accepts undef
ok 189 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 190 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 191 - qualityControlStatistics->other() is a valid Bio::MAGE::Association::End
ok 192 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 193 - qualityControlStatistics->self() is a valid Bio::MAGE::Association::End
ok 194 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 195 - An object of class 'Bio::MAGE::Array::ArrayManufacture' isa 'Bio::MAGE::Identifiable'
ok
t/ArrayManufactureDeviation.t ....
1..63
ok 1 - use Bio::MAGE::Array::ArrayManufactureDeviation;
ok 2 - An object of class 'Bio::MAGE::Array::ArrayManufactureDeviation' isa 'Bio::MAGE::Array::ArrayManufactureDeviation'
ok 3 - package
ok 4 - class_name
ok 5 - adjustments set in new()
ok 6 - setAdjustments returns correct value
ok 7 - getAdjustments fetches correct value
ok 8 - addAdjustments returns number of items in list
ok 9 - addAdjustments adds correct value
ok 10 - setAdjustments throws exception with non-array argument
ok 11 - setAdjustments throws exception with bad argument array
ok 12 - addAdjustments throws exception with no arguments
ok 13 - addAdjustments throws exception with bad array
ok 14 - setAdjustments accepts empty array ref
ok 15 - getAdjustments throws exception with argument
ok 16 - setAdjustments throws exception with no argument
ok 17 - setAdjustments throws exception with too many argument
ok 18 - setAdjustments accepts undef
ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 21 - adjustments->other() is a valid Bio::MAGE::Association::End
ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 23 - adjustments->self() is a valid Bio::MAGE::Association::End
ok 24 - propertySets set in new()
ok 25 - setPropertySets returns correct value
ok 26 - getPropertySets fetches correct value
ok 27 - addPropertySets returns number of items in list
ok 28 - addPropertySets adds correct value
ok 29 - setPropertySets throws exception with non-array argument
ok 30 - setPropertySets throws exception with bad argument array
ok 31 - addPropertySets throws exception with no arguments
ok 32 - addPropertySets throws exception with bad array
ok 33 - setPropertySets accepts empty array ref
ok 34 - getPropertySets throws exception with argument
ok 35 - setPropertySets throws exception with no argument
ok 36 - setPropertySets throws exception with too many argument
ok 37 - setPropertySets accepts undef
ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 40 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 42 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 43 - featureDefects set in new()
ok 44 - setFeatureDefects returns correct value
ok 45 - getFeatureDefects fetches correct value
ok 46 - addFeatureDefects returns number of items in list
ok 47 - addFeatureDefects adds correct value
ok 48 - setFeatureDefects throws exception with non-array argument
ok 49 - setFeatureDefects throws exception with bad argument array
ok 50 - addFeatureDefects throws exception with no arguments
ok 51 - addFeatureDefects throws exception with bad array
ok 52 - setFeatureDefects accepts empty array ref
ok 53 - getFeatureDefects throws exception with argument
ok 54 - setFeatureDefects throws exception with no argument
ok 55 - setFeatureDefects throws exception with too many argument
ok 56 - setFeatureDefects accepts undef
ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 59 - featureDefects->other() is a valid Bio::MAGE::Association::End
ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 61 - featureDefects->self() is a valid Bio::MAGE::Association::End
ok 62 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable'
ok 63 - An object of class 'Bio::MAGE::Array::ArrayManufactureDeviation' isa 'Bio::MAGE::Extendable'
ok
t/Association.t ..................
1..8
ok 1 - CARD_1: testing full path
ok 2 - CARD_1: testing import
ok 3 - CARD_0_OR_1: testing full path
ok 4 - CARD_0_OR_1: testing import
ok 5 - CARD_1_TO_N: testing full path
ok 6 - CARD_1_TO_N: testing import
ok 7 - CARD_0_TO_N: testing full path
ok 8 - CARD_0_TO_N: testing import
ok
t/Audit.t ........................
1..104
ok 1 - use Bio::MAGE::AuditAndSecurity::Audit;
ok 2 - An object of class 'Bio::MAGE::AuditAndSecurity::Audit' isa 'Bio::MAGE::AuditAndSecurity::Audit'
ok 3 - package
ok 4 - class_name
ok 5 - date new
ok 6 - date getter/setter
ok 7 - date getter throws exception with argument
ok 8 - date setter throws exception with no argument
ok 9 - date setter throws exception with too many argument
ok 10 - date setter accepts undef
ok 11 - action new
ok 12 - action getter/setter
ok 13 - action getter throws exception with argument
ok 14 - action setter throws exception with no argument
ok 15 - action setter throws exception with too many argument
ok 16 - action setter accepts undef
ok 17 - action setter throws exception with bad argument
ok 18 - action accepts creation
ok 19 - action accepts modification
ok 20 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::AuditAndSecurity::Contact'
ok 21 - setPerformer returns value
ok 22 - getPerformer fetches correct value
ok 23 - setPerformer throws exception with bad argument
ok 24 - getPerformer throws exception with argument
ok 25 - setPerformer throws exception with no argument
ok 26 - setPerformer throws exception with too many argument
ok 27 - setPerformer accepts undef
ok 28 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 29 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 30 - performer->other() is a valid Bio::MAGE::Association::End
ok 31 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 32 - performer->self() is a valid Bio::MAGE::Association::End
ok 33 - descriptions set in new()
ok 34 - setDescriptions returns correct value
ok 35 - getDescriptions fetches correct value
ok 36 - addDescriptions returns number of items in list
ok 37 - addDescriptions adds correct value
ok 38 - setDescriptions throws exception with non-array argument
ok 39 - setDescriptions throws exception with bad argument array
ok 40 - addDescriptions throws exception with no arguments
ok 41 - addDescriptions throws exception with bad array
ok 42 - setDescriptions accepts empty array ref
ok 43 - getDescriptions throws exception with argument
ok 44 - setDescriptions throws exception with no argument
ok 45 - setDescriptions throws exception with too many argument
ok 46 - setDescriptions accepts undef
ok 47 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 48 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 49 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 50 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 51 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 52 - auditTrail set in new()
ok 53 - setAuditTrail returns correct value
ok 54 - getAuditTrail fetches correct value
ok 55 - addAuditTrail returns number of items in list
ok 56 - addAuditTrail adds correct value
ok 57 - setAuditTrail throws exception with non-array argument
ok 58 - setAuditTrail throws exception with bad argument array
ok 59 - addAuditTrail throws exception with no arguments
ok 60 - addAuditTrail throws exception with bad array
ok 61 - setAuditTrail accepts empty array ref
ok 62 - getAuditTrail throws exception with argument
ok 63 - setAuditTrail throws exception with no argument
ok 64 - setAuditTrail throws exception with too many argument
ok 65 - setAuditTrail accepts undef
ok 66 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 67 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 68 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 69 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 70 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 71 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 72 - setSecurity returns value
ok 73 - getSecurity fetches correct value
ok 74 - setSecurity throws exception with bad argument
ok 75 - getSecurity throws exception with argument
ok 76 - setSecurity throws exception with no argument
ok 77 - setSecurity throws exception with too many argument
ok 78 - setSecurity accepts undef
ok 79 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 80 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 81 - security->other() is a valid Bio::MAGE::Association::End
ok 82 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 83 - security->self() is a valid Bio::MAGE::Association::End
ok 84 - propertySets set in new()
ok 85 - setPropertySets returns correct value
ok 86 - getPropertySets fetches correct value
ok 87 - addPropertySets returns number of items in list
ok 88 - addPropertySets adds correct value
ok 89 - setPropertySets throws exception with non-array argument
ok 90 - setPropertySets throws exception with bad argument array
ok 91 - addPropertySets throws exception with no arguments
ok 92 - addPropertySets throws exception with bad array
ok 93 - setPropertySets accepts empty array ref
ok 94 - getPropertySets throws exception with argument
ok 95 - setPropertySets throws exception with no argument
ok 96 - setPropertySets throws exception with too many argument
ok 97 - setPropertySets accepts undef
ok 98 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 99 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 100 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 101 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 102 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 103 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable'
ok 104 - An object of class 'Bio::MAGE::AuditAndSecurity::Audit' isa 'Bio::MAGE::Describable'
ok
t/AuditAndSecurity_package.t .....
1..29
ok 1 - use Bio::MAGE::AuditAndSecurity;
ok 2 - number of subclasses
ok 3 - An object of class 'Bio::MAGE::AuditAndSecurity::Person' isa 'Bio::MAGE::AuditAndSecurity::Person'
ok 4 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 5 - An object of class 'Bio::MAGE::AuditAndSecurity::Audit' isa 'Bio::MAGE::AuditAndSecurity::Audit'
ok 6 - An object of class 'Bio::MAGE::AuditAndSecurity::Organization' isa 'Bio::MAGE::AuditAndSecurity::Organization'
ok 7 - An object of class 'Bio::MAGE::AuditAndSecurity::SecurityGroup' isa 'Bio::MAGE::AuditAndSecurity::SecurityGroup'
ok 8 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::AuditAndSecurity::Contact'
ok 9 - An object of class 'Bio::MAGE::AuditAndSecurity' isa 'Bio::MAGE::AuditAndSecurity'
ok 10 - tagname
ok 11 - xml_lists
ok 12 - A reference of type 'ARRAY' isa 'ARRAY'
ok 13 - contact_list empty
ok 14 - A reference of type 'ARRAY' isa 'ARRAY'
ok 15 - getContact_list empty
ok 16 - A reference of type 'ARRAY' isa 'ARRAY'
ok 17 - getContact_list not empty
ok 18 - A reference of type 'ARRAY' isa 'ARRAY'
ok 19 - securitygroup_list empty
ok 20 - A reference of type 'ARRAY' isa 'ARRAY'
ok 21 - getSecurityGroup_list empty
ok 22 - A reference of type 'ARRAY' isa 'ARRAY'
ok 23 - getSecurityGroup_list not empty
ok 24 - A reference of type 'ARRAY' isa 'ARRAY'
ok 25 - security_list empty
ok 26 - A reference of type 'ARRAY' isa 'ARRAY'
ok 27 - getSecurity_list empty
ok 28 - A reference of type 'ARRAY' isa 'ARRAY'
ok 29 - getSecurity_list not empty
ok
t/Base.t .........................
1..32
ok 1 - use Bio::MAGE::Base;
ok 2 - use Foo::Bar;
ok 3 - An object of class 'Foo::Bar' isa 'Foo::Bar'
ok 4 - Foo::Bar has 2 slots
ok 5 - Foo::Bar has one attribute
ok 6 - Foo::Bar has one association
ok 7 - Foo::Bar has one subclass
ok 8 - Foo::Bar has one superclass
ok 9 - Foo::Bar class_name
ok 10 - 'can set slots in new()' isa 'Foo::Bar'
ok 11 - 'can retrieve foo value' isa 'HASH'
ok 12 - foo has correct value
ok 13 - 'can retrieve bar value' isa 'ARRAY'
ok 14 - bar has correct count
ok 15 - bar has correct value
ok 16 - 'copy constructor works' isa 'Foo::Bar'
ok 17 - 'copy constructor can retrieve foo value' isa 'HASH'
ok 18 - copy constructor foo has correct value
ok 19 - 'copy constructor can retrieve bar value' isa 'ARRAY'
ok 20 - copy constructor bar has correct count
ok 21 - copy constructor bar has correct value
ok 22 - 'can set get/set slots in new()' isa 'Foo::Bar'
ok 23 - 'can retrieve bar value' isa 'ARRAY'
ok 24 - bar has correct count
ok 25 - bar has correct value
ok 26 - 'can set association/attribute slots in new()' isa 'Foo::Bar'
ok 27 - attr1 has correct value
ok 28 - assoc1 has correct value
ok 29 - get_slot works
ok 30 - get_slots works
ok 31 - set_slot works
ok 32 - set_slots works
ok
t/BibliographicReference.t .......
1..174
ok 1 - use Bio::MAGE::BQS::BibliographicReference;
ok 2 - An object of class 'Bio::MAGE::BQS::BibliographicReference' isa 'Bio::MAGE::BQS::BibliographicReference'
ok 3 - package
ok 4 - class_name
ok 5 - authors new
ok 6 - authors getter/setter
ok 7 - authors getter throws exception with argument
ok 8 - authors setter throws exception with no argument
ok 9 - authors setter throws exception with too many argument
ok 10 - authors setter accepts undef
ok 11 - URI new
ok 12 - URI getter/setter
ok 13 - URI getter throws exception with argument
ok 14 - URI setter throws exception with no argument
ok 15 - URI setter throws exception with too many argument
ok 16 - URI setter accepts undef
ok 17 - volume new
ok 18 - volume getter/setter
ok 19 - volume getter throws exception with argument
ok 20 - volume setter throws exception with no argument
ok 21 - volume setter throws exception with too many argument
ok 22 - volume setter accepts undef
ok 23 - issue new
ok 24 - issue getter/setter
ok 25 - issue getter throws exception with argument
ok 26 - issue setter throws exception with no argument
ok 27 - issue setter throws exception with too many argument
ok 28 - issue setter accepts undef
ok 29 - editor new
ok 30 - editor getter/setter
ok 31 - editor getter throws exception with argument
ok 32 - editor setter throws exception with no argument
ok 33 - editor setter throws exception with too many argument
ok 34 - editor setter accepts undef
ok 35 - title new
ok 36 - title getter/setter
ok 37 - title getter throws exception with argument
ok 38 - title setter throws exception with no argument
ok 39 - title setter throws exception with too many argument
ok 40 - title setter accepts undef
ok 41 - publication new
ok 42 - publication getter/setter
ok 43 - publication getter throws exception with argument
ok 44 - publication setter throws exception with no argument
ok 45 - publication setter throws exception with too many argument
ok 46 - publication setter accepts undef
ok 47 - publisher new
ok 48 - publisher getter/setter
ok 49 - publisher getter throws exception with argument
ok 50 - publisher setter throws exception with no argument
ok 51 - publisher setter throws exception with too many argument
ok 52 - publisher setter accepts undef
ok 53 - year new
ok 54 - year getter/setter
ok 55 - year getter throws exception with argument
ok 56 - year setter throws exception with no argument
ok 57 - year setter throws exception with too many argument
ok 58 - year setter accepts undef
ok 59 - pages new
ok 60 - pages getter/setter
ok 61 - pages getter throws exception with argument
ok 62 - pages setter throws exception with no argument
ok 63 - pages setter throws exception with too many argument
ok 64 - pages setter accepts undef
ok 65 - parameters set in new()
ok 66 - setParameters returns correct value
ok 67 - getParameters fetches correct value
ok 68 - addParameters returns number of items in list
ok 69 - addParameters adds correct value
ok 70 - setParameters throws exception with non-array argument
ok 71 - setParameters throws exception with bad argument array
ok 72 - addParameters throws exception with no arguments
ok 73 - addParameters throws exception with bad array
ok 74 - setParameters accepts empty array ref
ok 75 - getParameters throws exception with argument
ok 76 - setParameters throws exception with no argument
ok 77 - setParameters throws exception with too many argument
ok 78 - setParameters accepts undef
ok 79 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 80 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 81 - parameters->other() is a valid Bio::MAGE::Association::End
ok 82 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 83 - parameters->self() is a valid Bio::MAGE::Association::End
ok 84 - accessions set in new()
ok 85 - setAccessions returns correct value
ok 86 - getAccessions fetches correct value
ok 87 - addAccessions returns number of items in list
ok 88 - addAccessions adds correct value
ok 89 - setAccessions throws exception with non-array argument
ok 90 - setAccessions throws exception with bad argument array
ok 91 - addAccessions throws exception with no arguments
ok 92 - addAccessions throws exception with bad array
ok 93 - setAccessions accepts empty array ref
ok 94 - getAccessions throws exception with argument
ok 95 - setAccessions throws exception with no argument
ok 96 - setAccessions throws exception with too many argument
ok 97 - setAccessions accepts undef
ok 98 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 99 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 100 - accessions->other() is a valid Bio::MAGE::Association::End
ok 101 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 102 - accessions->self() is a valid Bio::MAGE::Association::End
ok 103 - descriptions set in new()
ok 104 - setDescriptions returns correct value
ok 105 - getDescriptions fetches correct value
ok 106 - addDescriptions returns number of items in list
ok 107 - addDescriptions adds correct value
ok 108 - setDescriptions throws exception with non-array argument
ok 109 - setDescriptions throws exception with bad argument array
ok 110 - addDescriptions throws exception with no arguments
ok 111 - addDescriptions throws exception with bad array
ok 112 - setDescriptions accepts empty array ref
ok 113 - getDescriptions throws exception with argument
ok 114 - setDescriptions throws exception with no argument
ok 115 - setDescriptions throws exception with too many argument
ok 116 - setDescriptions accepts undef
ok 117 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 118 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 119 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 120 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 121 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 122 - auditTrail set in new()
ok 123 - setAuditTrail returns correct value
ok 124 - getAuditTrail fetches correct value
ok 125 - addAuditTrail returns number of items in list
ok 126 - addAuditTrail adds correct value
ok 127 - setAuditTrail throws exception with non-array argument
ok 128 - setAuditTrail throws exception with bad argument array
ok 129 - addAuditTrail throws exception with no arguments
ok 130 - addAuditTrail throws exception with bad array
ok 131 - setAuditTrail accepts empty array ref
ok 132 - getAuditTrail throws exception with argument
ok 133 - setAuditTrail throws exception with no argument
ok 134 - setAuditTrail throws exception with too many argument
ok 135 - setAuditTrail accepts undef
ok 136 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 137 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 138 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 139 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 140 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 141 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 142 - setSecurity returns value
ok 143 - getSecurity fetches correct value
ok 144 - setSecurity throws exception with bad argument
ok 145 - getSecurity throws exception with argument
ok 146 - setSecurity throws exception with no argument
ok 147 - setSecurity throws exception with too many argument
ok 148 - setSecurity accepts undef
ok 149 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 150 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 151 - security->other() is a valid Bio::MAGE::Association::End
ok 152 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 153 - security->self() is a valid Bio::MAGE::Association::End
ok 154 - propertySets set in new()
ok 155 - setPropertySets returns correct value
ok 156 - getPropertySets fetches correct value
ok 157 - addPropertySets returns number of items in list
ok 158 - addPropertySets adds correct value
ok 159 - setPropertySets throws exception with non-array argument
ok 160 - setPropertySets throws exception with bad argument array
ok 161 - addPropertySets throws exception with no arguments
ok 162 - addPropertySets throws exception with bad array
ok 163 - setPropertySets accepts empty array ref
ok 164 - getPropertySets throws exception with argument
ok 165 - setPropertySets throws exception with no argument
ok 166 - setPropertySets throws exception with too many argument
ok 167 - setPropertySets accepts undef
ok 168 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 169 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 170 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 171 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 172 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 173 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable'
ok 174 - An object of class 'Bio::MAGE::BQS::BibliographicReference' isa 'Bio::MAGE::Describable'
ok
t/BioAssay.t .....................
1..132
ok 1 - use Bio::MAGE::BioAssay::BioAssay;
ok 2 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::BioAssay::BioAssay'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - bioAssayFactorValues set in new()
ok 18 - setBioAssayFactorValues returns correct value
ok 19 - getBioAssayFactorValues fetches correct value
ok 20 - addBioAssayFactorValues returns number of items in list
ok 21 - addBioAssayFactorValues adds correct value
ok 22 - setBioAssayFactorValues throws exception with non-array argument
ok 23 - setBioAssayFactorValues throws exception with bad argument array
ok 24 - addBioAssayFactorValues throws exception with no arguments
ok 25 - addBioAssayFactorValues throws exception with bad array
ok 26 - setBioAssayFactorValues accepts empty array ref
ok 27 - getBioAssayFactorValues throws exception with argument
ok 28 - setBioAssayFactorValues throws exception with no argument
ok 29 - setBioAssayFactorValues throws exception with too many argument
ok 30 - setBioAssayFactorValues accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - bioAssayFactorValues->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - bioAssayFactorValues->self() is a valid Bio::MAGE::Association::End
ok 36 - channels set in new()
ok 37 - setChannels returns correct value
ok 38 - getChannels fetches correct value
ok 39 - addChannels returns number of items in list
ok 40 - addChannels adds correct value
ok 41 - setChannels throws exception with non-array argument
ok 42 - setChannels throws exception with bad argument array
ok 43 - addChannels throws exception with no arguments
ok 44 - addChannels throws exception with bad array
ok 45 - setChannels accepts empty array ref
ok 46 - getChannels throws exception with argument
ok 47 - setChannels throws exception with no argument
ok 48 - setChannels throws exception with too many argument
ok 49 - setChannels accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - channels->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - channels->self() is a valid Bio::MAGE::Association::End
ok 55 - descriptions set in new()
ok 56 - setDescriptions returns correct value
ok 57 - getDescriptions fetches correct value
ok 58 - addDescriptions returns number of items in list
ok 59 - addDescriptions adds correct value
ok 60 - setDescriptions throws exception with non-array argument
ok 61 - setDescriptions throws exception with bad argument array
ok 62 - addDescriptions throws exception with no arguments
ok 63 - addDescriptions throws exception with bad array
ok 64 - setDescriptions accepts empty array ref
ok 65 - getDescriptions throws exception with argument
ok 66 - setDescriptions throws exception with no argument
ok 67 - setDescriptions throws exception with too many argument
ok 68 - setDescriptions accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 75 - setSecurity returns value
ok 76 - getSecurity fetches correct value
ok 77 - setSecurity throws exception with bad argument
ok 78 - getSecurity throws exception with argument
ok 79 - setSecurity throws exception with no argument
ok 80 - setSecurity throws exception with too many argument
ok 81 - setSecurity accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - security->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - security->self() is a valid Bio::MAGE::Association::End
ok 87 - auditTrail set in new()
ok 88 - setAuditTrail returns correct value
ok 89 - getAuditTrail fetches correct value
ok 90 - addAuditTrail returns number of items in list
ok 91 - addAuditTrail adds correct value
ok 92 - setAuditTrail throws exception with non-array argument
ok 93 - setAuditTrail throws exception with bad argument array
ok 94 - addAuditTrail throws exception with no arguments
ok 95 - addAuditTrail throws exception with bad array
ok 96 - setAuditTrail accepts empty array ref
ok 97 - getAuditTrail throws exception with argument
ok 98 - setAuditTrail throws exception with no argument
ok 99 - setAuditTrail throws exception with too many argument
ok 100 - setAuditTrail accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 106 - propertySets set in new()
ok 107 - setPropertySets returns correct value
ok 108 - getPropertySets fetches correct value
ok 109 - addPropertySets returns number of items in list
ok 110 - addPropertySets adds correct value
ok 111 - setPropertySets throws exception with non-array argument
ok 112 - setPropertySets throws exception with bad argument array
ok 113 - addPropertySets throws exception with no arguments
ok 114 - addPropertySets throws exception with bad array
ok 115 - setPropertySets accepts empty array ref
ok 116 - getPropertySets throws exception with argument
ok 117 - setPropertySets throws exception with no argument
ok 118 - setPropertySets throws exception with too many argument
ok 119 - setPropertySets accepts undef
ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 122 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 124 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 125 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay'
ok 126 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::BioAssay'
ok 127 - An object of class 'Bio::MAGE::BioAssay::DerivedBioAssay' isa 'Bio::MAGE::BioAssay::DerivedBioAssay'
ok 128 - An object of class 'Bio::MAGE::BioAssay::DerivedBioAssay' isa 'Bio::MAGE::BioAssay::BioAssay'
ok 129 - An object of class 'Bio::MAGE::BioAssay::MeasuredBioAssay' isa 'Bio::MAGE::BioAssay::MeasuredBioAssay'
ok 130 - An object of class 'Bio::MAGE::BioAssay::MeasuredBioAssay' isa 'Bio::MAGE::BioAssay::BioAssay'
ok 131 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 132 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::Identifiable'
ok
t/BioAssay_package.t .............
1..28
ok 1 - use Bio::MAGE::BioAssay;
ok 2 - number of subclasses
ok 3 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay'
ok 4 - An object of class 'Bio::MAGE::BioAssay::DerivedBioAssay' isa 'Bio::MAGE::BioAssay::DerivedBioAssay'
ok 5 - An object of class 'Bio::MAGE::BioAssay::Image' isa 'Bio::MAGE::BioAssay::Image'
ok 6 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::BioAssay::BioAssay'
ok 7 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel'
ok 8 - An object of class 'Bio::MAGE::BioAssay::MeasuredBioAssay' isa 'Bio::MAGE::BioAssay::MeasuredBioAssay'
ok 9 - An object of class 'Bio::MAGE::BioAssay::BioAssayCreation' isa 'Bio::MAGE::BioAssay::BioAssayCreation'
ok 10 - An object of class 'Bio::MAGE::BioAssay::FeatureExtraction' isa 'Bio::MAGE::BioAssay::FeatureExtraction'
ok 11 - An object of class 'Bio::MAGE::BioAssay::Hybridization' isa 'Bio::MAGE::BioAssay::Hybridization'
ok 12 - An object of class 'Bio::MAGE::BioAssay::ImageAcquisition' isa 'Bio::MAGE::BioAssay::ImageAcquisition'
ok 13 - An object of class 'Bio::MAGE::BioAssay::BioAssayTreatment' isa 'Bio::MAGE::BioAssay::BioAssayTreatment'
ok 14 - An object of class 'Bio::MAGE::BioAssay' isa 'Bio::MAGE::BioAssay'
ok 15 - tagname
ok 16 - xml_lists
ok 17 - A reference of type 'ARRAY' isa 'ARRAY'
ok 18 - channel_list empty
ok 19 - A reference of type 'ARRAY' isa 'ARRAY'
ok 20 - getChannel_list empty
ok 21 - A reference of type 'ARRAY' isa 'ARRAY'
ok 22 - getChannel_list not empty
ok 23 - A reference of type 'ARRAY' isa 'ARRAY'
ok 24 - bioassay_list empty
ok 25 - A reference of type 'ARRAY' isa 'ARRAY'
ok 26 - getBioAssay_list empty
ok 27 - A reference of type 'ARRAY' isa 'ARRAY'
ok 28 - getBioAssay_list not empty
ok
t/BioAssayCreation.t .............
1..154
ok 1 - use Bio::MAGE::BioAssay::BioAssayCreation;
ok 2 - An object of class 'Bio::MAGE::BioAssay::BioAssayCreation' isa 'Bio::MAGE::BioAssay::BioAssayCreation'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - sourceBioMaterialMeasurements set in new()
ok 18 - setSourceBioMaterialMeasurements returns correct value
ok 19 - getSourceBioMaterialMeasurements fetches correct value
ok 20 - addSourceBioMaterialMeasurements returns number of items in list
ok 21 - addSourceBioMaterialMeasurements adds correct value
ok 22 - setSourceBioMaterialMeasurements throws exception with non-array argument
ok 23 - setSourceBioMaterialMeasurements throws exception with bad argument array
ok 24 - addSourceBioMaterialMeasurements throws exception with no arguments
ok 25 - addSourceBioMaterialMeasurements throws exception with bad array
ok 26 - setSourceBioMaterialMeasurements accepts empty array ref
ok 27 - getSourceBioMaterialMeasurements throws exception with argument
ok 28 - setSourceBioMaterialMeasurements throws exception with no argument
ok 29 - setSourceBioMaterialMeasurements throws exception with too many argument
ok 30 - setSourceBioMaterialMeasurements accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - sourceBioMaterialMeasurements->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - sourceBioMaterialMeasurements->self() is a valid Bio::MAGE::Association::End
ok 36 - auditTrail set in new()
ok 37 - setAuditTrail returns correct value
ok 38 - getAuditTrail fetches correct value
ok 39 - addAuditTrail returns number of items in list
ok 40 - addAuditTrail adds correct value
ok 41 - setAuditTrail throws exception with non-array argument
ok 42 - setAuditTrail throws exception with bad argument array
ok 43 - addAuditTrail throws exception with no arguments
ok 44 - addAuditTrail throws exception with bad array
ok 45 - setAuditTrail accepts empty array ref
ok 46 - getAuditTrail throws exception with argument
ok 47 - setAuditTrail throws exception with no argument
ok 48 - setAuditTrail throws exception with too many argument
ok 49 - setAuditTrail accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 55 - propertySets set in new()
ok 56 - setPropertySets returns correct value
ok 57 - getPropertySets fetches correct value
ok 58 - addPropertySets returns number of items in list
ok 59 - addPropertySets adds correct value
ok 60 - setPropertySets throws exception with non-array argument
ok 61 - setPropertySets throws exception with bad argument array
ok 62 - addPropertySets throws exception with no arguments
ok 63 - addPropertySets throws exception with bad array
ok 64 - setPropertySets accepts empty array ref
ok 65 - getPropertySets throws exception with argument
ok 66 - setPropertySets throws exception with no argument
ok 67 - setPropertySets throws exception with too many argument
ok 68 - setPropertySets accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 74 - protocolApplications set in new()
ok 75 - setProtocolApplications returns correct value
ok 76 - getProtocolApplications fetches correct value
ok 77 - addProtocolApplications returns number of items in list
ok 78 - addProtocolApplications adds correct value
ok 79 - setProtocolApplications throws exception with non-array argument
ok 80 - setProtocolApplications throws exception with bad argument array
ok 81 - addProtocolApplications throws exception with no arguments
ok 82 - addProtocolApplications throws exception with bad array
ok 83 - setProtocolApplications accepts empty array ref
ok 84 - getProtocolApplications throws exception with argument
ok 85 - setProtocolApplications throws exception with no argument
ok 86 - setProtocolApplications throws exception with too many argument
ok 87 - setProtocolApplications accepts undef
ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 90 - protocolApplications->other() is a valid Bio::MAGE::Association::End
ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 92 - protocolApplications->self() is a valid Bio::MAGE::Association::End
ok 93 - An object of class 'Bio::MAGE::Array::Array' isa 'Bio::MAGE::Array::Array'
ok 94 - setArray returns value
ok 95 - getArray fetches correct value
ok 96 - setArray throws exception with bad argument
ok 97 - getArray throws exception with argument
ok 98 - setArray throws exception with no argument
ok 99 - setArray throws exception with too many argument
ok 100 - setArray accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - array->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - array->self() is a valid Bio::MAGE::Association::End
ok 106 - descriptions set in new()
ok 107 - setDescriptions returns correct value
ok 108 - getDescriptions fetches correct value
ok 109 - addDescriptions returns number of items in list
ok 110 - addDescriptions adds correct value
ok 111 - setDescriptions throws exception with non-array argument
ok 112 - setDescriptions throws exception with bad argument array
ok 113 - addDescriptions throws exception with no arguments
ok 114 - addDescriptions throws exception with bad array
ok 115 - setDescriptions accepts empty array ref
ok 116 - getDescriptions throws exception with argument
ok 117 - setDescriptions throws exception with no argument
ok 118 - setDescriptions throws exception with too many argument
ok 119 - setDescriptions accepts undef
ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 122 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 124 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 125 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 126 - setSecurity returns value
ok 127 - getSecurity fetches correct value
ok 128 - setSecurity throws exception with bad argument
ok 129 - getSecurity throws exception with argument
ok 130 - setSecurity throws exception with no argument
ok 131 - setSecurity throws exception with too many argument
ok 132 - setSecurity accepts undef
ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 135 - security->other() is a valid Bio::MAGE::Association::End
ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 137 - security->self() is a valid Bio::MAGE::Association::End
ok 138 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay'
ok 139 - setPhysicalBioAssayTarget returns value
ok 140 - getPhysicalBioAssayTarget fetches correct value
ok 141 - setPhysicalBioAssayTarget throws exception with bad argument
ok 142 - getPhysicalBioAssayTarget throws exception with argument
ok 143 - setPhysicalBioAssayTarget throws exception with no argument
ok 144 - setPhysicalBioAssayTarget throws exception with too many argument
ok 145 - setPhysicalBioAssayTarget accepts undef
ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 148 - physicalBioAssayTarget->other() is a valid Bio::MAGE::Association::End
ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 150 - physicalBioAssayTarget->self() is a valid Bio::MAGE::Association::End
ok 151 - An object of class 'Bio::MAGE::BioAssay::Hybridization' isa 'Bio::MAGE::BioAssay::Hybridization'
ok 152 - An object of class 'Bio::MAGE::BioAssay::Hybridization' isa 'Bio::MAGE::BioAssay::BioAssayCreation'
ok 153 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent'
ok 154 - An object of class 'Bio::MAGE::BioAssay::BioAssayCreation' isa 'Bio::MAGE::BioEvent::BioEvent'
ok
t/BioAssayData.t .................
1..163
ok 1 - use Bio::MAGE::BioAssayData::BioAssayData;
ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::BioAssayData::BioAssayDimension'
ok 18 - setBioAssayDimension returns value
ok 19 - getBioAssayDimension fetches correct value
ok 20 - setBioAssayDimension throws exception with bad argument
ok 21 - getBioAssayDimension throws exception with argument
ok 22 - setBioAssayDimension throws exception with no argument
ok 23 - setBioAssayDimension throws exception with too many argument
ok 24 - setBioAssayDimension accepts undef
ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 27 - bioAssayDimension->other() is a valid Bio::MAGE::Association::End
ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 29 - bioAssayDimension->self() is a valid Bio::MAGE::Association::End
ok 30 - auditTrail set in new()
ok 31 - setAuditTrail returns correct value
ok 32 - getAuditTrail fetches correct value
ok 33 - addAuditTrail returns number of items in list
ok 34 - addAuditTrail adds correct value
ok 35 - setAuditTrail throws exception with non-array argument
ok 36 - setAuditTrail throws exception with bad argument array
ok 37 - addAuditTrail throws exception with no arguments
ok 38 - addAuditTrail throws exception with bad array
ok 39 - setAuditTrail accepts empty array ref
ok 40 - getAuditTrail throws exception with argument
ok 41 - setAuditTrail throws exception with no argument
ok 42 - setAuditTrail throws exception with too many argument
ok 43 - setAuditTrail accepts undef
ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 46 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 48 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 49 - propertySets set in new()
ok 50 - setPropertySets returns correct value
ok 51 - getPropertySets fetches correct value
ok 52 - addPropertySets returns number of items in list
ok 53 - addPropertySets adds correct value
ok 54 - setPropertySets throws exception with non-array argument
ok 55 - setPropertySets throws exception with bad argument array
ok 56 - addPropertySets throws exception with no arguments
ok 57 - addPropertySets throws exception with bad array
ok 58 - setPropertySets accepts empty array ref
ok 59 - getPropertySets throws exception with argument
ok 60 - setPropertySets throws exception with no argument
ok 61 - setPropertySets throws exception with too many argument
ok 62 - setPropertySets accepts undef
ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 65 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 67 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 68 - summaryStatistics set in new()
ok 69 - setSummaryStatistics returns correct value
ok 70 - getSummaryStatistics fetches correct value
ok 71 - addSummaryStatistics returns number of items in list
ok 72 - addSummaryStatistics adds correct value
ok 73 - setSummaryStatistics throws exception with non-array argument
ok 74 - setSummaryStatistics throws exception with bad argument array
ok 75 - addSummaryStatistics throws exception with no arguments
ok 76 - addSummaryStatistics throws exception with bad array
ok 77 - setSummaryStatistics accepts empty array ref
ok 78 - getSummaryStatistics throws exception with argument
ok 79 - setSummaryStatistics throws exception with no argument
ok 80 - setSummaryStatistics throws exception with too many argument
ok 81 - setSummaryStatistics accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - summaryStatistics->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - summaryStatistics->self() is a valid Bio::MAGE::Association::End
ok 87 - descriptions set in new()
ok 88 - setDescriptions returns correct value
ok 89 - getDescriptions fetches correct value
ok 90 - addDescriptions returns number of items in list
ok 91 - addDescriptions adds correct value
ok 92 - setDescriptions throws exception with non-array argument
ok 93 - setDescriptions throws exception with bad argument array
ok 94 - addDescriptions throws exception with no arguments
ok 95 - addDescriptions throws exception with bad array
ok 96 - setDescriptions accepts empty array ref
ok 97 - getDescriptions throws exception with argument
ok 98 - setDescriptions throws exception with no argument
ok 99 - setDescriptions throws exception with too many argument
ok 100 - setDescriptions accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 106 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension'
ok 107 - setDesignElementDimension returns value
ok 108 - getDesignElementDimension fetches correct value
ok 109 - setDesignElementDimension throws exception with bad argument
ok 110 - getDesignElementDimension throws exception with argument
ok 111 - setDesignElementDimension throws exception with no argument
ok 112 - setDesignElementDimension throws exception with too many argument
ok 113 - setDesignElementDimension accepts undef
ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 116 - designElementDimension->other() is a valid Bio::MAGE::Association::End
ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 118 - designElementDimension->self() is a valid Bio::MAGE::Association::End
ok 119 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 120 - setSecurity returns value
ok 121 - getSecurity fetches correct value
ok 122 - setSecurity throws exception with bad argument
ok 123 - getSecurity throws exception with argument
ok 124 - setSecurity throws exception with no argument
ok 125 - setSecurity throws exception with too many argument
ok 126 - setSecurity accepts undef
ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 129 - security->other() is a valid Bio::MAGE::Association::End
ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 131 - security->self() is a valid Bio::MAGE::Association::End
ok 132 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues'
ok 133 - setBioDataValues returns value
ok 134 - getBioDataValues fetches correct value
ok 135 - setBioDataValues throws exception with bad argument
ok 136 - getBioDataValues throws exception with argument
ok 137 - setBioDataValues throws exception with no argument
ok 138 - setBioDataValues throws exception with too many argument
ok 139 - setBioDataValues accepts undef
ok 140 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 141 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 142 - bioDataValues->other() is a valid Bio::MAGE::Association::End
ok 143 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 144 - bioDataValues->self() is a valid Bio::MAGE::Association::End
ok 145 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::BioAssayData::QuantitationTypeDimension'
ok 146 - setQuantitationTypeDimension returns value
ok 147 - getQuantitationTypeDimension fetches correct value
ok 148 - setQuantitationTypeDimension throws exception with bad argument
ok 149 - getQuantitationTypeDimension throws exception with argument
ok 150 - setQuantitationTypeDimension throws exception with no argument
ok 151 - setQuantitationTypeDimension throws exception with too many argument
ok 152 - setQuantitationTypeDimension accepts undef
ok 153 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 155 - quantitationTypeDimension->other() is a valid Bio::MAGE::Association::End
ok 156 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 157 - quantitationTypeDimension->self() is a valid Bio::MAGE::Association::End
ok 158 - An object of class 'Bio::MAGE::BioAssayData::DerivedBioAssayData' isa 'Bio::MAGE::BioAssayData::DerivedBioAssayData'
ok 159 - An object of class 'Bio::MAGE::BioAssayData::DerivedBioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData'
ok 160 - An object of class 'Bio::MAGE::BioAssayData::MeasuredBioAssayData' isa 'Bio::MAGE::BioAssayData::MeasuredBioAssayData'
ok 161 - An object of class 'Bio::MAGE::BioAssayData::MeasuredBioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData'
ok 162 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 163 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::Identifiable'
ok
t/BioAssayData_package.t .........
1..61
ok 1 - use Bio::MAGE::BioAssayData;
ok 2 - number of subclasses
ok 3 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData'
ok 4 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::BioAssayData::QuantitationTypeDimension'
ok 5 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMapping' isa 'Bio::MAGE::BioAssayData::BioAssayMapping'
ok 6 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension'
ok 7 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDatum' isa 'Bio::MAGE::BioAssayData::BioAssayDatum'
ok 8 - An object of class 'Bio::MAGE::BioAssayData::DerivedBioAssayData' isa 'Bio::MAGE::BioAssayData::DerivedBioAssayData'
ok 9 - An object of class 'Bio::MAGE::BioAssayData::MeasuredBioAssayData' isa 'Bio::MAGE::BioAssayData::MeasuredBioAssayData'
ok 10 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' isa 'Bio::MAGE::BioAssayData::QuantitationTypeMapping'
ok 11 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMapping' isa 'Bio::MAGE::BioAssayData::DesignElementMapping'
ok 12 - An object of class 'Bio::MAGE::BioAssayData::BioDataCube' isa 'Bio::MAGE::BioAssayData::BioDataCube'
ok 13 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues'
ok 14 - An object of class 'Bio::MAGE::BioAssayData::BioDataTuples' isa 'Bio::MAGE::BioAssayData::BioDataTuples'
ok 15 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::BioAssayData::BioAssayDimension'
ok 16 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMap' isa 'Bio::MAGE::BioAssayData::QuantitationTypeMap'
ok 17 - An object of class 'Bio::MAGE::BioAssayData::Transformation' isa 'Bio::MAGE::BioAssayData::Transformation'
ok 18 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap'
ok 19 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMap' isa 'Bio::MAGE::BioAssayData::BioAssayMap'
ok 20 - An object of class 'Bio::MAGE::BioAssayData::CompositeSequenceDimension' isa 'Bio::MAGE::BioAssayData::CompositeSequenceDimension'
ok 21 - An object of class 'Bio::MAGE::BioAssayData::ReporterDimension' isa 'Bio::MAGE::BioAssayData::ReporterDimension'
ok 22 - An object of class 'Bio::MAGE::BioAssayData::FeatureDimension' isa 'Bio::MAGE::BioAssayData::FeatureDimension'
ok 23 - An object of class 'Bio::MAGE::BioAssayData' isa 'Bio::MAGE::BioAssayData'
ok 24 - tagname
ok 25 - xml_lists
ok 26 - A reference of type 'ARRAY' isa 'ARRAY'
ok 27 - bioassaydimension_list empty
ok 28 - A reference of type 'ARRAY' isa 'ARRAY'
ok 29 - getBioAssayDimension_list empty
ok 30 - A reference of type 'ARRAY' isa 'ARRAY'
ok 31 - getBioAssayDimension_list not empty
ok 32 - A reference of type 'ARRAY' isa 'ARRAY'
ok 33 - designelementdimension_list empty
ok 34 - A reference of type 'ARRAY' isa 'ARRAY'
ok 35 - getDesignElementDimension_list empty
ok 36 - A reference of type 'ARRAY' isa 'ARRAY'
ok 37 - getDesignElementDimension_list not empty
ok 38 - A reference of type 'ARRAY' isa 'ARRAY'
ok 39 - quantitationtypedimension_list empty
ok 40 - A reference of type 'ARRAY' isa 'ARRAY'
ok 41 - getQuantitationTypeDimension_list empty
ok 42 - A reference of type 'ARRAY' isa 'ARRAY'
ok 43 - getQuantitationTypeDimension_list not empty
ok 44 - A reference of type 'ARRAY' isa 'ARRAY'
ok 45 - bioassaymap_list empty
ok 46 - A reference of type 'ARRAY' isa 'ARRAY'
ok 47 - getBioAssayMap_list empty
ok 48 - A reference of type 'ARRAY' isa 'ARRAY'
ok 49 - getBioAssayMap_list not empty
ok 50 - A reference of type 'ARRAY' isa 'ARRAY'
ok 51 - quantitationtypemap_list empty
ok 52 - A reference of type 'ARRAY' isa 'ARRAY'
ok 53 - getQuantitationTypeMap_list empty
ok 54 - A reference of type 'ARRAY' isa 'ARRAY'
ok 55 - getQuantitationTypeMap_list not empty
ok 56 - A reference of type 'ARRAY' isa 'ARRAY'
ok 57 - bioassaydata_list empty
ok 58 - A reference of type 'ARRAY' isa 'ARRAY'
ok 59 - getBioAssayData_list empty
ok 60 - A reference of type 'ARRAY' isa 'ARRAY'
ok 61 - getBioAssayData_list not empty
ok
t/BioAssayDataCluster.t ..........
1..120
ok 1 - use Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster;
ok 2 - An object of class 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster' isa 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - descriptions set in new()
ok 18 - setDescriptions returns correct value
ok 19 - getDescriptions fetches correct value
ok 20 - addDescriptions returns number of items in list
ok 21 - addDescriptions adds correct value
ok 22 - setDescriptions throws exception with non-array argument
ok 23 - setDescriptions throws exception with bad argument array
ok 24 - addDescriptions throws exception with no arguments
ok 25 - addDescriptions throws exception with bad array
ok 26 - setDescriptions accepts empty array ref
ok 27 - getDescriptions throws exception with argument
ok 28 - setDescriptions throws exception with no argument
ok 29 - setDescriptions throws exception with too many argument
ok 30 - setDescriptions accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 36 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 37 - setSecurity returns value
ok 38 - getSecurity fetches correct value
ok 39 - setSecurity throws exception with bad argument
ok 40 - getSecurity throws exception with argument
ok 41 - setSecurity throws exception with no argument
ok 42 - setSecurity throws exception with too many argument
ok 43 - setSecurity accepts undef
ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 46 - security->other() is a valid Bio::MAGE::Association::End
ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 48 - security->self() is a valid Bio::MAGE::Association::End
ok 49 - auditTrail set in new()
ok 50 - setAuditTrail returns correct value
ok 51 - getAuditTrail fetches correct value
ok 52 - addAuditTrail returns number of items in list
ok 53 - addAuditTrail adds correct value
ok 54 - setAuditTrail throws exception with non-array argument
ok 55 - setAuditTrail throws exception with bad argument array
ok 56 - addAuditTrail throws exception with no arguments
ok 57 - addAuditTrail throws exception with bad array
ok 58 - setAuditTrail accepts empty array ref
ok 59 - getAuditTrail throws exception with argument
ok 60 - setAuditTrail throws exception with no argument
ok 61 - setAuditTrail throws exception with too many argument
ok 62 - setAuditTrail accepts undef
ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 65 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 67 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 68 - nodes set in new()
ok 69 - setNodes returns correct value
ok 70 - getNodes fetches correct value
ok 71 - addNodes returns number of items in list
ok 72 - addNodes adds correct value
ok 73 - setNodes throws exception with non-array argument
ok 74 - setNodes throws exception with bad argument array
ok 75 - addNodes throws exception with no arguments
ok 76 - addNodes throws exception with bad array
ok 77 - setNodes accepts empty array ref
ok 78 - getNodes throws exception with argument
ok 79 - setNodes throws exception with no argument
ok 80 - setNodes throws exception with too many argument
ok 81 - setNodes accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - nodes->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - nodes->self() is a valid Bio::MAGE::Association::End
ok 87 - propertySets set in new()
ok 88 - setPropertySets returns correct value
ok 89 - getPropertySets fetches correct value
ok 90 - addPropertySets returns number of items in list
ok 91 - addPropertySets adds correct value
ok 92 - setPropertySets throws exception with non-array argument
ok 93 - setPropertySets throws exception with bad argument array
ok 94 - addPropertySets throws exception with no arguments
ok 95 - addPropertySets throws exception with bad array
ok 96 - setPropertySets accepts empty array ref
ok 97 - getPropertySets throws exception with argument
ok 98 - setPropertySets throws exception with no argument
ok 99 - setPropertySets throws exception with too many argument
ok 100 - setPropertySets accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 106 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData'
ok 107 - setClusterBioAssayData returns value
ok 108 - getClusterBioAssayData fetches correct value
ok 109 - setClusterBioAssayData throws exception with bad argument
ok 110 - getClusterBioAssayData throws exception with argument
ok 111 - setClusterBioAssayData throws exception with no argument
ok 112 - setClusterBioAssayData throws exception with too many argument
ok 113 - setClusterBioAssayData accepts undef
ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 116 - clusterBioAssayData->other() is a valid Bio::MAGE::Association::End
ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 118 - clusterBioAssayData->self() is a valid Bio::MAGE::Association::End
ok 119 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 120 - An object of class 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster' isa 'Bio::MAGE::Identifiable'
ok
t/BioAssayDatum.t ................
1..70
ok 1 - use Bio::MAGE::BioAssayData::BioAssayDatum;
ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDatum' isa 'Bio::MAGE::BioAssayData::BioAssayDatum'
ok 3 - package
ok 4 - class_name
ok 5 - value new
ok 6 - value getter/setter
ok 7 - value getter throws exception with argument
ok 8 - value setter throws exception with no argument
ok 9 - value setter throws exception with too many argument
ok 10 - value setter accepts undef
ok 11 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType'
ok 12 - setQuantitationType returns value
ok 13 - getQuantitationType fetches correct value
ok 14 - setQuantitationType throws exception with bad argument
ok 15 - getQuantitationType throws exception with argument
ok 16 - setQuantitationType throws exception with no argument
ok 17 - setQuantitationType throws exception with too many argument
ok 18 - setQuantitationType accepts undef
ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 21 - quantitationType->other() is a valid Bio::MAGE::Association::End
ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 23 - quantitationType->self() is a valid Bio::MAGE::Association::End
ok 24 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::BioAssay::BioAssay'
ok 25 - setBioAssay returns value
ok 26 - getBioAssay fetches correct value
ok 27 - setBioAssay throws exception with bad argument
ok 28 - getBioAssay throws exception with argument
ok 29 - setBioAssay throws exception with no argument
ok 30 - setBioAssay throws exception with too many argument
ok 31 - setBioAssay accepts undef
ok 32 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 33 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 34 - bioAssay->other() is a valid Bio::MAGE::Association::End
ok 35 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 36 - bioAssay->self() is a valid Bio::MAGE::Association::End
ok 37 - propertySets set in new()
ok 38 - setPropertySets returns correct value
ok 39 - getPropertySets fetches correct value
ok 40 - addPropertySets returns number of items in list
ok 41 - addPropertySets adds correct value
ok 42 - setPropertySets throws exception with non-array argument
ok 43 - setPropertySets throws exception with bad argument array
ok 44 - addPropertySets throws exception with no arguments
ok 45 - addPropertySets throws exception with bad array
ok 46 - setPropertySets accepts empty array ref
ok 47 - getPropertySets throws exception with argument
ok 48 - setPropertySets throws exception with no argument
ok 49 - setPropertySets throws exception with too many argument
ok 50 - setPropertySets accepts undef
ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 53 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 55 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 56 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::DesignElement::DesignElement'
ok 57 - setDesignElement returns value
ok 58 - getDesignElement fetches correct value
ok 59 - setDesignElement throws exception with bad argument
ok 60 - getDesignElement throws exception with argument
ok 61 - setDesignElement throws exception with no argument
ok 62 - setDesignElement throws exception with too many argument
ok 63 - setDesignElement accepts undef
ok 64 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 66 - designElement->other() is a valid Bio::MAGE::Association::End
ok 67 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 68 - designElement->self() is a valid Bio::MAGE::Association::End
ok 69 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable'
ok 70 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDatum' isa 'Bio::MAGE::Extendable'
ok
t/BioAssayDimension.t ............
1..107
ok 1 - use Bio::MAGE::BioAssayData::BioAssayDimension;
ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::BioAssayData::BioAssayDimension'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - bioAssays set in new()
ok 18 - setBioAssays returns correct value
ok 19 - getBioAssays fetches correct value
ok 20 - addBioAssays returns number of items in list
ok 21 - addBioAssays adds correct value
ok 22 - setBioAssays throws exception with non-array argument
ok 23 - setBioAssays throws exception with bad argument array
ok 24 - addBioAssays throws exception with no arguments
ok 25 - addBioAssays throws exception with bad array
ok 26 - setBioAssays accepts empty array ref
ok 27 - getBioAssays throws exception with argument
ok 28 - setBioAssays throws exception with no argument
ok 29 - setBioAssays throws exception with too many argument
ok 30 - setBioAssays accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - bioAssays->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - bioAssays->self() is a valid Bio::MAGE::Association::End
ok 36 - descriptions set in new()
ok 37 - setDescriptions returns correct value
ok 38 - getDescriptions fetches correct value
ok 39 - addDescriptions returns number of items in list
ok 40 - addDescriptions adds correct value
ok 41 - setDescriptions throws exception with non-array argument
ok 42 - setDescriptions throws exception with bad argument array
ok 43 - addDescriptions throws exception with no arguments
ok 44 - addDescriptions throws exception with bad array
ok 45 - setDescriptions accepts empty array ref
ok 46 - getDescriptions throws exception with argument
ok 47 - setDescriptions throws exception with no argument
ok 48 - setDescriptions throws exception with too many argument
ok 49 - setDescriptions accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 56 - setSecurity returns value
ok 57 - getSecurity fetches correct value
ok 58 - setSecurity throws exception with bad argument
ok 59 - getSecurity throws exception with argument
ok 60 - setSecurity throws exception with no argument
ok 61 - setSecurity throws exception with too many argument
ok 62 - setSecurity accepts undef
ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 65 - security->other() is a valid Bio::MAGE::Association::End
ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 67 - security->self() is a valid Bio::MAGE::Association::End
ok 68 - auditTrail set in new()
ok 69 - setAuditTrail returns correct value
ok 70 - getAuditTrail fetches correct value
ok 71 - addAuditTrail returns number of items in list
ok 72 - addAuditTrail adds correct value
ok 73 - setAuditTrail throws exception with non-array argument
ok 74 - setAuditTrail throws exception with bad argument array
ok 75 - addAuditTrail throws exception with no arguments
ok 76 - addAuditTrail throws exception with bad array
ok 77 - setAuditTrail accepts empty array ref
ok 78 - getAuditTrail throws exception with argument
ok 79 - setAuditTrail throws exception with no argument
ok 80 - setAuditTrail throws exception with too many argument
ok 81 - setAuditTrail accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 87 - propertySets set in new()
ok 88 - setPropertySets returns correct value
ok 89 - getPropertySets fetches correct value
ok 90 - addPropertySets returns number of items in list
ok 91 - addPropertySets adds correct value
ok 92 - setPropertySets throws exception with non-array argument
ok 93 - setPropertySets throws exception with bad argument array
ok 94 - addPropertySets throws exception with no arguments
ok 95 - addPropertySets throws exception with bad array
ok 96 - setPropertySets accepts empty array ref
ok 97 - getPropertySets throws exception with argument
ok 98 - setPropertySets throws exception with no argument
ok 99 - setPropertySets throws exception with too many argument
ok 100 - setPropertySets accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 106 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 107 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::Identifiable'
ok
t/BioAssayMap.t ..................
1..139
ok 1 - use Bio::MAGE::BioAssayData::BioAssayMap;
ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMap' isa 'Bio::MAGE::BioAssayData::BioAssayMap'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - protocolApplications set in new()
ok 18 - setProtocolApplications returns correct value
ok 19 - getProtocolApplications fetches correct value
ok 20 - addProtocolApplications returns number of items in list
ok 21 - addProtocolApplications adds correct value
ok 22 - setProtocolApplications throws exception with non-array argument
ok 23 - setProtocolApplications throws exception with bad argument array
ok 24 - addProtocolApplications throws exception with no arguments
ok 25 - addProtocolApplications throws exception with bad array
ok 26 - setProtocolApplications accepts empty array ref
ok 27 - getProtocolApplications throws exception with argument
ok 28 - setProtocolApplications throws exception with no argument
ok 29 - setProtocolApplications throws exception with too many argument
ok 30 - setProtocolApplications accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End
ok 36 - descriptions set in new()
ok 37 - setDescriptions returns correct value
ok 38 - getDescriptions fetches correct value
ok 39 - addDescriptions returns number of items in list
ok 40 - addDescriptions adds correct value
ok 41 - setDescriptions throws exception with non-array argument
ok 42 - setDescriptions throws exception with bad argument array
ok 43 - addDescriptions throws exception with no arguments
ok 44 - addDescriptions throws exception with bad array
ok 45 - setDescriptions accepts empty array ref
ok 46 - getDescriptions throws exception with argument
ok 47 - setDescriptions throws exception with no argument
ok 48 - setDescriptions throws exception with too many argument
ok 49 - setDescriptions accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 55 - An object of class 'Bio::MAGE::BioAssay::DerivedBioAssay' isa 'Bio::MAGE::BioAssay::DerivedBioAssay'
ok 56 - setBioAssayMapTarget returns value
ok 57 - getBioAssayMapTarget fetches correct value
ok 58 - setBioAssayMapTarget throws exception with bad argument
ok 59 - getBioAssayMapTarget throws exception with argument
ok 60 - setBioAssayMapTarget throws exception with no argument
ok 61 - setBioAssayMapTarget throws exception with too many argument
ok 62 - setBioAssayMapTarget accepts undef
ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 65 - bioAssayMapTarget->other() is a valid Bio::MAGE::Association::End
ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 67 - bioAssayMapTarget->self() is a valid Bio::MAGE::Association::End
ok 68 - sourceBioAssays set in new()
ok 69 - setSourceBioAssays returns correct value
ok 70 - getSourceBioAssays fetches correct value
ok 71 - addSourceBioAssays returns number of items in list
ok 72 - addSourceBioAssays adds correct value
ok 73 - setSourceBioAssays throws exception with non-array argument
ok 74 - setSourceBioAssays throws exception with bad argument array
ok 75 - addSourceBioAssays throws exception with no arguments
ok 76 - addSourceBioAssays throws exception with bad array
ok 77 - setSourceBioAssays accepts empty array ref
ok 78 - getSourceBioAssays throws exception with argument
ok 79 - setSourceBioAssays throws exception with no argument
ok 80 - setSourceBioAssays throws exception with too many argument
ok 81 - setSourceBioAssays accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - sourceBioAssays->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - sourceBioAssays->self() is a valid Bio::MAGE::Association::End
ok 87 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 88 - setSecurity returns value
ok 89 - getSecurity fetches correct value
ok 90 - setSecurity throws exception with bad argument
ok 91 - getSecurity throws exception with argument
ok 92 - setSecurity throws exception with no argument
ok 93 - setSecurity throws exception with too many argument
ok 94 - setSecurity accepts undef
ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 97 - security->other() is a valid Bio::MAGE::Association::End
ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 99 - security->self() is a valid Bio::MAGE::Association::End
ok 100 - auditTrail set in new()
ok 101 - setAuditTrail returns correct value
ok 102 - getAuditTrail fetches correct value
ok 103 - addAuditTrail returns number of items in list
ok 104 - addAuditTrail adds correct value
ok 105 - setAuditTrail throws exception with non-array argument
ok 106 - setAuditTrail throws exception with bad argument array
ok 107 - addAuditTrail throws exception with no arguments
ok 108 - addAuditTrail throws exception with bad array
ok 109 - setAuditTrail accepts empty array ref
ok 110 - getAuditTrail throws exception with argument
ok 111 - setAuditTrail throws exception with no argument
ok 112 - setAuditTrail throws exception with too many argument
ok 113 - setAuditTrail accepts undef
ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 116 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 118 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 119 - propertySets set in new()
ok 120 - setPropertySets returns correct value
ok 121 - getPropertySets fetches correct value
ok 122 - addPropertySets returns number of items in list
ok 123 - addPropertySets adds correct value
ok 124 - setPropertySets throws exception with non-array argument
ok 125 - setPropertySets throws exception with bad argument array
ok 126 - addPropertySets throws exception with no arguments
ok 127 - addPropertySets throws exception with bad array
ok 128 - setPropertySets accepts empty array ref
ok 129 - getPropertySets throws exception with argument
ok 130 - setPropertySets throws exception with no argument
ok 131 - setPropertySets throws exception with too many argument
ok 132 - setPropertySets accepts undef
ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 135 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 137 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 138 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::Map'
ok 139 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMap' isa 'Bio::MAGE::BioEvent::Map'
ok
t/BioAssayMapping.t ..............
1..44
ok 1 - use Bio::MAGE::BioAssayData::BioAssayMapping;
ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMapping' isa 'Bio::MAGE::BioAssayData::BioAssayMapping'
ok 3 - package
ok 4 - class_name
ok 5 - propertySets set in new()
ok 6 - setPropertySets returns correct value
ok 7 - getPropertySets fetches correct value
ok 8 - addPropertySets returns number of items in list
ok 9 - addPropertySets adds correct value
ok 10 - setPropertySets throws exception with non-array argument
ok 11 - setPropertySets throws exception with bad argument array
ok 12 - addPropertySets throws exception with no arguments
ok 13 - addPropertySets throws exception with bad array
ok 14 - setPropertySets accepts empty array ref
ok 15 - getPropertySets throws exception with argument
ok 16 - setPropertySets throws exception with no argument
ok 17 - setPropertySets throws exception with too many argument
ok 18 - setPropertySets accepts undef
ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 21 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 23 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 24 - bioAssayMaps set in new()
ok 25 - setBioAssayMaps returns correct value
ok 26 - getBioAssayMaps fetches correct value
ok 27 - addBioAssayMaps returns number of items in list
ok 28 - addBioAssayMaps adds correct value
ok 29 - setBioAssayMaps throws exception with non-array argument
ok 30 - setBioAssayMaps throws exception with bad argument array
ok 31 - addBioAssayMaps throws exception with no arguments
ok 32 - addBioAssayMaps throws exception with bad array
ok 33 - setBioAssayMaps accepts empty array ref
ok 34 - getBioAssayMaps throws exception with argument
ok 35 - setBioAssayMaps throws exception with no argument
ok 36 - setBioAssayMaps throws exception with too many argument
ok 37 - setBioAssayMaps accepts undef
ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 40 - bioAssayMaps->other() is a valid Bio::MAGE::Association::End
ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 42 - bioAssayMaps->self() is a valid Bio::MAGE::Association::End
ok 43 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable'
ok 44 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMapping' isa 'Bio::MAGE::Extendable'
ok
t/BioAssayTreatment.t ............
1..135
ok 1 - use Bio::MAGE::BioAssay::BioAssayTreatment;
ok 2 - An object of class 'Bio::MAGE::BioAssay::BioAssayTreatment' isa 'Bio::MAGE::BioAssay::BioAssayTreatment'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - protocolApplications set in new()
ok 18 - setProtocolApplications returns correct value
ok 19 - getProtocolApplications fetches correct value
ok 20 - addProtocolApplications returns number of items in list
ok 21 - addProtocolApplications adds correct value
ok 22 - setProtocolApplications throws exception with non-array argument
ok 23 - setProtocolApplications throws exception with bad argument array
ok 24 - addProtocolApplications throws exception with no arguments
ok 25 - addProtocolApplications throws exception with bad array
ok 26 - setProtocolApplications accepts empty array ref
ok 27 - getProtocolApplications throws exception with argument
ok 28 - setProtocolApplications throws exception with no argument
ok 29 - setProtocolApplications throws exception with too many argument
ok 30 - setProtocolApplications accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End
ok 36 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay'
ok 37 - setTarget returns value
ok 38 - getTarget fetches correct value
ok 39 - setTarget throws exception with bad argument
ok 40 - getTarget throws exception with argument
ok 41 - setTarget throws exception with no argument
ok 42 - setTarget throws exception with too many argument
ok 43 - setTarget accepts undef
ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 46 - target->other() is a valid Bio::MAGE::Association::End
ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 48 - target->self() is a valid Bio::MAGE::Association::End
ok 49 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay'
ok 50 - setPhysicalBioAssay returns value
ok 51 - getPhysicalBioAssay fetches correct value
ok 52 - setPhysicalBioAssay throws exception with bad argument
ok 53 - getPhysicalBioAssay throws exception with argument
ok 54 - setPhysicalBioAssay throws exception with no argument
ok 55 - setPhysicalBioAssay throws exception with too many argument
ok 56 - setPhysicalBioAssay accepts undef
ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 59 - physicalBioAssay->other() is a valid Bio::MAGE::Association::End
ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 61 - physicalBioAssay->self() is a valid Bio::MAGE::Association::End
ok 62 - descriptions set in new()
ok 63 - setDescriptions returns correct value
ok 64 - getDescriptions fetches correct value
ok 65 - addDescriptions returns number of items in list
ok 66 - addDescriptions adds correct value
ok 67 - setDescriptions throws exception with non-array argument
ok 68 - setDescriptions throws exception with bad argument array
ok 69 - addDescriptions throws exception with no arguments
ok 70 - addDescriptions throws exception with bad array
ok 71 - setDescriptions accepts empty array ref
ok 72 - getDescriptions throws exception with argument
ok 73 - setDescriptions throws exception with no argument
ok 74 - setDescriptions throws exception with too many argument
ok 75 - setDescriptions accepts undef
ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 78 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 80 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 81 - auditTrail set in new()
ok 82 - setAuditTrail returns correct value
ok 83 - getAuditTrail fetches correct value
ok 84 - addAuditTrail returns number of items in list
ok 85 - addAuditTrail adds correct value
ok 86 - setAuditTrail throws exception with non-array argument
ok 87 - setAuditTrail throws exception with bad argument array
ok 88 - addAuditTrail throws exception with no arguments
ok 89 - addAuditTrail throws exception with bad array
ok 90 - setAuditTrail accepts empty array ref
ok 91 - getAuditTrail throws exception with argument
ok 92 - setAuditTrail throws exception with no argument
ok 93 - setAuditTrail throws exception with too many argument
ok 94 - setAuditTrail accepts undef
ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 100 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 101 - setSecurity returns value
ok 102 - getSecurity fetches correct value
ok 103 - setSecurity throws exception with bad argument
ok 104 - getSecurity throws exception with argument
ok 105 - setSecurity throws exception with no argument
ok 106 - setSecurity throws exception with too many argument
ok 107 - setSecurity accepts undef
ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 110 - security->other() is a valid Bio::MAGE::Association::End
ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 112 - security->self() is a valid Bio::MAGE::Association::End
ok 113 - propertySets set in new()
ok 114 - setPropertySets returns correct value
ok 115 - getPropertySets fetches correct value
ok 116 - addPropertySets returns number of items in list
ok 117 - addPropertySets adds correct value
ok 118 - setPropertySets throws exception with non-array argument
ok 119 - setPropertySets throws exception with bad argument array
ok 120 - addPropertySets throws exception with no arguments
ok 121 - addPropertySets throws exception with bad array
ok 122 - setPropertySets accepts empty array ref
ok 123 - getPropertySets throws exception with argument
ok 124 - setPropertySets throws exception with no argument
ok 125 - setPropertySets throws exception with too many argument
ok 126 - setPropertySets accepts undef
ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 132 - An object of class 'Bio::MAGE::BioAssay::ImageAcquisition' isa 'Bio::MAGE::BioAssay::ImageAcquisition'
ok 133 - An object of class 'Bio::MAGE::BioAssay::ImageAcquisition' isa 'Bio::MAGE::BioAssay::BioAssayTreatment'
ok 134 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent'
ok 135 - An object of class 'Bio::MAGE::BioAssay::BioAssayTreatment' isa 'Bio::MAGE::BioEvent::BioEvent'
ok
t/BioDataCube.t ..................
1..44
ok 1 - use Bio::MAGE::BioAssayData::BioDataCube;
ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioDataCube' isa 'Bio::MAGE::BioAssayData::BioDataCube'
ok 3 - package
ok 4 - class_name
ok 5 - cube new
ok 6 - cube getter/setter
ok 7 - cube getter throws exception with argument
ok 8 - cube setter throws exception with no argument
ok 9 - cube setter throws exception with too many argument
ok 10 - cube setter accepts undef
ok 11 - order new
ok 12 - order getter/setter
ok 13 - order getter throws exception with argument
ok 14 - order setter throws exception with no argument
ok 15 - order setter throws exception with too many argument
ok 16 - order setter accepts undef
ok 17 - order setter throws exception with bad argument
ok 18 - order accepts BDQ
ok 19 - order accepts BQD
ok 20 - order accepts DBQ
ok 21 - order accepts DQB
ok 22 - order accepts QBD
ok 23 - order accepts QDB
ok 24 - propertySets set in new()
ok 25 - setPropertySets returns correct value
ok 26 - getPropertySets fetches correct value
ok 27 - addPropertySets returns number of items in list
ok 28 - addPropertySets adds correct value
ok 29 - setPropertySets throws exception with non-array argument
ok 30 - setPropertySets throws exception with bad argument array
ok 31 - addPropertySets throws exception with no arguments
ok 32 - addPropertySets throws exception with bad array
ok 33 - setPropertySets accepts empty array ref
ok 34 - getPropertySets throws exception with argument
ok 35 - setPropertySets throws exception with no argument
ok 36 - setPropertySets throws exception with too many argument
ok 37 - setPropertySets accepts undef
ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 40 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 42 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 43 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues'
ok 44 - An object of class 'Bio::MAGE::BioAssayData::BioDataCube' isa 'Bio::MAGE::BioAssayData::BioDataValues'
ok
t/BioDataTuples.t ................
1..44
ok 1 - use Bio::MAGE::BioAssayData::BioDataTuples;
ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioDataTuples' isa 'Bio::MAGE::BioAssayData::BioDataTuples'
ok 3 - package
ok 4 - class_name
ok 5 - bioAssayTupleData set in new()
ok 6 - setBioAssayTupleData returns correct value
ok 7 - getBioAssayTupleData fetches correct value
ok 8 - addBioAssayTupleData returns number of items in list
ok 9 - addBioAssayTupleData adds correct value
ok 10 - setBioAssayTupleData throws exception with non-array argument
ok 11 - setBioAssayTupleData throws exception with bad argument array
ok 12 - addBioAssayTupleData throws exception with no arguments
ok 13 - addBioAssayTupleData throws exception with bad array
ok 14 - setBioAssayTupleData accepts empty array ref
ok 15 - getBioAssayTupleData throws exception with argument
ok 16 - setBioAssayTupleData throws exception with no argument
ok 17 - setBioAssayTupleData throws exception with too many argument
ok 18 - setBioAssayTupleData accepts undef
ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 21 - bioAssayTupleData->other() is a valid Bio::MAGE::Association::End
ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 23 - bioAssayTupleData->self() is a valid Bio::MAGE::Association::End
ok 24 - propertySets set in new()
ok 25 - setPropertySets returns correct value
ok 26 - getPropertySets fetches correct value
ok 27 - addPropertySets returns number of items in list
ok 28 - addPropertySets adds correct value
ok 29 - setPropertySets throws exception with non-array argument
ok 30 - setPropertySets throws exception with bad argument array
ok 31 - addPropertySets throws exception with no arguments
ok 32 - addPropertySets throws exception with bad array
ok 33 - setPropertySets accepts empty array ref
ok 34 - getPropertySets throws exception with argument
ok 35 - setPropertySets throws exception with no argument
ok 36 - setPropertySets throws exception with too many argument
ok 37 - setPropertySets accepts undef
ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 40 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 42 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 43 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues'
ok 44 - An object of class 'Bio::MAGE::BioAssayData::BioDataTuples' isa 'Bio::MAGE::BioAssayData::BioDataValues'
ok
t/BioDataValues.t ................
1..29
ok 1 - use Bio::MAGE::BioAssayData::BioDataValues;
ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues'
ok 3 - package
ok 4 - class_name
ok 5 - propertySets set in new()
ok 6 - setPropertySets returns correct value
ok 7 - getPropertySets fetches correct value
ok 8 - addPropertySets returns number of items in list
ok 9 - addPropertySets adds correct value
ok 10 - setPropertySets throws exception with non-array argument
ok 11 - setPropertySets throws exception with bad argument array
ok 12 - addPropertySets throws exception with no arguments
ok 13 - addPropertySets throws exception with bad array
ok 14 - setPropertySets accepts empty array ref
ok 15 - getPropertySets throws exception with argument
ok 16 - setPropertySets throws exception with no argument
ok 17 - setPropertySets throws exception with too many argument
ok 18 - setPropertySets accepts undef
ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 21 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 23 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 24 - An object of class 'Bio::MAGE::BioAssayData::BioDataCube' isa 'Bio::MAGE::BioAssayData::BioDataCube'
ok 25 - An object of class 'Bio::MAGE::BioAssayData::BioDataCube' isa 'Bio::MAGE::BioAssayData::BioDataValues'
ok 26 - An object of class 'Bio::MAGE::BioAssayData::BioDataTuples' isa 'Bio::MAGE::BioAssayData::BioDataTuples'
ok 27 - An object of class 'Bio::MAGE::BioAssayData::BioDataTuples' isa 'Bio::MAGE::BioAssayData::BioDataValues'
ok 28 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable'
ok 29 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::Extendable'
ok
t/BioEvent.t .....................
1..119
ok 1 - use Bio::MAGE::BioEvent::BioEvent;
ok 2 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - protocolApplications set in new()
ok 18 - setProtocolApplications returns correct value
ok 19 - getProtocolApplications fetches correct value
ok 20 - addProtocolApplications returns number of items in list
ok 21 - addProtocolApplications adds correct value
ok 22 - setProtocolApplications throws exception with non-array argument
ok 23 - setProtocolApplications throws exception with bad argument array
ok 24 - addProtocolApplications throws exception with no arguments
ok 25 - addProtocolApplications throws exception with bad array
ok 26 - setProtocolApplications accepts empty array ref
ok 27 - getProtocolApplications throws exception with argument
ok 28 - setProtocolApplications throws exception with no argument
ok 29 - setProtocolApplications throws exception with too many argument
ok 30 - setProtocolApplications accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End
ok 36 - descriptions set in new()
ok 37 - setDescriptions returns correct value
ok 38 - getDescriptions fetches correct value
ok 39 - addDescriptions returns number of items in list
ok 40 - addDescriptions adds correct value
ok 41 - setDescriptions throws exception with non-array argument
ok 42 - setDescriptions throws exception with bad argument array
ok 43 - addDescriptions throws exception with no arguments
ok 44 - addDescriptions throws exception with bad array
ok 45 - setDescriptions accepts empty array ref
ok 46 - getDescriptions throws exception with argument
ok 47 - setDescriptions throws exception with no argument
ok 48 - setDescriptions throws exception with too many argument
ok 49 - setDescriptions accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 56 - setSecurity returns value
ok 57 - getSecurity fetches correct value
ok 58 - setSecurity throws exception with bad argument
ok 59 - getSecurity throws exception with argument
ok 60 - setSecurity throws exception with no argument
ok 61 - setSecurity throws exception with too many argument
ok 62 - setSecurity accepts undef
ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 65 - security->other() is a valid Bio::MAGE::Association::End
ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 67 - security->self() is a valid Bio::MAGE::Association::End
ok 68 - auditTrail set in new()
ok 69 - setAuditTrail returns correct value
ok 70 - getAuditTrail fetches correct value
ok 71 - addAuditTrail returns number of items in list
ok 72 - addAuditTrail adds correct value
ok 73 - setAuditTrail throws exception with non-array argument
ok 74 - setAuditTrail throws exception with bad argument array
ok 75 - addAuditTrail throws exception with no arguments
ok 76 - addAuditTrail throws exception with bad array
ok 77 - setAuditTrail accepts empty array ref
ok 78 - getAuditTrail throws exception with argument
ok 79 - setAuditTrail throws exception with no argument
ok 80 - setAuditTrail throws exception with too many argument
ok 81 - setAuditTrail accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 87 - propertySets set in new()
ok 88 - setPropertySets returns correct value
ok 89 - getPropertySets fetches correct value
ok 90 - addPropertySets returns number of items in list
ok 91 - addPropertySets adds correct value
ok 92 - setPropertySets throws exception with non-array argument
ok 93 - setPropertySets throws exception with bad argument array
ok 94 - addPropertySets throws exception with no arguments
ok 95 - addPropertySets throws exception with bad array
ok 96 - setPropertySets accepts empty array ref
ok 97 - getPropertySets throws exception with argument
ok 98 - setPropertySets throws exception with no argument
ok 99 - setPropertySets throws exception with too many argument
ok 100 - setPropertySets accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 106 - An object of class 'Bio::MAGE::BioAssay::BioAssayTreatment' isa 'Bio::MAGE::BioAssay::BioAssayTreatment'
ok 107 - An object of class 'Bio::MAGE::BioAssay::BioAssayTreatment' isa 'Bio::MAGE::BioEvent::BioEvent'
ok 108 - An object of class 'Bio::MAGE::BioAssay::BioAssayCreation' isa 'Bio::MAGE::BioAssay::BioAssayCreation'
ok 109 - An object of class 'Bio::MAGE::BioAssay::BioAssayCreation' isa 'Bio::MAGE::BioEvent::BioEvent'
ok 110 - An object of class 'Bio::MAGE::BioAssay::FeatureExtraction' isa 'Bio::MAGE::BioAssay::FeatureExtraction'
ok 111 - An object of class 'Bio::MAGE::BioAssay::FeatureExtraction' isa 'Bio::MAGE::BioEvent::BioEvent'
ok 112 - An object of class 'Bio::MAGE::BioAssayData::Transformation' isa 'Bio::MAGE::BioAssayData::Transformation'
ok 113 - An object of class 'Bio::MAGE::BioAssayData::Transformation' isa 'Bio::MAGE::BioEvent::BioEvent'
ok 114 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::Map'
ok 115 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::BioEvent'
ok 116 - An object of class 'Bio::MAGE::BioMaterial::Treatment' isa 'Bio::MAGE::BioMaterial::Treatment'
ok 117 - An object of class 'Bio::MAGE::BioMaterial::Treatment' isa 'Bio::MAGE::BioEvent::BioEvent'
ok 118 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 119 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::Identifiable'
ok
t/BioEvent_package.t .............
1..7
ok 1 - use Bio::MAGE::BioEvent;
ok 2 - number of subclasses
ok 3 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent'
ok 4 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::Map'
ok 5 - An object of class 'Bio::MAGE::BioEvent' isa 'Bio::MAGE::BioEvent'
ok 6 - tagname
ok 7 - xml_lists
ok
t/BioMaterial.t ..................
1..164
ok 1 - use Bio::MAGE::BioMaterial::BioMaterial;
ok 2 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - auditTrail set in new()
ok 18 - setAuditTrail returns correct value
ok 19 - getAuditTrail fetches correct value
ok 20 - addAuditTrail returns number of items in list
ok 21 - addAuditTrail adds correct value
ok 22 - setAuditTrail throws exception with non-array argument
ok 23 - setAuditTrail throws exception with bad argument array
ok 24 - addAuditTrail throws exception with no arguments
ok 25 - addAuditTrail throws exception with bad array
ok 26 - setAuditTrail accepts empty array ref
ok 27 - getAuditTrail throws exception with argument
ok 28 - setAuditTrail throws exception with no argument
ok 29 - setAuditTrail throws exception with too many argument
ok 30 - setAuditTrail accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 36 - propertySets set in new()
ok 37 - setPropertySets returns correct value
ok 38 - getPropertySets fetches correct value
ok 39 - addPropertySets returns number of items in list
ok 40 - addPropertySets adds correct value
ok 41 - setPropertySets throws exception with non-array argument
ok 42 - setPropertySets throws exception with bad argument array
ok 43 - addPropertySets throws exception with no arguments
ok 44 - addPropertySets throws exception with bad array
ok 45 - setPropertySets accepts empty array ref
ok 46 - getPropertySets throws exception with argument
ok 47 - setPropertySets throws exception with no argument
ok 48 - setPropertySets throws exception with too many argument
ok 49 - setPropertySets accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 55 - qualityControlStatistics set in new()
ok 56 - setQualityControlStatistics returns correct value
ok 57 - getQualityControlStatistics fetches correct value
ok 58 - addQualityControlStatistics returns number of items in list
ok 59 - addQualityControlStatistics adds correct value
ok 60 - setQualityControlStatistics throws exception with non-array argument
ok 61 - setQualityControlStatistics throws exception with bad argument array
ok 62 - addQualityControlStatistics throws exception with no arguments
ok 63 - addQualityControlStatistics throws exception with bad array
ok 64 - setQualityControlStatistics accepts empty array ref
ok 65 - getQualityControlStatistics throws exception with argument
ok 66 - setQualityControlStatistics throws exception with no argument
ok 67 - setQualityControlStatistics throws exception with too many argument
ok 68 - setQualityControlStatistics accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - qualityControlStatistics->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - qualityControlStatistics->self() is a valid Bio::MAGE::Association::End
ok 74 - descriptions set in new()
ok 75 - setDescriptions returns correct value
ok 76 - getDescriptions fetches correct value
ok 77 - addDescriptions returns number of items in list
ok 78 - addDescriptions adds correct value
ok 79 - setDescriptions throws exception with non-array argument
ok 80 - setDescriptions throws exception with bad argument array
ok 81 - addDescriptions throws exception with no arguments
ok 82 - addDescriptions throws exception with bad array
ok 83 - setDescriptions accepts empty array ref
ok 84 - getDescriptions throws exception with argument
ok 85 - setDescriptions throws exception with no argument
ok 86 - setDescriptions throws exception with too many argument
ok 87 - setDescriptions accepts undef
ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 90 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 92 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 93 - characteristics set in new()
ok 94 - setCharacteristics returns correct value
ok 95 - getCharacteristics fetches correct value
ok 96 - addCharacteristics returns number of items in list
ok 97 - addCharacteristics adds correct value
ok 98 - setCharacteristics throws exception with non-array argument
ok 99 - setCharacteristics throws exception with bad argument array
ok 100 - addCharacteristics throws exception with no arguments
ok 101 - addCharacteristics throws exception with bad array
ok 102 - setCharacteristics accepts empty array ref
ok 103 - getCharacteristics throws exception with argument
ok 104 - setCharacteristics throws exception with no argument
ok 105 - setCharacteristics throws exception with too many argument
ok 106 - setCharacteristics accepts undef
ok 107 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 108 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 109 - characteristics->other() is a valid Bio::MAGE::Association::End
ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 111 - characteristics->self() is a valid Bio::MAGE::Association::End
ok 112 - treatments set in new()
ok 113 - setTreatments returns correct value
ok 114 - getTreatments fetches correct value
ok 115 - addTreatments returns number of items in list
ok 116 - addTreatments adds correct value
ok 117 - setTreatments throws exception with non-array argument
ok 118 - setTreatments throws exception with bad argument array
ok 119 - addTreatments throws exception with no arguments
ok 120 - addTreatments throws exception with bad array
ok 121 - setTreatments accepts empty array ref
ok 122 - getTreatments throws exception with argument
ok 123 - setTreatments throws exception with no argument
ok 124 - setTreatments throws exception with too many argument
ok 125 - setTreatments accepts undef
ok 126 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 127 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 128 - treatments->other() is a valid Bio::MAGE::Association::End
ok 129 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 130 - treatments->self() is a valid Bio::MAGE::Association::End
ok 131 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 132 - setSecurity returns value
ok 133 - getSecurity fetches correct value
ok 134 - setSecurity throws exception with bad argument
ok 135 - getSecurity throws exception with argument
ok 136 - setSecurity throws exception with no argument
ok 137 - setSecurity throws exception with too many argument
ok 138 - setSecurity accepts undef
ok 139 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 141 - security->other() is a valid Bio::MAGE::Association::End
ok 142 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 143 - security->self() is a valid Bio::MAGE::Association::End
ok 144 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 145 - setMaterialType returns value
ok 146 - getMaterialType fetches correct value
ok 147 - setMaterialType throws exception with bad argument
ok 148 - getMaterialType throws exception with argument
ok 149 - setMaterialType throws exception with no argument
ok 150 - setMaterialType throws exception with too many argument
ok 151 - setMaterialType accepts undef
ok 152 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 154 - materialType->other() is a valid Bio::MAGE::Association::End
ok 155 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 156 - materialType->self() is a valid Bio::MAGE::Association::End
ok 157 - An object of class 'Bio::MAGE::BioMaterial::BioSource' isa 'Bio::MAGE::BioMaterial::BioSource'
ok 158 - An object of class 'Bio::MAGE::BioMaterial::BioSource' isa 'Bio::MAGE::BioMaterial::BioMaterial'
ok 159 - An object of class 'Bio::MAGE::BioMaterial::LabeledExtract' isa 'Bio::MAGE::BioMaterial::LabeledExtract'
ok 160 - An object of class 'Bio::MAGE::BioMaterial::LabeledExtract' isa 'Bio::MAGE::BioMaterial::BioMaterial'
ok 161 - An object of class 'Bio::MAGE::BioMaterial::BioSample' isa 'Bio::MAGE::BioMaterial::BioSample'
ok 162 - An object of class 'Bio::MAGE::BioMaterial::BioSample' isa 'Bio::MAGE::BioMaterial::BioMaterial'
ok 163 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 164 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::Identifiable'
ok
t/BioMaterial_package.t ..........
1..25
ok 1 - use Bio::MAGE::BioMaterial;
ok 2 - number of subclasses
ok 3 - An object of class 'Bio::MAGE::BioMaterial::BioSource' isa 'Bio::MAGE::BioMaterial::BioSource'
ok 4 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial'
ok 5 - An object of class 'Bio::MAGE::BioMaterial::LabeledExtract' isa 'Bio::MAGE::BioMaterial::LabeledExtract'
ok 6 - An object of class 'Bio::MAGE::BioMaterial::BioSample' isa 'Bio::MAGE::BioMaterial::BioSample'
ok 7 - An object of class 'Bio::MAGE::BioMaterial::Compound' isa 'Bio::MAGE::BioMaterial::Compound'
ok 8 - An object of class 'Bio::MAGE::BioMaterial::CompoundMeasurement' isa 'Bio::MAGE::BioMaterial::CompoundMeasurement'
ok 9 - An object of class 'Bio::MAGE::BioMaterial::BioMaterialMeasurement' isa 'Bio::MAGE::BioMaterial::BioMaterialMeasurement'
ok 10 - An object of class 'Bio::MAGE::BioMaterial::Treatment' isa 'Bio::MAGE::BioMaterial::Treatment'
ok 11 - An object of class 'Bio::MAGE::BioMaterial' isa 'Bio::MAGE::BioMaterial'
ok 12 - tagname
ok 13 - xml_lists
ok 14 - A reference of type 'ARRAY' isa 'ARRAY'
ok 15 - compound_list empty
ok 16 - A reference of type 'ARRAY' isa 'ARRAY'
ok 17 - getCompound_list empty
ok 18 - A reference of type 'ARRAY' isa 'ARRAY'
ok 19 - getCompound_list not empty
ok 20 - A reference of type 'ARRAY' isa 'ARRAY'
ok 21 - biomaterial_list empty
ok 22 - A reference of type 'ARRAY' isa 'ARRAY'
ok 23 - getBioMaterial_list empty
ok 24 - A reference of type 'ARRAY' isa 'ARRAY'
ok 25 - getBioMaterial_list not empty
ok
t/BioMaterialMeasurement.t .......
1..51
ok 1 - use Bio::MAGE::BioMaterial::BioMaterialMeasurement;
ok 2 - An object of class 'Bio::MAGE::BioMaterial::BioMaterialMeasurement' isa 'Bio::MAGE::BioMaterial::BioMaterialMeasurement'
ok 3 - package
ok 4 - class_name
ok 5 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial'
ok 6 - setBioMaterial returns value
ok 7 - getBioMaterial fetches correct value
ok 8 - setBioMaterial throws exception with bad argument
ok 9 - getBioMaterial throws exception with argument
ok 10 - setBioMaterial throws exception with no argument
ok 11 - setBioMaterial throws exception with too many argument
ok 12 - setBioMaterial accepts undef
ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 15 - bioMaterial->other() is a valid Bio::MAGE::Association::End
ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 17 - bioMaterial->self() is a valid Bio::MAGE::Association::End
ok 18 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement'
ok 19 - setMeasurement returns value
ok 20 - getMeasurement fetches correct value
ok 21 - setMeasurement throws exception with bad argument
ok 22 - getMeasurement throws exception with argument
ok 23 - setMeasurement throws exception with no argument
ok 24 - setMeasurement throws exception with too many argument
ok 25 - setMeasurement accepts undef
ok 26 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 27 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 28 - measurement->other() is a valid Bio::MAGE::Association::End
ok 29 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 30 - measurement->self() is a valid Bio::MAGE::Association::End
ok 31 - propertySets set in new()
ok 32 - setPropertySets returns correct value
ok 33 - getPropertySets fetches correct value
ok 34 - addPropertySets returns number of items in list
ok 35 - addPropertySets adds correct value
ok 36 - setPropertySets throws exception with non-array argument
ok 37 - setPropertySets throws exception with bad argument array
ok 38 - addPropertySets throws exception with no arguments
ok 39 - addPropertySets throws exception with bad array
ok 40 - setPropertySets accepts empty array ref
ok 41 - getPropertySets throws exception with argument
ok 42 - setPropertySets throws exception with no argument
ok 43 - setPropertySets throws exception with too many argument
ok 44 - setPropertySets accepts undef
ok 45 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 47 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 48 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 49 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 50 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable'
ok 51 - An object of class 'Bio::MAGE::BioMaterial::BioMaterialMeasurement' isa 'Bio::MAGE::Extendable'
ok
t/BioSample.t ....................
1..171
ok 1 - use Bio::MAGE::BioMaterial::BioSample;
ok 2 - An object of class 'Bio::MAGE::BioMaterial::BioSample' isa 'Bio::MAGE::BioMaterial::BioSample'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - auditTrail set in new()
ok 18 - setAuditTrail returns correct value
ok 19 - getAuditTrail fetches correct value
ok 20 - addAuditTrail returns number of items in list
ok 21 - addAuditTrail adds correct value
ok 22 - setAuditTrail throws exception with non-array argument
ok 23 - setAuditTrail throws exception with bad argument array
ok 24 - addAuditTrail throws exception with no arguments
ok 25 - addAuditTrail throws exception with bad array
ok 26 - setAuditTrail accepts empty array ref
ok 27 - getAuditTrail throws exception with argument
ok 28 - setAuditTrail throws exception with no argument
ok 29 - setAuditTrail throws exception with too many argument
ok 30 - setAuditTrail accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 36 - propertySets set in new()
ok 37 - setPropertySets returns correct value
ok 38 - getPropertySets fetches correct value
ok 39 - addPropertySets returns number of items in list
ok 40 - addPropertySets adds correct value
ok 41 - setPropertySets throws exception with non-array argument
ok 42 - setPropertySets throws exception with bad argument array
ok 43 - addPropertySets throws exception with no arguments
ok 44 - addPropertySets throws exception with bad array
ok 45 - setPropertySets accepts empty array ref
ok 46 - getPropertySets throws exception with argument
ok 47 - setPropertySets throws exception with no argument
ok 48 - setPropertySets throws exception with too many argument
ok 49 - setPropertySets accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 55 - qualityControlStatistics set in new()
ok 56 - setQualityControlStatistics returns correct value
ok 57 - getQualityControlStatistics fetches correct value
ok 58 - addQualityControlStatistics returns number of items in list
ok 59 - addQualityControlStatistics adds correct value
ok 60 - setQualityControlStatistics throws exception with non-array argument
ok 61 - setQualityControlStatistics throws exception with bad argument array
ok 62 - addQualityControlStatistics throws exception with no arguments
ok 63 - addQualityControlStatistics throws exception with bad array
ok 64 - setQualityControlStatistics accepts empty array ref
ok 65 - getQualityControlStatistics throws exception with argument
ok 66 - setQualityControlStatistics throws exception with no argument
ok 67 - setQualityControlStatistics throws exception with too many argument
ok 68 - setQualityControlStatistics accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - qualityControlStatistics->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - qualityControlStatistics->self() is a valid Bio::MAGE::Association::End
ok 74 - descriptions set in new()
ok 75 - setDescriptions returns correct value
ok 76 - getDescriptions fetches correct value
ok 77 - addDescriptions returns number of items in list
ok 78 - addDescriptions adds correct value
ok 79 - setDescriptions throws exception with non-array argument
ok 80 - setDescriptions throws exception with bad argument array
ok 81 - addDescriptions throws exception with no arguments
ok 82 - addDescriptions throws exception with bad array
ok 83 - setDescriptions accepts empty array ref
ok 84 - getDescriptions throws exception with argument
ok 85 - setDescriptions throws exception with no argument
ok 86 - setDescriptions throws exception with too many argument
ok 87 - setDescriptions accepts undef
ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 90 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 92 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 93 - characteristics set in new()
ok 94 - setCharacteristics returns correct value
ok 95 - getCharacteristics fetches correct value
ok 96 - addCharacteristics returns number of items in list
ok 97 - addCharacteristics adds correct value
ok 98 - setCharacteristics throws exception with non-array argument
ok 99 - setCharacteristics throws exception with bad argument array
ok 100 - addCharacteristics throws exception with no arguments
ok 101 - addCharacteristics throws exception with bad array
ok 102 - setCharacteristics accepts empty array ref
ok 103 - getCharacteristics throws exception with argument
ok 104 - setCharacteristics throws exception with no argument
ok 105 - setCharacteristics throws exception with too many argument
ok 106 - setCharacteristics accepts undef
ok 107 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 108 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 109 - characteristics->other() is a valid Bio::MAGE::Association::End
ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 111 - characteristics->self() is a valid Bio::MAGE::Association::End
ok 112 - treatments set in new()
ok 113 - setTreatments returns correct value
ok 114 - getTreatments fetches correct value
ok 115 - addTreatments returns number of items in list
ok 116 - addTreatments adds correct value
ok 117 - setTreatments throws exception with non-array argument
ok 118 - setTreatments throws exception with bad argument array
ok 119 - addTreatments throws exception with no arguments
ok 120 - addTreatments throws exception with bad array
ok 121 - setTreatments accepts empty array ref
ok 122 - getTreatments throws exception with argument
ok 123 - setTreatments throws exception with no argument
ok 124 - setTreatments throws exception with too many argument
ok 125 - setTreatments accepts undef
ok 126 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 127 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 128 - treatments->other() is a valid Bio::MAGE::Association::End
ok 129 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 130 - treatments->self() is a valid Bio::MAGE::Association::End
ok 131 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 132 - setSecurity returns value
ok 133 - getSecurity fetches correct value
ok 134 - setSecurity throws exception with bad argument
ok 135 - getSecurity throws exception with argument
ok 136 - setSecurity throws exception with no argument
ok 137 - setSecurity throws exception with too many argument
ok 138 - setSecurity accepts undef
ok 139 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 141 - security->other() is a valid Bio::MAGE::Association::End
ok 142 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 143 - security->self() is a valid Bio::MAGE::Association::End
ok 144 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 145 - setType returns value
ok 146 - getType fetches correct value
ok 147 - setType throws exception with bad argument
ok 148 - getType throws exception with argument
ok 149 - setType throws exception with no argument
ok 150 - setType throws exception with too many argument
ok 151 - setType accepts undef
ok 152 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 154 - type->other() is a valid Bio::MAGE::Association::End
ok 155 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 156 - type->self() is a valid Bio::MAGE::Association::End
ok 157 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 158 - setMaterialType returns value
ok 159 - getMaterialType fetches correct value
ok 160 - setMaterialType throws exception with bad argument
ok 161 - getMaterialType throws exception with argument
ok 162 - setMaterialType throws exception with no argument
ok 163 - setMaterialType throws exception with too many argument
ok 164 - setMaterialType accepts undef
ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 167 - materialType->other() is a valid Bio::MAGE::Association::End
ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 169 - materialType->self() is a valid Bio::MAGE::Association::End
ok 170 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial'
ok 171 - An object of class 'Bio::MAGE::BioMaterial::BioSample' isa 'Bio::MAGE::BioMaterial::BioMaterial'
ok
t/BioSequence.t ..................
1..208
ok 1 - use Bio::MAGE::BioSequence::BioSequence;
ok 2 - An object of class 'Bio::MAGE::BioSequence::BioSequence' isa 'Bio::MAGE::BioSequence::BioSequence'
ok 3 - package
ok 4 - class_name
ok 5 - length new
ok 6 - length getter/setter
ok 7 - length getter throws exception with argument
ok 8 - length setter throws exception with no argument
ok 9 - length setter throws exception with too many argument
ok 10 - length setter accepts undef
ok 11 - isApproximateLength new
ok 12 - isApproximateLength getter/setter
ok 13 - isApproximateLength getter throws exception with argument
ok 14 - isApproximateLength setter throws exception with no argument
ok 15 - isApproximateLength setter throws exception with too many argument
ok 16 - isApproximateLength setter accepts undef
ok 17 - identifier new
ok 18 - identifier getter/setter
ok 19 - identifier getter throws exception with argument
ok 20 - identifier setter throws exception with no argument
ok 21 - identifier setter throws exception with too many argument
ok 22 - identifier setter accepts undef
ok 23 - sequence new
ok 24 - sequence getter/setter
ok 25 - sequence getter throws exception with argument
ok 26 - sequence setter throws exception with no argument
ok 27 - sequence setter throws exception with too many argument
ok 28 - sequence setter accepts undef
ok 29 - name new
ok 30 - name getter/setter
ok 31 - name getter throws exception with argument
ok 32 - name setter throws exception with no argument
ok 33 - name setter throws exception with too many argument
ok 34 - name setter accepts undef
ok 35 - isCircular new
ok 36 - isCircular getter/setter
ok 37 - isCircular getter throws exception with argument
ok 38 - isCircular setter throws exception with no argument
ok 39 - isCircular setter throws exception with too many argument
ok 40 - isCircular setter accepts undef
ok 41 - sequenceDatabases set in new()
ok 42 - setSequenceDatabases returns correct value
ok 43 - getSequenceDatabases fetches correct value
ok 44 - addSequenceDatabases returns number of items in list
ok 45 - addSequenceDatabases adds correct value
ok 46 - setSequenceDatabases throws exception with non-array argument
ok 47 - setSequenceDatabases throws exception with bad argument array
ok 48 - addSequenceDatabases throws exception with no arguments
ok 49 - addSequenceDatabases throws exception with bad array
ok 50 - setSequenceDatabases accepts empty array ref
ok 51 - getSequenceDatabases throws exception with argument
ok 52 - setSequenceDatabases throws exception with no argument
ok 53 - setSequenceDatabases throws exception with too many argument
ok 54 - setSequenceDatabases accepts undef
ok 55 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 56 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 57 - sequenceDatabases->other() is a valid Bio::MAGE::Association::End
ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 59 - sequenceDatabases->self() is a valid Bio::MAGE::Association::End
ok 60 - auditTrail set in new()
ok 61 - setAuditTrail returns correct value
ok 62 - getAuditTrail fetches correct value
ok 63 - addAuditTrail returns number of items in list
ok 64 - addAuditTrail adds correct value
ok 65 - setAuditTrail throws exception with non-array argument
ok 66 - setAuditTrail throws exception with bad argument array
ok 67 - addAuditTrail throws exception with no arguments
ok 68 - addAuditTrail throws exception with bad array
ok 69 - setAuditTrail accepts empty array ref
ok 70 - getAuditTrail throws exception with argument
ok 71 - setAuditTrail throws exception with no argument
ok 72 - setAuditTrail throws exception with too many argument
ok 73 - setAuditTrail accepts undef
ok 74 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 75 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 76 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 78 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 79 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 80 - setPolymerType returns value
ok 81 - getPolymerType fetches correct value
ok 82 - setPolymerType throws exception with bad argument
ok 83 - getPolymerType throws exception with argument
ok 84 - setPolymerType throws exception with no argument
ok 85 - setPolymerType throws exception with too many argument
ok 86 - setPolymerType accepts undef
ok 87 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 88 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 89 - polymerType->other() is a valid Bio::MAGE::Association::End
ok 90 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 91 - polymerType->self() is a valid Bio::MAGE::Association::End
ok 92 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 93 - setSpecies returns value
ok 94 - getSpecies fetches correct value
ok 95 - setSpecies throws exception with bad argument
ok 96 - getSpecies throws exception with argument
ok 97 - setSpecies throws exception with no argument
ok 98 - setSpecies throws exception with too many argument
ok 99 - setSpecies accepts undef
ok 100 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 101 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 102 - species->other() is a valid Bio::MAGE::Association::End
ok 103 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 104 - species->self() is a valid Bio::MAGE::Association::End
ok 105 - propertySets set in new()
ok 106 - setPropertySets returns correct value
ok 107 - getPropertySets fetches correct value
ok 108 - addPropertySets returns number of items in list
ok 109 - addPropertySets adds correct value
ok 110 - setPropertySets throws exception with non-array argument
ok 111 - setPropertySets throws exception with bad argument array
ok 112 - addPropertySets throws exception with no arguments
ok 113 - addPropertySets throws exception with bad array
ok 114 - setPropertySets accepts empty array ref
ok 115 - getPropertySets throws exception with argument
ok 116 - setPropertySets throws exception with no argument
ok 117 - setPropertySets throws exception with too many argument
ok 118 - setPropertySets accepts undef
ok 119 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 120 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 121 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 122 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 123 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 124 - ontologyEntries set in new()
ok 125 - setOntologyEntries returns correct value
ok 126 - getOntologyEntries fetches correct value
ok 127 - addOntologyEntries returns number of items in list
ok 128 - addOntologyEntries adds correct value
ok 129 - setOntologyEntries throws exception with non-array argument
ok 130 - setOntologyEntries throws exception with bad argument array
ok 131 - addOntologyEntries throws exception with no arguments
ok 132 - addOntologyEntries throws exception with bad array
ok 133 - setOntologyEntries accepts empty array ref
ok 134 - getOntologyEntries throws exception with argument
ok 135 - setOntologyEntries throws exception with no argument
ok 136 - setOntologyEntries throws exception with too many argument
ok 137 - setOntologyEntries accepts undef
ok 138 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 139 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 140 - ontologyEntries->other() is a valid Bio::MAGE::Association::End
ok 141 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 142 - ontologyEntries->self() is a valid Bio::MAGE::Association::End
ok 143 - descriptions set in new()
ok 144 - setDescriptions returns correct value
ok 145 - getDescriptions fetches correct value
ok 146 - addDescriptions returns number of items in list
ok 147 - addDescriptions adds correct value
ok 148 - setDescriptions throws exception with non-array argument
ok 149 - setDescriptions throws exception with bad argument array
ok 150 - addDescriptions throws exception with no arguments
ok 151 - addDescriptions throws exception with bad array
ok 152 - setDescriptions accepts empty array ref
ok 153 - getDescriptions throws exception with argument
ok 154 - setDescriptions throws exception with no argument
ok 155 - setDescriptions throws exception with too many argument
ok 156 - setDescriptions accepts undef
ok 157 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 158 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 159 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 161 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 162 - seqFeatures set in new()
ok 163 - setSeqFeatures returns correct value
ok 164 - getSeqFeatures fetches correct value
ok 165 - addSeqFeatures returns number of items in list
ok 166 - addSeqFeatures adds correct value
ok 167 - setSeqFeatures throws exception with non-array argument
ok 168 - setSeqFeatures throws exception with bad argument array
ok 169 - addSeqFeatures throws exception with no arguments
ok 170 - addSeqFeatures throws exception with bad array
ok 171 - setSeqFeatures accepts empty array ref
ok 172 - getSeqFeatures throws exception with argument
ok 173 - setSeqFeatures throws exception with no argument
ok 174 - setSeqFeatures throws exception with too many argument
ok 175 - setSeqFeatures accepts undef
ok 176 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 177 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 178 - seqFeatures->other() is a valid Bio::MAGE::Association::End
ok 179 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 180 - seqFeatures->self() is a valid Bio::MAGE::Association::End
ok 181 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 182 - setSecurity returns value
ok 183 - getSecurity fetches correct value
ok 184 - setSecurity throws exception with bad argument
ok 185 - getSecurity throws exception with argument
ok 186 - setSecurity throws exception with no argument
ok 187 - setSecurity throws exception with too many argument
ok 188 - setSecurity accepts undef
ok 189 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 190 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 191 - security->other() is a valid Bio::MAGE::Association::End
ok 192 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 193 - security->self() is a valid Bio::MAGE::Association::End
ok 194 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 195 - setType returns value
ok 196 - getType fetches correct value
ok 197 - setType throws exception with bad argument
ok 198 - getType throws exception with argument
ok 199 - setType throws exception with no argument
ok 200 - setType throws exception with too many argument
ok 201 - setType accepts undef
ok 202 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 203 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 204 - type->other() is a valid Bio::MAGE::Association::End
ok 205 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 206 - type->self() is a valid Bio::MAGE::Association::End
ok 207 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 208 - An object of class 'Bio::MAGE::BioSequence::BioSequence' isa 'Bio::MAGE::Identifiable'
ok
t/BioSequence_package.t ..........
1..15
ok 1 - use Bio::MAGE::BioSequence;
ok 2 - number of subclasses
ok 3 - An object of class 'Bio::MAGE::BioSequence::SeqFeature' isa 'Bio::MAGE::BioSequence::SeqFeature'
ok 4 - An object of class 'Bio::MAGE::BioSequence::SeqFeatureLocation' isa 'Bio::MAGE::BioSequence::SeqFeatureLocation'
ok 5 - An object of class 'Bio::MAGE::BioSequence::BioSequence' isa 'Bio::MAGE::BioSequence::BioSequence'
ok 6 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::BioSequence::SequencePosition'
ok 7 - An object of class 'Bio::MAGE::BioSequence' isa 'Bio::MAGE::BioSequence'
ok 8 - tagname
ok 9 - xml_lists
ok 10 - A reference of type 'ARRAY' isa 'ARRAY'
ok 11 - biosequence_list empty
ok 12 - A reference of type 'ARRAY' isa 'ARRAY'
ok 13 - getBioSequence_list empty
ok 14 - A reference of type 'ARRAY' isa 'ARRAY'
ok 15 - getBioSequence_list not empty
ok
t/BioSource.t ....................
1..177
ok 1 - use Bio::MAGE::BioMaterial::BioSource;
ok 2 - An object of class 'Bio::MAGE::BioMaterial::BioSource' isa 'Bio::MAGE::BioMaterial::BioSource'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - sourceContact set in new()
ok 18 - setSourceContact returns correct value
ok 19 - getSourceContact fetches correct value
ok 20 - addSourceContact returns number of items in list
ok 21 - addSourceContact adds correct value
ok 22 - setSourceContact throws exception with non-array argument
ok 23 - setSourceContact throws exception with bad argument array
ok 24 - addSourceContact throws exception with no arguments
ok 25 - addSourceContact throws exception with bad array
ok 26 - setSourceContact accepts empty array ref
ok 27 - getSourceContact throws exception with argument
ok 28 - setSourceContact throws exception with no argument
ok 29 - setSourceContact throws exception with too many argument
ok 30 - setSourceContact accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - sourceContact->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - sourceContact->self() is a valid Bio::MAGE::Association::End
ok 36 - auditTrail set in new()
ok 37 - setAuditTrail returns correct value
ok 38 - getAuditTrail fetches correct value
ok 39 - addAuditTrail returns number of items in list
ok 40 - addAuditTrail adds correct value
ok 41 - setAuditTrail throws exception with non-array argument
ok 42 - setAuditTrail throws exception with bad argument array
ok 43 - addAuditTrail throws exception with no arguments
ok 44 - addAuditTrail throws exception with bad array
ok 45 - setAuditTrail accepts empty array ref
ok 46 - getAuditTrail throws exception with argument
ok 47 - setAuditTrail throws exception with no argument
ok 48 - setAuditTrail throws exception with too many argument
ok 49 - setAuditTrail accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 55 - propertySets set in new()
ok 56 - setPropertySets returns correct value
ok 57 - getPropertySets fetches correct value
ok 58 - addPropertySets returns number of items in list
ok 59 - addPropertySets adds correct value
ok 60 - setPropertySets throws exception with non-array argument
ok 61 - setPropertySets throws exception with bad argument array
ok 62 - addPropertySets throws exception with no arguments
ok 63 - addPropertySets throws exception with bad array
ok 64 - setPropertySets accepts empty array ref
ok 65 - getPropertySets throws exception with argument
ok 66 - setPropertySets throws exception with no argument
ok 67 - setPropertySets throws exception with too many argument
ok 68 - setPropertySets accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 74 - qualityControlStatistics set in new()
ok 75 - setQualityControlStatistics returns correct value
ok 76 - getQualityControlStatistics fetches correct value
ok 77 - addQualityControlStatistics returns number of items in list
ok 78 - addQualityControlStatistics adds correct value
ok 79 - setQualityControlStatistics throws exception with non-array argument
ok 80 - setQualityControlStatistics throws exception with bad argument array
ok 81 - addQualityControlStatistics throws exception with no arguments
ok 82 - addQualityControlStatistics throws exception with bad array
ok 83 - setQualityControlStatistics accepts empty array ref
ok 84 - getQualityControlStatistics throws exception with argument
ok 85 - setQualityControlStatistics throws exception with no argument
ok 86 - setQualityControlStatistics throws exception with too many argument
ok 87 - setQualityControlStatistics accepts undef
ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 90 - qualityControlStatistics->other() is a valid Bio::MAGE::Association::End
ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 92 - qualityControlStatistics->self() is a valid Bio::MAGE::Association::End
ok 93 - descriptions set in new()
ok 94 - setDescriptions returns correct value
ok 95 - getDescriptions fetches correct value
ok 96 - addDescriptions returns number of items in list
ok 97 - addDescriptions adds correct value
ok 98 - setDescriptions throws exception with non-array argument
ok 99 - setDescriptions throws exception with bad argument array
ok 100 - addDescriptions throws exception with no arguments
ok 101 - addDescriptions throws exception with bad array
ok 102 - setDescriptions accepts empty array ref
ok 103 - getDescriptions throws exception with argument
ok 104 - setDescriptions throws exception with no argument
ok 105 - setDescriptions throws exception with too many argument
ok 106 - setDescriptions accepts undef
ok 107 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 108 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 109 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 111 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 112 - characteristics set in new()
ok 113 - setCharacteristics returns correct value
ok 114 - getCharacteristics fetches correct value
ok 115 - addCharacteristics returns number of items in list
ok 116 - addCharacteristics adds correct value
ok 117 - setCharacteristics throws exception with non-array argument
ok 118 - setCharacteristics throws exception with bad argument array
ok 119 - addCharacteristics throws exception with no arguments
ok 120 - addCharacteristics throws exception with bad array
ok 121 - setCharacteristics accepts empty array ref
ok 122 - getCharacteristics throws exception with argument
ok 123 - setCharacteristics throws exception with no argument
ok 124 - setCharacteristics throws exception with too many argument
ok 125 - setCharacteristics accepts undef
ok 126 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 127 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 128 - characteristics->other() is a valid Bio::MAGE::Association::End
ok 129 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 130 - characteristics->self() is a valid Bio::MAGE::Association::End
ok 131 - treatments set in new()
ok 132 - setTreatments returns correct value
ok 133 - getTreatments fetches correct value
ok 134 - addTreatments returns number of items in list
ok 135 - addTreatments adds correct value
ok 136 - setTreatments throws exception with non-array argument
ok 137 - setTreatments throws exception with bad argument array
ok 138 - addTreatments throws exception with no arguments
ok 139 - addTreatments throws exception with bad array
ok 140 - setTreatments accepts empty array ref
ok 141 - getTreatments throws exception with argument
ok 142 - setTreatments throws exception with no argument
ok 143 - setTreatments throws exception with too many argument
ok 144 - setTreatments accepts undef
ok 145 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 146 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 147 - treatments->other() is a valid Bio::MAGE::Association::End
ok 148 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 149 - treatments->self() is a valid Bio::MAGE::Association::End
ok 150 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 151 - setSecurity returns value
ok 152 - getSecurity fetches correct value
ok 153 - setSecurity throws exception with bad argument
ok 154 - getSecurity throws exception with argument
ok 155 - setSecurity throws exception with no argument
ok 156 - setSecurity throws exception with too many argument
ok 157 - setSecurity accepts undef
ok 158 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 159 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 160 - security->other() is a valid Bio::MAGE::Association::End
ok 161 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 162 - security->self() is a valid Bio::MAGE::Association::End
ok 163 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 164 - setMaterialType returns value
ok 165 - getMaterialType fetches correct value
ok 166 - setMaterialType throws exception with bad argument
ok 167 - getMaterialType throws exception with argument
ok 168 - setMaterialType throws exception with no argument
ok 169 - setMaterialType throws exception with too many argument
ok 170 - setMaterialType accepts undef
ok 171 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 172 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 173 - materialType->other() is a valid Bio::MAGE::Association::End
ok 174 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 175 - materialType->self() is a valid Bio::MAGE::Association::End
ok 176 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial'
ok 177 - An object of class 'Bio::MAGE::BioMaterial::BioSource' isa 'Bio::MAGE::BioMaterial::BioMaterial'
ok
t/BQS_package.t ..................
1..6
ok 1 - use Bio::MAGE::BQS;
ok 2 - number of subclasses
ok 3 - An object of class 'Bio::MAGE::BQS::BibliographicReference' isa 'Bio::MAGE::BQS::BibliographicReference'
ok 4 - An object of class 'Bio::MAGE::BQS' isa 'Bio::MAGE::BQS'
ok 5 - tagname
ok 6 - xml_lists
ok
t/Channel.t ......................
1..107
ok 1 - use Bio::MAGE::BioAssay::Channel;
ok 2 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - descriptions set in new()
ok 18 - setDescriptions returns correct value
ok 19 - getDescriptions fetches correct value
ok 20 - addDescriptions returns number of items in list
ok 21 - addDescriptions adds correct value
ok 22 - setDescriptions throws exception with non-array argument
ok 23 - setDescriptions throws exception with bad argument array
ok 24 - addDescriptions throws exception with no arguments
ok 25 - addDescriptions throws exception with bad array
ok 26 - setDescriptions accepts empty array ref
ok 27 - getDescriptions throws exception with argument
ok 28 - setDescriptions throws exception with no argument
ok 29 - setDescriptions throws exception with too many argument
ok 30 - setDescriptions accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 36 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 37 - setSecurity returns value
ok 38 - getSecurity fetches correct value
ok 39 - setSecurity throws exception with bad argument
ok 40 - getSecurity throws exception with argument
ok 41 - setSecurity throws exception with no argument
ok 42 - setSecurity throws exception with too many argument
ok 43 - setSecurity accepts undef
ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 46 - security->other() is a valid Bio::MAGE::Association::End
ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 48 - security->self() is a valid Bio::MAGE::Association::End
ok 49 - auditTrail set in new()
ok 50 - setAuditTrail returns correct value
ok 51 - getAuditTrail fetches correct value
ok 52 - addAuditTrail returns number of items in list
ok 53 - addAuditTrail adds correct value
ok 54 - setAuditTrail throws exception with non-array argument
ok 55 - setAuditTrail throws exception with bad argument array
ok 56 - addAuditTrail throws exception with no arguments
ok 57 - addAuditTrail throws exception with bad array
ok 58 - setAuditTrail accepts empty array ref
ok 59 - getAuditTrail throws exception with argument
ok 60 - setAuditTrail throws exception with no argument
ok 61 - setAuditTrail throws exception with too many argument
ok 62 - setAuditTrail accepts undef
ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 65 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 67 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 68 - propertySets set in new()
ok 69 - setPropertySets returns correct value
ok 70 - getPropertySets fetches correct value
ok 71 - addPropertySets returns number of items in list
ok 72 - addPropertySets adds correct value
ok 73 - setPropertySets throws exception with non-array argument
ok 74 - setPropertySets throws exception with bad argument array
ok 75 - addPropertySets throws exception with no arguments
ok 76 - addPropertySets throws exception with bad array
ok 77 - setPropertySets accepts empty array ref
ok 78 - getPropertySets throws exception with argument
ok 79 - setPropertySets throws exception with no argument
ok 80 - setPropertySets throws exception with too many argument
ok 81 - setPropertySets accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 87 - labels set in new()
ok 88 - setLabels returns correct value
ok 89 - getLabels fetches correct value
ok 90 - addLabels returns number of items in list
ok 91 - addLabels adds correct value
ok 92 - setLabels throws exception with non-array argument
ok 93 - setLabels throws exception with bad argument array
ok 94 - addLabels throws exception with no arguments
ok 95 - addLabels throws exception with bad array
ok 96 - setLabels accepts empty array ref
ok 97 - getLabels throws exception with argument
ok 98 - setLabels throws exception with no argument
ok 99 - setLabels throws exception with too many argument
ok 100 - setLabels accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - labels->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - labels->self() is a valid Bio::MAGE::Association::End
ok 106 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 107 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::Identifiable'
ok
t/CompositeCompositeMap.t ........
1..139
ok 1 - use Bio::MAGE::DesignElement::CompositeCompositeMap;
ok 2 - An object of class 'Bio::MAGE::DesignElement::CompositeCompositeMap' isa 'Bio::MAGE::DesignElement::CompositeCompositeMap'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - protocolApplications set in new()
ok 18 - setProtocolApplications returns correct value
ok 19 - getProtocolApplications fetches correct value
ok 20 - addProtocolApplications returns number of items in list
ok 21 - addProtocolApplications adds correct value
ok 22 - setProtocolApplications throws exception with non-array argument
ok 23 - setProtocolApplications throws exception with bad argument array
ok 24 - addProtocolApplications throws exception with no arguments
ok 25 - addProtocolApplications throws exception with bad array
ok 26 - setProtocolApplications accepts empty array ref
ok 27 - getProtocolApplications throws exception with argument
ok 28 - setProtocolApplications throws exception with no argument
ok 29 - setProtocolApplications throws exception with too many argument
ok 30 - setProtocolApplications accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End
ok 36 - descriptions set in new()
ok 37 - setDescriptions returns correct value
ok 38 - getDescriptions fetches correct value
ok 39 - addDescriptions returns number of items in list
ok 40 - addDescriptions adds correct value
ok 41 - setDescriptions throws exception with non-array argument
ok 42 - setDescriptions throws exception with bad argument array
ok 43 - addDescriptions throws exception with no arguments
ok 44 - addDescriptions throws exception with bad array
ok 45 - setDescriptions accepts empty array ref
ok 46 - getDescriptions throws exception with argument
ok 47 - setDescriptions throws exception with no argument
ok 48 - setDescriptions throws exception with too many argument
ok 49 - setDescriptions accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 55 - auditTrail set in new()
ok 56 - setAuditTrail returns correct value
ok 57 - getAuditTrail fetches correct value
ok 58 - addAuditTrail returns number of items in list
ok 59 - addAuditTrail adds correct value
ok 60 - setAuditTrail throws exception with non-array argument
ok 61 - setAuditTrail throws exception with bad argument array
ok 62 - addAuditTrail throws exception with no arguments
ok 63 - addAuditTrail throws exception with bad array
ok 64 - setAuditTrail accepts empty array ref
ok 65 - getAuditTrail throws exception with argument
ok 66 - setAuditTrail throws exception with no argument
ok 67 - setAuditTrail throws exception with too many argument
ok 68 - setAuditTrail accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 75 - setSecurity returns value
ok 76 - getSecurity fetches correct value
ok 77 - setSecurity throws exception with bad argument
ok 78 - getSecurity throws exception with argument
ok 79 - setSecurity throws exception with no argument
ok 80 - setSecurity throws exception with too many argument
ok 81 - setSecurity accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - security->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - security->self() is a valid Bio::MAGE::Association::End
ok 87 - propertySets set in new()
ok 88 - setPropertySets returns correct value
ok 89 - getPropertySets fetches correct value
ok 90 - addPropertySets returns number of items in list
ok 91 - addPropertySets adds correct value
ok 92 - setPropertySets throws exception with non-array argument
ok 93 - setPropertySets throws exception with bad argument array
ok 94 - addPropertySets throws exception with no arguments
ok 95 - addPropertySets throws exception with bad array
ok 96 - setPropertySets accepts empty array ref
ok 97 - getPropertySets throws exception with argument
ok 98 - setPropertySets throws exception with no argument
ok 99 - setPropertySets throws exception with too many argument
ok 100 - setPropertySets accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 106 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::CompositeSequence'
ok 107 - setCompositeSequence returns value
ok 108 - getCompositeSequence fetches correct value
ok 109 - setCompositeSequence throws exception with bad argument
ok 110 - getCompositeSequence throws exception with argument
ok 111 - setCompositeSequence throws exception with no argument
ok 112 - setCompositeSequence throws exception with too many argument
ok 113 - setCompositeSequence accepts undef
ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 116 - compositeSequence->other() is a valid Bio::MAGE::Association::End
ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 118 - compositeSequence->self() is a valid Bio::MAGE::Association::End
ok 119 - compositePositionSources set in new()
ok 120 - setCompositePositionSources returns correct value
ok 121 - getCompositePositionSources fetches correct value
ok 122 - addCompositePositionSources returns number of items in list
ok 123 - addCompositePositionSources adds correct value
ok 124 - setCompositePositionSources throws exception with non-array argument
ok 125 - setCompositePositionSources throws exception with bad argument array
ok 126 - addCompositePositionSources throws exception with no arguments
ok 127 - addCompositePositionSources throws exception with bad array
ok 128 - setCompositePositionSources accepts empty array ref
ok 129 - getCompositePositionSources throws exception with argument
ok 130 - setCompositePositionSources throws exception with no argument
ok 131 - setCompositePositionSources throws exception with too many argument
ok 132 - setCompositePositionSources accepts undef
ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 135 - compositePositionSources->other() is a valid Bio::MAGE::Association::End
ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 137 - compositePositionSources->self() is a valid Bio::MAGE::Association::End
ok 138 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap'
ok 139 - An object of class 'Bio::MAGE::DesignElement::CompositeCompositeMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap'
ok
t/CompositeGroup.t ...............
1..139
ok 1 - use Bio::MAGE::ArrayDesign::CompositeGroup;
ok 2 - An object of class 'Bio::MAGE::ArrayDesign::CompositeGroup' isa 'Bio::MAGE::ArrayDesign::CompositeGroup'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - types set in new()
ok 18 - setTypes returns correct value
ok 19 - getTypes fetches correct value
ok 20 - addTypes returns number of items in list
ok 21 - addTypes adds correct value
ok 22 - setTypes throws exception with non-array argument
ok 23 - setTypes throws exception with bad argument array
ok 24 - addTypes throws exception with no arguments
ok 25 - addTypes throws exception with bad array
ok 26 - setTypes accepts empty array ref
ok 27 - getTypes throws exception with argument
ok 28 - setTypes throws exception with no argument
ok 29 - setTypes throws exception with too many argument
ok 30 - setTypes accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - types->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - types->self() is a valid Bio::MAGE::Association::End
ok 36 - compositeSequences set in new()
ok 37 - setCompositeSequences returns correct value
ok 38 - getCompositeSequences fetches correct value
ok 39 - addCompositeSequences returns number of items in list
ok 40 - addCompositeSequences adds correct value
ok 41 - setCompositeSequences throws exception with non-array argument
ok 42 - setCompositeSequences throws exception with bad argument array
ok 43 - addCompositeSequences throws exception with no arguments
ok 44 - addCompositeSequences throws exception with bad array
ok 45 - setCompositeSequences accepts empty array ref
ok 46 - getCompositeSequences throws exception with argument
ok 47 - setCompositeSequences throws exception with no argument
ok 48 - setCompositeSequences throws exception with too many argument
ok 49 - setCompositeSequences accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - compositeSequences->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - compositeSequences->self() is a valid Bio::MAGE::Association::End
ok 55 - descriptions set in new()
ok 56 - setDescriptions returns correct value
ok 57 - getDescriptions fetches correct value
ok 58 - addDescriptions returns number of items in list
ok 59 - addDescriptions adds correct value
ok 60 - setDescriptions throws exception with non-array argument
ok 61 - setDescriptions throws exception with bad argument array
ok 62 - addDescriptions throws exception with no arguments
ok 63 - addDescriptions throws exception with bad array
ok 64 - setDescriptions accepts empty array ref
ok 65 - getDescriptions throws exception with argument
ok 66 - setDescriptions throws exception with no argument
ok 67 - setDescriptions throws exception with too many argument
ok 68 - setDescriptions accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 74 - auditTrail set in new()
ok 75 - setAuditTrail returns correct value
ok 76 - getAuditTrail fetches correct value
ok 77 - addAuditTrail returns number of items in list
ok 78 - addAuditTrail adds correct value
ok 79 - setAuditTrail throws exception with non-array argument
ok 80 - setAuditTrail throws exception with bad argument array
ok 81 - addAuditTrail throws exception with no arguments
ok 82 - addAuditTrail throws exception with bad array
ok 83 - setAuditTrail accepts empty array ref
ok 84 - getAuditTrail throws exception with argument
ok 85 - setAuditTrail throws exception with no argument
ok 86 - setAuditTrail throws exception with too many argument
ok 87 - setAuditTrail accepts undef
ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 90 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 92 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 93 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 94 - setSecurity returns value
ok 95 - getSecurity fetches correct value
ok 96 - setSecurity throws exception with bad argument
ok 97 - getSecurity throws exception with argument
ok 98 - setSecurity throws exception with no argument
ok 99 - setSecurity throws exception with too many argument
ok 100 - setSecurity accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - security->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - security->self() is a valid Bio::MAGE::Association::End
ok 106 - propertySets set in new()
ok 107 - setPropertySets returns correct value
ok 108 - getPropertySets fetches correct value
ok 109 - addPropertySets returns number of items in list
ok 110 - addPropertySets adds correct value
ok 111 - setPropertySets throws exception with non-array argument
ok 112 - setPropertySets throws exception with bad argument array
ok 113 - addPropertySets throws exception with no arguments
ok 114 - addPropertySets throws exception with bad array
ok 115 - setPropertySets accepts empty array ref
ok 116 - getPropertySets throws exception with argument
ok 117 - setPropertySets throws exception with no argument
ok 118 - setPropertySets throws exception with too many argument
ok 119 - setPropertySets accepts undef
ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 122 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 124 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 125 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 126 - setSpecies returns value
ok 127 - getSpecies fetches correct value
ok 128 - setSpecies throws exception with bad argument
ok 129 - getSpecies throws exception with argument
ok 130 - setSpecies throws exception with no argument
ok 131 - setSpecies throws exception with too many argument
ok 132 - setSpecies accepts undef
ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 135 - species->other() is a valid Bio::MAGE::Association::End
ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 137 - species->self() is a valid Bio::MAGE::Association::End
ok 138 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup'
ok 139 - An object of class 'Bio::MAGE::ArrayDesign::CompositeGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup'
ok
t/CompositePosition.t ............
1..69
ok 1 - use Bio::MAGE::DesignElement::CompositePosition;
ok 2 - An object of class 'Bio::MAGE::DesignElement::CompositePosition' isa 'Bio::MAGE::DesignElement::CompositePosition'
ok 3 - package
ok 4 - class_name
ok 5 - end new
ok 6 - end getter/setter
ok 7 - end getter throws exception with argument
ok 8 - end setter throws exception with no argument
ok 9 - end setter throws exception with too many argument
ok 10 - end setter accepts undef
ok 11 - start new
ok 12 - start getter/setter
ok 13 - start getter throws exception with argument
ok 14 - start setter throws exception with no argument
ok 15 - start setter throws exception with too many argument
ok 16 - start setter accepts undef
ok 17 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::CompositeSequence'
ok 18 - setComposite returns value
ok 19 - getComposite fetches correct value
ok 20 - setComposite throws exception with bad argument
ok 21 - getComposite throws exception with argument
ok 22 - setComposite throws exception with no argument
ok 23 - setComposite throws exception with too many argument
ok 24 - setComposite accepts undef
ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 27 - composite->other() is a valid Bio::MAGE::Association::End
ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 29 - composite->self() is a valid Bio::MAGE::Association::End
ok 30 - propertySets set in new()
ok 31 - setPropertySets returns correct value
ok 32 - getPropertySets fetches correct value
ok 33 - addPropertySets returns number of items in list
ok 34 - addPropertySets adds correct value
ok 35 - setPropertySets throws exception with non-array argument
ok 36 - setPropertySets throws exception with bad argument array
ok 37 - addPropertySets throws exception with no arguments
ok 38 - addPropertySets throws exception with bad array
ok 39 - setPropertySets accepts empty array ref
ok 40 - getPropertySets throws exception with argument
ok 41 - setPropertySets throws exception with no argument
ok 42 - setPropertySets throws exception with too many argument
ok 43 - setPropertySets accepts undef
ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 46 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 48 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 49 - mismatchInformation set in new()
ok 50 - setMismatchInformation returns correct value
ok 51 - getMismatchInformation fetches correct value
ok 52 - addMismatchInformation returns number of items in list
ok 53 - addMismatchInformation adds correct value
ok 54 - setMismatchInformation throws exception with non-array argument
ok 55 - setMismatchInformation throws exception with bad argument array
ok 56 - addMismatchInformation throws exception with no arguments
ok 57 - addMismatchInformation throws exception with bad array
ok 58 - setMismatchInformation accepts empty array ref
ok 59 - getMismatchInformation throws exception with argument
ok 60 - setMismatchInformation throws exception with no argument
ok 61 - setMismatchInformation throws exception with too many argument
ok 62 - setMismatchInformation accepts undef
ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 65 - mismatchInformation->other() is a valid Bio::MAGE::Association::End
ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 67 - mismatchInformation->self() is a valid Bio::MAGE::Association::End
ok 68 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::BioSequence::SequencePosition'
ok 69 - An object of class 'Bio::MAGE::DesignElement::CompositePosition' isa 'Bio::MAGE::BioSequence::SequencePosition'
ok
t/CompositeSequence.t ............
1..158
ok 1 - use Bio::MAGE::DesignElement::CompositeSequence;
ok 2 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::CompositeSequence'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 18 - setControlType returns value
ok 19 - getControlType fetches correct value
ok 20 - setControlType throws exception with bad argument
ok 21 - getControlType throws exception with argument
ok 22 - setControlType throws exception with no argument
ok 23 - setControlType throws exception with too many argument
ok 24 - setControlType accepts undef
ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 27 - controlType->other() is a valid Bio::MAGE::Association::End
ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 29 - controlType->self() is a valid Bio::MAGE::Association::End
ok 30 - compositeCompositeMaps set in new()
ok 31 - setCompositeCompositeMaps returns correct value
ok 32 - getCompositeCompositeMaps fetches correct value
ok 33 - addCompositeCompositeMaps returns number of items in list
ok 34 - addCompositeCompositeMaps adds correct value
ok 35 - setCompositeCompositeMaps throws exception with non-array argument
ok 36 - setCompositeCompositeMaps throws exception with bad argument array
ok 37 - addCompositeCompositeMaps throws exception with no arguments
ok 38 - addCompositeCompositeMaps throws exception with bad array
ok 39 - setCompositeCompositeMaps accepts empty array ref
ok 40 - getCompositeCompositeMaps throws exception with argument
ok 41 - setCompositeCompositeMaps throws exception with no argument
ok 42 - setCompositeCompositeMaps throws exception with too many argument
ok 43 - setCompositeCompositeMaps accepts undef
ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 46 - compositeCompositeMaps->other() is a valid Bio::MAGE::Association::End
ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 48 - compositeCompositeMaps->self() is a valid Bio::MAGE::Association::End
ok 49 - auditTrail set in new()
ok 50 - setAuditTrail returns correct value
ok 51 - getAuditTrail fetches correct value
ok 52 - addAuditTrail returns number of items in list
ok 53 - addAuditTrail adds correct value
ok 54 - setAuditTrail throws exception with non-array argument
ok 55 - setAuditTrail throws exception with bad argument array
ok 56 - addAuditTrail throws exception with no arguments
ok 57 - addAuditTrail throws exception with bad array
ok 58 - setAuditTrail accepts empty array ref
ok 59 - getAuditTrail throws exception with argument
ok 60 - setAuditTrail throws exception with no argument
ok 61 - setAuditTrail throws exception with too many argument
ok 62 - setAuditTrail accepts undef
ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 65 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 67 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 68 - propertySets set in new()
ok 69 - setPropertySets returns correct value
ok 70 - getPropertySets fetches correct value
ok 71 - addPropertySets returns number of items in list
ok 72 - addPropertySets adds correct value
ok 73 - setPropertySets throws exception with non-array argument
ok 74 - setPropertySets throws exception with bad argument array
ok 75 - addPropertySets throws exception with no arguments
ok 76 - addPropertySets throws exception with bad array
ok 77 - setPropertySets accepts empty array ref
ok 78 - getPropertySets throws exception with argument
ok 79 - setPropertySets throws exception with no argument
ok 80 - setPropertySets throws exception with too many argument
ok 81 - setPropertySets accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 87 - descriptions set in new()
ok 88 - setDescriptions returns correct value
ok 89 - getDescriptions fetches correct value
ok 90 - addDescriptions returns number of items in list
ok 91 - addDescriptions adds correct value
ok 92 - setDescriptions throws exception with non-array argument
ok 93 - setDescriptions throws exception with bad argument array
ok 94 - addDescriptions throws exception with no arguments
ok 95 - addDescriptions throws exception with bad array
ok 96 - setDescriptions accepts empty array ref
ok 97 - getDescriptions throws exception with argument
ok 98 - setDescriptions throws exception with no argument
ok 99 - setDescriptions throws exception with too many argument
ok 100 - setDescriptions accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 106 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 107 - setSecurity returns value
ok 108 - getSecurity fetches correct value
ok 109 - setSecurity throws exception with bad argument
ok 110 - getSecurity throws exception with argument
ok 111 - setSecurity throws exception with no argument
ok 112 - setSecurity throws exception with too many argument
ok 113 - setSecurity accepts undef
ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 116 - security->other() is a valid Bio::MAGE::Association::End
ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 118 - security->self() is a valid Bio::MAGE::Association::End
ok 119 - biologicalCharacteristics set in new()
ok 120 - setBiologicalCharacteristics returns correct value
ok 121 - getBiologicalCharacteristics fetches correct value
ok 122 - addBiologicalCharacteristics returns number of items in list
ok 123 - addBiologicalCharacteristics adds correct value
ok 124 - setBiologicalCharacteristics throws exception with non-array argument
ok 125 - setBiologicalCharacteristics throws exception with bad argument array
ok 126 - addBiologicalCharacteristics throws exception with no arguments
ok 127 - addBiologicalCharacteristics throws exception with bad array
ok 128 - setBiologicalCharacteristics accepts empty array ref
ok 129 - getBiologicalCharacteristics throws exception with argument
ok 130 - setBiologicalCharacteristics throws exception with no argument
ok 131 - setBiologicalCharacteristics throws exception with too many argument
ok 132 - setBiologicalCharacteristics accepts undef
ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 135 - biologicalCharacteristics->other() is a valid Bio::MAGE::Association::End
ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 137 - biologicalCharacteristics->self() is a valid Bio::MAGE::Association::End
ok 138 - reporterCompositeMaps set in new()
ok 139 - setReporterCompositeMaps returns correct value
ok 140 - getReporterCompositeMaps fetches correct value
ok 141 - addReporterCompositeMaps returns number of items in list
ok 142 - addReporterCompositeMaps adds correct value
ok 143 - setReporterCompositeMaps throws exception with non-array argument
ok 144 - setReporterCompositeMaps throws exception with bad argument array
ok 145 - addReporterCompositeMaps throws exception with no arguments
ok 146 - addReporterCompositeMaps throws exception with bad array
ok 147 - setReporterCompositeMaps accepts empty array ref
ok 148 - getReporterCompositeMaps throws exception with argument
ok 149 - setReporterCompositeMaps throws exception with no argument
ok 150 - setReporterCompositeMaps throws exception with too many argument
ok 151 - setReporterCompositeMaps accepts undef
ok 152 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 154 - reporterCompositeMaps->other() is a valid Bio::MAGE::Association::End
ok 155 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 156 - reporterCompositeMaps->self() is a valid Bio::MAGE::Association::End
ok 157 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::DesignElement::DesignElement'
ok 158 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::DesignElement'
ok
t/CompositeSequenceDimension.t ...
1..107
ok 1 - use Bio::MAGE::BioAssayData::CompositeSequenceDimension;
ok 2 - An object of class 'Bio::MAGE::BioAssayData::CompositeSequenceDimension' isa 'Bio::MAGE::BioAssayData::CompositeSequenceDimension'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - compositeSequences set in new()
ok 18 - setCompositeSequences returns correct value
ok 19 - getCompositeSequences fetches correct value
ok 20 - addCompositeSequences returns number of items in list
ok 21 - addCompositeSequences adds correct value
ok 22 - setCompositeSequences throws exception with non-array argument
ok 23 - setCompositeSequences throws exception with bad argument array
ok 24 - addCompositeSequences throws exception with no arguments
ok 25 - addCompositeSequences throws exception with bad array
ok 26 - setCompositeSequences accepts empty array ref
ok 27 - getCompositeSequences throws exception with argument
ok 28 - setCompositeSequences throws exception with no argument
ok 29 - setCompositeSequences throws exception with too many argument
ok 30 - setCompositeSequences accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - compositeSequences->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - compositeSequences->self() is a valid Bio::MAGE::Association::End
ok 36 - descriptions set in new()
ok 37 - setDescriptions returns correct value
ok 38 - getDescriptions fetches correct value
ok 39 - addDescriptions returns number of items in list
ok 40 - addDescriptions adds correct value
ok 41 - setDescriptions throws exception with non-array argument
ok 42 - setDescriptions throws exception with bad argument array
ok 43 - addDescriptions throws exception with no arguments
ok 44 - addDescriptions throws exception with bad array
ok 45 - setDescriptions accepts empty array ref
ok 46 - getDescriptions throws exception with argument
ok 47 - setDescriptions throws exception with no argument
ok 48 - setDescriptions throws exception with too many argument
ok 49 - setDescriptions accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 55 - auditTrail set in new()
ok 56 - setAuditTrail returns correct value
ok 57 - getAuditTrail fetches correct value
ok 58 - addAuditTrail returns number of items in list
ok 59 - addAuditTrail adds correct value
ok 60 - setAuditTrail throws exception with non-array argument
ok 61 - setAuditTrail throws exception with bad argument array
ok 62 - addAuditTrail throws exception with no arguments
ok 63 - addAuditTrail throws exception with bad array
ok 64 - setAuditTrail accepts empty array ref
ok 65 - getAuditTrail throws exception with argument
ok 66 - setAuditTrail throws exception with no argument
ok 67 - setAuditTrail throws exception with too many argument
ok 68 - setAuditTrail accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 75 - setSecurity returns value
ok 76 - getSecurity fetches correct value
ok 77 - setSecurity throws exception with bad argument
ok 78 - getSecurity throws exception with argument
ok 79 - setSecurity throws exception with no argument
ok 80 - setSecurity throws exception with too many argument
ok 81 - setSecurity accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - security->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - security->self() is a valid Bio::MAGE::Association::End
ok 87 - propertySets set in new()
ok 88 - setPropertySets returns correct value
ok 89 - getPropertySets fetches correct value
ok 90 - addPropertySets returns number of items in list
ok 91 - addPropertySets adds correct value
ok 92 - setPropertySets throws exception with non-array argument
ok 93 - setPropertySets throws exception with bad argument array
ok 94 - addPropertySets throws exception with no arguments
ok 95 - addPropertySets throws exception with bad array
ok 96 - setPropertySets accepts empty array ref
ok 97 - getPropertySets throws exception with argument
ok 98 - setPropertySets throws exception with no argument
ok 99 - setPropertySets throws exception with too many argument
ok 100 - setPropertySets accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 106 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension'
ok 107 - An object of class 'Bio::MAGE::BioAssayData::CompositeSequenceDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension'
ok
t/Compound.t .....................
1..145
ok 1 - use Bio::MAGE::BioMaterial::Compound;
ok 2 - An object of class 'Bio::MAGE::BioMaterial::Compound' isa 'Bio::MAGE::BioMaterial::Compound'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - isSolvent new
ok 18 - isSolvent getter/setter
ok 19 - isSolvent getter throws exception with argument
ok 20 - isSolvent setter throws exception with no argument
ok 21 - isSolvent setter throws exception with too many argument
ok 22 - isSolvent setter accepts undef
ok 23 - compoundIndices set in new()
ok 24 - setCompoundIndices returns correct value
ok 25 - getCompoundIndices fetches correct value
ok 26 - addCompoundIndices returns number of items in list
ok 27 - addCompoundIndices adds correct value
ok 28 - setCompoundIndices throws exception with non-array argument
ok 29 - setCompoundIndices throws exception with bad argument array
ok 30 - addCompoundIndices throws exception with no arguments
ok 31 - addCompoundIndices throws exception with bad array
ok 32 - setCompoundIndices accepts empty array ref
ok 33 - getCompoundIndices throws exception with argument
ok 34 - setCompoundIndices throws exception with no argument
ok 35 - setCompoundIndices throws exception with too many argument
ok 36 - setCompoundIndices accepts undef
ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 39 - compoundIndices->other() is a valid Bio::MAGE::Association::End
ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 41 - compoundIndices->self() is a valid Bio::MAGE::Association::End
ok 42 - componentCompounds set in new()
ok 43 - setComponentCompounds returns correct value
ok 44 - getComponentCompounds fetches correct value
ok 45 - addComponentCompounds returns number of items in list
ok 46 - addComponentCompounds adds correct value
ok 47 - setComponentCompounds throws exception with non-array argument
ok 48 - setComponentCompounds throws exception with bad argument array
ok 49 - addComponentCompounds throws exception with no arguments
ok 50 - addComponentCompounds throws exception with bad array
ok 51 - setComponentCompounds accepts empty array ref
ok 52 - getComponentCompounds throws exception with argument
ok 53 - setComponentCompounds throws exception with no argument
ok 54 - setComponentCompounds throws exception with too many argument
ok 55 - setComponentCompounds accepts undef
ok 56 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 57 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 58 - componentCompounds->other() is a valid Bio::MAGE::Association::End
ok 59 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 60 - componentCompounds->self() is a valid Bio::MAGE::Association::End
ok 61 - descriptions set in new()
ok 62 - setDescriptions returns correct value
ok 63 - getDescriptions fetches correct value
ok 64 - addDescriptions returns number of items in list
ok 65 - addDescriptions adds correct value
ok 66 - setDescriptions throws exception with non-array argument
ok 67 - setDescriptions throws exception with bad argument array
ok 68 - addDescriptions throws exception with no arguments
ok 69 - addDescriptions throws exception with bad array
ok 70 - setDescriptions accepts empty array ref
ok 71 - getDescriptions throws exception with argument
ok 72 - setDescriptions throws exception with no argument
ok 73 - setDescriptions throws exception with too many argument
ok 74 - setDescriptions accepts undef
ok 75 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 76 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 77 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 79 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 80 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Description::DatabaseEntry'
ok 81 - setExternalLIMS returns value
ok 82 - getExternalLIMS fetches correct value
ok 83 - setExternalLIMS throws exception with bad argument
ok 84 - getExternalLIMS throws exception with argument
ok 85 - setExternalLIMS throws exception with no argument
ok 86 - setExternalLIMS throws exception with too many argument
ok 87 - setExternalLIMS accepts undef
ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 90 - externalLIMS->other() is a valid Bio::MAGE::Association::End
ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 92 - externalLIMS->self() is a valid Bio::MAGE::Association::End
ok 93 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 94 - setSecurity returns value
ok 95 - getSecurity fetches correct value
ok 96 - setSecurity throws exception with bad argument
ok 97 - getSecurity throws exception with argument
ok 98 - setSecurity throws exception with no argument
ok 99 - setSecurity throws exception with too many argument
ok 100 - setSecurity accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - security->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - security->self() is a valid Bio::MAGE::Association::End
ok 106 - auditTrail set in new()
ok 107 - setAuditTrail returns correct value
ok 108 - getAuditTrail fetches correct value
ok 109 - addAuditTrail returns number of items in list
ok 110 - addAuditTrail adds correct value
ok 111 - setAuditTrail throws exception with non-array argument
ok 112 - setAuditTrail throws exception with bad argument array
ok 113 - addAuditTrail throws exception with no arguments
ok 114 - addAuditTrail throws exception with bad array
ok 115 - setAuditTrail accepts empty array ref
ok 116 - getAuditTrail throws exception with argument
ok 117 - setAuditTrail throws exception with no argument
ok 118 - setAuditTrail throws exception with too many argument
ok 119 - setAuditTrail accepts undef
ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 122 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 124 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 125 - propertySets set in new()
ok 126 - setPropertySets returns correct value
ok 127 - getPropertySets fetches correct value
ok 128 - addPropertySets returns number of items in list
ok 129 - addPropertySets adds correct value
ok 130 - setPropertySets throws exception with non-array argument
ok 131 - setPropertySets throws exception with bad argument array
ok 132 - addPropertySets throws exception with no arguments
ok 133 - addPropertySets throws exception with bad array
ok 134 - setPropertySets accepts empty array ref
ok 135 - getPropertySets throws exception with argument
ok 136 - setPropertySets throws exception with no argument
ok 137 - setPropertySets throws exception with too many argument
ok 138 - setPropertySets accepts undef
ok 139 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 141 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 142 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 143 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 144 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 145 - An object of class 'Bio::MAGE::BioMaterial::Compound' isa 'Bio::MAGE::Identifiable'
ok
t/CompoundMeasurement.t ..........
1..51
ok 1 - use Bio::MAGE::BioMaterial::CompoundMeasurement;
ok 2 - An object of class 'Bio::MAGE::BioMaterial::CompoundMeasurement' isa 'Bio::MAGE::BioMaterial::CompoundMeasurement'
ok 3 - package
ok 4 - class_name
ok 5 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement'
ok 6 - setMeasurement returns value
ok 7 - getMeasurement fetches correct value
ok 8 - setMeasurement throws exception with bad argument
ok 9 - getMeasurement throws exception with argument
ok 10 - setMeasurement throws exception with no argument
ok 11 - setMeasurement throws exception with too many argument
ok 12 - setMeasurement accepts undef
ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 15 - measurement->other() is a valid Bio::MAGE::Association::End
ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 17 - measurement->self() is a valid Bio::MAGE::Association::End
ok 18 - An object of class 'Bio::MAGE::BioMaterial::Compound' isa 'Bio::MAGE::BioMaterial::Compound'
ok 19 - setCompound returns value
ok 20 - getCompound fetches correct value
ok 21 - setCompound throws exception with bad argument
ok 22 - getCompound throws exception with argument
ok 23 - setCompound throws exception with no argument
ok 24 - setCompound throws exception with too many argument
ok 25 - setCompound accepts undef
ok 26 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 27 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 28 - compound->other() is a valid Bio::MAGE::Association::End
ok 29 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 30 - compound->self() is a valid Bio::MAGE::Association::End
ok 31 - propertySets set in new()
ok 32 - setPropertySets returns correct value
ok 33 - getPropertySets fetches correct value
ok 34 - addPropertySets returns number of items in list
ok 35 - addPropertySets adds correct value
ok 36 - setPropertySets throws exception with non-array argument
ok 37 - setPropertySets throws exception with bad argument array
ok 38 - addPropertySets throws exception with no arguments
ok 39 - addPropertySets throws exception with bad array
ok 40 - setPropertySets accepts empty array ref
ok 41 - getPropertySets throws exception with argument
ok 42 - setPropertySets throws exception with no argument
ok 43 - setPropertySets throws exception with too many argument
ok 44 - setPropertySets accepts undef
ok 45 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 47 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 48 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 49 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 50 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable'
ok 51 - An object of class 'Bio::MAGE::BioMaterial::CompoundMeasurement' isa 'Bio::MAGE::Extendable'
ok
t/ConcentrationUnit.t ............
1..51
ok 1 - use Bio::MAGE::Measurement::ConcentrationUnit;
ok 2 - An object of class 'Bio::MAGE::Measurement::ConcentrationUnit' isa 'Bio::MAGE::Measurement::ConcentrationUnit'
ok 3 - package
ok 4 - class_name
ok 5 - unitName new
ok 6 - unitName getter/setter
ok 7 - unitName getter throws exception with argument
ok 8 - unitName setter throws exception with no argument
ok 9 - unitName setter throws exception with too many argument
ok 10 - unitName setter accepts undef
ok 11 - unitNameCV new
ok 12 - unitNameCV getter/setter
ok 13 - unitNameCV getter throws exception with argument
ok 14 - unitNameCV setter throws exception with no argument
ok 15 - unitNameCV setter throws exception with too many argument
ok 16 - unitNameCV setter accepts undef
ok 17 - unitNameCV setter throws exception with bad argument
ok 18 - unitNameCV accepts M
ok 19 - unitNameCV accepts mM
ok 20 - unitNameCV accepts uM
ok 21 - unitNameCV accepts nM
ok 22 - unitNameCV accepts pM
ok 23 - unitNameCV accepts fM
ok 24 - unitNameCV accepts mg_per_mL
ok 25 - unitNameCV accepts mL_per_L
ok 26 - unitNameCV accepts g_per_L
ok 27 - unitNameCV accepts gram_percent
ok 28 - unitNameCV accepts mass_per_volume_percent
ok 29 - unitNameCV accepts mass_per_mass_percent
ok 30 - unitNameCV accepts other
ok 31 - propertySets set in new()
ok 32 - setPropertySets returns correct value
ok 33 - getPropertySets fetches correct value
ok 34 - addPropertySets returns number of items in list
ok 35 - addPropertySets adds correct value
ok 36 - setPropertySets throws exception with non-array argument
ok 37 - setPropertySets throws exception with bad argument array
ok 38 - addPropertySets throws exception with no arguments
ok 39 - addPropertySets throws exception with bad array
ok 40 - setPropertySets accepts empty array ref
ok 41 - getPropertySets throws exception with argument
ok 42 - setPropertySets throws exception with no argument
ok 43 - setPropertySets throws exception with too many argument
ok 44 - setPropertySets accepts undef
ok 45 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 47 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 48 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 49 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 50 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit'
ok 51 - An object of class 'Bio::MAGE::Measurement::ConcentrationUnit' isa 'Bio::MAGE::Measurement::Unit'
ok
t/ConfidenceIndicator.t ..........
1..190
ok 1 - use Bio::MAGE::QuantitationType::ConfidenceIndicator;
ok 2 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator'
ok 3 - package
ok 4 - class_name
ok 5 - isBackground new
ok 6 - isBackground getter/setter
ok 7 - isBackground getter throws exception with argument
ok 8 - isBackground setter throws exception with no argument
ok 9 - isBackground setter throws exception with too many argument
ok 10 - isBackground setter accepts undef
ok 11 - identifier new
ok 12 - identifier getter/setter
ok 13 - identifier getter throws exception with argument
ok 14 - identifier setter throws exception with no argument
ok 15 - identifier setter throws exception with too many argument
ok 16 - identifier setter accepts undef
ok 17 - name new
ok 18 - name getter/setter
ok 19 - name getter throws exception with argument
ok 20 - name setter throws exception with no argument
ok 21 - name setter throws exception with too many argument
ok 22 - name setter accepts undef
ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 24 - setDataType returns value
ok 25 - getDataType fetches correct value
ok 26 - setDataType throws exception with bad argument
ok 27 - getDataType throws exception with argument
ok 28 - setDataType throws exception with no argument
ok 29 - setDataType throws exception with too many argument
ok 30 - setDataType accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - dataType->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - dataType->self() is a valid Bio::MAGE::Association::End
ok 36 - auditTrail set in new()
ok 37 - setAuditTrail returns correct value
ok 38 - getAuditTrail fetches correct value
ok 39 - addAuditTrail returns number of items in list
ok 40 - addAuditTrail adds correct value
ok 41 - setAuditTrail throws exception with non-array argument
ok 42 - setAuditTrail throws exception with bad argument array
ok 43 - addAuditTrail throws exception with no arguments
ok 44 - addAuditTrail throws exception with bad array
ok 45 - setAuditTrail accepts empty array ref
ok 46 - getAuditTrail throws exception with argument
ok 47 - setAuditTrail throws exception with no argument
ok 48 - setAuditTrail throws exception with too many argument
ok 49 - setAuditTrail accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 55 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel'
ok 56 - setChannel returns value
ok 57 - getChannel fetches correct value
ok 58 - setChannel throws exception with bad argument
ok 59 - getChannel throws exception with argument
ok 60 - setChannel throws exception with no argument
ok 61 - setChannel throws exception with too many argument
ok 62 - setChannel accepts undef
ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 65 - channel->other() is a valid Bio::MAGE::Association::End
ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 67 - channel->self() is a valid Bio::MAGE::Association::End
ok 68 - propertySets set in new()
ok 69 - setPropertySets returns correct value
ok 70 - getPropertySets fetches correct value
ok 71 - addPropertySets returns number of items in list
ok 72 - addPropertySets adds correct value
ok 73 - setPropertySets throws exception with non-array argument
ok 74 - setPropertySets throws exception with bad argument array
ok 75 - addPropertySets throws exception with no arguments
ok 76 - addPropertySets throws exception with bad array
ok 77 - setPropertySets accepts empty array ref
ok 78 - getPropertySets throws exception with argument
ok 79 - setPropertySets throws exception with no argument
ok 80 - setPropertySets throws exception with too many argument
ok 81 - setPropertySets accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 87 - confidenceIndicators set in new()
ok 88 - setConfidenceIndicators returns correct value
ok 89 - getConfidenceIndicators fetches correct value
ok 90 - addConfidenceIndicators returns number of items in list
ok 91 - addConfidenceIndicators adds correct value
ok 92 - setConfidenceIndicators throws exception with non-array argument
ok 93 - setConfidenceIndicators throws exception with bad argument array
ok 94 - addConfidenceIndicators throws exception with no arguments
ok 95 - addConfidenceIndicators throws exception with bad array
ok 96 - setConfidenceIndicators accepts empty array ref
ok 97 - getConfidenceIndicators throws exception with argument
ok 98 - setConfidenceIndicators throws exception with no argument
ok 99 - setConfidenceIndicators throws exception with too many argument
ok 100 - setConfidenceIndicators accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End
ok 106 - descriptions set in new()
ok 107 - setDescriptions returns correct value
ok 108 - getDescriptions fetches correct value
ok 109 - addDescriptions returns number of items in list
ok 110 - addDescriptions adds correct value
ok 111 - setDescriptions throws exception with non-array argument
ok 112 - setDescriptions throws exception with bad argument array
ok 113 - addDescriptions throws exception with no arguments
ok 114 - addDescriptions throws exception with bad array
ok 115 - setDescriptions accepts empty array ref
ok 116 - getDescriptions throws exception with argument
ok 117 - setDescriptions throws exception with no argument
ok 118 - setDescriptions throws exception with too many argument
ok 119 - setDescriptions accepts undef
ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 122 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 124 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 125 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 126 - setSecurity returns value
ok 127 - getSecurity fetches correct value
ok 128 - setSecurity throws exception with bad argument
ok 129 - getSecurity throws exception with argument
ok 130 - setSecurity throws exception with no argument
ok 131 - setSecurity throws exception with too many argument
ok 132 - setSecurity accepts undef
ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 135 - security->other() is a valid Bio::MAGE::Association::End
ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 137 - security->self() is a valid Bio::MAGE::Association::End
ok 138 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 139 - setScale returns value
ok 140 - getScale fetches correct value
ok 141 - setScale throws exception with bad argument
ok 142 - getScale throws exception with argument
ok 143 - setScale throws exception with no argument
ok 144 - setScale throws exception with too many argument
ok 145 - setScale accepts undef
ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 148 - scale->other() is a valid Bio::MAGE::Association::End
ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 150 - scale->self() is a valid Bio::MAGE::Association::End
ok 151 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType'
ok 152 - setTargetQuantitationType returns value
ok 153 - getTargetQuantitationType fetches correct value
ok 154 - setTargetQuantitationType throws exception with bad argument
ok 155 - getTargetQuantitationType throws exception with argument
ok 156 - setTargetQuantitationType throws exception with no argument
ok 157 - setTargetQuantitationType throws exception with too many argument
ok 158 - setTargetQuantitationType accepts undef
ok 159 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 161 - targetQuantitationType->other() is a valid Bio::MAGE::Association::End
ok 162 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 163 - targetQuantitationType->self() is a valid Bio::MAGE::Association::End
ok 164 - quantitationTypeMaps set in new()
ok 165 - setQuantitationTypeMaps returns correct value
ok 166 - getQuantitationTypeMaps fetches correct value
ok 167 - addQuantitationTypeMaps returns number of items in list
ok 168 - addQuantitationTypeMaps adds correct value
ok 169 - setQuantitationTypeMaps throws exception with non-array argument
ok 170 - setQuantitationTypeMaps throws exception with bad argument array
ok 171 - addQuantitationTypeMaps throws exception with no arguments
ok 172 - addQuantitationTypeMaps throws exception with bad array
ok 173 - setQuantitationTypeMaps accepts empty array ref
ok 174 - getQuantitationTypeMaps throws exception with argument
ok 175 - setQuantitationTypeMaps throws exception with no argument
ok 176 - setQuantitationTypeMaps throws exception with too many argument
ok 177 - setQuantitationTypeMaps accepts undef
ok 178 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 179 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 180 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End
ok 181 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 182 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End
ok 183 - An object of class 'Bio::MAGE::QuantitationType::Error' isa 'Bio::MAGE::QuantitationType::Error'
ok 184 - An object of class 'Bio::MAGE::QuantitationType::Error' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator'
ok 185 - An object of class 'Bio::MAGE::QuantitationType::PValue' isa 'Bio::MAGE::QuantitationType::PValue'
ok 186 - An object of class 'Bio::MAGE::QuantitationType::PValue' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator'
ok 187 - An object of class 'Bio::MAGE::QuantitationType::ExpectedValue' isa 'Bio::MAGE::QuantitationType::ExpectedValue'
ok 188 - An object of class 'Bio::MAGE::QuantitationType::ExpectedValue' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator'
ok 189 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType'
ok 190 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType'
ok
t/Contact.t ......................
1..147
ok 1 - use Bio::MAGE::AuditAndSecurity::Contact;
ok 2 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::AuditAndSecurity::Contact'
ok 3 - package
ok 4 - class_name
ok 5 - email new
ok 6 - email getter/setter
ok 7 - email getter throws exception with argument
ok 8 - email setter throws exception with no argument
ok 9 - email setter throws exception with too many argument
ok 10 - email setter accepts undef
ok 11 - URI new
ok 12 - URI getter/setter
ok 13 - URI getter throws exception with argument
ok 14 - URI setter throws exception with no argument
ok 15 - URI setter throws exception with too many argument
ok 16 - URI setter accepts undef
ok 17 - identifier new
ok 18 - identifier getter/setter
ok 19 - identifier getter throws exception with argument
ok 20 - identifier setter throws exception with no argument
ok 21 - identifier setter throws exception with too many argument
ok 22 - identifier setter accepts undef
ok 23 - tollFreePhone new
ok 24 - tollFreePhone getter/setter
ok 25 - tollFreePhone getter throws exception with argument
ok 26 - tollFreePhone setter throws exception with no argument
ok 27 - tollFreePhone setter throws exception with too many argument
ok 28 - tollFreePhone setter accepts undef
ok 29 - fax new
ok 30 - fax getter/setter
ok 31 - fax getter throws exception with argument
ok 32 - fax setter throws exception with no argument
ok 33 - fax setter throws exception with too many argument
ok 34 - fax setter accepts undef
ok 35 - name new
ok 36 - name getter/setter
ok 37 - name getter throws exception with argument
ok 38 - name setter throws exception with no argument
ok 39 - name setter throws exception with too many argument
ok 40 - name setter accepts undef
ok 41 - address new
ok 42 - address getter/setter
ok 43 - address getter throws exception with argument
ok 44 - address setter throws exception with no argument
ok 45 - address setter throws exception with too many argument
ok 46 - address setter accepts undef
ok 47 - phone new
ok 48 - phone getter/setter
ok 49 - phone getter throws exception with argument
ok 50 - phone setter throws exception with no argument
ok 51 - phone setter throws exception with too many argument
ok 52 - phone setter accepts undef
ok 53 - roles set in new()
ok 54 - setRoles returns correct value
ok 55 - getRoles fetches correct value
ok 56 - addRoles returns number of items in list
ok 57 - addRoles adds correct value
ok 58 - setRoles throws exception with non-array argument
ok 59 - setRoles throws exception with bad argument array
ok 60 - addRoles throws exception with no arguments
ok 61 - addRoles throws exception with bad array
ok 62 - setRoles accepts empty array ref
ok 63 - getRoles throws exception with argument
ok 64 - setRoles throws exception with no argument
ok 65 - setRoles throws exception with too many argument
ok 66 - setRoles accepts undef
ok 67 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 68 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 69 - roles->other() is a valid Bio::MAGE::Association::End
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - roles->self() is a valid Bio::MAGE::Association::End
ok 72 - descriptions set in new()
ok 73 - setDescriptions returns correct value
ok 74 - getDescriptions fetches correct value
ok 75 - addDescriptions returns number of items in list
ok 76 - addDescriptions adds correct value
ok 77 - setDescriptions throws exception with non-array argument
ok 78 - setDescriptions throws exception with bad argument array
ok 79 - addDescriptions throws exception with no arguments
ok 80 - addDescriptions throws exception with bad array
ok 81 - setDescriptions accepts empty array ref
ok 82 - getDescriptions throws exception with argument
ok 83 - setDescriptions throws exception with no argument
ok 84 - setDescriptions throws exception with too many argument
ok 85 - setDescriptions accepts undef
ok 86 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 87 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 88 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 90 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 91 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 92 - setSecurity returns value
ok 93 - getSecurity fetches correct value
ok 94 - setSecurity throws exception with bad argument
ok 95 - getSecurity throws exception with argument
ok 96 - setSecurity throws exception with no argument
ok 97 - setSecurity throws exception with too many argument
ok 98 - setSecurity accepts undef
ok 99 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 100 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 101 - security->other() is a valid Bio::MAGE::Association::End
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - security->self() is a valid Bio::MAGE::Association::End
ok 104 - auditTrail set in new()
ok 105 - setAuditTrail returns correct value
ok 106 - getAuditTrail fetches correct value
ok 107 - addAuditTrail returns number of items in list
ok 108 - addAuditTrail adds correct value
ok 109 - setAuditTrail throws exception with non-array argument
ok 110 - setAuditTrail throws exception with bad argument array
ok 111 - addAuditTrail throws exception with no arguments
ok 112 - addAuditTrail throws exception with bad array
ok 113 - setAuditTrail accepts empty array ref
ok 114 - getAuditTrail throws exception with argument
ok 115 - setAuditTrail throws exception with no argument
ok 116 - setAuditTrail throws exception with too many argument
ok 117 - setAuditTrail accepts undef
ok 118 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 119 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 120 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 122 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 123 - propertySets set in new()
ok 124 - setPropertySets returns correct value
ok 125 - getPropertySets fetches correct value
ok 126 - addPropertySets returns number of items in list
ok 127 - addPropertySets adds correct value
ok 128 - setPropertySets throws exception with non-array argument
ok 129 - setPropertySets throws exception with bad argument array
ok 130 - addPropertySets throws exception with no arguments
ok 131 - addPropertySets throws exception with bad array
ok 132 - setPropertySets accepts empty array ref
ok 133 - getPropertySets throws exception with argument
ok 134 - setPropertySets throws exception with no argument
ok 135 - setPropertySets throws exception with too many argument
ok 136 - setPropertySets accepts undef
ok 137 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 138 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 139 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 141 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 142 - An object of class 'Bio::MAGE::AuditAndSecurity::Person' isa 'Bio::MAGE::AuditAndSecurity::Person'
ok 143 - An object of class 'Bio::MAGE::AuditAndSecurity::Person' isa 'Bio::MAGE::AuditAndSecurity::Contact'
ok 144 - An object of class 'Bio::MAGE::AuditAndSecurity::Organization' isa 'Bio::MAGE::AuditAndSecurity::Organization'
ok 145 - An object of class 'Bio::MAGE::AuditAndSecurity::Organization' isa 'Bio::MAGE::AuditAndSecurity::Contact'
ok 146 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 147 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::Identifiable'
ok
t/Database.t .....................
1..119
ok 1 - use Bio::MAGE::Description::Database;
ok 2 - An object of class 'Bio::MAGE::Description::Database' isa 'Bio::MAGE::Description::Database'
ok 3 - package
ok 4 - class_name
ok 5 - URI new
ok 6 - URI getter/setter
ok 7 - URI getter throws exception with argument
ok 8 - URI setter throws exception with no argument
ok 9 - URI setter throws exception with too many argument
ok 10 - URI setter accepts undef
ok 11 - identifier new
ok 12 - identifier getter/setter
ok 13 - identifier getter throws exception with argument
ok 14 - identifier setter throws exception with no argument
ok 15 - identifier setter throws exception with too many argument
ok 16 - identifier setter accepts undef
ok 17 - version new
ok 18 - version getter/setter
ok 19 - version getter throws exception with argument
ok 20 - version setter throws exception with no argument
ok 21 - version setter throws exception with too many argument
ok 22 - version setter accepts undef
ok 23 - name new
ok 24 - name getter/setter
ok 25 - name getter throws exception with argument
ok 26 - name setter throws exception with no argument
ok 27 - name setter throws exception with too many argument
ok 28 - name setter accepts undef
ok 29 - contacts set in new()
ok 30 - setContacts returns correct value
ok 31 - getContacts fetches correct value
ok 32 - addContacts returns number of items in list
ok 33 - addContacts adds correct value
ok 34 - setContacts throws exception with non-array argument
ok 35 - setContacts throws exception with bad argument array
ok 36 - addContacts throws exception with no arguments
ok 37 - addContacts throws exception with bad array
ok 38 - setContacts accepts empty array ref
ok 39 - getContacts throws exception with argument
ok 40 - setContacts throws exception with no argument
ok 41 - setContacts throws exception with too many argument
ok 42 - setContacts accepts undef
ok 43 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 45 - contacts->other() is a valid Bio::MAGE::Association::End
ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 47 - contacts->self() is a valid Bio::MAGE::Association::End
ok 48 - descriptions set in new()
ok 49 - setDescriptions returns correct value
ok 50 - getDescriptions fetches correct value
ok 51 - addDescriptions returns number of items in list
ok 52 - addDescriptions adds correct value
ok 53 - setDescriptions throws exception with non-array argument
ok 54 - setDescriptions throws exception with bad argument array
ok 55 - addDescriptions throws exception with no arguments
ok 56 - addDescriptions throws exception with bad array
ok 57 - setDescriptions accepts empty array ref
ok 58 - getDescriptions throws exception with argument
ok 59 - setDescriptions throws exception with no argument
ok 60 - setDescriptions throws exception with too many argument
ok 61 - setDescriptions accepts undef
ok 62 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 63 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 64 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 66 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 67 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 68 - setSecurity returns value
ok 69 - getSecurity fetches correct value
ok 70 - setSecurity throws exception with bad argument
ok 71 - getSecurity throws exception with argument
ok 72 - setSecurity throws exception with no argument
ok 73 - setSecurity throws exception with too many argument
ok 74 - setSecurity accepts undef
ok 75 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 76 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 77 - security->other() is a valid Bio::MAGE::Association::End
ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 79 - security->self() is a valid Bio::MAGE::Association::End
ok 80 - auditTrail set in new()
ok 81 - setAuditTrail returns correct value
ok 82 - getAuditTrail fetches correct value
ok 83 - addAuditTrail returns number of items in list
ok 84 - addAuditTrail adds correct value
ok 85 - setAuditTrail throws exception with non-array argument
ok 86 - setAuditTrail throws exception with bad argument array
ok 87 - addAuditTrail throws exception with no arguments
ok 88 - addAuditTrail throws exception with bad array
ok 89 - setAuditTrail accepts empty array ref
ok 90 - getAuditTrail throws exception with argument
ok 91 - setAuditTrail throws exception with no argument
ok 92 - setAuditTrail throws exception with too many argument
ok 93 - setAuditTrail accepts undef
ok 94 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 95 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 96 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 98 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 99 - propertySets set in new()
ok 100 - setPropertySets returns correct value
ok 101 - getPropertySets fetches correct value
ok 102 - addPropertySets returns number of items in list
ok 103 - addPropertySets adds correct value
ok 104 - setPropertySets throws exception with non-array argument
ok 105 - setPropertySets throws exception with bad argument array
ok 106 - addPropertySets throws exception with no arguments
ok 107 - addPropertySets throws exception with bad array
ok 108 - setPropertySets accepts empty array ref
ok 109 - getPropertySets throws exception with argument
ok 110 - setPropertySets throws exception with no argument
ok 111 - setPropertySets throws exception with too many argument
ok 112 - setPropertySets accepts undef
ok 113 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 114 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 115 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 117 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 118 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 119 - An object of class 'Bio::MAGE::Description::Database' isa 'Bio::MAGE::Identifiable'
ok
t/DatabaseEntry.t ................
1..69
ok 1 - use Bio::MAGE::Description::DatabaseEntry;
ok 2 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Description::DatabaseEntry'
ok 3 - package
ok 4 - class_name
ok 5 - accessionVersion new
ok 6 - accessionVersion getter/setter
ok 7 - accessionVersion getter throws exception with argument
ok 8 - accessionVersion setter throws exception with no argument
ok 9 - accessionVersion setter throws exception with too many argument
ok 10 - accessionVersion setter accepts undef
ok 11 - URI new
ok 12 - URI getter/setter
ok 13 - URI getter throws exception with argument
ok 14 - URI setter throws exception with no argument
ok 15 - URI setter throws exception with too many argument
ok 16 - URI setter accepts undef
ok 17 - accession new
ok 18 - accession getter/setter
ok 19 - accession getter throws exception with argument
ok 20 - accession setter throws exception with no argument
ok 21 - accession setter throws exception with too many argument
ok 22 - accession setter accepts undef
ok 23 - An object of class 'Bio::MAGE::Description::Database' isa 'Bio::MAGE::Description::Database'
ok 24 - setDatabase returns value
ok 25 - getDatabase fetches correct value
ok 26 - setDatabase throws exception with bad argument
ok 27 - getDatabase throws exception with argument
ok 28 - setDatabase throws exception with no argument
ok 29 - setDatabase throws exception with too many argument
ok 30 - setDatabase accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - database->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - database->self() is a valid Bio::MAGE::Association::End
ok 36 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 37 - setType returns value
ok 38 - getType fetches correct value
ok 39 - setType throws exception with bad argument
ok 40 - getType throws exception with argument
ok 41 - setType throws exception with no argument
ok 42 - setType throws exception with too many argument
ok 43 - setType accepts undef
ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 46 - type->other() is a valid Bio::MAGE::Association::End
ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 48 - type->self() is a valid Bio::MAGE::Association::End
ok 49 - propertySets set in new()
ok 50 - setPropertySets returns correct value
ok 51 - getPropertySets fetches correct value
ok 52 - addPropertySets returns number of items in list
ok 53 - addPropertySets adds correct value
ok 54 - setPropertySets throws exception with non-array argument
ok 55 - setPropertySets throws exception with bad argument array
ok 56 - addPropertySets throws exception with no arguments
ok 57 - addPropertySets throws exception with bad array
ok 58 - setPropertySets accepts empty array ref
ok 59 - getPropertySets throws exception with argument
ok 60 - setPropertySets throws exception with no argument
ok 61 - setPropertySets throws exception with too many argument
ok 62 - setPropertySets accepts undef
ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 65 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 67 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 68 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable'
ok 69 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Extendable'
ok
t/DerivedBioAssay.t ..............
1..177
ok 1 - use Bio::MAGE::BioAssay::DerivedBioAssay;
ok 2 - An object of class 'Bio::MAGE::BioAssay::DerivedBioAssay' isa 'Bio::MAGE::BioAssay::DerivedBioAssay'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - channels set in new()
ok 18 - setChannels returns correct value
ok 19 - getChannels fetches correct value
ok 20 - addChannels returns number of items in list
ok 21 - addChannels adds correct value
ok 22 - setChannels throws exception with non-array argument
ok 23 - setChannels throws exception with bad argument array
ok 24 - addChannels throws exception with no arguments
ok 25 - addChannels throws exception with bad array
ok 26 - setChannels accepts empty array ref
ok 27 - getChannels throws exception with argument
ok 28 - setChannels throws exception with no argument
ok 29 - setChannels throws exception with too many argument
ok 30 - setChannels accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - channels->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - channels->self() is a valid Bio::MAGE::Association::End
ok 36 - auditTrail set in new()
ok 37 - setAuditTrail returns correct value
ok 38 - getAuditTrail fetches correct value
ok 39 - addAuditTrail returns number of items in list
ok 40 - addAuditTrail adds correct value
ok 41 - setAuditTrail throws exception with non-array argument
ok 42 - setAuditTrail throws exception with bad argument array
ok 43 - addAuditTrail throws exception with no arguments
ok 44 - addAuditTrail throws exception with bad array
ok 45 - setAuditTrail accepts empty array ref
ok 46 - getAuditTrail throws exception with argument
ok 47 - setAuditTrail throws exception with no argument
ok 48 - setAuditTrail throws exception with too many argument
ok 49 - setAuditTrail accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 55 - propertySets set in new()
ok 56 - setPropertySets returns correct value
ok 57 - getPropertySets fetches correct value
ok 58 - addPropertySets returns number of items in list
ok 59 - addPropertySets adds correct value
ok 60 - setPropertySets throws exception with non-array argument
ok 61 - setPropertySets throws exception with bad argument array
ok 62 - addPropertySets throws exception with no arguments
ok 63 - addPropertySets throws exception with bad array
ok 64 - setPropertySets accepts empty array ref
ok 65 - getPropertySets throws exception with argument
ok 66 - setPropertySets throws exception with no argument
ok 67 - setPropertySets throws exception with too many argument
ok 68 - setPropertySets accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 74 - bioAssayFactorValues set in new()
ok 75 - setBioAssayFactorValues returns correct value
ok 76 - getBioAssayFactorValues fetches correct value
ok 77 - addBioAssayFactorValues returns number of items in list
ok 78 - addBioAssayFactorValues adds correct value
ok 79 - setBioAssayFactorValues throws exception with non-array argument
ok 80 - setBioAssayFactorValues throws exception with bad argument array
ok 81 - addBioAssayFactorValues throws exception with no arguments
ok 82 - addBioAssayFactorValues throws exception with bad array
ok 83 - setBioAssayFactorValues accepts empty array ref
ok 84 - getBioAssayFactorValues throws exception with argument
ok 85 - setBioAssayFactorValues throws exception with no argument
ok 86 - setBioAssayFactorValues throws exception with too many argument
ok 87 - setBioAssayFactorValues accepts undef
ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 90 - bioAssayFactorValues->other() is a valid Bio::MAGE::Association::End
ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 92 - bioAssayFactorValues->self() is a valid Bio::MAGE::Association::End
ok 93 - descriptions set in new()
ok 94 - setDescriptions returns correct value
ok 95 - getDescriptions fetches correct value
ok 96 - addDescriptions returns number of items in list
ok 97 - addDescriptions adds correct value
ok 98 - setDescriptions throws exception with non-array argument
ok 99 - setDescriptions throws exception with bad argument array
ok 100 - addDescriptions throws exception with no arguments
ok 101 - addDescriptions throws exception with bad array
ok 102 - setDescriptions accepts empty array ref
ok 103 - getDescriptions throws exception with argument
ok 104 - setDescriptions throws exception with no argument
ok 105 - setDescriptions throws exception with too many argument
ok 106 - setDescriptions accepts undef
ok 107 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 108 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 109 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 111 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 112 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 113 - setSecurity returns value
ok 114 - getSecurity fetches correct value
ok 115 - setSecurity throws exception with bad argument
ok 116 - getSecurity throws exception with argument
ok 117 - setSecurity throws exception with no argument
ok 118 - setSecurity throws exception with too many argument
ok 119 - setSecurity accepts undef
ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 122 - security->other() is a valid Bio::MAGE::Association::End
ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 124 - security->self() is a valid Bio::MAGE::Association::End
ok 125 - derivedBioAssayMap set in new()
ok 126 - setDerivedBioAssayMap returns correct value
ok 127 - getDerivedBioAssayMap fetches correct value
ok 128 - addDerivedBioAssayMap returns number of items in list
ok 129 - addDerivedBioAssayMap adds correct value
ok 130 - setDerivedBioAssayMap throws exception with non-array argument
ok 131 - setDerivedBioAssayMap throws exception with bad argument array
ok 132 - addDerivedBioAssayMap throws exception with no arguments
ok 133 - addDerivedBioAssayMap throws exception with bad array
ok 134 - setDerivedBioAssayMap accepts empty array ref
ok 135 - getDerivedBioAssayMap throws exception with argument
ok 136 - setDerivedBioAssayMap throws exception with no argument
ok 137 - setDerivedBioAssayMap throws exception with too many argument
ok 138 - setDerivedBioAssayMap accepts undef
ok 139 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 141 - derivedBioAssayMap->other() is a valid Bio::MAGE::Association::End
ok 142 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 143 - derivedBioAssayMap->self() is a valid Bio::MAGE::Association::End
ok 144 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 145 - setType returns value
ok 146 - getType fetches correct value
ok 147 - setType throws exception with bad argument
ok 148 - getType throws exception with argument
ok 149 - setType throws exception with no argument
ok 150 - setType throws exception with too many argument
ok 151 - setType accepts undef
ok 152 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 154 - type->other() is a valid Bio::MAGE::Association::End
ok 155 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 156 - type->self() is a valid Bio::MAGE::Association::End
ok 157 - derivedBioAssayData set in new()
ok 158 - setDerivedBioAssayData returns correct value
ok 159 - getDerivedBioAssayData fetches correct value
ok 160 - addDerivedBioAssayData returns number of items in list
ok 161 - addDerivedBioAssayData adds correct value
ok 162 - setDerivedBioAssayData throws exception with non-array argument
ok 163 - setDerivedBioAssayData throws exception with bad argument array
ok 164 - addDerivedBioAssayData throws exception with no arguments
ok 165 - addDerivedBioAssayData throws exception with bad array
ok 166 - setDerivedBioAssayData accepts empty array ref
ok 167 - getDerivedBioAssayData throws exception with argument
ok 168 - setDerivedBioAssayData throws exception with no argument
ok 169 - setDerivedBioAssayData throws exception with too many argument
ok 170 - setDerivedBioAssayData accepts undef
ok 171 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 172 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 173 - derivedBioAssayData->other() is a valid Bio::MAGE::Association::End
ok 174 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 175 - derivedBioAssayData->self() is a valid Bio::MAGE::Association::End
ok 176 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::BioAssay::BioAssay'
ok 177 - An object of class 'Bio::MAGE::BioAssay::DerivedBioAssay' isa 'Bio::MAGE::BioAssay::BioAssay'
ok
t/DerivedBioAssayData.t ..........
1..172
ok 1 - use Bio::MAGE::BioAssayData::DerivedBioAssayData;
ok 2 - An object of class 'Bio::MAGE::BioAssayData::DerivedBioAssayData' isa 'Bio::MAGE::BioAssayData::DerivedBioAssayData'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - An object of class 'Bio::MAGE::BioAssayData::Transformation' isa 'Bio::MAGE::BioAssayData::Transformation'
ok 18 - setProducerTransformation returns value
ok 19 - getProducerTransformation fetches correct value
ok 20 - setProducerTransformation throws exception with bad argument
ok 21 - getProducerTransformation throws exception with argument
ok 22 - setProducerTransformation throws exception with no argument
ok 23 - setProducerTransformation throws exception with too many argument
ok 24 - setProducerTransformation accepts undef
ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 27 - producerTransformation->other() is a valid Bio::MAGE::Association::End
ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 29 - producerTransformation->self() is a valid Bio::MAGE::Association::End
ok 30 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::BioAssayData::BioAssayDimension'
ok 31 - setBioAssayDimension returns value
ok 32 - getBioAssayDimension fetches correct value
ok 33 - setBioAssayDimension throws exception with bad argument
ok 34 - getBioAssayDimension throws exception with argument
ok 35 - setBioAssayDimension throws exception with no argument
ok 36 - setBioAssayDimension throws exception with too many argument
ok 37 - setBioAssayDimension accepts undef
ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 40 - bioAssayDimension->other() is a valid Bio::MAGE::Association::End
ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 42 - bioAssayDimension->self() is a valid Bio::MAGE::Association::End
ok 43 - auditTrail set in new()
ok 44 - setAuditTrail returns correct value
ok 45 - getAuditTrail fetches correct value
ok 46 - addAuditTrail returns number of items in list
ok 47 - addAuditTrail adds correct value
ok 48 - setAuditTrail throws exception with non-array argument
ok 49 - setAuditTrail throws exception with bad argument array
ok 50 - addAuditTrail throws exception with no arguments
ok 51 - addAuditTrail throws exception with bad array
ok 52 - setAuditTrail accepts empty array ref
ok 53 - getAuditTrail throws exception with argument
ok 54 - setAuditTrail throws exception with no argument
ok 55 - setAuditTrail throws exception with too many argument
ok 56 - setAuditTrail accepts undef
ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 59 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 61 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 62 - propertySets set in new()
ok 63 - setPropertySets returns correct value
ok 64 - getPropertySets fetches correct value
ok 65 - addPropertySets returns number of items in list
ok 66 - addPropertySets adds correct value
ok 67 - setPropertySets throws exception with non-array argument
ok 68 - setPropertySets throws exception with bad argument array
ok 69 - addPropertySets throws exception with no arguments
ok 70 - addPropertySets throws exception with bad array
ok 71 - setPropertySets accepts empty array ref
ok 72 - getPropertySets throws exception with argument
ok 73 - setPropertySets throws exception with no argument
ok 74 - setPropertySets throws exception with too many argument
ok 75 - setPropertySets accepts undef
ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 78 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 80 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 81 - summaryStatistics set in new()
ok 82 - setSummaryStatistics returns correct value
ok 83 - getSummaryStatistics fetches correct value
ok 84 - addSummaryStatistics returns number of items in list
ok 85 - addSummaryStatistics adds correct value
ok 86 - setSummaryStatistics throws exception with non-array argument
ok 87 - setSummaryStatistics throws exception with bad argument array
ok 88 - addSummaryStatistics throws exception with no arguments
ok 89 - addSummaryStatistics throws exception with bad array
ok 90 - setSummaryStatistics accepts empty array ref
ok 91 - getSummaryStatistics throws exception with argument
ok 92 - setSummaryStatistics throws exception with no argument
ok 93 - setSummaryStatistics throws exception with too many argument
ok 94 - setSummaryStatistics accepts undef
ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 97 - summaryStatistics->other() is a valid Bio::MAGE::Association::End
ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 99 - summaryStatistics->self() is a valid Bio::MAGE::Association::End
ok 100 - descriptions set in new()
ok 101 - setDescriptions returns correct value
ok 102 - getDescriptions fetches correct value
ok 103 - addDescriptions returns number of items in list
ok 104 - addDescriptions adds correct value
ok 105 - setDescriptions throws exception with non-array argument
ok 106 - setDescriptions throws exception with bad argument array
ok 107 - addDescriptions throws exception with no arguments
ok 108 - addDescriptions throws exception with bad array
ok 109 - setDescriptions accepts empty array ref
ok 110 - getDescriptions throws exception with argument
ok 111 - setDescriptions throws exception with no argument
ok 112 - setDescriptions throws exception with too many argument
ok 113 - setDescriptions accepts undef
ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 116 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 118 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 119 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension'
ok 120 - setDesignElementDimension returns value
ok 121 - getDesignElementDimension fetches correct value
ok 122 - setDesignElementDimension throws exception with bad argument
ok 123 - getDesignElementDimension throws exception with argument
ok 124 - setDesignElementDimension throws exception with no argument
ok 125 - setDesignElementDimension throws exception with too many argument
ok 126 - setDesignElementDimension accepts undef
ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 129 - designElementDimension->other() is a valid Bio::MAGE::Association::End
ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 131 - designElementDimension->self() is a valid Bio::MAGE::Association::End
ok 132 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::BioAssayData::QuantitationTypeDimension'
ok 133 - setQuantitationTypeDimension returns value
ok 134 - getQuantitationTypeDimension fetches correct value
ok 135 - setQuantitationTypeDimension throws exception with bad argument
ok 136 - getQuantitationTypeDimension throws exception with argument
ok 137 - setQuantitationTypeDimension throws exception with no argument
ok 138 - setQuantitationTypeDimension throws exception with too many argument
ok 139 - setQuantitationTypeDimension accepts undef
ok 140 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 141 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 142 - quantitationTypeDimension->other() is a valid Bio::MAGE::Association::End
ok 143 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 144 - quantitationTypeDimension->self() is a valid Bio::MAGE::Association::End
ok 145 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 146 - setSecurity returns value
ok 147 - getSecurity fetches correct value
ok 148 - setSecurity throws exception with bad argument
ok 149 - getSecurity throws exception with argument
ok 150 - setSecurity throws exception with no argument
ok 151 - setSecurity throws exception with too many argument
ok 152 - setSecurity accepts undef
ok 153 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 155 - security->other() is a valid Bio::MAGE::Association::End
ok 156 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 157 - security->self() is a valid Bio::MAGE::Association::End
ok 158 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues'
ok 159 - setBioDataValues returns value
ok 160 - getBioDataValues fetches correct value
ok 161 - setBioDataValues throws exception with bad argument
ok 162 - getBioDataValues throws exception with argument
ok 163 - setBioDataValues throws exception with no argument
ok 164 - setBioDataValues throws exception with too many argument
ok 165 - setBioDataValues accepts undef
ok 166 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 167 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 168 - bioDataValues->other() is a valid Bio::MAGE::Association::End
ok 169 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 170 - bioDataValues->self() is a valid Bio::MAGE::Association::End
ok 171 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData'
ok 172 - An object of class 'Bio::MAGE::BioAssayData::DerivedBioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData'
ok
t/DerivedSignal.t ................
1..171
ok 1 - use Bio::MAGE::QuantitationType::DerivedSignal;
ok 2 - An object of class 'Bio::MAGE::QuantitationType::DerivedSignal' isa 'Bio::MAGE::QuantitationType::DerivedSignal'
ok 3 - package
ok 4 - class_name
ok 5 - isBackground new
ok 6 - isBackground getter/setter
ok 7 - isBackground getter throws exception with argument
ok 8 - isBackground setter throws exception with no argument
ok 9 - isBackground setter throws exception with too many argument
ok 10 - isBackground setter accepts undef
ok 11 - identifier new
ok 12 - identifier getter/setter
ok 13 - identifier getter throws exception with argument
ok 14 - identifier setter throws exception with no argument
ok 15 - identifier setter throws exception with too many argument
ok 16 - identifier setter accepts undef
ok 17 - name new
ok 18 - name getter/setter
ok 19 - name getter throws exception with argument
ok 20 - name setter throws exception with no argument
ok 21 - name setter throws exception with too many argument
ok 22 - name setter accepts undef
ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 24 - setDataType returns value
ok 25 - getDataType fetches correct value
ok 26 - setDataType throws exception with bad argument
ok 27 - getDataType throws exception with argument
ok 28 - setDataType throws exception with no argument
ok 29 - setDataType throws exception with too many argument
ok 30 - setDataType accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - dataType->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - dataType->self() is a valid Bio::MAGE::Association::End
ok 36 - descriptions set in new()
ok 37 - setDescriptions returns correct value
ok 38 - getDescriptions fetches correct value
ok 39 - addDescriptions returns number of items in list
ok 40 - addDescriptions adds correct value
ok 41 - setDescriptions throws exception with non-array argument
ok 42 - setDescriptions throws exception with bad argument array
ok 43 - addDescriptions throws exception with no arguments
ok 44 - addDescriptions throws exception with bad array
ok 45 - setDescriptions accepts empty array ref
ok 46 - getDescriptions throws exception with argument
ok 47 - setDescriptions throws exception with no argument
ok 48 - setDescriptions throws exception with too many argument
ok 49 - setDescriptions accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 55 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 56 - setScale returns value
ok 57 - getScale fetches correct value
ok 58 - setScale throws exception with bad argument
ok 59 - getScale throws exception with argument
ok 60 - setScale throws exception with no argument
ok 61 - setScale throws exception with too many argument
ok 62 - setScale accepts undef
ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 65 - scale->other() is a valid Bio::MAGE::Association::End
ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 67 - scale->self() is a valid Bio::MAGE::Association::End
ok 68 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 69 - setSecurity returns value
ok 70 - getSecurity fetches correct value
ok 71 - setSecurity throws exception with bad argument
ok 72 - getSecurity throws exception with argument
ok 73 - setSecurity throws exception with no argument
ok 74 - setSecurity throws exception with too many argument
ok 75 - setSecurity accepts undef
ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 78 - security->other() is a valid Bio::MAGE::Association::End
ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 80 - security->self() is a valid Bio::MAGE::Association::End
ok 81 - auditTrail set in new()
ok 82 - setAuditTrail returns correct value
ok 83 - getAuditTrail fetches correct value
ok 84 - addAuditTrail returns number of items in list
ok 85 - addAuditTrail adds correct value
ok 86 - setAuditTrail throws exception with non-array argument
ok 87 - setAuditTrail throws exception with bad argument array
ok 88 - addAuditTrail throws exception with no arguments
ok 89 - addAuditTrail throws exception with bad array
ok 90 - setAuditTrail accepts empty array ref
ok 91 - getAuditTrail throws exception with argument
ok 92 - setAuditTrail throws exception with no argument
ok 93 - setAuditTrail throws exception with too many argument
ok 94 - setAuditTrail accepts undef
ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 100 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel'
ok 101 - setChannel returns value
ok 102 - getChannel fetches correct value
ok 103 - setChannel throws exception with bad argument
ok 104 - getChannel throws exception with argument
ok 105 - setChannel throws exception with no argument
ok 106 - setChannel throws exception with too many argument
ok 107 - setChannel accepts undef
ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 110 - channel->other() is a valid Bio::MAGE::Association::End
ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 112 - channel->self() is a valid Bio::MAGE::Association::End
ok 113 - propertySets set in new()
ok 114 - setPropertySets returns correct value
ok 115 - getPropertySets fetches correct value
ok 116 - addPropertySets returns number of items in list
ok 117 - addPropertySets adds correct value
ok 118 - setPropertySets throws exception with non-array argument
ok 119 - setPropertySets throws exception with bad argument array
ok 120 - addPropertySets throws exception with no arguments
ok 121 - addPropertySets throws exception with bad array
ok 122 - setPropertySets accepts empty array ref
ok 123 - getPropertySets throws exception with argument
ok 124 - setPropertySets throws exception with no argument
ok 125 - setPropertySets throws exception with too many argument
ok 126 - setPropertySets accepts undef
ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 132 - confidenceIndicators set in new()
ok 133 - setConfidenceIndicators returns correct value
ok 134 - getConfidenceIndicators fetches correct value
ok 135 - addConfidenceIndicators returns number of items in list
ok 136 - addConfidenceIndicators adds correct value
ok 137 - setConfidenceIndicators throws exception with non-array argument
ok 138 - setConfidenceIndicators throws exception with bad argument array
ok 139 - addConfidenceIndicators throws exception with no arguments
ok 140 - addConfidenceIndicators throws exception with bad array
ok 141 - setConfidenceIndicators accepts empty array ref
ok 142 - getConfidenceIndicators throws exception with argument
ok 143 - setConfidenceIndicators throws exception with no argument
ok 144 - setConfidenceIndicators throws exception with too many argument
ok 145 - setConfidenceIndicators accepts undef
ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End
ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End
ok 151 - quantitationTypeMaps set in new()
ok 152 - setQuantitationTypeMaps returns correct value
ok 153 - getQuantitationTypeMaps fetches correct value
ok 154 - addQuantitationTypeMaps returns number of items in list
ok 155 - addQuantitationTypeMaps adds correct value
ok 156 - setQuantitationTypeMaps throws exception with non-array argument
ok 157 - setQuantitationTypeMaps throws exception with bad argument array
ok 158 - addQuantitationTypeMaps throws exception with no arguments
ok 159 - addQuantitationTypeMaps throws exception with bad array
ok 160 - setQuantitationTypeMaps accepts empty array ref
ok 161 - getQuantitationTypeMaps throws exception with argument
ok 162 - setQuantitationTypeMaps throws exception with no argument
ok 163 - setQuantitationTypeMaps throws exception with too many argument
ok 164 - setQuantitationTypeMaps accepts undef
ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End
ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End
ok 170 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType'
ok 171 - An object of class 'Bio::MAGE::QuantitationType::DerivedSignal' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType'
ok
t/Describable.t ..................
1..98
ok 1 - use Bio::MAGE::Describable;
ok 2 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable'
ok 3 - package
ok 4 - class_name
ok 5 - descriptions set in new()
ok 6 - setDescriptions returns correct value
ok 7 - getDescriptions fetches correct value
ok 8 - addDescriptions returns number of items in list
ok 9 - addDescriptions adds correct value
ok 10 - setDescriptions throws exception with non-array argument
ok 11 - setDescriptions throws exception with bad argument array
ok 12 - addDescriptions throws exception with no arguments
ok 13 - addDescriptions throws exception with bad array
ok 14 - setDescriptions accepts empty array ref
ok 15 - getDescriptions throws exception with argument
ok 16 - setDescriptions throws exception with no argument
ok 17 - setDescriptions throws exception with too many argument
ok 18 - setDescriptions accepts undef
ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 21 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 23 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 24 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 25 - setSecurity returns value
ok 26 - getSecurity fetches correct value
ok 27 - setSecurity throws exception with bad argument
ok 28 - getSecurity throws exception with argument
ok 29 - setSecurity throws exception with no argument
ok 30 - setSecurity throws exception with too many argument
ok 31 - setSecurity accepts undef
ok 32 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 33 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 34 - security->other() is a valid Bio::MAGE::Association::End
ok 35 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 36 - security->self() is a valid Bio::MAGE::Association::End
ok 37 - auditTrail set in new()
ok 38 - setAuditTrail returns correct value
ok 39 - getAuditTrail fetches correct value
ok 40 - addAuditTrail returns number of items in list
ok 41 - addAuditTrail adds correct value
ok 42 - setAuditTrail throws exception with non-array argument
ok 43 - setAuditTrail throws exception with bad argument array
ok 44 - addAuditTrail throws exception with no arguments
ok 45 - addAuditTrail throws exception with bad array
ok 46 - setAuditTrail accepts empty array ref
ok 47 - getAuditTrail throws exception with argument
ok 48 - setAuditTrail throws exception with no argument
ok 49 - setAuditTrail throws exception with too many argument
ok 50 - setAuditTrail accepts undef
ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 53 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 55 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 56 - propertySets set in new()
ok 57 - setPropertySets returns correct value
ok 58 - getPropertySets fetches correct value
ok 59 - addPropertySets returns number of items in list
ok 60 - addPropertySets adds correct value
ok 61 - setPropertySets throws exception with non-array argument
ok 62 - setPropertySets throws exception with bad argument array
ok 63 - addPropertySets throws exception with no arguments
ok 64 - addPropertySets throws exception with bad array
ok 65 - setPropertySets accepts empty array ref
ok 66 - getPropertySets throws exception with argument
ok 67 - setPropertySets throws exception with no argument
ok 68 - setPropertySets throws exception with too many argument
ok 69 - setPropertySets accepts undef
ok 70 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 72 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 73 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 74 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 75 - An object of class 'Bio::MAGE::HigherLevelAnalysis::Node' isa 'Bio::MAGE::HigherLevelAnalysis::Node'
ok 76 - An object of class 'Bio::MAGE::HigherLevelAnalysis::Node' isa 'Bio::MAGE::Describable'
ok 77 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeContents' isa 'Bio::MAGE::HigherLevelAnalysis::NodeContents'
ok 78 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeContents' isa 'Bio::MAGE::Describable'
ok 79 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Description::Description'
ok 80 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Describable'
ok 81 - An object of class 'Bio::MAGE::AuditAndSecurity::Audit' isa 'Bio::MAGE::AuditAndSecurity::Audit'
ok 82 - An object of class 'Bio::MAGE::AuditAndSecurity::Audit' isa 'Bio::MAGE::Describable'
ok 83 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 84 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Describable'
ok 85 - An object of class 'Bio::MAGE::Array::Fiducial' isa 'Bio::MAGE::Array::Fiducial'
ok 86 - An object of class 'Bio::MAGE::Array::Fiducial' isa 'Bio::MAGE::Describable'
ok 87 - An object of class 'Bio::MAGE::BQS::BibliographicReference' isa 'Bio::MAGE::BQS::BibliographicReference'
ok 88 - An object of class 'Bio::MAGE::BQS::BibliographicReference' isa 'Bio::MAGE::Describable'
ok 89 - An object of class 'Bio::MAGE::Experiment::ExperimentDesign' isa 'Bio::MAGE::Experiment::ExperimentDesign'
ok 90 - An object of class 'Bio::MAGE::Experiment::ExperimentDesign' isa 'Bio::MAGE::Describable'
ok 91 - An object of class 'Bio::MAGE::Array::ManufactureLIMS' isa 'Bio::MAGE::Array::ManufactureLIMS'
ok 92 - An object of class 'Bio::MAGE::Array::ManufactureLIMS' isa 'Bio::MAGE::Describable'
ok 93 - An object of class 'Bio::MAGE::BioSequence::SeqFeature' isa 'Bio::MAGE::BioSequence::SeqFeature'
ok 94 - An object of class 'Bio::MAGE::BioSequence::SeqFeature' isa 'Bio::MAGE::Describable'
ok 95 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication'
ok 96 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Describable'
ok 97 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable'
ok 98 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Extendable'
ok
t/Description.t ..................
1..158
ok 1 - use Bio::MAGE::Description::Description;
ok 2 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Description::Description'
ok 3 - package
ok 4 - class_name
ok 5 - URI new
ok 6 - URI getter/setter
ok 7 - URI getter throws exception with argument
ok 8 - URI setter throws exception with no argument
ok 9 - URI setter throws exception with too many argument
ok 10 - URI setter accepts undef
ok 11 - text new
ok 12 - text getter/setter
ok 13 - text getter throws exception with argument
ok 14 - text setter throws exception with no argument
ok 15 - text setter throws exception with too many argument
ok 16 - text setter accepts undef
ok 17 - databaseReferences set in new()
ok 18 - setDatabaseReferences returns correct value
ok 19 - getDatabaseReferences fetches correct value
ok 20 - addDatabaseReferences returns number of items in list
ok 21 - addDatabaseReferences adds correct value
ok 22 - setDatabaseReferences throws exception with non-array argument
ok 23 - setDatabaseReferences throws exception with bad argument array
ok 24 - addDatabaseReferences throws exception with no arguments
ok 25 - addDatabaseReferences throws exception with bad array
ok 26 - setDatabaseReferences accepts empty array ref
ok 27 - getDatabaseReferences throws exception with argument
ok 28 - setDatabaseReferences throws exception with no argument
ok 29 - setDatabaseReferences throws exception with too many argument
ok 30 - setDatabaseReferences accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - databaseReferences->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - databaseReferences->self() is a valid Bio::MAGE::Association::End
ok 36 - An object of class 'Bio::MAGE::Description::ExternalReference' isa 'Bio::MAGE::Description::ExternalReference'
ok 37 - setExternalReference returns value
ok 38 - getExternalReference fetches correct value
ok 39 - setExternalReference throws exception with bad argument
ok 40 - getExternalReference throws exception with argument
ok 41 - setExternalReference throws exception with no argument
ok 42 - setExternalReference throws exception with too many argument
ok 43 - setExternalReference accepts undef
ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 46 - externalReference->other() is a valid Bio::MAGE::Association::End
ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 48 - externalReference->self() is a valid Bio::MAGE::Association::End
ok 49 - bibliographicReferences set in new()
ok 50 - setBibliographicReferences returns correct value
ok 51 - getBibliographicReferences fetches correct value
ok 52 - addBibliographicReferences returns number of items in list
ok 53 - addBibliographicReferences adds correct value
ok 54 - setBibliographicReferences throws exception with non-array argument
ok 55 - setBibliographicReferences throws exception with bad argument array
ok 56 - addBibliographicReferences throws exception with no arguments
ok 57 - addBibliographicReferences throws exception with bad array
ok 58 - setBibliographicReferences accepts empty array ref
ok 59 - getBibliographicReferences throws exception with argument
ok 60 - setBibliographicReferences throws exception with no argument
ok 61 - setBibliographicReferences throws exception with too many argument
ok 62 - setBibliographicReferences accepts undef
ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 65 - bibliographicReferences->other() is a valid Bio::MAGE::Association::End
ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 67 - bibliographicReferences->self() is a valid Bio::MAGE::Association::End
ok 68 - descriptions set in new()
ok 69 - setDescriptions returns correct value
ok 70 - getDescriptions fetches correct value
ok 71 - addDescriptions returns number of items in list
ok 72 - addDescriptions adds correct value
ok 73 - setDescriptions throws exception with non-array argument
ok 74 - setDescriptions throws exception with bad argument array
ok 75 - addDescriptions throws exception with no arguments
ok 76 - addDescriptions throws exception with bad array
ok 77 - setDescriptions accepts empty array ref
ok 78 - getDescriptions throws exception with argument
ok 79 - setDescriptions throws exception with no argument
ok 80 - setDescriptions throws exception with too many argument
ok 81 - setDescriptions accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 87 - auditTrail set in new()
ok 88 - setAuditTrail returns correct value
ok 89 - getAuditTrail fetches correct value
ok 90 - addAuditTrail returns number of items in list
ok 91 - addAuditTrail adds correct value
ok 92 - setAuditTrail throws exception with non-array argument
ok 93 - setAuditTrail throws exception with bad argument array
ok 94 - addAuditTrail throws exception with no arguments
ok 95 - addAuditTrail throws exception with bad array
ok 96 - setAuditTrail accepts empty array ref
ok 97 - getAuditTrail throws exception with argument
ok 98 - setAuditTrail throws exception with no argument
ok 99 - setAuditTrail throws exception with too many argument
ok 100 - setAuditTrail accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 106 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 107 - setSecurity returns value
ok 108 - getSecurity fetches correct value
ok 109 - setSecurity throws exception with bad argument
ok 110 - getSecurity throws exception with argument
ok 111 - setSecurity throws exception with no argument
ok 112 - setSecurity throws exception with too many argument
ok 113 - setSecurity accepts undef
ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 116 - security->other() is a valid Bio::MAGE::Association::End
ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 118 - security->self() is a valid Bio::MAGE::Association::End
ok 119 - propertySets set in new()
ok 120 - setPropertySets returns correct value
ok 121 - getPropertySets fetches correct value
ok 122 - addPropertySets returns number of items in list
ok 123 - addPropertySets adds correct value
ok 124 - setPropertySets throws exception with non-array argument
ok 125 - setPropertySets throws exception with bad argument array
ok 126 - addPropertySets throws exception with no arguments
ok 127 - addPropertySets throws exception with bad array
ok 128 - setPropertySets accepts empty array ref
ok 129 - getPropertySets throws exception with argument
ok 130 - setPropertySets throws exception with no argument
ok 131 - setPropertySets throws exception with too many argument
ok 132 - setPropertySets accepts undef
ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 135 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 137 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 138 - annotations set in new()
ok 139 - setAnnotations returns correct value
ok 140 - getAnnotations fetches correct value
ok 141 - addAnnotations returns number of items in list
ok 142 - addAnnotations adds correct value
ok 143 - setAnnotations throws exception with non-array argument
ok 144 - setAnnotations throws exception with bad argument array
ok 145 - addAnnotations throws exception with no arguments
ok 146 - addAnnotations throws exception with bad array
ok 147 - setAnnotations accepts empty array ref
ok 148 - getAnnotations throws exception with argument
ok 149 - setAnnotations throws exception with no argument
ok 150 - setAnnotations throws exception with too many argument
ok 151 - setAnnotations accepts undef
ok 152 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 154 - annotations->other() is a valid Bio::MAGE::Association::End
ok 155 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 156 - annotations->self() is a valid Bio::MAGE::Association::End
ok 157 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable'
ok 158 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Describable'
ok
t/Description_package.t ..........
1..16
ok 1 - use Bio::MAGE::Description;
ok 2 - number of subclasses
ok 3 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Description::Description'
ok 4 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Description::DatabaseEntry'
ok 5 - An object of class 'Bio::MAGE::Description::Database' isa 'Bio::MAGE::Description::Database'
ok 6 - An object of class 'Bio::MAGE::Description::ExternalReference' isa 'Bio::MAGE::Description::ExternalReference'
ok 7 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 8 - An object of class 'Bio::MAGE::Description' isa 'Bio::MAGE::Description'
ok 9 - tagname
ok 10 - xml_lists
ok 11 - A reference of type 'ARRAY' isa 'ARRAY'
ok 12 - database_list empty
ok 13 - A reference of type 'ARRAY' isa 'ARRAY'
ok 14 - getDatabase_list empty
ok 15 - A reference of type 'ARRAY' isa 'ARRAY'
ok 16 - getDatabase_list not empty
ok
t/DesignElement.t ................
1..107
ok 1 - use Bio::MAGE::DesignElement::DesignElement;
ok 2 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::DesignElement::DesignElement'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 18 - setControlType returns value
ok 19 - getControlType fetches correct value
ok 20 - setControlType throws exception with bad argument
ok 21 - getControlType throws exception with argument
ok 22 - setControlType throws exception with no argument
ok 23 - setControlType throws exception with too many argument
ok 24 - setControlType accepts undef
ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 27 - controlType->other() is a valid Bio::MAGE::Association::End
ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 29 - controlType->self() is a valid Bio::MAGE::Association::End
ok 30 - descriptions set in new()
ok 31 - setDescriptions returns correct value
ok 32 - getDescriptions fetches correct value
ok 33 - addDescriptions returns number of items in list
ok 34 - addDescriptions adds correct value
ok 35 - setDescriptions throws exception with non-array argument
ok 36 - setDescriptions throws exception with bad argument array
ok 37 - addDescriptions throws exception with no arguments
ok 38 - addDescriptions throws exception with bad array
ok 39 - setDescriptions accepts empty array ref
ok 40 - getDescriptions throws exception with argument
ok 41 - setDescriptions throws exception with no argument
ok 42 - setDescriptions throws exception with too many argument
ok 43 - setDescriptions accepts undef
ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 46 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 48 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 49 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 50 - setSecurity returns value
ok 51 - getSecurity fetches correct value
ok 52 - setSecurity throws exception with bad argument
ok 53 - getSecurity throws exception with argument
ok 54 - setSecurity throws exception with no argument
ok 55 - setSecurity throws exception with too many argument
ok 56 - setSecurity accepts undef
ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 59 - security->other() is a valid Bio::MAGE::Association::End
ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 61 - security->self() is a valid Bio::MAGE::Association::End
ok 62 - auditTrail set in new()
ok 63 - setAuditTrail returns correct value
ok 64 - getAuditTrail fetches correct value
ok 65 - addAuditTrail returns number of items in list
ok 66 - addAuditTrail adds correct value
ok 67 - setAuditTrail throws exception with non-array argument
ok 68 - setAuditTrail throws exception with bad argument array
ok 69 - addAuditTrail throws exception with no arguments
ok 70 - addAuditTrail throws exception with bad array
ok 71 - setAuditTrail accepts empty array ref
ok 72 - getAuditTrail throws exception with argument
ok 73 - setAuditTrail throws exception with no argument
ok 74 - setAuditTrail throws exception with too many argument
ok 75 - setAuditTrail accepts undef
ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 78 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 80 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 81 - propertySets set in new()
ok 82 - setPropertySets returns correct value
ok 83 - getPropertySets fetches correct value
ok 84 - addPropertySets returns number of items in list
ok 85 - addPropertySets adds correct value
ok 86 - setPropertySets throws exception with non-array argument
ok 87 - setPropertySets throws exception with bad argument array
ok 88 - addPropertySets throws exception with no arguments
ok 89 - addPropertySets throws exception with bad array
ok 90 - setPropertySets accepts empty array ref
ok 91 - getPropertySets throws exception with argument
ok 92 - setPropertySets throws exception with no argument
ok 93 - setPropertySets throws exception with too many argument
ok 94 - setPropertySets accepts undef
ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 97 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 99 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 100 - An object of class 'Bio::MAGE::DesignElement::Reporter' isa 'Bio::MAGE::DesignElement::Reporter'
ok 101 - An object of class 'Bio::MAGE::DesignElement::Reporter' isa 'Bio::MAGE::DesignElement::DesignElement'
ok 102 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::CompositeSequence'
ok 103 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::DesignElement'
ok 104 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::Feature'
ok 105 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::DesignElement'
ok 106 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 107 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::Identifiable'
ok
t/DesignElement_package.t ........
1..48
ok 1 - use Bio::MAGE::DesignElement;
ok 2 - number of subclasses
ok 3 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::DesignElement::DesignElement'
ok 4 - An object of class 'Bio::MAGE::DesignElement::Position' isa 'Bio::MAGE::DesignElement::Position'
ok 5 - An object of class 'Bio::MAGE::DesignElement::Reporter' isa 'Bio::MAGE::DesignElement::Reporter'
ok 6 - An object of class 'Bio::MAGE::DesignElement::ReporterPosition' isa 'Bio::MAGE::DesignElement::ReporterPosition'
ok 7 - An object of class 'Bio::MAGE::DesignElement::CompositePosition' isa 'Bio::MAGE::DesignElement::CompositePosition'
ok 8 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::CompositeSequence'
ok 9 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::Feature'
ok 10 - An object of class 'Bio::MAGE::DesignElement::MismatchInformation' isa 'Bio::MAGE::DesignElement::MismatchInformation'
ok 11 - An object of class 'Bio::MAGE::DesignElement::FeatureInformation' isa 'Bio::MAGE::DesignElement::FeatureInformation'
ok 12 - An object of class 'Bio::MAGE::DesignElement::CompositeCompositeMap' isa 'Bio::MAGE::DesignElement::CompositeCompositeMap'
ok 13 - An object of class 'Bio::MAGE::DesignElement::FeatureReporterMap' isa 'Bio::MAGE::DesignElement::FeatureReporterMap'
ok 14 - An object of class 'Bio::MAGE::DesignElement::ReporterCompositeMap' isa 'Bio::MAGE::DesignElement::ReporterCompositeMap'
ok 15 - An object of class 'Bio::MAGE::DesignElement::FeatureLocation' isa 'Bio::MAGE::DesignElement::FeatureLocation'
ok 16 - An object of class 'Bio::MAGE::DesignElement' isa 'Bio::MAGE::DesignElement'
ok 17 - tagname
ok 18 - xml_lists
ok 19 - A reference of type 'ARRAY' isa 'ARRAY'
ok 20 - compositesequence_list empty
ok 21 - A reference of type 'ARRAY' isa 'ARRAY'
ok 22 - getCompositeSequence_list empty
ok 23 - A reference of type 'ARRAY' isa 'ARRAY'
ok 24 - getCompositeSequence_list not empty
ok 25 - A reference of type 'ARRAY' isa 'ARRAY'
ok 26 - reporter_list empty
ok 27 - A reference of type 'ARRAY' isa 'ARRAY'
ok 28 - getReporter_list empty
ok 29 - A reference of type 'ARRAY' isa 'ARRAY'
ok 30 - getReporter_list not empty
ok 31 - A reference of type 'ARRAY' isa 'ARRAY'
ok 32 - compositecompositemap_list empty
ok 33 - A reference of type 'ARRAY' isa 'ARRAY'
ok 34 - getCompositeCompositeMap_list empty
ok 35 - A reference of type 'ARRAY' isa 'ARRAY'
ok 36 - getCompositeCompositeMap_list not empty
ok 37 - A reference of type 'ARRAY' isa 'ARRAY'
ok 38 - reportercompositemap_list empty
ok 39 - A reference of type 'ARRAY' isa 'ARRAY'
ok 40 - getReporterCompositeMap_list empty
ok 41 - A reference of type 'ARRAY' isa 'ARRAY'
ok 42 - getReporterCompositeMap_list not empty
ok 43 - A reference of type 'ARRAY' isa 'ARRAY'
ok 44 - featurereportermap_list empty
ok 45 - A reference of type 'ARRAY' isa 'ARRAY'
ok 46 - getFeatureReporterMap_list empty
ok 47 - A reference of type 'ARRAY' isa 'ARRAY'
ok 48 - getFeatureReporterMap_list not empty
ok
t/DesignElementDimension.t .......
1..94
ok 1 - use Bio::MAGE::BioAssayData::DesignElementDimension;
ok 2 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - descriptions set in new()
ok 18 - setDescriptions returns correct value
ok 19 - getDescriptions fetches correct value
ok 20 - addDescriptions returns number of items in list
ok 21 - addDescriptions adds correct value
ok 22 - setDescriptions throws exception with non-array argument
ok 23 - setDescriptions throws exception with bad argument array
ok 24 - addDescriptions throws exception with no arguments
ok 25 - addDescriptions throws exception with bad array
ok 26 - setDescriptions accepts empty array ref
ok 27 - getDescriptions throws exception with argument
ok 28 - setDescriptions throws exception with no argument
ok 29 - setDescriptions throws exception with too many argument
ok 30 - setDescriptions accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 36 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 37 - setSecurity returns value
ok 38 - getSecurity fetches correct value
ok 39 - setSecurity throws exception with bad argument
ok 40 - getSecurity throws exception with argument
ok 41 - setSecurity throws exception with no argument
ok 42 - setSecurity throws exception with too many argument
ok 43 - setSecurity accepts undef
ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 46 - security->other() is a valid Bio::MAGE::Association::End
ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 48 - security->self() is a valid Bio::MAGE::Association::End
ok 49 - auditTrail set in new()
ok 50 - setAuditTrail returns correct value
ok 51 - getAuditTrail fetches correct value
ok 52 - addAuditTrail returns number of items in list
ok 53 - addAuditTrail adds correct value
ok 54 - setAuditTrail throws exception with non-array argument
ok 55 - setAuditTrail throws exception with bad argument array
ok 56 - addAuditTrail throws exception with no arguments
ok 57 - addAuditTrail throws exception with bad array
ok 58 - setAuditTrail accepts empty array ref
ok 59 - getAuditTrail throws exception with argument
ok 60 - setAuditTrail throws exception with no argument
ok 61 - setAuditTrail throws exception with too many argument
ok 62 - setAuditTrail accepts undef
ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 65 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 67 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 68 - propertySets set in new()
ok 69 - setPropertySets returns correct value
ok 70 - getPropertySets fetches correct value
ok 71 - addPropertySets returns number of items in list
ok 72 - addPropertySets adds correct value
ok 73 - setPropertySets throws exception with non-array argument
ok 74 - setPropertySets throws exception with bad argument array
ok 75 - addPropertySets throws exception with no arguments
ok 76 - addPropertySets throws exception with bad array
ok 77 - setPropertySets accepts empty array ref
ok 78 - getPropertySets throws exception with argument
ok 79 - setPropertySets throws exception with no argument
ok 80 - setPropertySets throws exception with too many argument
ok 81 - setPropertySets accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 87 - An object of class 'Bio::MAGE::BioAssayData::CompositeSequenceDimension' isa 'Bio::MAGE::BioAssayData::CompositeSequenceDimension'
ok 88 - An object of class 'Bio::MAGE::BioAssayData::CompositeSequenceDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension'
ok 89 - An object of class 'Bio::MAGE::BioAssayData::ReporterDimension' isa 'Bio::MAGE::BioAssayData::ReporterDimension'
ok 90 - An object of class 'Bio::MAGE::BioAssayData::ReporterDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension'
ok 91 - An object of class 'Bio::MAGE::BioAssayData::FeatureDimension' isa 'Bio::MAGE::BioAssayData::FeatureDimension'
ok 92 - An object of class 'Bio::MAGE::BioAssayData::FeatureDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension'
ok 93 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 94 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::Identifiable'
ok
t/DesignElementGroup.t ...........
1..126
ok 1 - use Bio::MAGE::ArrayDesign::DesignElementGroup;
ok 2 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - types set in new()
ok 18 - setTypes returns correct value
ok 19 - getTypes fetches correct value
ok 20 - addTypes returns number of items in list
ok 21 - addTypes adds correct value
ok 22 - setTypes throws exception with non-array argument
ok 23 - setTypes throws exception with bad argument array
ok 24 - addTypes throws exception with no arguments
ok 25 - addTypes throws exception with bad array
ok 26 - setTypes accepts empty array ref
ok 27 - getTypes throws exception with argument
ok 28 - setTypes throws exception with no argument
ok 29 - setTypes throws exception with too many argument
ok 30 - setTypes accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - types->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - types->self() is a valid Bio::MAGE::Association::End
ok 36 - descriptions set in new()
ok 37 - setDescriptions returns correct value
ok 38 - getDescriptions fetches correct value
ok 39 - addDescriptions returns number of items in list
ok 40 - addDescriptions adds correct value
ok 41 - setDescriptions throws exception with non-array argument
ok 42 - setDescriptions throws exception with bad argument array
ok 43 - addDescriptions throws exception with no arguments
ok 44 - addDescriptions throws exception with bad array
ok 45 - setDescriptions accepts empty array ref
ok 46 - getDescriptions throws exception with argument
ok 47 - setDescriptions throws exception with no argument
ok 48 - setDescriptions throws exception with too many argument
ok 49 - setDescriptions accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 56 - setSecurity returns value
ok 57 - getSecurity fetches correct value
ok 58 - setSecurity throws exception with bad argument
ok 59 - getSecurity throws exception with argument
ok 60 - setSecurity throws exception with no argument
ok 61 - setSecurity throws exception with too many argument
ok 62 - setSecurity accepts undef
ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 65 - security->other() is a valid Bio::MAGE::Association::End
ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 67 - security->self() is a valid Bio::MAGE::Association::End
ok 68 - auditTrail set in new()
ok 69 - setAuditTrail returns correct value
ok 70 - getAuditTrail fetches correct value
ok 71 - addAuditTrail returns number of items in list
ok 72 - addAuditTrail adds correct value
ok 73 - setAuditTrail throws exception with non-array argument
ok 74 - setAuditTrail throws exception with bad argument array
ok 75 - addAuditTrail throws exception with no arguments
ok 76 - addAuditTrail throws exception with bad array
ok 77 - setAuditTrail accepts empty array ref
ok 78 - getAuditTrail throws exception with argument
ok 79 - setAuditTrail throws exception with no argument
ok 80 - setAuditTrail throws exception with too many argument
ok 81 - setAuditTrail accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 87 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 88 - setSpecies returns value
ok 89 - getSpecies fetches correct value
ok 90 - setSpecies throws exception with bad argument
ok 91 - getSpecies throws exception with argument
ok 92 - setSpecies throws exception with no argument
ok 93 - setSpecies throws exception with too many argument
ok 94 - setSpecies accepts undef
ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 97 - species->other() is a valid Bio::MAGE::Association::End
ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 99 - species->self() is a valid Bio::MAGE::Association::End
ok 100 - propertySets set in new()
ok 101 - setPropertySets returns correct value
ok 102 - getPropertySets fetches correct value
ok 103 - addPropertySets returns number of items in list
ok 104 - addPropertySets adds correct value
ok 105 - setPropertySets throws exception with non-array argument
ok 106 - setPropertySets throws exception with bad argument array
ok 107 - addPropertySets throws exception with no arguments
ok 108 - addPropertySets throws exception with bad array
ok 109 - setPropertySets accepts empty array ref
ok 110 - getPropertySets throws exception with argument
ok 111 - setPropertySets throws exception with no argument
ok 112 - setPropertySets throws exception with too many argument
ok 113 - setPropertySets accepts undef
ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 116 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 118 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 119 - An object of class 'Bio::MAGE::ArrayDesign::ReporterGroup' isa 'Bio::MAGE::ArrayDesign::ReporterGroup'
ok 120 - An object of class 'Bio::MAGE::ArrayDesign::ReporterGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup'
ok 121 - An object of class 'Bio::MAGE::ArrayDesign::FeatureGroup' isa 'Bio::MAGE::ArrayDesign::FeatureGroup'
ok 122 - An object of class 'Bio::MAGE::ArrayDesign::FeatureGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup'
ok 123 - An object of class 'Bio::MAGE::ArrayDesign::CompositeGroup' isa 'Bio::MAGE::ArrayDesign::CompositeGroup'
ok 124 - An object of class 'Bio::MAGE::ArrayDesign::CompositeGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup'
ok 125 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 126 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::Identifiable'
ok
t/DesignElementMap.t .............
1..113
ok 1 - use Bio::MAGE::BioAssayData::DesignElementMap;
ok 2 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - protocolApplications set in new()
ok 18 - setProtocolApplications returns correct value
ok 19 - getProtocolApplications fetches correct value
ok 20 - addProtocolApplications returns number of items in list
ok 21 - addProtocolApplications adds correct value
ok 22 - setProtocolApplications throws exception with non-array argument
ok 23 - setProtocolApplications throws exception with bad argument array
ok 24 - addProtocolApplications throws exception with no arguments
ok 25 - addProtocolApplications throws exception with bad array
ok 26 - setProtocolApplications accepts empty array ref
ok 27 - getProtocolApplications throws exception with argument
ok 28 - setProtocolApplications throws exception with no argument
ok 29 - setProtocolApplications throws exception with too many argument
ok 30 - setProtocolApplications accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End
ok 36 - descriptions set in new()
ok 37 - setDescriptions returns correct value
ok 38 - getDescriptions fetches correct value
ok 39 - addDescriptions returns number of items in list
ok 40 - addDescriptions adds correct value
ok 41 - setDescriptions throws exception with non-array argument
ok 42 - setDescriptions throws exception with bad argument array
ok 43 - addDescriptions throws exception with no arguments
ok 44 - addDescriptions throws exception with bad array
ok 45 - setDescriptions accepts empty array ref
ok 46 - getDescriptions throws exception with argument
ok 47 - setDescriptions throws exception with no argument
ok 48 - setDescriptions throws exception with too many argument
ok 49 - setDescriptions accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 56 - setSecurity returns value
ok 57 - getSecurity fetches correct value
ok 58 - setSecurity throws exception with bad argument
ok 59 - getSecurity throws exception with argument
ok 60 - setSecurity throws exception with no argument
ok 61 - setSecurity throws exception with too many argument
ok 62 - setSecurity accepts undef
ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 65 - security->other() is a valid Bio::MAGE::Association::End
ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 67 - security->self() is a valid Bio::MAGE::Association::End
ok 68 - auditTrail set in new()
ok 69 - setAuditTrail returns correct value
ok 70 - getAuditTrail fetches correct value
ok 71 - addAuditTrail returns number of items in list
ok 72 - addAuditTrail adds correct value
ok 73 - setAuditTrail throws exception with non-array argument
ok 74 - setAuditTrail throws exception with bad argument array
ok 75 - addAuditTrail throws exception with no arguments
ok 76 - addAuditTrail throws exception with bad array
ok 77 - setAuditTrail accepts empty array ref
ok 78 - getAuditTrail throws exception with argument
ok 79 - setAuditTrail throws exception with no argument
ok 80 - setAuditTrail throws exception with too many argument
ok 81 - setAuditTrail accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 87 - propertySets set in new()
ok 88 - setPropertySets returns correct value
ok 89 - getPropertySets fetches correct value
ok 90 - addPropertySets returns number of items in list
ok 91 - addPropertySets adds correct value
ok 92 - setPropertySets throws exception with non-array argument
ok 93 - setPropertySets throws exception with bad argument array
ok 94 - addPropertySets throws exception with no arguments
ok 95 - addPropertySets throws exception with bad array
ok 96 - setPropertySets accepts empty array ref
ok 97 - getPropertySets throws exception with argument
ok 98 - setPropertySets throws exception with no argument
ok 99 - setPropertySets throws exception with too many argument
ok 100 - setPropertySets accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 106 - An object of class 'Bio::MAGE::DesignElement::CompositeCompositeMap' isa 'Bio::MAGE::DesignElement::CompositeCompositeMap'
ok 107 - An object of class 'Bio::MAGE::DesignElement::CompositeCompositeMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap'
ok 108 - An object of class 'Bio::MAGE::DesignElement::FeatureReporterMap' isa 'Bio::MAGE::DesignElement::FeatureReporterMap'
ok 109 - An object of class 'Bio::MAGE::DesignElement::FeatureReporterMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap'
ok 110 - An object of class 'Bio::MAGE::DesignElement::ReporterCompositeMap' isa 'Bio::MAGE::DesignElement::ReporterCompositeMap'
ok 111 - An object of class 'Bio::MAGE::DesignElement::ReporterCompositeMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap'
ok 112 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::Map'
ok 113 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioEvent::Map'
ok
t/DesignElementMapping.t .........
1..44
ok 1 - use Bio::MAGE::BioAssayData::DesignElementMapping;
ok 2 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMapping' isa 'Bio::MAGE::BioAssayData::DesignElementMapping'
ok 3 - package
ok 4 - class_name
ok 5 - propertySets set in new()
ok 6 - setPropertySets returns correct value
ok 7 - getPropertySets fetches correct value
ok 8 - addPropertySets returns number of items in list
ok 9 - addPropertySets adds correct value
ok 10 - setPropertySets throws exception with non-array argument
ok 11 - setPropertySets throws exception with bad argument array
ok 12 - addPropertySets throws exception with no arguments
ok 13 - addPropertySets throws exception with bad array
ok 14 - setPropertySets accepts empty array ref
ok 15 - getPropertySets throws exception with argument
ok 16 - setPropertySets throws exception with no argument
ok 17 - setPropertySets throws exception with too many argument
ok 18 - setPropertySets accepts undef
ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 21 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 23 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 24 - designElementMaps set in new()
ok 25 - setDesignElementMaps returns correct value
ok 26 - getDesignElementMaps fetches correct value
ok 27 - addDesignElementMaps returns number of items in list
ok 28 - addDesignElementMaps adds correct value
ok 29 - setDesignElementMaps throws exception with non-array argument
ok 30 - setDesignElementMaps throws exception with bad argument array
ok 31 - addDesignElementMaps throws exception with no arguments
ok 32 - addDesignElementMaps throws exception with bad array
ok 33 - setDesignElementMaps accepts empty array ref
ok 34 - getDesignElementMaps throws exception with argument
ok 35 - setDesignElementMaps throws exception with no argument
ok 36 - setDesignElementMaps throws exception with too many argument
ok 37 - setDesignElementMaps accepts undef
ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 40 - designElementMaps->other() is a valid Bio::MAGE::Association::End
ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 42 - designElementMaps->self() is a valid Bio::MAGE::Association::End
ok 43 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable'
ok 44 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMapping' isa 'Bio::MAGE::Extendable'
ok
t/DistanceUnit.t .................
1..46
ok 1 - use Bio::MAGE::Measurement::DistanceUnit;
ok 2 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit'
ok 3 - package
ok 4 - class_name
ok 5 - unitName new
ok 6 - unitName getter/setter
ok 7 - unitName getter throws exception with argument
ok 8 - unitName setter throws exception with no argument
ok 9 - unitName setter throws exception with too many argument
ok 10 - unitName setter accepts undef
ok 11 - unitNameCV new
ok 12 - unitNameCV getter/setter
ok 13 - unitNameCV getter throws exception with argument
ok 14 - unitNameCV setter throws exception with no argument
ok 15 - unitNameCV setter throws exception with too many argument
ok 16 - unitNameCV setter accepts undef
ok 17 - unitNameCV setter throws exception with bad argument
ok 18 - unitNameCV accepts fm
ok 19 - unitNameCV accepts pm
ok 20 - unitNameCV accepts nm
ok 21 - unitNameCV accepts um
ok 22 - unitNameCV accepts mm
ok 23 - unitNameCV accepts cm
ok 24 - unitNameCV accepts m
ok 25 - unitNameCV accepts other
ok 26 - propertySets set in new()
ok 27 - setPropertySets returns correct value
ok 28 - getPropertySets fetches correct value
ok 29 - addPropertySets returns number of items in list
ok 30 - addPropertySets adds correct value
ok 31 - setPropertySets throws exception with non-array argument
ok 32 - setPropertySets throws exception with bad argument array
ok 33 - addPropertySets throws exception with no arguments
ok 34 - addPropertySets throws exception with bad array
ok 35 - setPropertySets accepts empty array ref
ok 36 - getPropertySets throws exception with argument
ok 37 - setPropertySets throws exception with no argument
ok 38 - setPropertySets throws exception with too many argument
ok 39 - setPropertySets accepts undef
ok 40 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 42 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 43 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 44 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 45 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit'
ok 46 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::Unit'
ok
t/Error.t ........................
1..184
ok 1 - use Bio::MAGE::QuantitationType::Error;
ok 2 - An object of class 'Bio::MAGE::QuantitationType::Error' isa 'Bio::MAGE::QuantitationType::Error'
ok 3 - package
ok 4 - class_name
ok 5 - isBackground new
ok 6 - isBackground getter/setter
ok 7 - isBackground getter throws exception with argument
ok 8 - isBackground setter throws exception with no argument
ok 9 - isBackground setter throws exception with too many argument
ok 10 - isBackground setter accepts undef
ok 11 - identifier new
ok 12 - identifier getter/setter
ok 13 - identifier getter throws exception with argument
ok 14 - identifier setter throws exception with no argument
ok 15 - identifier setter throws exception with too many argument
ok 16 - identifier setter accepts undef
ok 17 - name new
ok 18 - name getter/setter
ok 19 - name getter throws exception with argument
ok 20 - name setter throws exception with no argument
ok 21 - name setter throws exception with too many argument
ok 22 - name setter accepts undef
ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 24 - setDataType returns value
ok 25 - getDataType fetches correct value
ok 26 - setDataType throws exception with bad argument
ok 27 - getDataType throws exception with argument
ok 28 - setDataType throws exception with no argument
ok 29 - setDataType throws exception with too many argument
ok 30 - setDataType accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - dataType->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - dataType->self() is a valid Bio::MAGE::Association::End
ok 36 - auditTrail set in new()
ok 37 - setAuditTrail returns correct value
ok 38 - getAuditTrail fetches correct value
ok 39 - addAuditTrail returns number of items in list
ok 40 - addAuditTrail adds correct value
ok 41 - setAuditTrail throws exception with non-array argument
ok 42 - setAuditTrail throws exception with bad argument array
ok 43 - addAuditTrail throws exception with no arguments
ok 44 - addAuditTrail throws exception with bad array
ok 45 - setAuditTrail accepts empty array ref
ok 46 - getAuditTrail throws exception with argument
ok 47 - setAuditTrail throws exception with no argument
ok 48 - setAuditTrail throws exception with too many argument
ok 49 - setAuditTrail accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 55 - propertySets set in new()
ok 56 - setPropertySets returns correct value
ok 57 - getPropertySets fetches correct value
ok 58 - addPropertySets returns number of items in list
ok 59 - addPropertySets adds correct value
ok 60 - setPropertySets throws exception with non-array argument
ok 61 - setPropertySets throws exception with bad argument array
ok 62 - addPropertySets throws exception with no arguments
ok 63 - addPropertySets throws exception with bad array
ok 64 - setPropertySets accepts empty array ref
ok 65 - getPropertySets throws exception with argument
ok 66 - setPropertySets throws exception with no argument
ok 67 - setPropertySets throws exception with too many argument
ok 68 - setPropertySets accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 74 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel'
ok 75 - setChannel returns value
ok 76 - getChannel fetches correct value
ok 77 - setChannel throws exception with bad argument
ok 78 - getChannel throws exception with argument
ok 79 - setChannel throws exception with no argument
ok 80 - setChannel throws exception with too many argument
ok 81 - setChannel accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - channel->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - channel->self() is a valid Bio::MAGE::Association::End
ok 87 - confidenceIndicators set in new()
ok 88 - setConfidenceIndicators returns correct value
ok 89 - getConfidenceIndicators fetches correct value
ok 90 - addConfidenceIndicators returns number of items in list
ok 91 - addConfidenceIndicators adds correct value
ok 92 - setConfidenceIndicators throws exception with non-array argument
ok 93 - setConfidenceIndicators throws exception with bad argument array
ok 94 - addConfidenceIndicators throws exception with no arguments
ok 95 - addConfidenceIndicators throws exception with bad array
ok 96 - setConfidenceIndicators accepts empty array ref
ok 97 - getConfidenceIndicators throws exception with argument
ok 98 - setConfidenceIndicators throws exception with no argument
ok 99 - setConfidenceIndicators throws exception with too many argument
ok 100 - setConfidenceIndicators accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End
ok 106 - descriptions set in new()
ok 107 - setDescriptions returns correct value
ok 108 - getDescriptions fetches correct value
ok 109 - addDescriptions returns number of items in list
ok 110 - addDescriptions adds correct value
ok 111 - setDescriptions throws exception with non-array argument
ok 112 - setDescriptions throws exception with bad argument array
ok 113 - addDescriptions throws exception with no arguments
ok 114 - addDescriptions throws exception with bad array
ok 115 - setDescriptions accepts empty array ref
ok 116 - getDescriptions throws exception with argument
ok 117 - setDescriptions throws exception with no argument
ok 118 - setDescriptions throws exception with too many argument
ok 119 - setDescriptions accepts undef
ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 122 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 124 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 125 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 126 - setSecurity returns value
ok 127 - getSecurity fetches correct value
ok 128 - setSecurity throws exception with bad argument
ok 129 - getSecurity throws exception with argument
ok 130 - setSecurity throws exception with no argument
ok 131 - setSecurity throws exception with too many argument
ok 132 - setSecurity accepts undef
ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 135 - security->other() is a valid Bio::MAGE::Association::End
ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 137 - security->self() is a valid Bio::MAGE::Association::End
ok 138 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 139 - setScale returns value
ok 140 - getScale fetches correct value
ok 141 - setScale throws exception with bad argument
ok 142 - getScale throws exception with argument
ok 143 - setScale throws exception with no argument
ok 144 - setScale throws exception with too many argument
ok 145 - setScale accepts undef
ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 148 - scale->other() is a valid Bio::MAGE::Association::End
ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 150 - scale->self() is a valid Bio::MAGE::Association::End
ok 151 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType'
ok 152 - setTargetQuantitationType returns value
ok 153 - getTargetQuantitationType fetches correct value
ok 154 - setTargetQuantitationType throws exception with bad argument
ok 155 - getTargetQuantitationType throws exception with argument
ok 156 - setTargetQuantitationType throws exception with no argument
ok 157 - setTargetQuantitationType throws exception with too many argument
ok 158 - setTargetQuantitationType accepts undef
ok 159 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 161 - targetQuantitationType->other() is a valid Bio::MAGE::Association::End
ok 162 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 163 - targetQuantitationType->self() is a valid Bio::MAGE::Association::End
ok 164 - quantitationTypeMaps set in new()
ok 165 - setQuantitationTypeMaps returns correct value
ok 166 - getQuantitationTypeMaps fetches correct value
ok 167 - addQuantitationTypeMaps returns number of items in list
ok 168 - addQuantitationTypeMaps adds correct value
ok 169 - setQuantitationTypeMaps throws exception with non-array argument
ok 170 - setQuantitationTypeMaps throws exception with bad argument array
ok 171 - addQuantitationTypeMaps throws exception with no arguments
ok 172 - addQuantitationTypeMaps throws exception with bad array
ok 173 - setQuantitationTypeMaps accepts empty array ref
ok 174 - getQuantitationTypeMaps throws exception with argument
ok 175 - setQuantitationTypeMaps throws exception with no argument
ok 176 - setQuantitationTypeMaps throws exception with too many argument
ok 177 - setQuantitationTypeMaps accepts undef
ok 178 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 179 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 180 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End
ok 181 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 182 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End
ok 183 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator'
ok 184 - An object of class 'Bio::MAGE::QuantitationType::Error' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator'
ok
t/ExpectedValue.t ................
1..184
ok 1 - use Bio::MAGE::QuantitationType::ExpectedValue;
ok 2 - An object of class 'Bio::MAGE::QuantitationType::ExpectedValue' isa 'Bio::MAGE::QuantitationType::ExpectedValue'
ok 3 - package
ok 4 - class_name
ok 5 - isBackground new
ok 6 - isBackground getter/setter
ok 7 - isBackground getter throws exception with argument
ok 8 - isBackground setter throws exception with no argument
ok 9 - isBackground setter throws exception with too many argument
ok 10 - isBackground setter accepts undef
ok 11 - identifier new
ok 12 - identifier getter/setter
ok 13 - identifier getter throws exception with argument
ok 14 - identifier setter throws exception with no argument
ok 15 - identifier setter throws exception with too many argument
ok 16 - identifier setter accepts undef
ok 17 - name new
ok 18 - name getter/setter
ok 19 - name getter throws exception with argument
ok 20 - name setter throws exception with no argument
ok 21 - name setter throws exception with too many argument
ok 22 - name setter accepts undef
ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 24 - setDataType returns value
ok 25 - getDataType fetches correct value
ok 26 - setDataType throws exception with bad argument
ok 27 - getDataType throws exception with argument
ok 28 - setDataType throws exception with no argument
ok 29 - setDataType throws exception with too many argument
ok 30 - setDataType accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - dataType->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - dataType->self() is a valid Bio::MAGE::Association::End
ok 36 - auditTrail set in new()
ok 37 - setAuditTrail returns correct value
ok 38 - getAuditTrail fetches correct value
ok 39 - addAuditTrail returns number of items in list
ok 40 - addAuditTrail adds correct value
ok 41 - setAuditTrail throws exception with non-array argument
ok 42 - setAuditTrail throws exception with bad argument array
ok 43 - addAuditTrail throws exception with no arguments
ok 44 - addAuditTrail throws exception with bad array
ok 45 - setAuditTrail accepts empty array ref
ok 46 - getAuditTrail throws exception with argument
ok 47 - setAuditTrail throws exception with no argument
ok 48 - setAuditTrail throws exception with too many argument
ok 49 - setAuditTrail accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 55 - propertySets set in new()
ok 56 - setPropertySets returns correct value
ok 57 - getPropertySets fetches correct value
ok 58 - addPropertySets returns number of items in list
ok 59 - addPropertySets adds correct value
ok 60 - setPropertySets throws exception with non-array argument
ok 61 - setPropertySets throws exception with bad argument array
ok 62 - addPropertySets throws exception with no arguments
ok 63 - addPropertySets throws exception with bad array
ok 64 - setPropertySets accepts empty array ref
ok 65 - getPropertySets throws exception with argument
ok 66 - setPropertySets throws exception with no argument
ok 67 - setPropertySets throws exception with too many argument
ok 68 - setPropertySets accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 74 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel'
ok 75 - setChannel returns value
ok 76 - getChannel fetches correct value
ok 77 - setChannel throws exception with bad argument
ok 78 - getChannel throws exception with argument
ok 79 - setChannel throws exception with no argument
ok 80 - setChannel throws exception with too many argument
ok 81 - setChannel accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - channel->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - channel->self() is a valid Bio::MAGE::Association::End
ok 87 - confidenceIndicators set in new()
ok 88 - setConfidenceIndicators returns correct value
ok 89 - getConfidenceIndicators fetches correct value
ok 90 - addConfidenceIndicators returns number of items in list
ok 91 - addConfidenceIndicators adds correct value
ok 92 - setConfidenceIndicators throws exception with non-array argument
ok 93 - setConfidenceIndicators throws exception with bad argument array
ok 94 - addConfidenceIndicators throws exception with no arguments
ok 95 - addConfidenceIndicators throws exception with bad array
ok 96 - setConfidenceIndicators accepts empty array ref
ok 97 - getConfidenceIndicators throws exception with argument
ok 98 - setConfidenceIndicators throws exception with no argument
ok 99 - setConfidenceIndicators throws exception with too many argument
ok 100 - setConfidenceIndicators accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End
ok 106 - descriptions set in new()
ok 107 - setDescriptions returns correct value
ok 108 - getDescriptions fetches correct value
ok 109 - addDescriptions returns number of items in list
ok 110 - addDescriptions adds correct value
ok 111 - setDescriptions throws exception with non-array argument
ok 112 - setDescriptions throws exception with bad argument array
ok 113 - addDescriptions throws exception with no arguments
ok 114 - addDescriptions throws exception with bad array
ok 115 - setDescriptions accepts empty array ref
ok 116 - getDescriptions throws exception with argument
ok 117 - setDescriptions throws exception with no argument
ok 118 - setDescriptions throws exception with too many argument
ok 119 - setDescriptions accepts undef
ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 122 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 124 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 125 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 126 - setSecurity returns value
ok 127 - getSecurity fetches correct value
ok 128 - setSecurity throws exception with bad argument
ok 129 - getSecurity throws exception with argument
ok 130 - setSecurity throws exception with no argument
ok 131 - setSecurity throws exception with too many argument
ok 132 - setSecurity accepts undef
ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 135 - security->other() is a valid Bio::MAGE::Association::End
ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 137 - security->self() is a valid Bio::MAGE::Association::End
ok 138 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 139 - setScale returns value
ok 140 - getScale fetches correct value
ok 141 - setScale throws exception with bad argument
ok 142 - getScale throws exception with argument
ok 143 - setScale throws exception with no argument
ok 144 - setScale throws exception with too many argument
ok 145 - setScale accepts undef
ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 148 - scale->other() is a valid Bio::MAGE::Association::End
ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 150 - scale->self() is a valid Bio::MAGE::Association::End
ok 151 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType'
ok 152 - setTargetQuantitationType returns value
ok 153 - getTargetQuantitationType fetches correct value
ok 154 - setTargetQuantitationType throws exception with bad argument
ok 155 - getTargetQuantitationType throws exception with argument
ok 156 - setTargetQuantitationType throws exception with no argument
ok 157 - setTargetQuantitationType throws exception with too many argument
ok 158 - setTargetQuantitationType accepts undef
ok 159 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 161 - targetQuantitationType->other() is a valid Bio::MAGE::Association::End
ok 162 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 163 - targetQuantitationType->self() is a valid Bio::MAGE::Association::End
ok 164 - quantitationTypeMaps set in new()
ok 165 - setQuantitationTypeMaps returns correct value
ok 166 - getQuantitationTypeMaps fetches correct value
ok 167 - addQuantitationTypeMaps returns number of items in list
ok 168 - addQuantitationTypeMaps adds correct value
ok 169 - setQuantitationTypeMaps throws exception with non-array argument
ok 170 - setQuantitationTypeMaps throws exception with bad argument array
ok 171 - addQuantitationTypeMaps throws exception with no arguments
ok 172 - addQuantitationTypeMaps throws exception with bad array
ok 173 - setQuantitationTypeMaps accepts empty array ref
ok 174 - getQuantitationTypeMaps throws exception with argument
ok 175 - setQuantitationTypeMaps throws exception with no argument
ok 176 - setQuantitationTypeMaps throws exception with too many argument
ok 177 - setQuantitationTypeMaps accepts undef
ok 178 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 179 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 180 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End
ok 181 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 182 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End
ok 183 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator'
ok 184 - An object of class 'Bio::MAGE::QuantitationType::ExpectedValue' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator'
ok
t/Experiment.t ...................
1..183
ok 1 - use Bio::MAGE::Experiment::Experiment;
ok 2 - An object of class 'Bio::MAGE::Experiment::Experiment' isa 'Bio::MAGE::Experiment::Experiment'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - experimentDesigns set in new()
ok 18 - setExperimentDesigns returns correct value
ok 19 - getExperimentDesigns fetches correct value
ok 20 - addExperimentDesigns returns number of items in list
ok 21 - addExperimentDesigns adds correct value
ok 22 - setExperimentDesigns throws exception with non-array argument
ok 23 - setExperimentDesigns throws exception with bad argument array
ok 24 - addExperimentDesigns throws exception with no arguments
ok 25 - addExperimentDesigns throws exception with bad array
ok 26 - setExperimentDesigns accepts empty array ref
ok 27 - getExperimentDesigns throws exception with argument
ok 28 - setExperimentDesigns throws exception with no argument
ok 29 - setExperimentDesigns throws exception with too many argument
ok 30 - setExperimentDesigns accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - experimentDesigns->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - experimentDesigns->self() is a valid Bio::MAGE::Association::End
ok 36 - providers set in new()
ok 37 - setProviders returns correct value
ok 38 - getProviders fetches correct value
ok 39 - addProviders returns number of items in list
ok 40 - addProviders adds correct value
ok 41 - setProviders throws exception with non-array argument
ok 42 - setProviders throws exception with bad argument array
ok 43 - addProviders throws exception with no arguments
ok 44 - addProviders throws exception with bad array
ok 45 - setProviders accepts empty array ref
ok 46 - getProviders throws exception with argument
ok 47 - setProviders throws exception with no argument
ok 48 - setProviders throws exception with too many argument
ok 49 - setProviders accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - providers->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - providers->self() is a valid Bio::MAGE::Association::End
ok 55 - auditTrail set in new()
ok 56 - setAuditTrail returns correct value
ok 57 - getAuditTrail fetches correct value
ok 58 - addAuditTrail returns number of items in list
ok 59 - addAuditTrail adds correct value
ok 60 - setAuditTrail throws exception with non-array argument
ok 61 - setAuditTrail throws exception with bad argument array
ok 62 - addAuditTrail throws exception with no arguments
ok 63 - addAuditTrail throws exception with bad array
ok 64 - setAuditTrail accepts empty array ref
ok 65 - getAuditTrail throws exception with argument
ok 66 - setAuditTrail throws exception with no argument
ok 67 - setAuditTrail throws exception with too many argument
ok 68 - setAuditTrail accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 74 - propertySets set in new()
ok 75 - setPropertySets returns correct value
ok 76 - getPropertySets fetches correct value
ok 77 - addPropertySets returns number of items in list
ok 78 - addPropertySets adds correct value
ok 79 - setPropertySets throws exception with non-array argument
ok 80 - setPropertySets throws exception with bad argument array
ok 81 - addPropertySets throws exception with no arguments
ok 82 - addPropertySets throws exception with bad array
ok 83 - setPropertySets accepts empty array ref
ok 84 - getPropertySets throws exception with argument
ok 85 - setPropertySets throws exception with no argument
ok 86 - setPropertySets throws exception with too many argument
ok 87 - setPropertySets accepts undef
ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 90 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 92 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 93 - analysisResults set in new()
ok 94 - setAnalysisResults returns correct value
ok 95 - getAnalysisResults fetches correct value
ok 96 - addAnalysisResults returns number of items in list
ok 97 - addAnalysisResults adds correct value
ok 98 - setAnalysisResults throws exception with non-array argument
ok 99 - setAnalysisResults throws exception with bad argument array
ok 100 - addAnalysisResults throws exception with no arguments
ok 101 - addAnalysisResults throws exception with bad array
ok 102 - setAnalysisResults accepts empty array ref
ok 103 - getAnalysisResults throws exception with argument
ok 104 - setAnalysisResults throws exception with no argument
ok 105 - setAnalysisResults throws exception with too many argument
ok 106 - setAnalysisResults accepts undef
ok 107 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 108 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 109 - analysisResults->other() is a valid Bio::MAGE::Association::End
ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 111 - analysisResults->self() is a valid Bio::MAGE::Association::End
ok 112 - bioAssays set in new()
ok 113 - setBioAssays returns correct value
ok 114 - getBioAssays fetches correct value
ok 115 - addBioAssays returns number of items in list
ok 116 - addBioAssays adds correct value
ok 117 - setBioAssays throws exception with non-array argument
ok 118 - setBioAssays throws exception with bad argument array
ok 119 - addBioAssays throws exception with no arguments
ok 120 - addBioAssays throws exception with bad array
ok 121 - setBioAssays accepts empty array ref
ok 122 - getBioAssays throws exception with argument
ok 123 - setBioAssays throws exception with no argument
ok 124 - setBioAssays throws exception with too many argument
ok 125 - setBioAssays accepts undef
ok 126 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 127 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 128 - bioAssays->other() is a valid Bio::MAGE::Association::End
ok 129 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 130 - bioAssays->self() is a valid Bio::MAGE::Association::End
ok 131 - descriptions set in new()
ok 132 - setDescriptions returns correct value
ok 133 - getDescriptions fetches correct value
ok 134 - addDescriptions returns number of items in list
ok 135 - addDescriptions adds correct value
ok 136 - setDescriptions throws exception with non-array argument
ok 137 - setDescriptions throws exception with bad argument array
ok 138 - addDescriptions throws exception with no arguments
ok 139 - addDescriptions throws exception with bad array
ok 140 - setDescriptions accepts empty array ref
ok 141 - getDescriptions throws exception with argument
ok 142 - setDescriptions throws exception with no argument
ok 143 - setDescriptions throws exception with too many argument
ok 144 - setDescriptions accepts undef
ok 145 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 146 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 147 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 148 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 149 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 150 - bioAssayData set in new()
ok 151 - setBioAssayData returns correct value
ok 152 - getBioAssayData fetches correct value
ok 153 - addBioAssayData returns number of items in list
ok 154 - addBioAssayData adds correct value
ok 155 - setBioAssayData throws exception with non-array argument
ok 156 - setBioAssayData throws exception with bad argument array
ok 157 - addBioAssayData throws exception with no arguments
ok 158 - addBioAssayData throws exception with bad array
ok 159 - setBioAssayData accepts empty array ref
ok 160 - getBioAssayData throws exception with argument
ok 161 - setBioAssayData throws exception with no argument
ok 162 - setBioAssayData throws exception with too many argument
ok 163 - setBioAssayData accepts undef
ok 164 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 165 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 166 - bioAssayData->other() is a valid Bio::MAGE::Association::End
ok 167 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 168 - bioAssayData->self() is a valid Bio::MAGE::Association::End
ok 169 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 170 - setSecurity returns value
ok 171 - getSecurity fetches correct value
ok 172 - setSecurity throws exception with bad argument
ok 173 - getSecurity throws exception with argument
ok 174 - setSecurity throws exception with no argument
ok 175 - setSecurity throws exception with too many argument
ok 176 - setSecurity accepts undef
ok 177 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 178 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 179 - security->other() is a valid Bio::MAGE::Association::End
ok 180 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 181 - security->self() is a valid Bio::MAGE::Association::End
ok 182 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 183 - An object of class 'Bio::MAGE::Experiment::Experiment' isa 'Bio::MAGE::Identifiable'
ok
t/Experiment_package.t ...........
1..15
ok 1 - use Bio::MAGE::Experiment;
ok 2 - number of subclasses
ok 3 - An object of class 'Bio::MAGE::Experiment::Experiment' isa 'Bio::MAGE::Experiment::Experiment'
ok 4 - An object of class 'Bio::MAGE::Experiment::ExperimentDesign' isa 'Bio::MAGE::Experiment::ExperimentDesign'
ok 5 - An object of class 'Bio::MAGE::Experiment::ExperimentalFactor' isa 'Bio::MAGE::Experiment::ExperimentalFactor'
ok 6 - An object of class 'Bio::MAGE::Experiment::FactorValue' isa 'Bio::MAGE::Experiment::FactorValue'
ok 7 - An object of class 'Bio::MAGE::Experiment' isa 'Bio::MAGE::Experiment'
ok 8 - tagname
ok 9 - xml_lists
ok 10 - A reference of type 'ARRAY' isa 'ARRAY'
ok 11 - experiment_list empty
ok 12 - A reference of type 'ARRAY' isa 'ARRAY'
ok 13 - getExperiment_list empty
ok 14 - A reference of type 'ARRAY' isa 'ARRAY'
ok 15 - getExperiment_list not empty
ok
t/ExperimentalFactor.t ...........
1..139
ok 1 - use Bio::MAGE::Experiment::ExperimentalFactor;
ok 2 - An object of class 'Bio::MAGE::Experiment::ExperimentalFactor' isa 'Bio::MAGE::Experiment::ExperimentalFactor'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - descriptions set in new()
ok 18 - setDescriptions returns correct value
ok 19 - getDescriptions fetches correct value
ok 20 - addDescriptions returns number of items in list
ok 21 - addDescriptions adds correct value
ok 22 - setDescriptions throws exception with non-array argument
ok 23 - setDescriptions throws exception with bad argument array
ok 24 - addDescriptions throws exception with no arguments
ok 25 - addDescriptions throws exception with bad array
ok 26 - setDescriptions accepts empty array ref
ok 27 - getDescriptions throws exception with argument
ok 28 - setDescriptions throws exception with no argument
ok 29 - setDescriptions throws exception with too many argument
ok 30 - setDescriptions accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 36 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 37 - setSecurity returns value
ok 38 - getSecurity fetches correct value
ok 39 - setSecurity throws exception with bad argument
ok 40 - getSecurity throws exception with argument
ok 41 - setSecurity throws exception with no argument
ok 42 - setSecurity throws exception with too many argument
ok 43 - setSecurity accepts undef
ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 46 - security->other() is a valid Bio::MAGE::Association::End
ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 48 - security->self() is a valid Bio::MAGE::Association::End
ok 49 - auditTrail set in new()
ok 50 - setAuditTrail returns correct value
ok 51 - getAuditTrail fetches correct value
ok 52 - addAuditTrail returns number of items in list
ok 53 - addAuditTrail adds correct value
ok 54 - setAuditTrail throws exception with non-array argument
ok 55 - setAuditTrail throws exception with bad argument array
ok 56 - addAuditTrail throws exception with no arguments
ok 57 - addAuditTrail throws exception with bad array
ok 58 - setAuditTrail accepts empty array ref
ok 59 - getAuditTrail throws exception with argument
ok 60 - setAuditTrail throws exception with no argument
ok 61 - setAuditTrail throws exception with too many argument
ok 62 - setAuditTrail accepts undef
ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 65 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 67 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 68 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 69 - setCategory returns value
ok 70 - getCategory fetches correct value
ok 71 - setCategory throws exception with bad argument
ok 72 - getCategory throws exception with argument
ok 73 - setCategory throws exception with no argument
ok 74 - setCategory throws exception with too many argument
ok 75 - setCategory accepts undef
ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 78 - category->other() is a valid Bio::MAGE::Association::End
ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 80 - category->self() is a valid Bio::MAGE::Association::End
ok 81 - propertySets set in new()
ok 82 - setPropertySets returns correct value
ok 83 - getPropertySets fetches correct value
ok 84 - addPropertySets returns number of items in list
ok 85 - addPropertySets adds correct value
ok 86 - setPropertySets throws exception with non-array argument
ok 87 - setPropertySets throws exception with bad argument array
ok 88 - addPropertySets throws exception with no arguments
ok 89 - addPropertySets throws exception with bad array
ok 90 - setPropertySets accepts empty array ref
ok 91 - getPropertySets throws exception with argument
ok 92 - setPropertySets throws exception with no argument
ok 93 - setPropertySets throws exception with too many argument
ok 94 - setPropertySets accepts undef
ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 97 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 99 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 100 - factorValues set in new()
ok 101 - setFactorValues returns correct value
ok 102 - getFactorValues fetches correct value
ok 103 - addFactorValues returns number of items in list
ok 104 - addFactorValues adds correct value
ok 105 - setFactorValues throws exception with non-array argument
ok 106 - setFactorValues throws exception with bad argument array
ok 107 - addFactorValues throws exception with no arguments
ok 108 - addFactorValues throws exception with bad array
ok 109 - setFactorValues accepts empty array ref
ok 110 - getFactorValues throws exception with argument
ok 111 - setFactorValues throws exception with no argument
ok 112 - setFactorValues throws exception with too many argument
ok 113 - setFactorValues accepts undef
ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 116 - factorValues->other() is a valid Bio::MAGE::Association::End
ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 118 - factorValues->self() is a valid Bio::MAGE::Association::End
ok 119 - annotations set in new()
ok 120 - setAnnotations returns correct value
ok 121 - getAnnotations fetches correct value
ok 122 - addAnnotations returns number of items in list
ok 123 - addAnnotations adds correct value
ok 124 - setAnnotations throws exception with non-array argument
ok 125 - setAnnotations throws exception with bad argument array
ok 126 - addAnnotations throws exception with no arguments
ok 127 - addAnnotations throws exception with bad array
ok 128 - setAnnotations accepts empty array ref
ok 129 - getAnnotations throws exception with argument
ok 130 - setAnnotations throws exception with no argument
ok 131 - setAnnotations throws exception with too many argument
ok 132 - setAnnotations accepts undef
ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 135 - annotations->other() is a valid Bio::MAGE::Association::End
ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 137 - annotations->self() is a valid Bio::MAGE::Association::End
ok 138 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 139 - An object of class 'Bio::MAGE::Experiment::ExperimentalFactor' isa 'Bio::MAGE::Identifiable'
ok
t/ExperimentDesign.t .............
1..172
ok 1 - use Bio::MAGE::Experiment::ExperimentDesign;
ok 2 - An object of class 'Bio::MAGE::Experiment::ExperimentDesign' isa 'Bio::MAGE::Experiment::ExperimentDesign'
ok 3 - package
ok 4 - class_name
ok 5 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Description::Description'
ok 6 - setReplicateDescription returns value
ok 7 - getReplicateDescription fetches correct value
ok 8 - setReplicateDescription throws exception with bad argument
ok 9 - getReplicateDescription throws exception with argument
ok 10 - setReplicateDescription throws exception with no argument
ok 11 - setReplicateDescription throws exception with too many argument
ok 12 - setReplicateDescription accepts undef
ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 15 - replicateDescription->other() is a valid Bio::MAGE::Association::End
ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 17 - replicateDescription->self() is a valid Bio::MAGE::Association::End
ok 18 - experimentalFactors set in new()
ok 19 - setExperimentalFactors returns correct value
ok 20 - getExperimentalFactors fetches correct value
ok 21 - addExperimentalFactors returns number of items in list
ok 22 - addExperimentalFactors adds correct value
ok 23 - setExperimentalFactors throws exception with non-array argument
ok 24 - setExperimentalFactors throws exception with bad argument array
ok 25 - addExperimentalFactors throws exception with no arguments
ok 26 - addExperimentalFactors throws exception with bad array
ok 27 - setExperimentalFactors accepts empty array ref
ok 28 - getExperimentalFactors throws exception with argument
ok 29 - setExperimentalFactors throws exception with no argument
ok 30 - setExperimentalFactors throws exception with too many argument
ok 31 - setExperimentalFactors accepts undef
ok 32 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 33 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 34 - experimentalFactors->other() is a valid Bio::MAGE::Association::End
ok 35 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 36 - experimentalFactors->self() is a valid Bio::MAGE::Association::End
ok 37 - types set in new()
ok 38 - setTypes returns correct value
ok 39 - getTypes fetches correct value
ok 40 - addTypes returns number of items in list
ok 41 - addTypes adds correct value
ok 42 - setTypes throws exception with non-array argument
ok 43 - setTypes throws exception with bad argument array
ok 44 - addTypes throws exception with no arguments
ok 45 - addTypes throws exception with bad array
ok 46 - setTypes accepts empty array ref
ok 47 - getTypes throws exception with argument
ok 48 - setTypes throws exception with no argument
ok 49 - setTypes throws exception with too many argument
ok 50 - setTypes accepts undef
ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 53 - types->other() is a valid Bio::MAGE::Association::End
ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 55 - types->self() is a valid Bio::MAGE::Association::End
ok 56 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Description::Description'
ok 57 - setQualityControlDescription returns value
ok 58 - getQualityControlDescription fetches correct value
ok 59 - setQualityControlDescription throws exception with bad argument
ok 60 - getQualityControlDescription throws exception with argument
ok 61 - setQualityControlDescription throws exception with no argument
ok 62 - setQualityControlDescription throws exception with too many argument
ok 63 - setQualityControlDescription accepts undef
ok 64 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 66 - qualityControlDescription->other() is a valid Bio::MAGE::Association::End
ok 67 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 68 - qualityControlDescription->self() is a valid Bio::MAGE::Association::End
ok 69 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Description::Description'
ok 70 - setNormalizationDescription returns value
ok 71 - getNormalizationDescription fetches correct value
ok 72 - setNormalizationDescription throws exception with bad argument
ok 73 - getNormalizationDescription throws exception with argument
ok 74 - setNormalizationDescription throws exception with no argument
ok 75 - setNormalizationDescription throws exception with too many argument
ok 76 - setNormalizationDescription accepts undef
ok 77 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 79 - normalizationDescription->other() is a valid Bio::MAGE::Association::End
ok 80 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 81 - normalizationDescription->self() is a valid Bio::MAGE::Association::End
ok 82 - auditTrail set in new()
ok 83 - setAuditTrail returns correct value
ok 84 - getAuditTrail fetches correct value
ok 85 - addAuditTrail returns number of items in list
ok 86 - addAuditTrail adds correct value
ok 87 - setAuditTrail throws exception with non-array argument
ok 88 - setAuditTrail throws exception with bad argument array
ok 89 - addAuditTrail throws exception with no arguments
ok 90 - addAuditTrail throws exception with bad array
ok 91 - setAuditTrail accepts empty array ref
ok 92 - getAuditTrail throws exception with argument
ok 93 - setAuditTrail throws exception with no argument
ok 94 - setAuditTrail throws exception with too many argument
ok 95 - setAuditTrail accepts undef
ok 96 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 98 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 99 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 100 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 101 - propertySets set in new()
ok 102 - setPropertySets returns correct value
ok 103 - getPropertySets fetches correct value
ok 104 - addPropertySets returns number of items in list
ok 105 - addPropertySets adds correct value
ok 106 - setPropertySets throws exception with non-array argument
ok 107 - setPropertySets throws exception with bad argument array
ok 108 - addPropertySets throws exception with no arguments
ok 109 - addPropertySets throws exception with bad array
ok 110 - setPropertySets accepts empty array ref
ok 111 - getPropertySets throws exception with argument
ok 112 - setPropertySets throws exception with no argument
ok 113 - setPropertySets throws exception with too many argument
ok 114 - setPropertySets accepts undef
ok 115 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 117 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 118 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 119 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 120 - topLevelBioAssays set in new()
ok 121 - setTopLevelBioAssays returns correct value
ok 122 - getTopLevelBioAssays fetches correct value
ok 123 - addTopLevelBioAssays returns number of items in list
ok 124 - addTopLevelBioAssays adds correct value
ok 125 - setTopLevelBioAssays throws exception with non-array argument
ok 126 - setTopLevelBioAssays throws exception with bad argument array
ok 127 - addTopLevelBioAssays throws exception with no arguments
ok 128 - addTopLevelBioAssays throws exception with bad array
ok 129 - setTopLevelBioAssays accepts empty array ref
ok 130 - getTopLevelBioAssays throws exception with argument
ok 131 - setTopLevelBioAssays throws exception with no argument
ok 132 - setTopLevelBioAssays throws exception with too many argument
ok 133 - setTopLevelBioAssays accepts undef
ok 134 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 135 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 136 - topLevelBioAssays->other() is a valid Bio::MAGE::Association::End
ok 137 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 138 - topLevelBioAssays->self() is a valid Bio::MAGE::Association::End
ok 139 - descriptions set in new()
ok 140 - setDescriptions returns correct value
ok 141 - getDescriptions fetches correct value
ok 142 - addDescriptions returns number of items in list
ok 143 - addDescriptions adds correct value
ok 144 - setDescriptions throws exception with non-array argument
ok 145 - setDescriptions throws exception with bad argument array
ok 146 - addDescriptions throws exception with no arguments
ok 147 - addDescriptions throws exception with bad array
ok 148 - setDescriptions accepts empty array ref
ok 149 - getDescriptions throws exception with argument
ok 150 - setDescriptions throws exception with no argument
ok 151 - setDescriptions throws exception with too many argument
ok 152 - setDescriptions accepts undef
ok 153 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 155 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 156 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 157 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 158 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 159 - setSecurity returns value
ok 160 - getSecurity fetches correct value
ok 161 - setSecurity throws exception with bad argument
ok 162 - getSecurity throws exception with argument
ok 163 - setSecurity throws exception with no argument
ok 164 - setSecurity throws exception with too many argument
ok 165 - setSecurity accepts undef
ok 166 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 167 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 168 - security->other() is a valid Bio::MAGE::Association::End
ok 169 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 170 - security->self() is a valid Bio::MAGE::Association::End
ok 171 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable'
ok 172 - An object of class 'Bio::MAGE::Experiment::ExperimentDesign' isa 'Bio::MAGE::Describable'
ok
t/Extendable.t ...................
1..77
ok 1 - use Bio::MAGE::Extendable;
ok 2 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable'
ok 3 - package
ok 4 - class_name
ok 5 - propertySets set in new()
ok 6 - setPropertySets returns correct value
ok 7 - getPropertySets fetches correct value
ok 8 - addPropertySets returns number of items in list
ok 9 - addPropertySets adds correct value
ok 10 - setPropertySets throws exception with non-array argument
ok 11 - setPropertySets throws exception with bad argument array
ok 12 - addPropertySets throws exception with no arguments
ok 13 - addPropertySets throws exception with bad array
ok 14 - setPropertySets accepts empty array ref
ok 15 - getPropertySets throws exception with argument
ok 16 - setPropertySets throws exception with no argument
ok 17 - setPropertySets throws exception with too many argument
ok 18 - setPropertySets accepts undef
ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 21 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 23 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 24 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeValue' isa 'Bio::MAGE::HigherLevelAnalysis::NodeValue'
ok 25 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeValue' isa 'Bio::MAGE::Extendable'
ok 26 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Description::DatabaseEntry'
ok 27 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Extendable'
ok 28 - An object of class 'Bio::MAGE::ArrayDesign::ZoneLayout' isa 'Bio::MAGE::ArrayDesign::ZoneLayout'
ok 29 - An object of class 'Bio::MAGE::ArrayDesign::ZoneLayout' isa 'Bio::MAGE::Extendable'
ok 30 - An object of class 'Bio::MAGE::ArrayDesign::ZoneGroup' isa 'Bio::MAGE::ArrayDesign::ZoneGroup'
ok 31 - An object of class 'Bio::MAGE::ArrayDesign::ZoneGroup' isa 'Bio::MAGE::Extendable'
ok 32 - An object of class 'Bio::MAGE::Description::ExternalReference' isa 'Bio::MAGE::Description::ExternalReference'
ok 33 - An object of class 'Bio::MAGE::Description::ExternalReference' isa 'Bio::MAGE::Extendable'
ok 34 - An object of class 'Bio::MAGE::DesignElement::Position' isa 'Bio::MAGE::DesignElement::Position'
ok 35 - An object of class 'Bio::MAGE::DesignElement::Position' isa 'Bio::MAGE::Extendable'
ok 36 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 37 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Extendable'
ok 38 - An object of class 'Bio::MAGE::DesignElement::MismatchInformation' isa 'Bio::MAGE::DesignElement::MismatchInformation'
ok 39 - An object of class 'Bio::MAGE::DesignElement::MismatchInformation' isa 'Bio::MAGE::Extendable'
ok 40 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement'
ok 41 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Extendable'
ok 42 - An object of class 'Bio::MAGE::DesignElement::FeatureInformation' isa 'Bio::MAGE::DesignElement::FeatureInformation'
ok 43 - An object of class 'Bio::MAGE::DesignElement::FeatureInformation' isa 'Bio::MAGE::Extendable'
ok 44 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit'
ok 45 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Extendable'
ok 46 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMapping' isa 'Bio::MAGE::BioAssayData::BioAssayMapping'
ok 47 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMapping' isa 'Bio::MAGE::Extendable'
ok 48 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDatum' isa 'Bio::MAGE::BioAssayData::BioAssayDatum'
ok 49 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDatum' isa 'Bio::MAGE::Extendable'
ok 50 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable'
ok 51 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Extendable'
ok 52 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' isa 'Bio::MAGE::BioAssayData::QuantitationTypeMapping'
ok 53 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' isa 'Bio::MAGE::Extendable'
ok 54 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMapping' isa 'Bio::MAGE::BioAssayData::DesignElementMapping'
ok 55 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMapping' isa 'Bio::MAGE::Extendable'
ok 56 - An object of class 'Bio::MAGE::DesignElement::FeatureLocation' isa 'Bio::MAGE::DesignElement::FeatureLocation'
ok 57 - An object of class 'Bio::MAGE::DesignElement::FeatureLocation' isa 'Bio::MAGE::Extendable'
ok 58 - An object of class 'Bio::MAGE::Array::FeatureDefect' isa 'Bio::MAGE::Array::FeatureDefect'
ok 59 - An object of class 'Bio::MAGE::Array::FeatureDefect' isa 'Bio::MAGE::Extendable'
ok 60 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues'
ok 61 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::Extendable'
ok 62 - An object of class 'Bio::MAGE::Array::ArrayManufactureDeviation' isa 'Bio::MAGE::Array::ArrayManufactureDeviation'
ok 63 - An object of class 'Bio::MAGE::Array::ArrayManufactureDeviation' isa 'Bio::MAGE::Extendable'
ok 64 - An object of class 'Bio::MAGE::Array::PositionDelta' isa 'Bio::MAGE::Array::PositionDelta'
ok 65 - An object of class 'Bio::MAGE::Array::PositionDelta' isa 'Bio::MAGE::Extendable'
ok 66 - An object of class 'Bio::MAGE::Array::ZoneDefect' isa 'Bio::MAGE::Array::ZoneDefect'
ok 67 - An object of class 'Bio::MAGE::Array::ZoneDefect' isa 'Bio::MAGE::Extendable'
ok 68 - An object of class 'Bio::MAGE::Protocol::ParameterValue' isa 'Bio::MAGE::Protocol::ParameterValue'
ok 69 - An object of class 'Bio::MAGE::Protocol::ParameterValue' isa 'Bio::MAGE::Extendable'
ok 70 - An object of class 'Bio::MAGE::BioSequence::SeqFeatureLocation' isa 'Bio::MAGE::BioSequence::SeqFeatureLocation'
ok 71 - An object of class 'Bio::MAGE::BioSequence::SeqFeatureLocation' isa 'Bio::MAGE::Extendable'
ok 72 - An object of class 'Bio::MAGE::BioMaterial::CompoundMeasurement' isa 'Bio::MAGE::BioMaterial::CompoundMeasurement'
ok 73 - An object of class 'Bio::MAGE::BioMaterial::CompoundMeasurement' isa 'Bio::MAGE::Extendable'
ok 74 - An object of class 'Bio::MAGE::BioMaterial::BioMaterialMeasurement' isa 'Bio::MAGE::BioMaterial::BioMaterialMeasurement'
ok 75 - An object of class 'Bio::MAGE::BioMaterial::BioMaterialMeasurement' isa 'Bio::MAGE::Extendable'
ok 76 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::BioSequence::SequencePosition'
ok 77 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::Extendable'
ok
t/ExternalReference.t ............
1..49
ok 1 - use Bio::MAGE::Description::ExternalReference;
ok 2 - An object of class 'Bio::MAGE::Description::ExternalReference' isa 'Bio::MAGE::Description::ExternalReference'
ok 3 - package
ok 4 - class_name
ok 5 - exportedFromDB new
ok 6 - exportedFromDB getter/setter
ok 7 - exportedFromDB getter throws exception with argument
ok 8 - exportedFromDB setter throws exception with no argument
ok 9 - exportedFromDB setter throws exception with too many argument
ok 10 - exportedFromDB setter accepts undef
ok 11 - exportName new
ok 12 - exportName getter/setter
ok 13 - exportName getter throws exception with argument
ok 14 - exportName setter throws exception with no argument
ok 15 - exportName setter throws exception with too many argument
ok 16 - exportName setter accepts undef
ok 17 - exportedFromServer new
ok 18 - exportedFromServer getter/setter
ok 19 - exportedFromServer getter throws exception with argument
ok 20 - exportedFromServer setter throws exception with no argument
ok 21 - exportedFromServer setter throws exception with too many argument
ok 22 - exportedFromServer setter accepts undef
ok 23 - exportID new
ok 24 - exportID getter/setter
ok 25 - exportID getter throws exception with argument
ok 26 - exportID setter throws exception with no argument
ok 27 - exportID setter throws exception with too many argument
ok 28 - exportID setter accepts undef
ok 29 - propertySets set in new()
ok 30 - setPropertySets returns correct value
ok 31 - getPropertySets fetches correct value
ok 32 - addPropertySets returns number of items in list
ok 33 - addPropertySets adds correct value
ok 34 - setPropertySets throws exception with non-array argument
ok 35 - setPropertySets throws exception with bad argument array
ok 36 - addPropertySets throws exception with no arguments
ok 37 - addPropertySets throws exception with bad array
ok 38 - setPropertySets accepts empty array ref
ok 39 - getPropertySets throws exception with argument
ok 40 - setPropertySets throws exception with no argument
ok 41 - setPropertySets throws exception with too many argument
ok 42 - setPropertySets accepts undef
ok 43 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 45 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 47 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 48 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable'
ok 49 - An object of class 'Bio::MAGE::Description::ExternalReference' isa 'Bio::MAGE::Extendable'
ok
t/FactorValue.t ..................
1..127
ok 1 - use Bio::MAGE::Experiment::FactorValue;
ok 2 - An object of class 'Bio::MAGE::Experiment::FactorValue' isa 'Bio::MAGE::Experiment::FactorValue'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - An object of class 'Bio::MAGE::Experiment::ExperimentalFactor' isa 'Bio::MAGE::Experiment::ExperimentalFactor'
ok 18 - setExperimentalFactor returns value
ok 19 - getExperimentalFactor fetches correct value
ok 20 - setExperimentalFactor throws exception with bad argument
ok 21 - getExperimentalFactor throws exception with argument
ok 22 - setExperimentalFactor throws exception with no argument
ok 23 - setExperimentalFactor throws exception with too many argument
ok 24 - setExperimentalFactor accepts undef
ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 27 - experimentalFactor->other() is a valid Bio::MAGE::Association::End
ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 29 - experimentalFactor->self() is a valid Bio::MAGE::Association::End
ok 30 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement'
ok 31 - setMeasurement returns value
ok 32 - getMeasurement fetches correct value
ok 33 - setMeasurement throws exception with bad argument
ok 34 - getMeasurement throws exception with argument
ok 35 - setMeasurement throws exception with no argument
ok 36 - setMeasurement throws exception with too many argument
ok 37 - setMeasurement accepts undef
ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 40 - measurement->other() is a valid Bio::MAGE::Association::End
ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 42 - measurement->self() is a valid Bio::MAGE::Association::End
ok 43 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 44 - setValue returns value
ok 45 - getValue fetches correct value
ok 46 - setValue throws exception with bad argument
ok 47 - getValue throws exception with argument
ok 48 - setValue throws exception with no argument
ok 49 - setValue throws exception with too many argument
ok 50 - setValue accepts undef
ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 53 - value->other() is a valid Bio::MAGE::Association::End
ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 55 - value->self() is a valid Bio::MAGE::Association::End
ok 56 - descriptions set in new()
ok 57 - setDescriptions returns correct value
ok 58 - getDescriptions fetches correct value
ok 59 - addDescriptions returns number of items in list
ok 60 - addDescriptions adds correct value
ok 61 - setDescriptions throws exception with non-array argument
ok 62 - setDescriptions throws exception with bad argument array
ok 63 - addDescriptions throws exception with no arguments
ok 64 - addDescriptions throws exception with bad array
ok 65 - setDescriptions accepts empty array ref
ok 66 - getDescriptions throws exception with argument
ok 67 - setDescriptions throws exception with no argument
ok 68 - setDescriptions throws exception with too many argument
ok 69 - setDescriptions accepts undef
ok 70 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 72 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 73 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 74 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 75 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 76 - setSecurity returns value
ok 77 - getSecurity fetches correct value
ok 78 - setSecurity throws exception with bad argument
ok 79 - getSecurity throws exception with argument
ok 80 - setSecurity throws exception with no argument
ok 81 - setSecurity throws exception with too many argument
ok 82 - setSecurity accepts undef
ok 83 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 84 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 85 - security->other() is a valid Bio::MAGE::Association::End
ok 86 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 87 - security->self() is a valid Bio::MAGE::Association::End
ok 88 - auditTrail set in new()
ok 89 - setAuditTrail returns correct value
ok 90 - getAuditTrail fetches correct value
ok 91 - addAuditTrail returns number of items in list
ok 92 - addAuditTrail adds correct value
ok 93 - setAuditTrail throws exception with non-array argument
ok 94 - setAuditTrail throws exception with bad argument array
ok 95 - addAuditTrail throws exception with no arguments
ok 96 - addAuditTrail throws exception with bad array
ok 97 - setAuditTrail accepts empty array ref
ok 98 - getAuditTrail throws exception with argument
ok 99 - setAuditTrail throws exception with no argument
ok 100 - setAuditTrail throws exception with too many argument
ok 101 - setAuditTrail accepts undef
ok 102 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 103 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 104 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 105 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 106 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 107 - propertySets set in new()
ok 108 - setPropertySets returns correct value
ok 109 - getPropertySets fetches correct value
ok 110 - addPropertySets returns number of items in list
ok 111 - addPropertySets adds correct value
ok 112 - setPropertySets throws exception with non-array argument
ok 113 - setPropertySets throws exception with bad argument array
ok 114 - addPropertySets throws exception with no arguments
ok 115 - addPropertySets throws exception with bad array
ok 116 - setPropertySets accepts empty array ref
ok 117 - getPropertySets throws exception with argument
ok 118 - setPropertySets throws exception with no argument
ok 119 - setPropertySets throws exception with too many argument
ok 120 - setPropertySets accepts undef
ok 121 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 122 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 123 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 124 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 125 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 126 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 127 - An object of class 'Bio::MAGE::Experiment::FactorValue' isa 'Bio::MAGE::Identifiable'
ok
t/Failed.t .......................
1..171
ok 1 - use Bio::MAGE::QuantitationType::Failed;
ok 2 - An object of class 'Bio::MAGE::QuantitationType::Failed' isa 'Bio::MAGE::QuantitationType::Failed'
ok 3 - package
ok 4 - class_name
ok 5 - isBackground new
ok 6 - isBackground getter/setter
ok 7 - isBackground getter throws exception with argument
ok 8 - isBackground setter throws exception with no argument
ok 9 - isBackground setter throws exception with too many argument
ok 10 - isBackground setter accepts undef
ok 11 - identifier new
ok 12 - identifier getter/setter
ok 13 - identifier getter throws exception with argument
ok 14 - identifier setter throws exception with no argument
ok 15 - identifier setter throws exception with too many argument
ok 16 - identifier setter accepts undef
ok 17 - name new
ok 18 - name getter/setter
ok 19 - name getter throws exception with argument
ok 20 - name setter throws exception with no argument
ok 21 - name setter throws exception with too many argument
ok 22 - name setter accepts undef
ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 24 - setDataType returns value
ok 25 - getDataType fetches correct value
ok 26 - setDataType throws exception with bad argument
ok 27 - getDataType throws exception with argument
ok 28 - setDataType throws exception with no argument
ok 29 - setDataType throws exception with too many argument
ok 30 - setDataType accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - dataType->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - dataType->self() is a valid Bio::MAGE::Association::End
ok 36 - descriptions set in new()
ok 37 - setDescriptions returns correct value
ok 38 - getDescriptions fetches correct value
ok 39 - addDescriptions returns number of items in list
ok 40 - addDescriptions adds correct value
ok 41 - setDescriptions throws exception with non-array argument
ok 42 - setDescriptions throws exception with bad argument array
ok 43 - addDescriptions throws exception with no arguments
ok 44 - addDescriptions throws exception with bad array
ok 45 - setDescriptions accepts empty array ref
ok 46 - getDescriptions throws exception with argument
ok 47 - setDescriptions throws exception with no argument
ok 48 - setDescriptions throws exception with too many argument
ok 49 - setDescriptions accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 55 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 56 - setScale returns value
ok 57 - getScale fetches correct value
ok 58 - setScale throws exception with bad argument
ok 59 - getScale throws exception with argument
ok 60 - setScale throws exception with no argument
ok 61 - setScale throws exception with too many argument
ok 62 - setScale accepts undef
ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 65 - scale->other() is a valid Bio::MAGE::Association::End
ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 67 - scale->self() is a valid Bio::MAGE::Association::End
ok 68 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 69 - setSecurity returns value
ok 70 - getSecurity fetches correct value
ok 71 - setSecurity throws exception with bad argument
ok 72 - getSecurity throws exception with argument
ok 73 - setSecurity throws exception with no argument
ok 74 - setSecurity throws exception with too many argument
ok 75 - setSecurity accepts undef
ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 78 - security->other() is a valid Bio::MAGE::Association::End
ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 80 - security->self() is a valid Bio::MAGE::Association::End
ok 81 - auditTrail set in new()
ok 82 - setAuditTrail returns correct value
ok 83 - getAuditTrail fetches correct value
ok 84 - addAuditTrail returns number of items in list
ok 85 - addAuditTrail adds correct value
ok 86 - setAuditTrail throws exception with non-array argument
ok 87 - setAuditTrail throws exception with bad argument array
ok 88 - addAuditTrail throws exception with no arguments
ok 89 - addAuditTrail throws exception with bad array
ok 90 - setAuditTrail accepts empty array ref
ok 91 - getAuditTrail throws exception with argument
ok 92 - setAuditTrail throws exception with no argument
ok 93 - setAuditTrail throws exception with too many argument
ok 94 - setAuditTrail accepts undef
ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 100 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel'
ok 101 - setChannel returns value
ok 102 - getChannel fetches correct value
ok 103 - setChannel throws exception with bad argument
ok 104 - getChannel throws exception with argument
ok 105 - setChannel throws exception with no argument
ok 106 - setChannel throws exception with too many argument
ok 107 - setChannel accepts undef
ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 110 - channel->other() is a valid Bio::MAGE::Association::End
ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 112 - channel->self() is a valid Bio::MAGE::Association::End
ok 113 - propertySets set in new()
ok 114 - setPropertySets returns correct value
ok 115 - getPropertySets fetches correct value
ok 116 - addPropertySets returns number of items in list
ok 117 - addPropertySets adds correct value
ok 118 - setPropertySets throws exception with non-array argument
ok 119 - setPropertySets throws exception with bad argument array
ok 120 - addPropertySets throws exception with no arguments
ok 121 - addPropertySets throws exception with bad array
ok 122 - setPropertySets accepts empty array ref
ok 123 - getPropertySets throws exception with argument
ok 124 - setPropertySets throws exception with no argument
ok 125 - setPropertySets throws exception with too many argument
ok 126 - setPropertySets accepts undef
ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 132 - confidenceIndicators set in new()
ok 133 - setConfidenceIndicators returns correct value
ok 134 - getConfidenceIndicators fetches correct value
ok 135 - addConfidenceIndicators returns number of items in list
ok 136 - addConfidenceIndicators adds correct value
ok 137 - setConfidenceIndicators throws exception with non-array argument
ok 138 - setConfidenceIndicators throws exception with bad argument array
ok 139 - addConfidenceIndicators throws exception with no arguments
ok 140 - addConfidenceIndicators throws exception with bad array
ok 141 - setConfidenceIndicators accepts empty array ref
ok 142 - getConfidenceIndicators throws exception with argument
ok 143 - setConfidenceIndicators throws exception with no argument
ok 144 - setConfidenceIndicators throws exception with too many argument
ok 145 - setConfidenceIndicators accepts undef
ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End
ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End
ok 151 - quantitationTypeMaps set in new()
ok 152 - setQuantitationTypeMaps returns correct value
ok 153 - getQuantitationTypeMaps fetches correct value
ok 154 - addQuantitationTypeMaps returns number of items in list
ok 155 - addQuantitationTypeMaps adds correct value
ok 156 - setQuantitationTypeMaps throws exception with non-array argument
ok 157 - setQuantitationTypeMaps throws exception with bad argument array
ok 158 - addQuantitationTypeMaps throws exception with no arguments
ok 159 - addQuantitationTypeMaps throws exception with bad array
ok 160 - setQuantitationTypeMaps accepts empty array ref
ok 161 - getQuantitationTypeMaps throws exception with argument
ok 162 - setQuantitationTypeMaps throws exception with no argument
ok 163 - setQuantitationTypeMaps throws exception with too many argument
ok 164 - setQuantitationTypeMaps accepts undef
ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End
ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End
ok 170 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType'
ok 171 - An object of class 'Bio::MAGE::QuantitationType::Failed' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType'
ok
t/Feature.t ......................
1..191
ok 1 - use Bio::MAGE::DesignElement::Feature;
ok 2 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::Feature'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 18 - setControlType returns value
ok 19 - getControlType fetches correct value
ok 20 - setControlType throws exception with bad argument
ok 21 - getControlType throws exception with argument
ok 22 - setControlType throws exception with no argument
ok 23 - setControlType throws exception with too many argument
ok 24 - setControlType accepts undef
ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 27 - controlType->other() is a valid Bio::MAGE::Association::End
ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 29 - controlType->self() is a valid Bio::MAGE::Association::End
ok 30 - An object of class 'Bio::MAGE::ArrayDesign::Zone' isa 'Bio::MAGE::ArrayDesign::Zone'
ok 31 - setZone returns value
ok 32 - getZone fetches correct value
ok 33 - setZone throws exception with bad argument
ok 34 - getZone throws exception with argument
ok 35 - setZone throws exception with no argument
ok 36 - setZone throws exception with too many argument
ok 37 - setZone accepts undef
ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 40 - zone->other() is a valid Bio::MAGE::Association::End
ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 42 - zone->self() is a valid Bio::MAGE::Association::End
ok 43 - controlledFeatures set in new()
ok 44 - setControlledFeatures returns correct value
ok 45 - getControlledFeatures fetches correct value
ok 46 - addControlledFeatures returns number of items in list
ok 47 - addControlledFeatures adds correct value
ok 48 - setControlledFeatures throws exception with non-array argument
ok 49 - setControlledFeatures throws exception with bad argument array
ok 50 - addControlledFeatures throws exception with no arguments
ok 51 - addControlledFeatures throws exception with bad array
ok 52 - setControlledFeatures accepts empty array ref
ok 53 - getControlledFeatures throws exception with argument
ok 54 - setControlledFeatures throws exception with no argument
ok 55 - setControlledFeatures throws exception with too many argument
ok 56 - setControlledFeatures accepts undef
ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 59 - controlledFeatures->other() is a valid Bio::MAGE::Association::End
ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 61 - controlledFeatures->self() is a valid Bio::MAGE::Association::End
ok 62 - An object of class 'Bio::MAGE::DesignElement::Position' isa 'Bio::MAGE::DesignElement::Position'
ok 63 - setPosition returns value
ok 64 - getPosition fetches correct value
ok 65 - setPosition throws exception with bad argument
ok 66 - getPosition throws exception with argument
ok 67 - setPosition throws exception with no argument
ok 68 - setPosition throws exception with too many argument
ok 69 - setPosition accepts undef
ok 70 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 72 - position->other() is a valid Bio::MAGE::Association::End
ok 73 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 74 - position->self() is a valid Bio::MAGE::Association::End
ok 75 - auditTrail set in new()
ok 76 - setAuditTrail returns correct value
ok 77 - getAuditTrail fetches correct value
ok 78 - addAuditTrail returns number of items in list
ok 79 - addAuditTrail adds correct value
ok 80 - setAuditTrail throws exception with non-array argument
ok 81 - setAuditTrail throws exception with bad argument array
ok 82 - addAuditTrail throws exception with no arguments
ok 83 - addAuditTrail throws exception with bad array
ok 84 - setAuditTrail accepts empty array ref
ok 85 - getAuditTrail throws exception with argument
ok 86 - setAuditTrail throws exception with no argument
ok 87 - setAuditTrail throws exception with too many argument
ok 88 - setAuditTrail accepts undef
ok 89 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 90 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 91 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 92 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 93 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 94 - propertySets set in new()
ok 95 - setPropertySets returns correct value
ok 96 - getPropertySets fetches correct value
ok 97 - addPropertySets returns number of items in list
ok 98 - addPropertySets adds correct value
ok 99 - setPropertySets throws exception with non-array argument
ok 100 - setPropertySets throws exception with bad argument array
ok 101 - addPropertySets throws exception with no arguments
ok 102 - addPropertySets throws exception with bad array
ok 103 - setPropertySets accepts empty array ref
ok 104 - getPropertySets throws exception with argument
ok 105 - setPropertySets throws exception with no argument
ok 106 - setPropertySets throws exception with too many argument
ok 107 - setPropertySets accepts undef
ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 110 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 112 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 113 - descriptions set in new()
ok 114 - setDescriptions returns correct value
ok 115 - getDescriptions fetches correct value
ok 116 - addDescriptions returns number of items in list
ok 117 - addDescriptions adds correct value
ok 118 - setDescriptions throws exception with non-array argument
ok 119 - setDescriptions throws exception with bad argument array
ok 120 - addDescriptions throws exception with no arguments
ok 121 - addDescriptions throws exception with bad array
ok 122 - setDescriptions accepts empty array ref
ok 123 - getDescriptions throws exception with argument
ok 124 - setDescriptions throws exception with no argument
ok 125 - setDescriptions throws exception with too many argument
ok 126 - setDescriptions accepts undef
ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 129 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 131 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 132 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 133 - setSecurity returns value
ok 134 - getSecurity fetches correct value
ok 135 - setSecurity throws exception with bad argument
ok 136 - getSecurity throws exception with argument
ok 137 - setSecurity throws exception with no argument
ok 138 - setSecurity throws exception with too many argument
ok 139 - setSecurity accepts undef
ok 140 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 141 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 142 - security->other() is a valid Bio::MAGE::Association::End
ok 143 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 144 - security->self() is a valid Bio::MAGE::Association::End
ok 145 - An object of class 'Bio::MAGE::ArrayDesign::FeatureGroup' isa 'Bio::MAGE::ArrayDesign::FeatureGroup'
ok 146 - setFeatureGroup returns value
ok 147 - getFeatureGroup fetches correct value
ok 148 - setFeatureGroup throws exception with bad argument
ok 149 - getFeatureGroup throws exception with argument
ok 150 - setFeatureGroup throws exception with no argument
ok 151 - setFeatureGroup throws exception with too many argument
ok 152 - setFeatureGroup accepts undef
ok 153 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 155 - featureGroup->other() is a valid Bio::MAGE::Association::End
ok 156 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 157 - featureGroup->self() is a valid Bio::MAGE::Association::End
ok 158 - An object of class 'Bio::MAGE::DesignElement::FeatureLocation' isa 'Bio::MAGE::DesignElement::FeatureLocation'
ok 159 - setFeatureLocation returns value
ok 160 - getFeatureLocation fetches correct value
ok 161 - setFeatureLocation throws exception with bad argument
ok 162 - getFeatureLocation throws exception with argument
ok 163 - setFeatureLocation throws exception with no argument
ok 164 - setFeatureLocation throws exception with too many argument
ok 165 - setFeatureLocation accepts undef
ok 166 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 167 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 168 - featureLocation->other() is a valid Bio::MAGE::Association::End
ok 169 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 170 - featureLocation->self() is a valid Bio::MAGE::Association::End
ok 171 - controlFeatures set in new()
ok 172 - setControlFeatures returns correct value
ok 173 - getControlFeatures fetches correct value
ok 174 - addControlFeatures returns number of items in list
ok 175 - addControlFeatures adds correct value
ok 176 - setControlFeatures throws exception with non-array argument
ok 177 - setControlFeatures throws exception with bad argument array
ok 178 - addControlFeatures throws exception with no arguments
ok 179 - addControlFeatures throws exception with bad array
ok 180 - setControlFeatures accepts empty array ref
ok 181 - getControlFeatures throws exception with argument
ok 182 - setControlFeatures throws exception with no argument
ok 183 - setControlFeatures throws exception with too many argument
ok 184 - setControlFeatures accepts undef
ok 185 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 186 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 187 - controlFeatures->other() is a valid Bio::MAGE::Association::End
ok 188 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 189 - controlFeatures->self() is a valid Bio::MAGE::Association::End
ok 190 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::DesignElement::DesignElement'
ok 191 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::DesignElement'
ok
t/FeatureDefect.t ................
1..64
ok 1 - use Bio::MAGE::Array::FeatureDefect;
ok 2 - An object of class 'Bio::MAGE::Array::FeatureDefect' isa 'Bio::MAGE::Array::FeatureDefect'
ok 3 - package
ok 4 - class_name
ok 5 - An object of class 'Bio::MAGE::Array::PositionDelta' isa 'Bio::MAGE::Array::PositionDelta'
ok 6 - setPositionDelta returns value
ok 7 - getPositionDelta fetches correct value
ok 8 - setPositionDelta throws exception with bad argument
ok 9 - getPositionDelta throws exception with argument
ok 10 - setPositionDelta throws exception with no argument
ok 11 - setPositionDelta throws exception with too many argument
ok 12 - setPositionDelta accepts undef
ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 15 - positionDelta->other() is a valid Bio::MAGE::Association::End
ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 17 - positionDelta->self() is a valid Bio::MAGE::Association::End
ok 18 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::Feature'
ok 19 - setFeature returns value
ok 20 - getFeature fetches correct value
ok 21 - setFeature throws exception with bad argument
ok 22 - getFeature throws exception with argument
ok 23 - setFeature throws exception with no argument
ok 24 - setFeature throws exception with too many argument
ok 25 - setFeature accepts undef
ok 26 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 27 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 28 - feature->other() is a valid Bio::MAGE::Association::End
ok 29 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 30 - feature->self() is a valid Bio::MAGE::Association::End
ok 31 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 32 - setDefectType returns value
ok 33 - getDefectType fetches correct value
ok 34 - setDefectType throws exception with bad argument
ok 35 - getDefectType throws exception with argument
ok 36 - setDefectType throws exception with no argument
ok 37 - setDefectType throws exception with too many argument
ok 38 - setDefectType accepts undef
ok 39 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 41 - defectType->other() is a valid Bio::MAGE::Association::End
ok 42 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 43 - defectType->self() is a valid Bio::MAGE::Association::End
ok 44 - propertySets set in new()
ok 45 - setPropertySets returns correct value
ok 46 - getPropertySets fetches correct value
ok 47 - addPropertySets returns number of items in list
ok 48 - addPropertySets adds correct value
ok 49 - setPropertySets throws exception with non-array argument
ok 50 - setPropertySets throws exception with bad argument array
ok 51 - addPropertySets throws exception with no arguments
ok 52 - addPropertySets throws exception with bad array
ok 53 - setPropertySets accepts empty array ref
ok 54 - getPropertySets throws exception with argument
ok 55 - setPropertySets throws exception with no argument
ok 56 - setPropertySets throws exception with too many argument
ok 57 - setPropertySets accepts undef
ok 58 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 59 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 60 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 61 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 62 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 63 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable'
ok 64 - An object of class 'Bio::MAGE::Array::FeatureDefect' isa 'Bio::MAGE::Extendable'
ok
t/FeatureDimension.t .............
1..107
ok 1 - use Bio::MAGE::BioAssayData::FeatureDimension;
ok 2 - An object of class 'Bio::MAGE::BioAssayData::FeatureDimension' isa 'Bio::MAGE::BioAssayData::FeatureDimension'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - descriptions set in new()
ok 18 - setDescriptions returns correct value
ok 19 - getDescriptions fetches correct value
ok 20 - addDescriptions returns number of items in list
ok 21 - addDescriptions adds correct value
ok 22 - setDescriptions throws exception with non-array argument
ok 23 - setDescriptions throws exception with bad argument array
ok 24 - addDescriptions throws exception with no arguments
ok 25 - addDescriptions throws exception with bad array
ok 26 - setDescriptions accepts empty array ref
ok 27 - getDescriptions throws exception with argument
ok 28 - setDescriptions throws exception with no argument
ok 29 - setDescriptions throws exception with too many argument
ok 30 - setDescriptions accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 36 - auditTrail set in new()
ok 37 - setAuditTrail returns correct value
ok 38 - getAuditTrail fetches correct value
ok 39 - addAuditTrail returns number of items in list
ok 40 - addAuditTrail adds correct value
ok 41 - setAuditTrail throws exception with non-array argument
ok 42 - setAuditTrail throws exception with bad argument array
ok 43 - addAuditTrail throws exception with no arguments
ok 44 - addAuditTrail throws exception with bad array
ok 45 - setAuditTrail accepts empty array ref
ok 46 - getAuditTrail throws exception with argument
ok 47 - setAuditTrail throws exception with no argument
ok 48 - setAuditTrail throws exception with too many argument
ok 49 - setAuditTrail accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 56 - setSecurity returns value
ok 57 - getSecurity fetches correct value
ok 58 - setSecurity throws exception with bad argument
ok 59 - getSecurity throws exception with argument
ok 60 - setSecurity throws exception with no argument
ok 61 - setSecurity throws exception with too many argument
ok 62 - setSecurity accepts undef
ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 65 - security->other() is a valid Bio::MAGE::Association::End
ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 67 - security->self() is a valid Bio::MAGE::Association::End
ok 68 - propertySets set in new()
ok 69 - setPropertySets returns correct value
ok 70 - getPropertySets fetches correct value
ok 71 - addPropertySets returns number of items in list
ok 72 - addPropertySets adds correct value
ok 73 - setPropertySets throws exception with non-array argument
ok 74 - setPropertySets throws exception with bad argument array
ok 75 - addPropertySets throws exception with no arguments
ok 76 - addPropertySets throws exception with bad array
ok 77 - setPropertySets accepts empty array ref
ok 78 - getPropertySets throws exception with argument
ok 79 - setPropertySets throws exception with no argument
ok 80 - setPropertySets throws exception with too many argument
ok 81 - setPropertySets accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 87 - containedFeatures set in new()
ok 88 - setContainedFeatures returns correct value
ok 89 - getContainedFeatures fetches correct value
ok 90 - addContainedFeatures returns number of items in list
ok 91 - addContainedFeatures adds correct value
ok 92 - setContainedFeatures throws exception with non-array argument
ok 93 - setContainedFeatures throws exception with bad argument array
ok 94 - addContainedFeatures throws exception with no arguments
ok 95 - addContainedFeatures throws exception with bad array
ok 96 - setContainedFeatures accepts empty array ref
ok 97 - getContainedFeatures throws exception with argument
ok 98 - setContainedFeatures throws exception with no argument
ok 99 - setContainedFeatures throws exception with too many argument
ok 100 - setContainedFeatures accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - containedFeatures->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - containedFeatures->self() is a valid Bio::MAGE::Association::End
ok 106 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension'
ok 107 - An object of class 'Bio::MAGE::BioAssayData::FeatureDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension'
ok
t/FeatureExtraction.t ............
1..133
ok 1 - use Bio::MAGE::BioAssay::FeatureExtraction;
ok 2 - An object of class 'Bio::MAGE::BioAssay::FeatureExtraction' isa 'Bio::MAGE::BioAssay::FeatureExtraction'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay'
ok 18 - setPhysicalBioAssaySource returns value
ok 19 - getPhysicalBioAssaySource fetches correct value
ok 20 - setPhysicalBioAssaySource throws exception with bad argument
ok 21 - getPhysicalBioAssaySource throws exception with argument
ok 22 - setPhysicalBioAssaySource throws exception with no argument
ok 23 - setPhysicalBioAssaySource throws exception with too many argument
ok 24 - setPhysicalBioAssaySource accepts undef
ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 27 - physicalBioAssaySource->other() is a valid Bio::MAGE::Association::End
ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 29 - physicalBioAssaySource->self() is a valid Bio::MAGE::Association::End
ok 30 - protocolApplications set in new()
ok 31 - setProtocolApplications returns correct value
ok 32 - getProtocolApplications fetches correct value
ok 33 - addProtocolApplications returns number of items in list
ok 34 - addProtocolApplications adds correct value
ok 35 - setProtocolApplications throws exception with non-array argument
ok 36 - setProtocolApplications throws exception with bad argument array
ok 37 - addProtocolApplications throws exception with no arguments
ok 38 - addProtocolApplications throws exception with bad array
ok 39 - setProtocolApplications accepts empty array ref
ok 40 - getProtocolApplications throws exception with argument
ok 41 - setProtocolApplications throws exception with no argument
ok 42 - setProtocolApplications throws exception with too many argument
ok 43 - setProtocolApplications accepts undef
ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 46 - protocolApplications->other() is a valid Bio::MAGE::Association::End
ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 48 - protocolApplications->self() is a valid Bio::MAGE::Association::End
ok 49 - An object of class 'Bio::MAGE::BioAssay::MeasuredBioAssay' isa 'Bio::MAGE::BioAssay::MeasuredBioAssay'
ok 50 - setMeasuredBioAssayTarget returns value
ok 51 - getMeasuredBioAssayTarget fetches correct value
ok 52 - setMeasuredBioAssayTarget throws exception with bad argument
ok 53 - getMeasuredBioAssayTarget throws exception with argument
ok 54 - setMeasuredBioAssayTarget throws exception with no argument
ok 55 - setMeasuredBioAssayTarget throws exception with too many argument
ok 56 - setMeasuredBioAssayTarget accepts undef
ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 59 - measuredBioAssayTarget->other() is a valid Bio::MAGE::Association::End
ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 61 - measuredBioAssayTarget->self() is a valid Bio::MAGE::Association::End
ok 62 - descriptions set in new()
ok 63 - setDescriptions returns correct value
ok 64 - getDescriptions fetches correct value
ok 65 - addDescriptions returns number of items in list
ok 66 - addDescriptions adds correct value
ok 67 - setDescriptions throws exception with non-array argument
ok 68 - setDescriptions throws exception with bad argument array
ok 69 - addDescriptions throws exception with no arguments
ok 70 - addDescriptions throws exception with bad array
ok 71 - setDescriptions accepts empty array ref
ok 72 - getDescriptions throws exception with argument
ok 73 - setDescriptions throws exception with no argument
ok 74 - setDescriptions throws exception with too many argument
ok 75 - setDescriptions accepts undef
ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 78 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 80 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 81 - auditTrail set in new()
ok 82 - setAuditTrail returns correct value
ok 83 - getAuditTrail fetches correct value
ok 84 - addAuditTrail returns number of items in list
ok 85 - addAuditTrail adds correct value
ok 86 - setAuditTrail throws exception with non-array argument
ok 87 - setAuditTrail throws exception with bad argument array
ok 88 - addAuditTrail throws exception with no arguments
ok 89 - addAuditTrail throws exception with bad array
ok 90 - setAuditTrail accepts empty array ref
ok 91 - getAuditTrail throws exception with argument
ok 92 - setAuditTrail throws exception with no argument
ok 93 - setAuditTrail throws exception with too many argument
ok 94 - setAuditTrail accepts undef
ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 100 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 101 - setSecurity returns value
ok 102 - getSecurity fetches correct value
ok 103 - setSecurity throws exception with bad argument
ok 104 - getSecurity throws exception with argument
ok 105 - setSecurity throws exception with no argument
ok 106 - setSecurity throws exception with too many argument
ok 107 - setSecurity accepts undef
ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 110 - security->other() is a valid Bio::MAGE::Association::End
ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 112 - security->self() is a valid Bio::MAGE::Association::End
ok 113 - propertySets set in new()
ok 114 - setPropertySets returns correct value
ok 115 - getPropertySets fetches correct value
ok 116 - addPropertySets returns number of items in list
ok 117 - addPropertySets adds correct value
ok 118 - setPropertySets throws exception with non-array argument
ok 119 - setPropertySets throws exception with bad argument array
ok 120 - addPropertySets throws exception with no arguments
ok 121 - addPropertySets throws exception with bad array
ok 122 - setPropertySets accepts empty array ref
ok 123 - getPropertySets throws exception with argument
ok 124 - setPropertySets throws exception with no argument
ok 125 - setPropertySets throws exception with too many argument
ok 126 - setPropertySets accepts undef
ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 132 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent'
ok 133 - An object of class 'Bio::MAGE::BioAssay::FeatureExtraction' isa 'Bio::MAGE::BioEvent::BioEvent'
ok
t/FeatureGroup.t .................
1..196
ok 1 - use Bio::MAGE::ArrayDesign::FeatureGroup;
ok 2 - An object of class 'Bio::MAGE::ArrayDesign::FeatureGroup' isa 'Bio::MAGE::ArrayDesign::FeatureGroup'
ok 3 - package
ok 4 - class_name
ok 5 - featureLength new
ok 6 - featureLength getter/setter
ok 7 - featureLength getter throws exception with argument
ok 8 - featureLength setter throws exception with no argument
ok 9 - featureLength setter throws exception with too many argument
ok 10 - featureLength setter accepts undef
ok 11 - featureWidth new
ok 12 - featureWidth getter/setter
ok 13 - featureWidth getter throws exception with argument
ok 14 - featureWidth setter throws exception with no argument
ok 15 - featureWidth setter throws exception with too many argument
ok 16 - featureWidth setter accepts undef
ok 17 - identifier new
ok 18 - identifier getter/setter
ok 19 - identifier getter throws exception with argument
ok 20 - identifier setter throws exception with no argument
ok 21 - identifier setter throws exception with too many argument
ok 22 - identifier setter accepts undef
ok 23 - featureHeight new
ok 24 - featureHeight getter/setter
ok 25 - featureHeight getter throws exception with argument
ok 26 - featureHeight setter throws exception with no argument
ok 27 - featureHeight setter throws exception with too many argument
ok 28 - featureHeight setter accepts undef
ok 29 - name new
ok 30 - name getter/setter
ok 31 - name getter throws exception with argument
ok 32 - name setter throws exception with no argument
ok 33 - name setter throws exception with too many argument
ok 34 - name setter accepts undef
ok 35 - types set in new()
ok 36 - setTypes returns correct value
ok 37 - getTypes fetches correct value
ok 38 - addTypes returns number of items in list
ok 39 - addTypes adds correct value
ok 40 - setTypes throws exception with non-array argument
ok 41 - setTypes throws exception with bad argument array
ok 42 - addTypes throws exception with no arguments
ok 43 - addTypes throws exception with bad array
ok 44 - setTypes accepts empty array ref
ok 45 - getTypes throws exception with argument
ok 46 - setTypes throws exception with no argument
ok 47 - setTypes throws exception with too many argument
ok 48 - setTypes accepts undef
ok 49 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 50 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 51 - types->other() is a valid Bio::MAGE::Association::End
ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 53 - types->self() is a valid Bio::MAGE::Association::End
ok 54 - features set in new()
ok 55 - setFeatures returns correct value
ok 56 - getFeatures fetches correct value
ok 57 - addFeatures returns number of items in list
ok 58 - addFeatures adds correct value
ok 59 - setFeatures throws exception with non-array argument
ok 60 - setFeatures throws exception with bad argument array
ok 61 - addFeatures throws exception with no arguments
ok 62 - addFeatures throws exception with bad array
ok 63 - setFeatures accepts empty array ref
ok 64 - getFeatures throws exception with argument
ok 65 - setFeatures throws exception with no argument
ok 66 - setFeatures throws exception with too many argument
ok 67 - setFeatures accepts undef
ok 68 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 69 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 70 - features->other() is a valid Bio::MAGE::Association::End
ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 72 - features->self() is a valid Bio::MAGE::Association::End
ok 73 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 74 - setFeatureShape returns value
ok 75 - getFeatureShape fetches correct value
ok 76 - setFeatureShape throws exception with bad argument
ok 77 - getFeatureShape throws exception with argument
ok 78 - setFeatureShape throws exception with no argument
ok 79 - setFeatureShape throws exception with too many argument
ok 80 - setFeatureShape accepts undef
ok 81 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 82 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 83 - featureShape->other() is a valid Bio::MAGE::Association::End
ok 84 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 85 - featureShape->self() is a valid Bio::MAGE::Association::End
ok 86 - auditTrail set in new()
ok 87 - setAuditTrail returns correct value
ok 88 - getAuditTrail fetches correct value
ok 89 - addAuditTrail returns number of items in list
ok 90 - addAuditTrail adds correct value
ok 91 - setAuditTrail throws exception with non-array argument
ok 92 - setAuditTrail throws exception with bad argument array
ok 93 - addAuditTrail throws exception with no arguments
ok 94 - addAuditTrail throws exception with bad array
ok 95 - setAuditTrail accepts empty array ref
ok 96 - getAuditTrail throws exception with argument
ok 97 - setAuditTrail throws exception with no argument
ok 98 - setAuditTrail throws exception with too many argument
ok 99 - setAuditTrail accepts undef
ok 100 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 101 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 102 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 103 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 104 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 105 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 106 - setTechnologyType returns value
ok 107 - getTechnologyType fetches correct value
ok 108 - setTechnologyType throws exception with bad argument
ok 109 - getTechnologyType throws exception with argument
ok 110 - setTechnologyType throws exception with no argument
ok 111 - setTechnologyType throws exception with too many argument
ok 112 - setTechnologyType accepts undef
ok 113 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 114 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 115 - technologyType->other() is a valid Bio::MAGE::Association::End
ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 117 - technologyType->self() is a valid Bio::MAGE::Association::End
ok 118 - propertySets set in new()
ok 119 - setPropertySets returns correct value
ok 120 - getPropertySets fetches correct value
ok 121 - addPropertySets returns number of items in list
ok 122 - addPropertySets adds correct value
ok 123 - setPropertySets throws exception with non-array argument
ok 124 - setPropertySets throws exception with bad argument array
ok 125 - addPropertySets throws exception with no arguments
ok 126 - addPropertySets throws exception with bad array
ok 127 - setPropertySets accepts empty array ref
ok 128 - getPropertySets throws exception with argument
ok 129 - setPropertySets throws exception with no argument
ok 130 - setPropertySets throws exception with too many argument
ok 131 - setPropertySets accepts undef
ok 132 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 133 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 134 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 135 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 136 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 137 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 138 - setSpecies returns value
ok 139 - getSpecies fetches correct value
ok 140 - setSpecies throws exception with bad argument
ok 141 - getSpecies throws exception with argument
ok 142 - setSpecies throws exception with no argument
ok 143 - setSpecies throws exception with too many argument
ok 144 - setSpecies accepts undef
ok 145 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 146 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 147 - species->other() is a valid Bio::MAGE::Association::End
ok 148 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 149 - species->self() is a valid Bio::MAGE::Association::End
ok 150 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit'
ok 151 - setDistanceUnit returns value
ok 152 - getDistanceUnit fetches correct value
ok 153 - setDistanceUnit throws exception with bad argument
ok 154 - getDistanceUnit throws exception with argument
ok 155 - setDistanceUnit throws exception with no argument
ok 156 - setDistanceUnit throws exception with too many argument
ok 157 - setDistanceUnit accepts undef
ok 158 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 159 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 160 - distanceUnit->other() is a valid Bio::MAGE::Association::End
ok 161 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 162 - distanceUnit->self() is a valid Bio::MAGE::Association::End
ok 163 - descriptions set in new()
ok 164 - setDescriptions returns correct value
ok 165 - getDescriptions fetches correct value
ok 166 - addDescriptions returns number of items in list
ok 167 - addDescriptions adds correct value
ok 168 - setDescriptions throws exception with non-array argument
ok 169 - setDescriptions throws exception with bad argument array
ok 170 - addDescriptions throws exception with no arguments
ok 171 - addDescriptions throws exception with bad array
ok 172 - setDescriptions accepts empty array ref
ok 173 - getDescriptions throws exception with argument
ok 174 - setDescriptions throws exception with no argument
ok 175 - setDescriptions throws exception with too many argument
ok 176 - setDescriptions accepts undef
ok 177 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 178 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 179 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 180 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 181 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 182 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 183 - setSecurity returns value
ok 184 - getSecurity fetches correct value
ok 185 - setSecurity throws exception with bad argument
ok 186 - getSecurity throws exception with argument
ok 187 - setSecurity throws exception with no argument
ok 188 - setSecurity throws exception with too many argument
ok 189 - setSecurity accepts undef
ok 190 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 191 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 192 - security->other() is a valid Bio::MAGE::Association::End
ok 193 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 194 - security->self() is a valid Bio::MAGE::Association::End
ok 195 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup'
ok 196 - An object of class 'Bio::MAGE::ArrayDesign::FeatureGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup'
ok
t/FeatureInformation.t ...........
1..57
ok 1 - use Bio::MAGE::DesignElement::FeatureInformation;
ok 2 - An object of class 'Bio::MAGE::DesignElement::FeatureInformation' isa 'Bio::MAGE::DesignElement::FeatureInformation'
ok 3 - package
ok 4 - class_name
ok 5 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::Feature'
ok 6 - setFeature returns value
ok 7 - getFeature fetches correct value
ok 8 - setFeature throws exception with bad argument
ok 9 - getFeature throws exception with argument
ok 10 - setFeature throws exception with no argument
ok 11 - setFeature throws exception with too many argument
ok 12 - setFeature accepts undef
ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 15 - feature->other() is a valid Bio::MAGE::Association::End
ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 17 - feature->self() is a valid Bio::MAGE::Association::End
ok 18 - propertySets set in new()
ok 19 - setPropertySets returns correct value
ok 20 - getPropertySets fetches correct value
ok 21 - addPropertySets returns number of items in list
ok 22 - addPropertySets adds correct value
ok 23 - setPropertySets throws exception with non-array argument
ok 24 - setPropertySets throws exception with bad argument array
ok 25 - addPropertySets throws exception with no arguments
ok 26 - addPropertySets throws exception with bad array
ok 27 - setPropertySets accepts empty array ref
ok 28 - getPropertySets throws exception with argument
ok 29 - setPropertySets throws exception with no argument
ok 30 - setPropertySets throws exception with too many argument
ok 31 - setPropertySets accepts undef
ok 32 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 33 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 34 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 35 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 36 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 37 - mismatchInformation set in new()
ok 38 - setMismatchInformation returns correct value
ok 39 - getMismatchInformation fetches correct value
ok 40 - addMismatchInformation returns number of items in list
ok 41 - addMismatchInformation adds correct value
ok 42 - setMismatchInformation throws exception with non-array argument
ok 43 - setMismatchInformation throws exception with bad argument array
ok 44 - addMismatchInformation throws exception with no arguments
ok 45 - addMismatchInformation throws exception with bad array
ok 46 - setMismatchInformation accepts empty array ref
ok 47 - getMismatchInformation throws exception with argument
ok 48 - setMismatchInformation throws exception with no argument
ok 49 - setMismatchInformation throws exception with too many argument
ok 50 - setMismatchInformation accepts undef
ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 53 - mismatchInformation->other() is a valid Bio::MAGE::Association::End
ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 55 - mismatchInformation->self() is a valid Bio::MAGE::Association::End
ok 56 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable'
ok 57 - An object of class 'Bio::MAGE::DesignElement::FeatureInformation' isa 'Bio::MAGE::Extendable'
ok
t/FeatureLocation.t ..............
1..37
ok 1 - use Bio::MAGE::DesignElement::FeatureLocation;
ok 2 - An object of class 'Bio::MAGE::DesignElement::FeatureLocation' isa 'Bio::MAGE::DesignElement::FeatureLocation'
ok 3 - package
ok 4 - class_name
ok 5 - row new
ok 6 - row getter/setter
ok 7 - row getter throws exception with argument
ok 8 - row setter throws exception with no argument
ok 9 - row setter throws exception with too many argument
ok 10 - row setter accepts undef
ok 11 - column new
ok 12 - column getter/setter
ok 13 - column getter throws exception with argument
ok 14 - column setter throws exception with no argument
ok 15 - column setter throws exception with too many argument
ok 16 - column setter accepts undef
ok 17 - propertySets set in new()
ok 18 - setPropertySets returns correct value
ok 19 - getPropertySets fetches correct value
ok 20 - addPropertySets returns number of items in list
ok 21 - addPropertySets adds correct value
ok 22 - setPropertySets throws exception with non-array argument
ok 23 - setPropertySets throws exception with bad argument array
ok 24 - addPropertySets throws exception with no arguments
ok 25 - addPropertySets throws exception with bad array
ok 26 - setPropertySets accepts empty array ref
ok 27 - getPropertySets throws exception with argument
ok 28 - setPropertySets throws exception with no argument
ok 29 - setPropertySets throws exception with too many argument
ok 30 - setPropertySets accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 36 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable'
ok 37 - An object of class 'Bio::MAGE::DesignElement::FeatureLocation' isa 'Bio::MAGE::Extendable'
ok
t/FeatureReporterMap.t ...........
1..139
ok 1 - use Bio::MAGE::DesignElement::FeatureReporterMap;
ok 2 - An object of class 'Bio::MAGE::DesignElement::FeatureReporterMap' isa 'Bio::MAGE::DesignElement::FeatureReporterMap'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - protocolApplications set in new()
ok 18 - setProtocolApplications returns correct value
ok 19 - getProtocolApplications fetches correct value
ok 20 - addProtocolApplications returns number of items in list
ok 21 - addProtocolApplications adds correct value
ok 22 - setProtocolApplications throws exception with non-array argument
ok 23 - setProtocolApplications throws exception with bad argument array
ok 24 - addProtocolApplications throws exception with no arguments
ok 25 - addProtocolApplications throws exception with bad array
ok 26 - setProtocolApplications accepts empty array ref
ok 27 - getProtocolApplications throws exception with argument
ok 28 - setProtocolApplications throws exception with no argument
ok 29 - setProtocolApplications throws exception with too many argument
ok 30 - setProtocolApplications accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End
ok 36 - descriptions set in new()
ok 37 - setDescriptions returns correct value
ok 38 - getDescriptions fetches correct value
ok 39 - addDescriptions returns number of items in list
ok 40 - addDescriptions adds correct value
ok 41 - setDescriptions throws exception with non-array argument
ok 42 - setDescriptions throws exception with bad argument array
ok 43 - addDescriptions throws exception with no arguments
ok 44 - addDescriptions throws exception with bad array
ok 45 - setDescriptions accepts empty array ref
ok 46 - getDescriptions throws exception with argument
ok 47 - setDescriptions throws exception with no argument
ok 48 - setDescriptions throws exception with too many argument
ok 49 - setDescriptions accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 55 - auditTrail set in new()
ok 56 - setAuditTrail returns correct value
ok 57 - getAuditTrail fetches correct value
ok 58 - addAuditTrail returns number of items in list
ok 59 - addAuditTrail adds correct value
ok 60 - setAuditTrail throws exception with non-array argument
ok 61 - setAuditTrail throws exception with bad argument array
ok 62 - addAuditTrail throws exception with no arguments
ok 63 - addAuditTrail throws exception with bad array
ok 64 - setAuditTrail accepts empty array ref
ok 65 - getAuditTrail throws exception with argument
ok 66 - setAuditTrail throws exception with no argument
ok 67 - setAuditTrail throws exception with too many argument
ok 68 - setAuditTrail accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 75 - setSecurity returns value
ok 76 - getSecurity fetches correct value
ok 77 - setSecurity throws exception with bad argument
ok 78 - getSecurity throws exception with argument
ok 79 - setSecurity throws exception with no argument
ok 80 - setSecurity throws exception with too many argument
ok 81 - setSecurity accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - security->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - security->self() is a valid Bio::MAGE::Association::End
ok 87 - propertySets set in new()
ok 88 - setPropertySets returns correct value
ok 89 - getPropertySets fetches correct value
ok 90 - addPropertySets returns number of items in list
ok 91 - addPropertySets adds correct value
ok 92 - setPropertySets throws exception with non-array argument
ok 93 - setPropertySets throws exception with bad argument array
ok 94 - addPropertySets throws exception with no arguments
ok 95 - addPropertySets throws exception with bad array
ok 96 - setPropertySets accepts empty array ref
ok 97 - getPropertySets throws exception with argument
ok 98 - setPropertySets throws exception with no argument
ok 99 - setPropertySets throws exception with too many argument
ok 100 - setPropertySets accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 106 - An object of class 'Bio::MAGE::DesignElement::Reporter' isa 'Bio::MAGE::DesignElement::Reporter'
ok 107 - setReporter returns value
ok 108 - getReporter fetches correct value
ok 109 - setReporter throws exception with bad argument
ok 110 - getReporter throws exception with argument
ok 111 - setReporter throws exception with no argument
ok 112 - setReporter throws exception with too many argument
ok 113 - setReporter accepts undef
ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 116 - reporter->other() is a valid Bio::MAGE::Association::End
ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 118 - reporter->self() is a valid Bio::MAGE::Association::End
ok 119 - featureInformationSources set in new()
ok 120 - setFeatureInformationSources returns correct value
ok 121 - getFeatureInformationSources fetches correct value
ok 122 - addFeatureInformationSources returns number of items in list
ok 123 - addFeatureInformationSources adds correct value
ok 124 - setFeatureInformationSources throws exception with non-array argument
ok 125 - setFeatureInformationSources throws exception with bad argument array
ok 126 - addFeatureInformationSources throws exception with no arguments
ok 127 - addFeatureInformationSources throws exception with bad array
ok 128 - setFeatureInformationSources accepts empty array ref
ok 129 - getFeatureInformationSources throws exception with argument
ok 130 - setFeatureInformationSources throws exception with no argument
ok 131 - setFeatureInformationSources throws exception with too many argument
ok 132 - setFeatureInformationSources accepts undef
ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 135 - featureInformationSources->other() is a valid Bio::MAGE::Association::End
ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 137 - featureInformationSources->self() is a valid Bio::MAGE::Association::End
ok 138 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap'
ok 139 - An object of class 'Bio::MAGE::DesignElement::FeatureReporterMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap'
ok
t/Fiducial.t .....................
1..115
ok 1 - use Bio::MAGE::Array::Fiducial;
ok 2 - An object of class 'Bio::MAGE::Array::Fiducial' isa 'Bio::MAGE::Array::Fiducial'
ok 3 - package
ok 4 - class_name
ok 5 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit'
ok 6 - setDistanceUnit returns value
ok 7 - getDistanceUnit fetches correct value
ok 8 - setDistanceUnit throws exception with bad argument
ok 9 - getDistanceUnit throws exception with argument
ok 10 - setDistanceUnit throws exception with no argument
ok 11 - setDistanceUnit throws exception with too many argument
ok 12 - setDistanceUnit accepts undef
ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 15 - distanceUnit->other() is a valid Bio::MAGE::Association::End
ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 17 - distanceUnit->self() is a valid Bio::MAGE::Association::End
ok 18 - descriptions set in new()
ok 19 - setDescriptions returns correct value
ok 20 - getDescriptions fetches correct value
ok 21 - addDescriptions returns number of items in list
ok 22 - addDescriptions adds correct value
ok 23 - setDescriptions throws exception with non-array argument
ok 24 - setDescriptions throws exception with bad argument array
ok 25 - addDescriptions throws exception with no arguments
ok 26 - addDescriptions throws exception with bad array
ok 27 - setDescriptions accepts empty array ref
ok 28 - getDescriptions throws exception with argument
ok 29 - setDescriptions throws exception with no argument
ok 30 - setDescriptions throws exception with too many argument
ok 31 - setDescriptions accepts undef
ok 32 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 33 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 34 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 35 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 36 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 37 - An object of class 'Bio::MAGE::DesignElement::Position' isa 'Bio::MAGE::DesignElement::Position'
ok 38 - setPosition returns value
ok 39 - getPosition fetches correct value
ok 40 - setPosition throws exception with bad argument
ok 41 - getPosition throws exception with argument
ok 42 - setPosition throws exception with no argument
ok 43 - setPosition throws exception with too many argument
ok 44 - setPosition accepts undef
ok 45 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 47 - position->other() is a valid Bio::MAGE::Association::End
ok 48 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 49 - position->self() is a valid Bio::MAGE::Association::End
ok 50 - auditTrail set in new()
ok 51 - setAuditTrail returns correct value
ok 52 - getAuditTrail fetches correct value
ok 53 - addAuditTrail returns number of items in list
ok 54 - addAuditTrail adds correct value
ok 55 - setAuditTrail throws exception with non-array argument
ok 56 - setAuditTrail throws exception with bad argument array
ok 57 - addAuditTrail throws exception with no arguments
ok 58 - addAuditTrail throws exception with bad array
ok 59 - setAuditTrail accepts empty array ref
ok 60 - getAuditTrail throws exception with argument
ok 61 - setAuditTrail throws exception with no argument
ok 62 - setAuditTrail throws exception with too many argument
ok 63 - setAuditTrail accepts undef
ok 64 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 66 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 67 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 68 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 69 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 70 - setSecurity returns value
ok 71 - getSecurity fetches correct value
ok 72 - setSecurity throws exception with bad argument
ok 73 - getSecurity throws exception with argument
ok 74 - setSecurity throws exception with no argument
ok 75 - setSecurity throws exception with too many argument
ok 76 - setSecurity accepts undef
ok 77 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 79 - security->other() is a valid Bio::MAGE::Association::End
ok 80 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 81 - security->self() is a valid Bio::MAGE::Association::End
ok 82 - propertySets set in new()
ok 83 - setPropertySets returns correct value
ok 84 - getPropertySets fetches correct value
ok 85 - addPropertySets returns number of items in list
ok 86 - addPropertySets adds correct value
ok 87 - setPropertySets throws exception with non-array argument
ok 88 - setPropertySets throws exception with bad argument array
ok 89 - addPropertySets throws exception with no arguments
ok 90 - addPropertySets throws exception with bad array
ok 91 - setPropertySets accepts empty array ref
ok 92 - getPropertySets throws exception with argument
ok 93 - setPropertySets throws exception with no argument
ok 94 - setPropertySets throws exception with too many argument
ok 95 - setPropertySets accepts undef
ok 96 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 98 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 99 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 100 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 101 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 102 - setFiducialType returns value
ok 103 - getFiducialType fetches correct value
ok 104 - setFiducialType throws exception with bad argument
ok 105 - getFiducialType throws exception with argument
ok 106 - setFiducialType throws exception with no argument
ok 107 - setFiducialType throws exception with too many argument
ok 108 - setFiducialType accepts undef
ok 109 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 111 - fiducialType->other() is a valid Bio::MAGE::Association::End
ok 112 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 113 - fiducialType->self() is a valid Bio::MAGE::Association::End
ok 114 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable'
ok 115 - An object of class 'Bio::MAGE::Array::Fiducial' isa 'Bio::MAGE::Describable'
ok
t/Hardware.t .....................
1..176
ok 1 - use Bio::MAGE::Protocol::Hardware;
ok 2 - An object of class 'Bio::MAGE::Protocol::Hardware' isa 'Bio::MAGE::Protocol::Hardware'
ok 3 - package
ok 4 - class_name
ok 5 - make new
ok 6 - make getter/setter
ok 7 - make getter throws exception with argument
ok 8 - make setter throws exception with no argument
ok 9 - make setter throws exception with too many argument
ok 10 - make setter accepts undef
ok 11 - identifier new
ok 12 - identifier getter/setter
ok 13 - identifier getter throws exception with argument
ok 14 - identifier setter throws exception with no argument
ok 15 - identifier setter throws exception with too many argument
ok 16 - identifier setter accepts undef
ok 17 - URI new
ok 18 - URI getter/setter
ok 19 - URI getter throws exception with argument
ok 20 - URI setter throws exception with no argument
ok 21 - URI setter throws exception with too many argument
ok 22 - URI setter accepts undef
ok 23 - model new
ok 24 - model getter/setter
ok 25 - model getter throws exception with argument
ok 26 - model setter throws exception with no argument
ok 27 - model setter throws exception with too many argument
ok 28 - model setter accepts undef
ok 29 - name new
ok 30 - name getter/setter
ok 31 - name getter throws exception with argument
ok 32 - name setter throws exception with no argument
ok 33 - name setter throws exception with too many argument
ok 34 - name setter accepts undef
ok 35 - parameterTypes set in new()
ok 36 - setParameterTypes returns correct value
ok 37 - getParameterTypes fetches correct value
ok 38 - addParameterTypes returns number of items in list
ok 39 - addParameterTypes adds correct value
ok 40 - setParameterTypes throws exception with non-array argument
ok 41 - setParameterTypes throws exception with bad argument array
ok 42 - addParameterTypes throws exception with no arguments
ok 43 - addParameterTypes throws exception with bad array
ok 44 - setParameterTypes accepts empty array ref
ok 45 - getParameterTypes throws exception with argument
ok 46 - setParameterTypes throws exception with no argument
ok 47 - setParameterTypes throws exception with too many argument
ok 48 - setParameterTypes accepts undef
ok 49 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 50 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 51 - parameterTypes->other() is a valid Bio::MAGE::Association::End
ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 53 - parameterTypes->self() is a valid Bio::MAGE::Association::End
ok 54 - auditTrail set in new()
ok 55 - setAuditTrail returns correct value
ok 56 - getAuditTrail fetches correct value
ok 57 - addAuditTrail returns number of items in list
ok 58 - addAuditTrail adds correct value
ok 59 - setAuditTrail throws exception with non-array argument
ok 60 - setAuditTrail throws exception with bad argument array
ok 61 - addAuditTrail throws exception with no arguments
ok 62 - addAuditTrail throws exception with bad array
ok 63 - setAuditTrail accepts empty array ref
ok 64 - getAuditTrail throws exception with argument
ok 65 - setAuditTrail throws exception with no argument
ok 66 - setAuditTrail throws exception with too many argument
ok 67 - setAuditTrail accepts undef
ok 68 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 69 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 70 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 72 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 73 - propertySets set in new()
ok 74 - setPropertySets returns correct value
ok 75 - getPropertySets fetches correct value
ok 76 - addPropertySets returns number of items in list
ok 77 - addPropertySets adds correct value
ok 78 - setPropertySets throws exception with non-array argument
ok 79 - setPropertySets throws exception with bad argument array
ok 80 - addPropertySets throws exception with no arguments
ok 81 - addPropertySets throws exception with bad array
ok 82 - setPropertySets accepts empty array ref
ok 83 - getPropertySets throws exception with argument
ok 84 - setPropertySets throws exception with no argument
ok 85 - setPropertySets throws exception with too many argument
ok 86 - setPropertySets accepts undef
ok 87 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 88 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 89 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 90 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 91 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 92 - hardwareManufacturers set in new()
ok 93 - setHardwareManufacturers returns correct value
ok 94 - getHardwareManufacturers fetches correct value
ok 95 - addHardwareManufacturers returns number of items in list
ok 96 - addHardwareManufacturers adds correct value
ok 97 - setHardwareManufacturers throws exception with non-array argument
ok 98 - setHardwareManufacturers throws exception with bad argument array
ok 99 - addHardwareManufacturers throws exception with no arguments
ok 100 - addHardwareManufacturers throws exception with bad array
ok 101 - setHardwareManufacturers accepts empty array ref
ok 102 - getHardwareManufacturers throws exception with argument
ok 103 - setHardwareManufacturers throws exception with no argument
ok 104 - setHardwareManufacturers throws exception with too many argument
ok 105 - setHardwareManufacturers accepts undef
ok 106 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 107 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 108 - hardwareManufacturers->other() is a valid Bio::MAGE::Association::End
ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 110 - hardwareManufacturers->self() is a valid Bio::MAGE::Association::End
ok 111 - descriptions set in new()
ok 112 - setDescriptions returns correct value
ok 113 - getDescriptions fetches correct value
ok 114 - addDescriptions returns number of items in list
ok 115 - addDescriptions adds correct value
ok 116 - setDescriptions throws exception with non-array argument
ok 117 - setDescriptions throws exception with bad argument array
ok 118 - addDescriptions throws exception with no arguments
ok 119 - addDescriptions throws exception with bad array
ok 120 - setDescriptions accepts empty array ref
ok 121 - getDescriptions throws exception with argument
ok 122 - setDescriptions throws exception with no argument
ok 123 - setDescriptions throws exception with too many argument
ok 124 - setDescriptions accepts undef
ok 125 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 126 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 127 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 129 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 130 - softwares set in new()
ok 131 - setSoftwares returns correct value
ok 132 - getSoftwares fetches correct value
ok 133 - addSoftwares returns number of items in list
ok 134 - addSoftwares adds correct value
ok 135 - setSoftwares throws exception with non-array argument
ok 136 - setSoftwares throws exception with bad argument array
ok 137 - addSoftwares throws exception with no arguments
ok 138 - addSoftwares throws exception with bad array
ok 139 - setSoftwares accepts empty array ref
ok 140 - getSoftwares throws exception with argument
ok 141 - setSoftwares throws exception with no argument
ok 142 - setSoftwares throws exception with too many argument
ok 143 - setSoftwares accepts undef
ok 144 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 145 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 146 - softwares->other() is a valid Bio::MAGE::Association::End
ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 148 - softwares->self() is a valid Bio::MAGE::Association::End
ok 149 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 150 - setSecurity returns value
ok 151 - getSecurity fetches correct value
ok 152 - setSecurity throws exception with bad argument
ok 153 - getSecurity throws exception with argument
ok 154 - setSecurity throws exception with no argument
ok 155 - setSecurity throws exception with too many argument
ok 156 - setSecurity accepts undef
ok 157 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 158 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 159 - security->other() is a valid Bio::MAGE::Association::End
ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 161 - security->self() is a valid Bio::MAGE::Association::End
ok 162 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 163 - setType returns value
ok 164 - getType fetches correct value
ok 165 - setType throws exception with bad argument
ok 166 - getType throws exception with argument
ok 167 - setType throws exception with no argument
ok 168 - setType throws exception with too many argument
ok 169 - setType accepts undef
ok 170 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 171 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 172 - type->other() is a valid Bio::MAGE::Association::End
ok 173 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 174 - type->self() is a valid Bio::MAGE::Association::End
ok 175 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Protocol::Parameterizable'
ok 176 - An object of class 'Bio::MAGE::Protocol::Hardware' isa 'Bio::MAGE::Protocol::Parameterizable'
ok
t/HardwareApplication.t ..........
1..114
ok 1 - use Bio::MAGE::Protocol::HardwareApplication;
ok 2 - An object of class 'Bio::MAGE::Protocol::HardwareApplication' isa 'Bio::MAGE::Protocol::HardwareApplication'
ok 3 - package
ok 4 - class_name
ok 5 - serialNumber new
ok 6 - serialNumber getter/setter
ok 7 - serialNumber getter throws exception with argument
ok 8 - serialNumber setter throws exception with no argument
ok 9 - serialNumber setter throws exception with too many argument
ok 10 - serialNumber setter accepts undef
ok 11 - An object of class 'Bio::MAGE::Protocol::Hardware' isa 'Bio::MAGE::Protocol::Hardware'
ok 12 - setHardware returns value
ok 13 - getHardware fetches correct value
ok 14 - setHardware throws exception with bad argument
ok 15 - getHardware throws exception with argument
ok 16 - setHardware throws exception with no argument
ok 17 - setHardware throws exception with too many argument
ok 18 - setHardware accepts undef
ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 21 - hardware->other() is a valid Bio::MAGE::Association::End
ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 23 - hardware->self() is a valid Bio::MAGE::Association::End
ok 24 - descriptions set in new()
ok 25 - setDescriptions returns correct value
ok 26 - getDescriptions fetches correct value
ok 27 - addDescriptions returns number of items in list
ok 28 - addDescriptions adds correct value
ok 29 - setDescriptions throws exception with non-array argument
ok 30 - setDescriptions throws exception with bad argument array
ok 31 - addDescriptions throws exception with no arguments
ok 32 - addDescriptions throws exception with bad array
ok 33 - setDescriptions accepts empty array ref
ok 34 - getDescriptions throws exception with argument
ok 35 - setDescriptions throws exception with no argument
ok 36 - setDescriptions throws exception with too many argument
ok 37 - setDescriptions accepts undef
ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 40 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 42 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 43 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 44 - setSecurity returns value
ok 45 - getSecurity fetches correct value
ok 46 - setSecurity throws exception with bad argument
ok 47 - getSecurity throws exception with argument
ok 48 - setSecurity throws exception with no argument
ok 49 - setSecurity throws exception with too many argument
ok 50 - setSecurity accepts undef
ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 53 - security->other() is a valid Bio::MAGE::Association::End
ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 55 - security->self() is a valid Bio::MAGE::Association::End
ok 56 - auditTrail set in new()
ok 57 - setAuditTrail returns correct value
ok 58 - getAuditTrail fetches correct value
ok 59 - addAuditTrail returns number of items in list
ok 60 - addAuditTrail adds correct value
ok 61 - setAuditTrail throws exception with non-array argument
ok 62 - setAuditTrail throws exception with bad argument array
ok 63 - addAuditTrail throws exception with no arguments
ok 64 - addAuditTrail throws exception with bad array
ok 65 - setAuditTrail accepts empty array ref
ok 66 - getAuditTrail throws exception with argument
ok 67 - setAuditTrail throws exception with no argument
ok 68 - setAuditTrail throws exception with too many argument
ok 69 - setAuditTrail accepts undef
ok 70 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 72 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 73 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 74 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 75 - propertySets set in new()
ok 76 - setPropertySets returns correct value
ok 77 - getPropertySets fetches correct value
ok 78 - addPropertySets returns number of items in list
ok 79 - addPropertySets adds correct value
ok 80 - setPropertySets throws exception with non-array argument
ok 81 - setPropertySets throws exception with bad argument array
ok 82 - addPropertySets throws exception with no arguments
ok 83 - addPropertySets throws exception with bad array
ok 84 - setPropertySets accepts empty array ref
ok 85 - getPropertySets throws exception with argument
ok 86 - setPropertySets throws exception with no argument
ok 87 - setPropertySets throws exception with too many argument
ok 88 - setPropertySets accepts undef
ok 89 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 90 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 91 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 92 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 93 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 94 - parameterValues set in new()
ok 95 - setParameterValues returns correct value
ok 96 - getParameterValues fetches correct value
ok 97 - addParameterValues returns number of items in list
ok 98 - addParameterValues adds correct value
ok 99 - setParameterValues throws exception with non-array argument
ok 100 - setParameterValues throws exception with bad argument array
ok 101 - addParameterValues throws exception with no arguments
ok 102 - addParameterValues throws exception with bad array
ok 103 - setParameterValues accepts empty array ref
ok 104 - getParameterValues throws exception with argument
ok 105 - setParameterValues throws exception with no argument
ok 106 - setParameterValues throws exception with too many argument
ok 107 - setParameterValues accepts undef
ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 110 - parameterValues->other() is a valid Bio::MAGE::Association::End
ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 112 - parameterValues->self() is a valid Bio::MAGE::Association::End
ok 113 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication'
ok 114 - An object of class 'Bio::MAGE::Protocol::HardwareApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication'
ok
t/HigherLevelAnalysis_package.t ..
1..15
ok 1 - use Bio::MAGE::HigherLevelAnalysis;
ok 2 - number of subclasses
ok 3 - An object of class 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster' isa 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster'
ok 4 - An object of class 'Bio::MAGE::HigherLevelAnalysis::Node' isa 'Bio::MAGE::HigherLevelAnalysis::Node'
ok 5 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeContents' isa 'Bio::MAGE::HigherLevelAnalysis::NodeContents'
ok 6 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeValue' isa 'Bio::MAGE::HigherLevelAnalysis::NodeValue'
ok 7 - An object of class 'Bio::MAGE::HigherLevelAnalysis' isa 'Bio::MAGE::HigherLevelAnalysis'
ok 8 - tagname
ok 9 - xml_lists
ok 10 - A reference of type 'ARRAY' isa 'ARRAY'
ok 11 - bioassaydatacluster_list empty
ok 12 - A reference of type 'ARRAY' isa 'ARRAY'
ok 13 - getBioAssayDataCluster_list empty
ok 14 - A reference of type 'ARRAY' isa 'ARRAY'
ok 15 - getBioAssayDataCluster_list not empty
ok
t/Hybridization.t ................
1..152
ok 1 - use Bio::MAGE::BioAssay::Hybridization;
ok 2 - An object of class 'Bio::MAGE::BioAssay::Hybridization' isa 'Bio::MAGE::BioAssay::Hybridization'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - sourceBioMaterialMeasurements set in new()
ok 18 - setSourceBioMaterialMeasurements returns correct value
ok 19 - getSourceBioMaterialMeasurements fetches correct value
ok 20 - addSourceBioMaterialMeasurements returns number of items in list
ok 21 - addSourceBioMaterialMeasurements adds correct value
ok 22 - setSourceBioMaterialMeasurements throws exception with non-array argument
ok 23 - setSourceBioMaterialMeasurements throws exception with bad argument array
ok 24 - addSourceBioMaterialMeasurements throws exception with no arguments
ok 25 - addSourceBioMaterialMeasurements throws exception with bad array
ok 26 - setSourceBioMaterialMeasurements accepts empty array ref
ok 27 - getSourceBioMaterialMeasurements throws exception with argument
ok 28 - setSourceBioMaterialMeasurements throws exception with no argument
ok 29 - setSourceBioMaterialMeasurements throws exception with too many argument
ok 30 - setSourceBioMaterialMeasurements accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - sourceBioMaterialMeasurements->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - sourceBioMaterialMeasurements->self() is a valid Bio::MAGE::Association::End
ok 36 - auditTrail set in new()
ok 37 - setAuditTrail returns correct value
ok 38 - getAuditTrail fetches correct value
ok 39 - addAuditTrail returns number of items in list
ok 40 - addAuditTrail adds correct value
ok 41 - setAuditTrail throws exception with non-array argument
ok 42 - setAuditTrail throws exception with bad argument array
ok 43 - addAuditTrail throws exception with no arguments
ok 44 - addAuditTrail throws exception with bad array
ok 45 - setAuditTrail accepts empty array ref
ok 46 - getAuditTrail throws exception with argument
ok 47 - setAuditTrail throws exception with no argument
ok 48 - setAuditTrail throws exception with too many argument
ok 49 - setAuditTrail accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 55 - propertySets set in new()
ok 56 - setPropertySets returns correct value
ok 57 - getPropertySets fetches correct value
ok 58 - addPropertySets returns number of items in list
ok 59 - addPropertySets adds correct value
ok 60 - setPropertySets throws exception with non-array argument
ok 61 - setPropertySets throws exception with bad argument array
ok 62 - addPropertySets throws exception with no arguments
ok 63 - addPropertySets throws exception with bad array
ok 64 - setPropertySets accepts empty array ref
ok 65 - getPropertySets throws exception with argument
ok 66 - setPropertySets throws exception with no argument
ok 67 - setPropertySets throws exception with too many argument
ok 68 - setPropertySets accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 74 - protocolApplications set in new()
ok 75 - setProtocolApplications returns correct value
ok 76 - getProtocolApplications fetches correct value
ok 77 - addProtocolApplications returns number of items in list
ok 78 - addProtocolApplications adds correct value
ok 79 - setProtocolApplications throws exception with non-array argument
ok 80 - setProtocolApplications throws exception with bad argument array
ok 81 - addProtocolApplications throws exception with no arguments
ok 82 - addProtocolApplications throws exception with bad array
ok 83 - setProtocolApplications accepts empty array ref
ok 84 - getProtocolApplications throws exception with argument
ok 85 - setProtocolApplications throws exception with no argument
ok 86 - setProtocolApplications throws exception with too many argument
ok 87 - setProtocolApplications accepts undef
ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 90 - protocolApplications->other() is a valid Bio::MAGE::Association::End
ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 92 - protocolApplications->self() is a valid Bio::MAGE::Association::End
ok 93 - An object of class 'Bio::MAGE::Array::Array' isa 'Bio::MAGE::Array::Array'
ok 94 - setArray returns value
ok 95 - getArray fetches correct value
ok 96 - setArray throws exception with bad argument
ok 97 - getArray throws exception with argument
ok 98 - setArray throws exception with no argument
ok 99 - setArray throws exception with too many argument
ok 100 - setArray accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - array->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - array->self() is a valid Bio::MAGE::Association::End
ok 106 - descriptions set in new()
ok 107 - setDescriptions returns correct value
ok 108 - getDescriptions fetches correct value
ok 109 - addDescriptions returns number of items in list
ok 110 - addDescriptions adds correct value
ok 111 - setDescriptions throws exception with non-array argument
ok 112 - setDescriptions throws exception with bad argument array
ok 113 - addDescriptions throws exception with no arguments
ok 114 - addDescriptions throws exception with bad array
ok 115 - setDescriptions accepts empty array ref
ok 116 - getDescriptions throws exception with argument
ok 117 - setDescriptions throws exception with no argument
ok 118 - setDescriptions throws exception with too many argument
ok 119 - setDescriptions accepts undef
ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 122 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 124 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 125 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 126 - setSecurity returns value
ok 127 - getSecurity fetches correct value
ok 128 - setSecurity throws exception with bad argument
ok 129 - getSecurity throws exception with argument
ok 130 - setSecurity throws exception with no argument
ok 131 - setSecurity throws exception with too many argument
ok 132 - setSecurity accepts undef
ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 135 - security->other() is a valid Bio::MAGE::Association::End
ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 137 - security->self() is a valid Bio::MAGE::Association::End
ok 138 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay'
ok 139 - setPhysicalBioAssayTarget returns value
ok 140 - getPhysicalBioAssayTarget fetches correct value
ok 141 - setPhysicalBioAssayTarget throws exception with bad argument
ok 142 - getPhysicalBioAssayTarget throws exception with argument
ok 143 - setPhysicalBioAssayTarget throws exception with no argument
ok 144 - setPhysicalBioAssayTarget throws exception with too many argument
ok 145 - setPhysicalBioAssayTarget accepts undef
ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 148 - physicalBioAssayTarget->other() is a valid Bio::MAGE::Association::End
ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 150 - physicalBioAssayTarget->self() is a valid Bio::MAGE::Association::End
ok 151 - An object of class 'Bio::MAGE::BioAssay::BioAssayCreation' isa 'Bio::MAGE::BioAssay::BioAssayCreation'
ok 152 - An object of class 'Bio::MAGE::BioAssay::Hybridization' isa 'Bio::MAGE::BioAssay::BioAssayCreation'
ok
t/Identifiable.t .................
1..146
ok 1 - use Bio::MAGE::Identifiable;
ok 2 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - descriptions set in new()
ok 18 - setDescriptions returns correct value
ok 19 - getDescriptions fetches correct value
ok 20 - addDescriptions returns number of items in list
ok 21 - addDescriptions adds correct value
ok 22 - setDescriptions throws exception with non-array argument
ok 23 - setDescriptions throws exception with bad argument array
ok 24 - addDescriptions throws exception with no arguments
ok 25 - addDescriptions throws exception with bad array
ok 26 - setDescriptions accepts empty array ref
ok 27 - getDescriptions throws exception with argument
ok 28 - setDescriptions throws exception with no argument
ok 29 - setDescriptions throws exception with too many argument
ok 30 - setDescriptions accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 36 - auditTrail set in new()
ok 37 - setAuditTrail returns correct value
ok 38 - getAuditTrail fetches correct value
ok 39 - addAuditTrail returns number of items in list
ok 40 - addAuditTrail adds correct value
ok 41 - setAuditTrail throws exception with non-array argument
ok 42 - setAuditTrail throws exception with bad argument array
ok 43 - addAuditTrail throws exception with no arguments
ok 44 - addAuditTrail throws exception with bad array
ok 45 - setAuditTrail accepts empty array ref
ok 46 - getAuditTrail throws exception with argument
ok 47 - setAuditTrail throws exception with no argument
ok 48 - setAuditTrail throws exception with too many argument
ok 49 - setAuditTrail accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 56 - setSecurity returns value
ok 57 - getSecurity fetches correct value
ok 58 - setSecurity throws exception with bad argument
ok 59 - getSecurity throws exception with argument
ok 60 - setSecurity throws exception with no argument
ok 61 - setSecurity throws exception with too many argument
ok 62 - setSecurity accepts undef
ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 65 - security->other() is a valid Bio::MAGE::Association::End
ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 67 - security->self() is a valid Bio::MAGE::Association::End
ok 68 - propertySets set in new()
ok 69 - setPropertySets returns correct value
ok 70 - getPropertySets fetches correct value
ok 71 - addPropertySets returns number of items in list
ok 72 - addPropertySets adds correct value
ok 73 - setPropertySets throws exception with non-array argument
ok 74 - setPropertySets throws exception with bad argument array
ok 75 - addPropertySets throws exception with no arguments
ok 76 - addPropertySets throws exception with bad array
ok 77 - setPropertySets accepts empty array ref
ok 78 - getPropertySets throws exception with argument
ok 79 - setPropertySets throws exception with no argument
ok 80 - setPropertySets throws exception with too many argument
ok 81 - setPropertySets accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 87 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType'
ok 88 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::Identifiable'
ok 89 - An object of class 'Bio::MAGE::ArrayDesign::ArrayDesign' isa 'Bio::MAGE::ArrayDesign::ArrayDesign'
ok 90 - An object of class 'Bio::MAGE::ArrayDesign::ArrayDesign' isa 'Bio::MAGE::Identifiable'
ok 91 - An object of class 'Bio::MAGE::Description::Database' isa 'Bio::MAGE::Description::Database'
ok 92 - An object of class 'Bio::MAGE::Description::Database' isa 'Bio::MAGE::Identifiable'
ok 93 - An object of class 'Bio::MAGE::BioAssay::Image' isa 'Bio::MAGE::BioAssay::Image'
ok 94 - An object of class 'Bio::MAGE::BioAssay::Image' isa 'Bio::MAGE::Identifiable'
ok 95 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::BioAssay::BioAssay'
ok 96 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::Identifiable'
ok 97 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel'
ok 98 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::Identifiable'
ok 99 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 100 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::Identifiable'
ok 101 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::DesignElement::DesignElement'
ok 102 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::Identifiable'
ok 103 - An object of class 'Bio::MAGE::ArrayDesign::Zone' isa 'Bio::MAGE::ArrayDesign::Zone'
ok 104 - An object of class 'Bio::MAGE::ArrayDesign::Zone' isa 'Bio::MAGE::Identifiable'
ok 105 - An object of class 'Bio::MAGE::AuditAndSecurity::SecurityGroup' isa 'Bio::MAGE::AuditAndSecurity::SecurityGroup'
ok 106 - An object of class 'Bio::MAGE::AuditAndSecurity::SecurityGroup' isa 'Bio::MAGE::Identifiable'
ok 107 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::AuditAndSecurity::Contact'
ok 108 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::Identifiable'
ok 109 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup'
ok 110 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::Identifiable'
ok 111 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData'
ok 112 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::Identifiable'
ok 113 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::BioAssayData::QuantitationTypeDimension'
ok 114 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::Identifiable'
ok 115 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension'
ok 116 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::Identifiable'
ok 117 - An object of class 'Bio::MAGE::Array::Array' isa 'Bio::MAGE::Array::Array'
ok 118 - An object of class 'Bio::MAGE::Array::Array' isa 'Bio::MAGE::Identifiable'
ok 119 - An object of class 'Bio::MAGE::Array::ArrayGroup' isa 'Bio::MAGE::Array::ArrayGroup'
ok 120 - An object of class 'Bio::MAGE::Array::ArrayGroup' isa 'Bio::MAGE::Identifiable'
ok 121 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::BioAssayData::BioAssayDimension'
ok 122 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::Identifiable'
ok 123 - An object of class 'Bio::MAGE::Array::ArrayManufacture' isa 'Bio::MAGE::Array::ArrayManufacture'
ok 124 - An object of class 'Bio::MAGE::Array::ArrayManufacture' isa 'Bio::MAGE::Identifiable'
ok 125 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent'
ok 126 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::Identifiable'
ok 127 - An object of class 'Bio::MAGE::Experiment::Experiment' isa 'Bio::MAGE::Experiment::Experiment'
ok 128 - An object of class 'Bio::MAGE::Experiment::Experiment' isa 'Bio::MAGE::Identifiable'
ok 129 - An object of class 'Bio::MAGE::Experiment::ExperimentalFactor' isa 'Bio::MAGE::Experiment::ExperimentalFactor'
ok 130 - An object of class 'Bio::MAGE::Experiment::ExperimentalFactor' isa 'Bio::MAGE::Identifiable'
ok 131 - An object of class 'Bio::MAGE::Experiment::FactorValue' isa 'Bio::MAGE::Experiment::FactorValue'
ok 132 - An object of class 'Bio::MAGE::Experiment::FactorValue' isa 'Bio::MAGE::Identifiable'
ok 133 - An object of class 'Bio::MAGE::Protocol::Parameter' isa 'Bio::MAGE::Protocol::Parameter'
ok 134 - An object of class 'Bio::MAGE::Protocol::Parameter' isa 'Bio::MAGE::Identifiable'
ok 135 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial'
ok 136 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::Identifiable'
ok 137 - An object of class 'Bio::MAGE::BioMaterial::Compound' isa 'Bio::MAGE::BioMaterial::Compound'
ok 138 - An object of class 'Bio::MAGE::BioMaterial::Compound' isa 'Bio::MAGE::Identifiable'
ok 139 - An object of class 'Bio::MAGE::BioSequence::BioSequence' isa 'Bio::MAGE::BioSequence::BioSequence'
ok 140 - An object of class 'Bio::MAGE::BioSequence::BioSequence' isa 'Bio::MAGE::Identifiable'
ok 141 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Protocol::Parameterizable'
ok 142 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Identifiable'
ok 143 - An object of class 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster' isa 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster'
ok 144 - An object of class 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster' isa 'Bio::MAGE::Identifiable'
ok 145 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable'
ok 146 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Describable'
ok
t/Image.t ........................
1..126
ok 1 - use Bio::MAGE::BioAssay::Image;
ok 2 - An object of class 'Bio::MAGE::BioAssay::Image' isa 'Bio::MAGE::BioAssay::Image'
ok 3 - package
ok 4 - class_name
ok 5 - URI new
ok 6 - URI getter/setter
ok 7 - URI getter throws exception with argument
ok 8 - URI setter throws exception with no argument
ok 9 - URI setter throws exception with too many argument
ok 10 - URI setter accepts undef
ok 11 - identifier new
ok 12 - identifier getter/setter
ok 13 - identifier getter throws exception with argument
ok 14 - identifier setter throws exception with no argument
ok 15 - identifier setter throws exception with too many argument
ok 16 - identifier setter accepts undef
ok 17 - name new
ok 18 - name getter/setter
ok 19 - name getter throws exception with argument
ok 20 - name setter throws exception with no argument
ok 21 - name setter throws exception with too many argument
ok 22 - name setter accepts undef
ok 23 - channels set in new()
ok 24 - setChannels returns correct value
ok 25 - getChannels fetches correct value
ok 26 - addChannels returns number of items in list
ok 27 - addChannels adds correct value
ok 28 - setChannels throws exception with non-array argument
ok 29 - setChannels throws exception with bad argument array
ok 30 - addChannels throws exception with no arguments
ok 31 - addChannels throws exception with bad array
ok 32 - setChannels accepts empty array ref
ok 33 - getChannels throws exception with argument
ok 34 - setChannels throws exception with no argument
ok 35 - setChannels throws exception with too many argument
ok 36 - setChannels accepts undef
ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 39 - channels->other() is a valid Bio::MAGE::Association::End
ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 41 - channels->self() is a valid Bio::MAGE::Association::End
ok 42 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 43 - setFormat returns value
ok 44 - getFormat fetches correct value
ok 45 - setFormat throws exception with bad argument
ok 46 - getFormat throws exception with argument
ok 47 - setFormat throws exception with no argument
ok 48 - setFormat throws exception with too many argument
ok 49 - setFormat accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - format->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - format->self() is a valid Bio::MAGE::Association::End
ok 55 - descriptions set in new()
ok 56 - setDescriptions returns correct value
ok 57 - getDescriptions fetches correct value
ok 58 - addDescriptions returns number of items in list
ok 59 - addDescriptions adds correct value
ok 60 - setDescriptions throws exception with non-array argument
ok 61 - setDescriptions throws exception with bad argument array
ok 62 - addDescriptions throws exception with no arguments
ok 63 - addDescriptions throws exception with bad array
ok 64 - setDescriptions accepts empty array ref
ok 65 - getDescriptions throws exception with argument
ok 66 - setDescriptions throws exception with no argument
ok 67 - setDescriptions throws exception with too many argument
ok 68 - setDescriptions accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 75 - setSecurity returns value
ok 76 - getSecurity fetches correct value
ok 77 - setSecurity throws exception with bad argument
ok 78 - getSecurity throws exception with argument
ok 79 - setSecurity throws exception with no argument
ok 80 - setSecurity throws exception with too many argument
ok 81 - setSecurity accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - security->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - security->self() is a valid Bio::MAGE::Association::End
ok 87 - auditTrail set in new()
ok 88 - setAuditTrail returns correct value
ok 89 - getAuditTrail fetches correct value
ok 90 - addAuditTrail returns number of items in list
ok 91 - addAuditTrail adds correct value
ok 92 - setAuditTrail throws exception with non-array argument
ok 93 - setAuditTrail throws exception with bad argument array
ok 94 - addAuditTrail throws exception with no arguments
ok 95 - addAuditTrail throws exception with bad array
ok 96 - setAuditTrail accepts empty array ref
ok 97 - getAuditTrail throws exception with argument
ok 98 - setAuditTrail throws exception with no argument
ok 99 - setAuditTrail throws exception with too many argument
ok 100 - setAuditTrail accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 106 - propertySets set in new()
ok 107 - setPropertySets returns correct value
ok 108 - getPropertySets fetches correct value
ok 109 - addPropertySets returns number of items in list
ok 110 - addPropertySets adds correct value
ok 111 - setPropertySets throws exception with non-array argument
ok 112 - setPropertySets throws exception with bad argument array
ok 113 - addPropertySets throws exception with no arguments
ok 114 - addPropertySets throws exception with bad array
ok 115 - setPropertySets accepts empty array ref
ok 116 - getPropertySets throws exception with argument
ok 117 - setPropertySets throws exception with no argument
ok 118 - setPropertySets throws exception with too many argument
ok 119 - setPropertySets accepts undef
ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 122 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 124 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 125 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 126 - An object of class 'Bio::MAGE::BioAssay::Image' isa 'Bio::MAGE::Identifiable'
ok
t/ImageAcquisition.t .............
1..152
ok 1 - use Bio::MAGE::BioAssay::ImageAcquisition;
ok 2 - An object of class 'Bio::MAGE::BioAssay::ImageAcquisition' isa 'Bio::MAGE::BioAssay::ImageAcquisition'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - images set in new()
ok 18 - setImages returns correct value
ok 19 - getImages fetches correct value
ok 20 - addImages returns number of items in list
ok 21 - addImages adds correct value
ok 22 - setImages throws exception with non-array argument
ok 23 - setImages throws exception with bad argument array
ok 24 - addImages throws exception with no arguments
ok 25 - addImages throws exception with bad array
ok 26 - setImages accepts empty array ref
ok 27 - getImages throws exception with argument
ok 28 - setImages throws exception with no argument
ok 29 - setImages throws exception with too many argument
ok 30 - setImages accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - images->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - images->self() is a valid Bio::MAGE::Association::End
ok 36 - auditTrail set in new()
ok 37 - setAuditTrail returns correct value
ok 38 - getAuditTrail fetches correct value
ok 39 - addAuditTrail returns number of items in list
ok 40 - addAuditTrail adds correct value
ok 41 - setAuditTrail throws exception with non-array argument
ok 42 - setAuditTrail throws exception with bad argument array
ok 43 - addAuditTrail throws exception with no arguments
ok 44 - addAuditTrail throws exception with bad array
ok 45 - setAuditTrail accepts empty array ref
ok 46 - getAuditTrail throws exception with argument
ok 47 - setAuditTrail throws exception with no argument
ok 48 - setAuditTrail throws exception with too many argument
ok 49 - setAuditTrail accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 55 - propertySets set in new()
ok 56 - setPropertySets returns correct value
ok 57 - getPropertySets fetches correct value
ok 58 - addPropertySets returns number of items in list
ok 59 - addPropertySets adds correct value
ok 60 - setPropertySets throws exception with non-array argument
ok 61 - setPropertySets throws exception with bad argument array
ok 62 - addPropertySets throws exception with no arguments
ok 63 - addPropertySets throws exception with bad array
ok 64 - setPropertySets accepts empty array ref
ok 65 - getPropertySets throws exception with argument
ok 66 - setPropertySets throws exception with no argument
ok 67 - setPropertySets throws exception with too many argument
ok 68 - setPropertySets accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 74 - protocolApplications set in new()
ok 75 - setProtocolApplications returns correct value
ok 76 - getProtocolApplications fetches correct value
ok 77 - addProtocolApplications returns number of items in list
ok 78 - addProtocolApplications adds correct value
ok 79 - setProtocolApplications throws exception with non-array argument
ok 80 - setProtocolApplications throws exception with bad argument array
ok 81 - addProtocolApplications throws exception with no arguments
ok 82 - addProtocolApplications throws exception with bad array
ok 83 - setProtocolApplications accepts empty array ref
ok 84 - getProtocolApplications throws exception with argument
ok 85 - setProtocolApplications throws exception with no argument
ok 86 - setProtocolApplications throws exception with too many argument
ok 87 - setProtocolApplications accepts undef
ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 90 - protocolApplications->other() is a valid Bio::MAGE::Association::End
ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 92 - protocolApplications->self() is a valid Bio::MAGE::Association::End
ok 93 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay'
ok 94 - setTarget returns value
ok 95 - getTarget fetches correct value
ok 96 - setTarget throws exception with bad argument
ok 97 - getTarget throws exception with argument
ok 98 - setTarget throws exception with no argument
ok 99 - setTarget throws exception with too many argument
ok 100 - setTarget accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - target->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - target->self() is a valid Bio::MAGE::Association::End
ok 106 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay'
ok 107 - setPhysicalBioAssay returns value
ok 108 - getPhysicalBioAssay fetches correct value
ok 109 - setPhysicalBioAssay throws exception with bad argument
ok 110 - getPhysicalBioAssay throws exception with argument
ok 111 - setPhysicalBioAssay throws exception with no argument
ok 112 - setPhysicalBioAssay throws exception with too many argument
ok 113 - setPhysicalBioAssay accepts undef
ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 116 - physicalBioAssay->other() is a valid Bio::MAGE::Association::End
ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 118 - physicalBioAssay->self() is a valid Bio::MAGE::Association::End
ok 119 - descriptions set in new()
ok 120 - setDescriptions returns correct value
ok 121 - getDescriptions fetches correct value
ok 122 - addDescriptions returns number of items in list
ok 123 - addDescriptions adds correct value
ok 124 - setDescriptions throws exception with non-array argument
ok 125 - setDescriptions throws exception with bad argument array
ok 126 - addDescriptions throws exception with no arguments
ok 127 - addDescriptions throws exception with bad array
ok 128 - setDescriptions accepts empty array ref
ok 129 - getDescriptions throws exception with argument
ok 130 - setDescriptions throws exception with no argument
ok 131 - setDescriptions throws exception with too many argument
ok 132 - setDescriptions accepts undef
ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 135 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 137 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 138 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 139 - setSecurity returns value
ok 140 - getSecurity fetches correct value
ok 141 - setSecurity throws exception with bad argument
ok 142 - getSecurity throws exception with argument
ok 143 - setSecurity throws exception with no argument
ok 144 - setSecurity throws exception with too many argument
ok 145 - setSecurity accepts undef
ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 148 - security->other() is a valid Bio::MAGE::Association::End
ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 150 - security->self() is a valid Bio::MAGE::Association::End
ok 151 - An object of class 'Bio::MAGE::BioAssay::BioAssayTreatment' isa 'Bio::MAGE::BioAssay::BioAssayTreatment'
ok 152 - An object of class 'Bio::MAGE::BioAssay::ImageAcquisition' isa 'Bio::MAGE::BioAssay::BioAssayTreatment'
ok
t/LabeledExtract.t ...............
1..177
ok 1 - use Bio::MAGE::BioMaterial::LabeledExtract;
ok 2 - An object of class 'Bio::MAGE::BioMaterial::LabeledExtract' isa 'Bio::MAGE::BioMaterial::LabeledExtract'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - auditTrail set in new()
ok 18 - setAuditTrail returns correct value
ok 19 - getAuditTrail fetches correct value
ok 20 - addAuditTrail returns number of items in list
ok 21 - addAuditTrail adds correct value
ok 22 - setAuditTrail throws exception with non-array argument
ok 23 - setAuditTrail throws exception with bad argument array
ok 24 - addAuditTrail throws exception with no arguments
ok 25 - addAuditTrail throws exception with bad array
ok 26 - setAuditTrail accepts empty array ref
ok 27 - getAuditTrail throws exception with argument
ok 28 - setAuditTrail throws exception with no argument
ok 29 - setAuditTrail throws exception with too many argument
ok 30 - setAuditTrail accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 36 - propertySets set in new()
ok 37 - setPropertySets returns correct value
ok 38 - getPropertySets fetches correct value
ok 39 - addPropertySets returns number of items in list
ok 40 - addPropertySets adds correct value
ok 41 - setPropertySets throws exception with non-array argument
ok 42 - setPropertySets throws exception with bad argument array
ok 43 - addPropertySets throws exception with no arguments
ok 44 - addPropertySets throws exception with bad array
ok 45 - setPropertySets accepts empty array ref
ok 46 - getPropertySets throws exception with argument
ok 47 - setPropertySets throws exception with no argument
ok 48 - setPropertySets throws exception with too many argument
ok 49 - setPropertySets accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 55 - qualityControlStatistics set in new()
ok 56 - setQualityControlStatistics returns correct value
ok 57 - getQualityControlStatistics fetches correct value
ok 58 - addQualityControlStatistics returns number of items in list
ok 59 - addQualityControlStatistics adds correct value
ok 60 - setQualityControlStatistics throws exception with non-array argument
ok 61 - setQualityControlStatistics throws exception with bad argument array
ok 62 - addQualityControlStatistics throws exception with no arguments
ok 63 - addQualityControlStatistics throws exception with bad array
ok 64 - setQualityControlStatistics accepts empty array ref
ok 65 - getQualityControlStatistics throws exception with argument
ok 66 - setQualityControlStatistics throws exception with no argument
ok 67 - setQualityControlStatistics throws exception with too many argument
ok 68 - setQualityControlStatistics accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - qualityControlStatistics->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - qualityControlStatistics->self() is a valid Bio::MAGE::Association::End
ok 74 - descriptions set in new()
ok 75 - setDescriptions returns correct value
ok 76 - getDescriptions fetches correct value
ok 77 - addDescriptions returns number of items in list
ok 78 - addDescriptions adds correct value
ok 79 - setDescriptions throws exception with non-array argument
ok 80 - setDescriptions throws exception with bad argument array
ok 81 - addDescriptions throws exception with no arguments
ok 82 - addDescriptions throws exception with bad array
ok 83 - setDescriptions accepts empty array ref
ok 84 - getDescriptions throws exception with argument
ok 85 - setDescriptions throws exception with no argument
ok 86 - setDescriptions throws exception with too many argument
ok 87 - setDescriptions accepts undef
ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 90 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 92 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 93 - characteristics set in new()
ok 94 - setCharacteristics returns correct value
ok 95 - getCharacteristics fetches correct value
ok 96 - addCharacteristics returns number of items in list
ok 97 - addCharacteristics adds correct value
ok 98 - setCharacteristics throws exception with non-array argument
ok 99 - setCharacteristics throws exception with bad argument array
ok 100 - addCharacteristics throws exception with no arguments
ok 101 - addCharacteristics throws exception with bad array
ok 102 - setCharacteristics accepts empty array ref
ok 103 - getCharacteristics throws exception with argument
ok 104 - setCharacteristics throws exception with no argument
ok 105 - setCharacteristics throws exception with too many argument
ok 106 - setCharacteristics accepts undef
ok 107 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 108 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 109 - characteristics->other() is a valid Bio::MAGE::Association::End
ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 111 - characteristics->self() is a valid Bio::MAGE::Association::End
ok 112 - treatments set in new()
ok 113 - setTreatments returns correct value
ok 114 - getTreatments fetches correct value
ok 115 - addTreatments returns number of items in list
ok 116 - addTreatments adds correct value
ok 117 - setTreatments throws exception with non-array argument
ok 118 - setTreatments throws exception with bad argument array
ok 119 - addTreatments throws exception with no arguments
ok 120 - addTreatments throws exception with bad array
ok 121 - setTreatments accepts empty array ref
ok 122 - getTreatments throws exception with argument
ok 123 - setTreatments throws exception with no argument
ok 124 - setTreatments throws exception with too many argument
ok 125 - setTreatments accepts undef
ok 126 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 127 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 128 - treatments->other() is a valid Bio::MAGE::Association::End
ok 129 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 130 - treatments->self() is a valid Bio::MAGE::Association::End
ok 131 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 132 - setSecurity returns value
ok 133 - getSecurity fetches correct value
ok 134 - setSecurity throws exception with bad argument
ok 135 - getSecurity throws exception with argument
ok 136 - setSecurity throws exception with no argument
ok 137 - setSecurity throws exception with too many argument
ok 138 - setSecurity accepts undef
ok 139 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 141 - security->other() is a valid Bio::MAGE::Association::End
ok 142 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 143 - security->self() is a valid Bio::MAGE::Association::End
ok 144 - labels set in new()
ok 145 - setLabels returns correct value
ok 146 - getLabels fetches correct value
ok 147 - addLabels returns number of items in list
ok 148 - addLabels adds correct value
ok 149 - setLabels throws exception with non-array argument
ok 150 - setLabels throws exception with bad argument array
ok 151 - addLabels throws exception with no arguments
ok 152 - addLabels throws exception with bad array
ok 153 - setLabels accepts empty array ref
ok 154 - getLabels throws exception with argument
ok 155 - setLabels throws exception with no argument
ok 156 - setLabels throws exception with too many argument
ok 157 - setLabels accepts undef
ok 158 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 159 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 160 - labels->other() is a valid Bio::MAGE::Association::End
ok 161 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 162 - labels->self() is a valid Bio::MAGE::Association::End
ok 163 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 164 - setMaterialType returns value
ok 165 - getMaterialType fetches correct value
ok 166 - setMaterialType throws exception with bad argument
ok 167 - getMaterialType throws exception with argument
ok 168 - setMaterialType throws exception with no argument
ok 169 - setMaterialType throws exception with too many argument
ok 170 - setMaterialType accepts undef
ok 171 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 172 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 173 - materialType->other() is a valid Bio::MAGE::Association::End
ok 174 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 175 - materialType->self() is a valid Bio::MAGE::Association::End
ok 176 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial'
ok 177 - An object of class 'Bio::MAGE::BioMaterial::LabeledExtract' isa 'Bio::MAGE::BioMaterial::BioMaterial'
ok
t/MAGE_package.t .................
1..29
ok 1 - use Bio::MAGE;
ok 2 - number of subclasses
ok 3 - An object of class 'Bio::MAGE::NameValueType' isa 'Bio::MAGE::NameValueType'
ok 4 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable'
ok 5 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 6 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable'
ok 7 - An object of class 'Bio::MAGE' isa 'Bio::MAGE'
ok 8 - tagname
ok 9 - package count
ok 10
ok 11 - identifiers
ok 12 - objects
ok 13 - An object of class 'Bio::MAGE::AuditAndSecurity' isa 'Bio::MAGE::AuditAndSecurity'
ok 14 - An object of class 'Bio::MAGE::Description' isa 'Bio::MAGE::Description'
ok 15 - An object of class 'Bio::MAGE::Measurement' isa 'Bio::MAGE::Measurement'
ok 16 - An object of class 'Bio::MAGE::BQS' isa 'Bio::MAGE::BQS'
ok 17 - An object of class 'Bio::MAGE::BioEvent' isa 'Bio::MAGE::BioEvent'
ok 18 - An object of class 'Bio::MAGE::Protocol' isa 'Bio::MAGE::Protocol'
ok 19 - An object of class 'Bio::MAGE::BioMaterial' isa 'Bio::MAGE::BioMaterial'
ok 20 - An object of class 'Bio::MAGE::BioSequence' isa 'Bio::MAGE::BioSequence'
ok 21 - An object of class 'Bio::MAGE::DesignElement' isa 'Bio::MAGE::DesignElement'
ok 22 - An object of class 'Bio::MAGE::ArrayDesign' isa 'Bio::MAGE::ArrayDesign'
ok 23 - An object of class 'Bio::MAGE::Array' isa 'Bio::MAGE::Array'
ok 24 - An object of class 'Bio::MAGE::BioAssay' isa 'Bio::MAGE::BioAssay'
ok 25 - An object of class 'Bio::MAGE::QuantitationType' isa 'Bio::MAGE::QuantitationType'
ok 26 - An object of class 'Bio::MAGE::BioAssayData' isa 'Bio::MAGE::BioAssayData'
ok 27 - An object of class 'Bio::MAGE::Experiment' isa 'Bio::MAGE::Experiment'
ok 28 - An object of class 'Bio::MAGE::HigherLevelAnalysis' isa 'Bio::MAGE::HigherLevelAnalysis'
ok 29 - package list count
ok
t/ManufactureLIMS.t ..............
1..123
ok 1 - use Bio::MAGE::Array::ManufactureLIMS;
ok 2 - An object of class 'Bio::MAGE::Array::ManufactureLIMS' isa 'Bio::MAGE::Array::ManufactureLIMS'
ok 3 - package
ok 4 - class_name
ok 5 - quality new
ok 6 - quality getter/setter
ok 7 - quality getter throws exception with argument
ok 8 - quality setter throws exception with no argument
ok 9 - quality setter throws exception with too many argument
ok 10 - quality setter accepts undef
ok 11 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::Feature'
ok 12 - setFeature returns value
ok 13 - getFeature fetches correct value
ok 14 - setFeature throws exception with bad argument
ok 15 - getFeature throws exception with argument
ok 16 - setFeature throws exception with no argument
ok 17 - setFeature throws exception with too many argument
ok 18 - setFeature accepts undef
ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 21 - feature->other() is a valid Bio::MAGE::Association::End
ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 23 - feature->self() is a valid Bio::MAGE::Association::End
ok 24 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Description::DatabaseEntry'
ok 25 - setIdentifierLIMS returns value
ok 26 - getIdentifierLIMS fetches correct value
ok 27 - setIdentifierLIMS throws exception with bad argument
ok 28 - getIdentifierLIMS throws exception with argument
ok 29 - setIdentifierLIMS throws exception with no argument
ok 30 - setIdentifierLIMS throws exception with too many argument
ok 31 - setIdentifierLIMS accepts undef
ok 32 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 33 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 34 - identifierLIMS->other() is a valid Bio::MAGE::Association::End
ok 35 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 36 - identifierLIMS->self() is a valid Bio::MAGE::Association::End
ok 37 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial'
ok 38 - setBioMaterial returns value
ok 39 - getBioMaterial fetches correct value
ok 40 - setBioMaterial throws exception with bad argument
ok 41 - getBioMaterial throws exception with argument
ok 42 - setBioMaterial throws exception with no argument
ok 43 - setBioMaterial throws exception with too many argument
ok 44 - setBioMaterial accepts undef
ok 45 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 47 - bioMaterial->other() is a valid Bio::MAGE::Association::End
ok 48 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 49 - bioMaterial->self() is a valid Bio::MAGE::Association::End
ok 50 - descriptions set in new()
ok 51 - setDescriptions returns correct value
ok 52 - getDescriptions fetches correct value
ok 53 - addDescriptions returns number of items in list
ok 54 - addDescriptions adds correct value
ok 55 - setDescriptions throws exception with non-array argument
ok 56 - setDescriptions throws exception with bad argument array
ok 57 - addDescriptions throws exception with no arguments
ok 58 - addDescriptions throws exception with bad array
ok 59 - setDescriptions accepts empty array ref
ok 60 - getDescriptions throws exception with argument
ok 61 - setDescriptions throws exception with no argument
ok 62 - setDescriptions throws exception with too many argument
ok 63 - setDescriptions accepts undef
ok 64 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 66 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 67 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 68 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 69 - auditTrail set in new()
ok 70 - setAuditTrail returns correct value
ok 71 - getAuditTrail fetches correct value
ok 72 - addAuditTrail returns number of items in list
ok 73 - addAuditTrail adds correct value
ok 74 - setAuditTrail throws exception with non-array argument
ok 75 - setAuditTrail throws exception with bad argument array
ok 76 - addAuditTrail throws exception with no arguments
ok 77 - addAuditTrail throws exception with bad array
ok 78 - setAuditTrail accepts empty array ref
ok 79 - getAuditTrail throws exception with argument
ok 80 - setAuditTrail throws exception with no argument
ok 81 - setAuditTrail throws exception with too many argument
ok 82 - setAuditTrail accepts undef
ok 83 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 84 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 85 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 86 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 87 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 88 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 89 - setSecurity returns value
ok 90 - getSecurity fetches correct value
ok 91 - setSecurity throws exception with bad argument
ok 92 - getSecurity throws exception with argument
ok 93 - setSecurity throws exception with no argument
ok 94 - setSecurity throws exception with too many argument
ok 95 - setSecurity accepts undef
ok 96 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 98 - security->other() is a valid Bio::MAGE::Association::End
ok 99 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 100 - security->self() is a valid Bio::MAGE::Association::End
ok 101 - propertySets set in new()
ok 102 - setPropertySets returns correct value
ok 103 - getPropertySets fetches correct value
ok 104 - addPropertySets returns number of items in list
ok 105 - addPropertySets adds correct value
ok 106 - setPropertySets throws exception with non-array argument
ok 107 - setPropertySets throws exception with bad argument array
ok 108 - addPropertySets throws exception with no arguments
ok 109 - addPropertySets throws exception with bad array
ok 110 - setPropertySets accepts empty array ref
ok 111 - getPropertySets throws exception with argument
ok 112 - setPropertySets throws exception with no argument
ok 113 - setPropertySets throws exception with too many argument
ok 114 - setPropertySets accepts undef
ok 115 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 117 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 118 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 119 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 120 - An object of class 'Bio::MAGE::Array::ManufactureLIMSBiomaterial' isa 'Bio::MAGE::Array::ManufactureLIMSBiomaterial'
ok 121 - An object of class 'Bio::MAGE::Array::ManufactureLIMSBiomaterial' isa 'Bio::MAGE::Array::ManufactureLIMS'
ok 122 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable'
ok 123 - An object of class 'Bio::MAGE::Array::ManufactureLIMS' isa 'Bio::MAGE::Describable'
ok
t/ManufactureLIMSBiomaterial.t ...
1..139
ok 1 - use Bio::MAGE::Array::ManufactureLIMSBiomaterial;
ok 2 - An object of class 'Bio::MAGE::Array::ManufactureLIMSBiomaterial' isa 'Bio::MAGE::Array::ManufactureLIMSBiomaterial'
ok 3 - package
ok 4 - class_name
ok 5 - bioMaterialPlateCol new
ok 6 - bioMaterialPlateCol getter/setter
ok 7 - bioMaterialPlateCol getter throws exception with argument
ok 8 - bioMaterialPlateCol setter throws exception with no argument
ok 9 - bioMaterialPlateCol setter throws exception with too many argument
ok 10 - bioMaterialPlateCol setter accepts undef
ok 11 - bioMaterialPlateRow new
ok 12 - bioMaterialPlateRow getter/setter
ok 13 - bioMaterialPlateRow getter throws exception with argument
ok 14 - bioMaterialPlateRow setter throws exception with no argument
ok 15 - bioMaterialPlateRow setter throws exception with too many argument
ok 16 - bioMaterialPlateRow setter accepts undef
ok 17 - bioMaterialPlateIdentifier new
ok 18 - bioMaterialPlateIdentifier getter/setter
ok 19 - bioMaterialPlateIdentifier getter throws exception with argument
ok 20 - bioMaterialPlateIdentifier setter throws exception with no argument
ok 21 - bioMaterialPlateIdentifier setter throws exception with too many argument
ok 22 - bioMaterialPlateIdentifier setter accepts undef
ok 23 - quality new
ok 24 - quality getter/setter
ok 25 - quality getter throws exception with argument
ok 26 - quality setter throws exception with no argument
ok 27 - quality setter throws exception with too many argument
ok 28 - quality setter accepts undef
ok 29 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::Feature'
ok 30 - setFeature returns value
ok 31 - getFeature fetches correct value
ok 32 - setFeature throws exception with bad argument
ok 33 - getFeature throws exception with argument
ok 34 - setFeature throws exception with no argument
ok 35 - setFeature throws exception with too many argument
ok 36 - setFeature accepts undef
ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 39 - feature->other() is a valid Bio::MAGE::Association::End
ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 41 - feature->self() is a valid Bio::MAGE::Association::End
ok 42 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Description::DatabaseEntry'
ok 43 - setIdentifierLIMS returns value
ok 44 - getIdentifierLIMS fetches correct value
ok 45 - setIdentifierLIMS throws exception with bad argument
ok 46 - getIdentifierLIMS throws exception with argument
ok 47 - setIdentifierLIMS throws exception with no argument
ok 48 - setIdentifierLIMS throws exception with too many argument
ok 49 - setIdentifierLIMS accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - identifierLIMS->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - identifierLIMS->self() is a valid Bio::MAGE::Association::End
ok 55 - descriptions set in new()
ok 56 - setDescriptions returns correct value
ok 57 - getDescriptions fetches correct value
ok 58 - addDescriptions returns number of items in list
ok 59 - addDescriptions adds correct value
ok 60 - setDescriptions throws exception with non-array argument
ok 61 - setDescriptions throws exception with bad argument array
ok 62 - addDescriptions throws exception with no arguments
ok 63 - addDescriptions throws exception with bad array
ok 64 - setDescriptions accepts empty array ref
ok 65 - getDescriptions throws exception with argument
ok 66 - setDescriptions throws exception with no argument
ok 67 - setDescriptions throws exception with too many argument
ok 68 - setDescriptions accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 74 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial'
ok 75 - setBioMaterial returns value
ok 76 - getBioMaterial fetches correct value
ok 77 - setBioMaterial throws exception with bad argument
ok 78 - getBioMaterial throws exception with argument
ok 79 - setBioMaterial throws exception with no argument
ok 80 - setBioMaterial throws exception with too many argument
ok 81 - setBioMaterial accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - bioMaterial->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - bioMaterial->self() is a valid Bio::MAGE::Association::End
ok 87 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 88 - setSecurity returns value
ok 89 - getSecurity fetches correct value
ok 90 - setSecurity throws exception with bad argument
ok 91 - getSecurity throws exception with argument
ok 92 - setSecurity throws exception with no argument
ok 93 - setSecurity throws exception with too many argument
ok 94 - setSecurity accepts undef
ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 97 - security->other() is a valid Bio::MAGE::Association::End
ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 99 - security->self() is a valid Bio::MAGE::Association::End
ok 100 - auditTrail set in new()
ok 101 - setAuditTrail returns correct value
ok 102 - getAuditTrail fetches correct value
ok 103 - addAuditTrail returns number of items in list
ok 104 - addAuditTrail adds correct value
ok 105 - setAuditTrail throws exception with non-array argument
ok 106 - setAuditTrail throws exception with bad argument array
ok 107 - addAuditTrail throws exception with no arguments
ok 108 - addAuditTrail throws exception with bad array
ok 109 - setAuditTrail accepts empty array ref
ok 110 - getAuditTrail throws exception with argument
ok 111 - setAuditTrail throws exception with no argument
ok 112 - setAuditTrail throws exception with too many argument
ok 113 - setAuditTrail accepts undef
ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 116 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 118 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 119 - propertySets set in new()
ok 120 - setPropertySets returns correct value
ok 121 - getPropertySets fetches correct value
ok 122 - addPropertySets returns number of items in list
ok 123 - addPropertySets adds correct value
ok 124 - setPropertySets throws exception with non-array argument
ok 125 - setPropertySets throws exception with bad argument array
ok 126 - addPropertySets throws exception with no arguments
ok 127 - addPropertySets throws exception with bad array
ok 128 - setPropertySets accepts empty array ref
ok 129 - getPropertySets throws exception with argument
ok 130 - setPropertySets throws exception with no argument
ok 131 - setPropertySets throws exception with too many argument
ok 132 - setPropertySets accepts undef
ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 135 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 137 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 138 - An object of class 'Bio::MAGE::Array::ManufactureLIMS' isa 'Bio::MAGE::Array::ManufactureLIMS'
ok 139 - An object of class 'Bio::MAGE::Array::ManufactureLIMSBiomaterial' isa 'Bio::MAGE::Array::ManufactureLIMS'
ok
t/Map.t ..........................
1..113
ok 1 - use Bio::MAGE::BioEvent::Map;
ok 2 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::Map'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - protocolApplications set in new()
ok 18 - setProtocolApplications returns correct value
ok 19 - getProtocolApplications fetches correct value
ok 20 - addProtocolApplications returns number of items in list
ok 21 - addProtocolApplications adds correct value
ok 22 - setProtocolApplications throws exception with non-array argument
ok 23 - setProtocolApplications throws exception with bad argument array
ok 24 - addProtocolApplications throws exception with no arguments
ok 25 - addProtocolApplications throws exception with bad array
ok 26 - setProtocolApplications accepts empty array ref
ok 27 - getProtocolApplications throws exception with argument
ok 28 - setProtocolApplications throws exception with no argument
ok 29 - setProtocolApplications throws exception with too many argument
ok 30 - setProtocolApplications accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End
ok 36 - descriptions set in new()
ok 37 - setDescriptions returns correct value
ok 38 - getDescriptions fetches correct value
ok 39 - addDescriptions returns number of items in list
ok 40 - addDescriptions adds correct value
ok 41 - setDescriptions throws exception with non-array argument
ok 42 - setDescriptions throws exception with bad argument array
ok 43 - addDescriptions throws exception with no arguments
ok 44 - addDescriptions throws exception with bad array
ok 45 - setDescriptions accepts empty array ref
ok 46 - getDescriptions throws exception with argument
ok 47 - setDescriptions throws exception with no argument
ok 48 - setDescriptions throws exception with too many argument
ok 49 - setDescriptions accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 55 - auditTrail set in new()
ok 56 - setAuditTrail returns correct value
ok 57 - getAuditTrail fetches correct value
ok 58 - addAuditTrail returns number of items in list
ok 59 - addAuditTrail adds correct value
ok 60 - setAuditTrail throws exception with non-array argument
ok 61 - setAuditTrail throws exception with bad argument array
ok 62 - addAuditTrail throws exception with no arguments
ok 63 - addAuditTrail throws exception with bad array
ok 64 - setAuditTrail accepts empty array ref
ok 65 - getAuditTrail throws exception with argument
ok 66 - setAuditTrail throws exception with no argument
ok 67 - setAuditTrail throws exception with too many argument
ok 68 - setAuditTrail accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 75 - setSecurity returns value
ok 76 - getSecurity fetches correct value
ok 77 - setSecurity throws exception with bad argument
ok 78 - getSecurity throws exception with argument
ok 79 - setSecurity throws exception with no argument
ok 80 - setSecurity throws exception with too many argument
ok 81 - setSecurity accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - security->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - security->self() is a valid Bio::MAGE::Association::End
ok 87 - propertySets set in new()
ok 88 - setPropertySets returns correct value
ok 89 - getPropertySets fetches correct value
ok 90 - addPropertySets returns number of items in list
ok 91 - addPropertySets adds correct value
ok 92 - setPropertySets throws exception with non-array argument
ok 93 - setPropertySets throws exception with bad argument array
ok 94 - addPropertySets throws exception with no arguments
ok 95 - addPropertySets throws exception with bad array
ok 96 - setPropertySets accepts empty array ref
ok 97 - getPropertySets throws exception with argument
ok 98 - setPropertySets throws exception with no argument
ok 99 - setPropertySets throws exception with too many argument
ok 100 - setPropertySets accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 106 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMap' isa 'Bio::MAGE::BioAssayData::QuantitationTypeMap'
ok 107 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMap' isa 'Bio::MAGE::BioEvent::Map'
ok 108 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap'
ok 109 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioEvent::Map'
ok 110 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMap' isa 'Bio::MAGE::BioAssayData::BioAssayMap'
ok 111 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMap' isa 'Bio::MAGE::BioEvent::Map'
ok 112 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent'
ok 113 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::BioEvent'
ok
t/MassUnit.t .....................
1..46
ok 1 - use Bio::MAGE::Measurement::MassUnit;
ok 2 - An object of class 'Bio::MAGE::Measurement::MassUnit' isa 'Bio::MAGE::Measurement::MassUnit'
ok 3 - package
ok 4 - class_name
ok 5 - unitName new
ok 6 - unitName getter/setter
ok 7 - unitName getter throws exception with argument
ok 8 - unitName setter throws exception with no argument
ok 9 - unitName setter throws exception with too many argument
ok 10 - unitName setter accepts undef
ok 11 - unitNameCV new
ok 12 - unitNameCV getter/setter
ok 13 - unitNameCV getter throws exception with argument
ok 14 - unitNameCV setter throws exception with no argument
ok 15 - unitNameCV setter throws exception with too many argument
ok 16 - unitNameCV setter accepts undef
ok 17 - unitNameCV setter throws exception with bad argument
ok 18 - unitNameCV accepts kg
ok 19 - unitNameCV accepts g
ok 20 - unitNameCV accepts mg
ok 21 - unitNameCV accepts ug
ok 22 - unitNameCV accepts ng
ok 23 - unitNameCV accepts pg
ok 24 - unitNameCV accepts fg
ok 25 - unitNameCV accepts other
ok 26 - propertySets set in new()
ok 27 - setPropertySets returns correct value
ok 28 - getPropertySets fetches correct value
ok 29 - addPropertySets returns number of items in list
ok 30 - addPropertySets adds correct value
ok 31 - setPropertySets throws exception with non-array argument
ok 32 - setPropertySets throws exception with bad argument array
ok 33 - addPropertySets throws exception with no arguments
ok 34 - addPropertySets throws exception with bad array
ok 35 - setPropertySets accepts empty array ref
ok 36 - getPropertySets throws exception with argument
ok 37 - setPropertySets throws exception with no argument
ok 38 - setPropertySets throws exception with too many argument
ok 39 - setPropertySets accepts undef
ok 40 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 42 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 43 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 44 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 45 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit'
ok 46 - An object of class 'Bio::MAGE::Measurement::MassUnit' isa 'Bio::MAGE::Measurement::Unit'
ok
t/MeasuredBioAssay.t .............
1..158
ok 1 - use Bio::MAGE::BioAssay::MeasuredBioAssay;
ok 2 - An object of class 'Bio::MAGE::BioAssay::MeasuredBioAssay' isa 'Bio::MAGE::BioAssay::MeasuredBioAssay'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - channels set in new()
ok 18 - setChannels returns correct value
ok 19 - getChannels fetches correct value
ok 20 - addChannels returns number of items in list
ok 21 - addChannels adds correct value
ok 22 - setChannels throws exception with non-array argument
ok 23 - setChannels throws exception with bad argument array
ok 24 - addChannels throws exception with no arguments
ok 25 - addChannels throws exception with bad array
ok 26 - setChannels accepts empty array ref
ok 27 - getChannels throws exception with argument
ok 28 - setChannels throws exception with no argument
ok 29 - setChannels throws exception with too many argument
ok 30 - setChannels accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - channels->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - channels->self() is a valid Bio::MAGE::Association::End
ok 36 - auditTrail set in new()
ok 37 - setAuditTrail returns correct value
ok 38 - getAuditTrail fetches correct value
ok 39 - addAuditTrail returns number of items in list
ok 40 - addAuditTrail adds correct value
ok 41 - setAuditTrail throws exception with non-array argument
ok 42 - setAuditTrail throws exception with bad argument array
ok 43 - addAuditTrail throws exception with no arguments
ok 44 - addAuditTrail throws exception with bad array
ok 45 - setAuditTrail accepts empty array ref
ok 46 - getAuditTrail throws exception with argument
ok 47 - setAuditTrail throws exception with no argument
ok 48 - setAuditTrail throws exception with too many argument
ok 49 - setAuditTrail accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 55 - propertySets set in new()
ok 56 - setPropertySets returns correct value
ok 57 - getPropertySets fetches correct value
ok 58 - addPropertySets returns number of items in list
ok 59 - addPropertySets adds correct value
ok 60 - setPropertySets throws exception with non-array argument
ok 61 - setPropertySets throws exception with bad argument array
ok 62 - addPropertySets throws exception with no arguments
ok 63 - addPropertySets throws exception with bad array
ok 64 - setPropertySets accepts empty array ref
ok 65 - getPropertySets throws exception with argument
ok 66 - setPropertySets throws exception with no argument
ok 67 - setPropertySets throws exception with too many argument
ok 68 - setPropertySets accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 74 - bioAssayFactorValues set in new()
ok 75 - setBioAssayFactorValues returns correct value
ok 76 - getBioAssayFactorValues fetches correct value
ok 77 - addBioAssayFactorValues returns number of items in list
ok 78 - addBioAssayFactorValues adds correct value
ok 79 - setBioAssayFactorValues throws exception with non-array argument
ok 80 - setBioAssayFactorValues throws exception with bad argument array
ok 81 - addBioAssayFactorValues throws exception with no arguments
ok 82 - addBioAssayFactorValues throws exception with bad array
ok 83 - setBioAssayFactorValues accepts empty array ref
ok 84 - getBioAssayFactorValues throws exception with argument
ok 85 - setBioAssayFactorValues throws exception with no argument
ok 86 - setBioAssayFactorValues throws exception with too many argument
ok 87 - setBioAssayFactorValues accepts undef
ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 90 - bioAssayFactorValues->other() is a valid Bio::MAGE::Association::End
ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 92 - bioAssayFactorValues->self() is a valid Bio::MAGE::Association::End
ok 93 - An object of class 'Bio::MAGE::BioAssay::FeatureExtraction' isa 'Bio::MAGE::BioAssay::FeatureExtraction'
ok 94 - setFeatureExtraction returns value
ok 95 - getFeatureExtraction fetches correct value
ok 96 - setFeatureExtraction throws exception with bad argument
ok 97 - getFeatureExtraction throws exception with argument
ok 98 - setFeatureExtraction throws exception with no argument
ok 99 - setFeatureExtraction throws exception with too many argument
ok 100 - setFeatureExtraction accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - featureExtraction->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - featureExtraction->self() is a valid Bio::MAGE::Association::End
ok 106 - descriptions set in new()
ok 107 - setDescriptions returns correct value
ok 108 - getDescriptions fetches correct value
ok 109 - addDescriptions returns number of items in list
ok 110 - addDescriptions adds correct value
ok 111 - setDescriptions throws exception with non-array argument
ok 112 - setDescriptions throws exception with bad argument array
ok 113 - addDescriptions throws exception with no arguments
ok 114 - addDescriptions throws exception with bad array
ok 115 - setDescriptions accepts empty array ref
ok 116 - getDescriptions throws exception with argument
ok 117 - setDescriptions throws exception with no argument
ok 118 - setDescriptions throws exception with too many argument
ok 119 - setDescriptions accepts undef
ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 122 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 124 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 125 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 126 - setSecurity returns value
ok 127 - getSecurity fetches correct value
ok 128 - setSecurity throws exception with bad argument
ok 129 - getSecurity throws exception with argument
ok 130 - setSecurity throws exception with no argument
ok 131 - setSecurity throws exception with too many argument
ok 132 - setSecurity accepts undef
ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 135 - security->other() is a valid Bio::MAGE::Association::End
ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 137 - security->self() is a valid Bio::MAGE::Association::End
ok 138 - measuredBioAssayData set in new()
ok 139 - setMeasuredBioAssayData returns correct value
ok 140 - getMeasuredBioAssayData fetches correct value
ok 141 - addMeasuredBioAssayData returns number of items in list
ok 142 - addMeasuredBioAssayData adds correct value
ok 143 - setMeasuredBioAssayData throws exception with non-array argument
ok 144 - setMeasuredBioAssayData throws exception with bad argument array
ok 145 - addMeasuredBioAssayData throws exception with no arguments
ok 146 - addMeasuredBioAssayData throws exception with bad array
ok 147 - setMeasuredBioAssayData accepts empty array ref
ok 148 - getMeasuredBioAssayData throws exception with argument
ok 149 - setMeasuredBioAssayData throws exception with no argument
ok 150 - setMeasuredBioAssayData throws exception with too many argument
ok 151 - setMeasuredBioAssayData accepts undef
ok 152 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 154 - measuredBioAssayData->other() is a valid Bio::MAGE::Association::End
ok 155 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 156 - measuredBioAssayData->self() is a valid Bio::MAGE::Association::End
ok 157 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::BioAssay::BioAssay'
ok 158 - An object of class 'Bio::MAGE::BioAssay::MeasuredBioAssay' isa 'Bio::MAGE::BioAssay::BioAssay'
ok
t/MeasuredBioAssayData.t .........
1..159
ok 1 - use Bio::MAGE::BioAssayData::MeasuredBioAssayData;
ok 2 - An object of class 'Bio::MAGE::BioAssayData::MeasuredBioAssayData' isa 'Bio::MAGE::BioAssayData::MeasuredBioAssayData'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::BioAssayData::BioAssayDimension'
ok 18 - setBioAssayDimension returns value
ok 19 - getBioAssayDimension fetches correct value
ok 20 - setBioAssayDimension throws exception with bad argument
ok 21 - getBioAssayDimension throws exception with argument
ok 22 - setBioAssayDimension throws exception with no argument
ok 23 - setBioAssayDimension throws exception with too many argument
ok 24 - setBioAssayDimension accepts undef
ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 27 - bioAssayDimension->other() is a valid Bio::MAGE::Association::End
ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 29 - bioAssayDimension->self() is a valid Bio::MAGE::Association::End
ok 30 - auditTrail set in new()
ok 31 - setAuditTrail returns correct value
ok 32 - getAuditTrail fetches correct value
ok 33 - addAuditTrail returns number of items in list
ok 34 - addAuditTrail adds correct value
ok 35 - setAuditTrail throws exception with non-array argument
ok 36 - setAuditTrail throws exception with bad argument array
ok 37 - addAuditTrail throws exception with no arguments
ok 38 - addAuditTrail throws exception with bad array
ok 39 - setAuditTrail accepts empty array ref
ok 40 - getAuditTrail throws exception with argument
ok 41 - setAuditTrail throws exception with no argument
ok 42 - setAuditTrail throws exception with too many argument
ok 43 - setAuditTrail accepts undef
ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 46 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 48 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 49 - propertySets set in new()
ok 50 - setPropertySets returns correct value
ok 51 - getPropertySets fetches correct value
ok 52 - addPropertySets returns number of items in list
ok 53 - addPropertySets adds correct value
ok 54 - setPropertySets throws exception with non-array argument
ok 55 - setPropertySets throws exception with bad argument array
ok 56 - addPropertySets throws exception with no arguments
ok 57 - addPropertySets throws exception with bad array
ok 58 - setPropertySets accepts empty array ref
ok 59 - getPropertySets throws exception with argument
ok 60 - setPropertySets throws exception with no argument
ok 61 - setPropertySets throws exception with too many argument
ok 62 - setPropertySets accepts undef
ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 65 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 67 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 68 - summaryStatistics set in new()
ok 69 - setSummaryStatistics returns correct value
ok 70 - getSummaryStatistics fetches correct value
ok 71 - addSummaryStatistics returns number of items in list
ok 72 - addSummaryStatistics adds correct value
ok 73 - setSummaryStatistics throws exception with non-array argument
ok 74 - setSummaryStatistics throws exception with bad argument array
ok 75 - addSummaryStatistics throws exception with no arguments
ok 76 - addSummaryStatistics throws exception with bad array
ok 77 - setSummaryStatistics accepts empty array ref
ok 78 - getSummaryStatistics throws exception with argument
ok 79 - setSummaryStatistics throws exception with no argument
ok 80 - setSummaryStatistics throws exception with too many argument
ok 81 - setSummaryStatistics accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - summaryStatistics->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - summaryStatistics->self() is a valid Bio::MAGE::Association::End
ok 87 - descriptions set in new()
ok 88 - setDescriptions returns correct value
ok 89 - getDescriptions fetches correct value
ok 90 - addDescriptions returns number of items in list
ok 91 - addDescriptions adds correct value
ok 92 - setDescriptions throws exception with non-array argument
ok 93 - setDescriptions throws exception with bad argument array
ok 94 - addDescriptions throws exception with no arguments
ok 95 - addDescriptions throws exception with bad array
ok 96 - setDescriptions accepts empty array ref
ok 97 - getDescriptions throws exception with argument
ok 98 - setDescriptions throws exception with no argument
ok 99 - setDescriptions throws exception with too many argument
ok 100 - setDescriptions accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 106 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension'
ok 107 - setDesignElementDimension returns value
ok 108 - getDesignElementDimension fetches correct value
ok 109 - setDesignElementDimension throws exception with bad argument
ok 110 - getDesignElementDimension throws exception with argument
ok 111 - setDesignElementDimension throws exception with no argument
ok 112 - setDesignElementDimension throws exception with too many argument
ok 113 - setDesignElementDimension accepts undef
ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 116 - designElementDimension->other() is a valid Bio::MAGE::Association::End
ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 118 - designElementDimension->self() is a valid Bio::MAGE::Association::End
ok 119 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::BioAssayData::QuantitationTypeDimension'
ok 120 - setQuantitationTypeDimension returns value
ok 121 - getQuantitationTypeDimension fetches correct value
ok 122 - setQuantitationTypeDimension throws exception with bad argument
ok 123 - getQuantitationTypeDimension throws exception with argument
ok 124 - setQuantitationTypeDimension throws exception with no argument
ok 125 - setQuantitationTypeDimension throws exception with too many argument
ok 126 - setQuantitationTypeDimension accepts undef
ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 129 - quantitationTypeDimension->other() is a valid Bio::MAGE::Association::End
ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 131 - quantitationTypeDimension->self() is a valid Bio::MAGE::Association::End
ok 132 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 133 - setSecurity returns value
ok 134 - getSecurity fetches correct value
ok 135 - setSecurity throws exception with bad argument
ok 136 - getSecurity throws exception with argument
ok 137 - setSecurity throws exception with no argument
ok 138 - setSecurity throws exception with too many argument
ok 139 - setSecurity accepts undef
ok 140 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 141 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 142 - security->other() is a valid Bio::MAGE::Association::End
ok 143 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 144 - security->self() is a valid Bio::MAGE::Association::End
ok 145 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues'
ok 146 - setBioDataValues returns value
ok 147 - getBioDataValues fetches correct value
ok 148 - setBioDataValues throws exception with bad argument
ok 149 - getBioDataValues throws exception with argument
ok 150 - setBioDataValues throws exception with no argument
ok 151 - setBioDataValues throws exception with too many argument
ok 152 - setBioDataValues accepts undef
ok 153 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 155 - bioDataValues->other() is a valid Bio::MAGE::Association::End
ok 156 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 157 - bioDataValues->self() is a valid Bio::MAGE::Association::End
ok 158 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData'
ok 159 - An object of class 'Bio::MAGE::BioAssayData::MeasuredBioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData'
ok
t/MeasuredSignal.t ...............
1..171
ok 1 - use Bio::MAGE::QuantitationType::MeasuredSignal;
ok 2 - An object of class 'Bio::MAGE::QuantitationType::MeasuredSignal' isa 'Bio::MAGE::QuantitationType::MeasuredSignal'
ok 3 - package
ok 4 - class_name
ok 5 - isBackground new
ok 6 - isBackground getter/setter
ok 7 - isBackground getter throws exception with argument
ok 8 - isBackground setter throws exception with no argument
ok 9 - isBackground setter throws exception with too many argument
ok 10 - isBackground setter accepts undef
ok 11 - identifier new
ok 12 - identifier getter/setter
ok 13 - identifier getter throws exception with argument
ok 14 - identifier setter throws exception with no argument
ok 15 - identifier setter throws exception with too many argument
ok 16 - identifier setter accepts undef
ok 17 - name new
ok 18 - name getter/setter
ok 19 - name getter throws exception with argument
ok 20 - name setter throws exception with no argument
ok 21 - name setter throws exception with too many argument
ok 22 - name setter accepts undef
ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 24 - setDataType returns value
ok 25 - getDataType fetches correct value
ok 26 - setDataType throws exception with bad argument
ok 27 - getDataType throws exception with argument
ok 28 - setDataType throws exception with no argument
ok 29 - setDataType throws exception with too many argument
ok 30 - setDataType accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - dataType->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - dataType->self() is a valid Bio::MAGE::Association::End
ok 36 - descriptions set in new()
ok 37 - setDescriptions returns correct value
ok 38 - getDescriptions fetches correct value
ok 39 - addDescriptions returns number of items in list
ok 40 - addDescriptions adds correct value
ok 41 - setDescriptions throws exception with non-array argument
ok 42 - setDescriptions throws exception with bad argument array
ok 43 - addDescriptions throws exception with no arguments
ok 44 - addDescriptions throws exception with bad array
ok 45 - setDescriptions accepts empty array ref
ok 46 - getDescriptions throws exception with argument
ok 47 - setDescriptions throws exception with no argument
ok 48 - setDescriptions throws exception with too many argument
ok 49 - setDescriptions accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 55 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 56 - setScale returns value
ok 57 - getScale fetches correct value
ok 58 - setScale throws exception with bad argument
ok 59 - getScale throws exception with argument
ok 60 - setScale throws exception with no argument
ok 61 - setScale throws exception with too many argument
ok 62 - setScale accepts undef
ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 65 - scale->other() is a valid Bio::MAGE::Association::End
ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 67 - scale->self() is a valid Bio::MAGE::Association::End
ok 68 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 69 - setSecurity returns value
ok 70 - getSecurity fetches correct value
ok 71 - setSecurity throws exception with bad argument
ok 72 - getSecurity throws exception with argument
ok 73 - setSecurity throws exception with no argument
ok 74 - setSecurity throws exception with too many argument
ok 75 - setSecurity accepts undef
ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 78 - security->other() is a valid Bio::MAGE::Association::End
ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 80 - security->self() is a valid Bio::MAGE::Association::End
ok 81 - auditTrail set in new()
ok 82 - setAuditTrail returns correct value
ok 83 - getAuditTrail fetches correct value
ok 84 - addAuditTrail returns number of items in list
ok 85 - addAuditTrail adds correct value
ok 86 - setAuditTrail throws exception with non-array argument
ok 87 - setAuditTrail throws exception with bad argument array
ok 88 - addAuditTrail throws exception with no arguments
ok 89 - addAuditTrail throws exception with bad array
ok 90 - setAuditTrail accepts empty array ref
ok 91 - getAuditTrail throws exception with argument
ok 92 - setAuditTrail throws exception with no argument
ok 93 - setAuditTrail throws exception with too many argument
ok 94 - setAuditTrail accepts undef
ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 100 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel'
ok 101 - setChannel returns value
ok 102 - getChannel fetches correct value
ok 103 - setChannel throws exception with bad argument
ok 104 - getChannel throws exception with argument
ok 105 - setChannel throws exception with no argument
ok 106 - setChannel throws exception with too many argument
ok 107 - setChannel accepts undef
ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 110 - channel->other() is a valid Bio::MAGE::Association::End
ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 112 - channel->self() is a valid Bio::MAGE::Association::End
ok 113 - propertySets set in new()
ok 114 - setPropertySets returns correct value
ok 115 - getPropertySets fetches correct value
ok 116 - addPropertySets returns number of items in list
ok 117 - addPropertySets adds correct value
ok 118 - setPropertySets throws exception with non-array argument
ok 119 - setPropertySets throws exception with bad argument array
ok 120 - addPropertySets throws exception with no arguments
ok 121 - addPropertySets throws exception with bad array
ok 122 - setPropertySets accepts empty array ref
ok 123 - getPropertySets throws exception with argument
ok 124 - setPropertySets throws exception with no argument
ok 125 - setPropertySets throws exception with too many argument
ok 126 - setPropertySets accepts undef
ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 132 - confidenceIndicators set in new()
ok 133 - setConfidenceIndicators returns correct value
ok 134 - getConfidenceIndicators fetches correct value
ok 135 - addConfidenceIndicators returns number of items in list
ok 136 - addConfidenceIndicators adds correct value
ok 137 - setConfidenceIndicators throws exception with non-array argument
ok 138 - setConfidenceIndicators throws exception with bad argument array
ok 139 - addConfidenceIndicators throws exception with no arguments
ok 140 - addConfidenceIndicators throws exception with bad array
ok 141 - setConfidenceIndicators accepts empty array ref
ok 142 - getConfidenceIndicators throws exception with argument
ok 143 - setConfidenceIndicators throws exception with no argument
ok 144 - setConfidenceIndicators throws exception with too many argument
ok 145 - setConfidenceIndicators accepts undef
ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End
ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End
ok 151 - quantitationTypeMaps set in new()
ok 152 - setQuantitationTypeMaps returns correct value
ok 153 - getQuantitationTypeMaps fetches correct value
ok 154 - addQuantitationTypeMaps returns number of items in list
ok 155 - addQuantitationTypeMaps adds correct value
ok 156 - setQuantitationTypeMaps throws exception with non-array argument
ok 157 - setQuantitationTypeMaps throws exception with bad argument array
ok 158 - addQuantitationTypeMaps throws exception with no arguments
ok 159 - addQuantitationTypeMaps throws exception with bad array
ok 160 - setQuantitationTypeMaps accepts empty array ref
ok 161 - getQuantitationTypeMaps throws exception with argument
ok 162 - setQuantitationTypeMaps throws exception with no argument
ok 163 - setQuantitationTypeMaps throws exception with too many argument
ok 164 - setQuantitationTypeMaps accepts undef
ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End
ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End
ok 170 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType'
ok 171 - An object of class 'Bio::MAGE::QuantitationType::MeasuredSignal' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType'
ok
t/Measurement.t ..................
1..74
ok 1 - use Bio::MAGE::Measurement::Measurement;
ok 2 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement'
ok 3 - package
ok 4 - class_name
ok 5 - value new
ok 6 - value getter/setter
ok 7 - value getter throws exception with argument
ok 8 - value setter throws exception with no argument
ok 9 - value setter throws exception with too many argument
ok 10 - value setter accepts undef
ok 11 - otherKind new
ok 12 - otherKind getter/setter
ok 13 - otherKind getter throws exception with argument
ok 14 - otherKind setter throws exception with no argument
ok 15 - otherKind setter throws exception with too many argument
ok 16 - otherKind setter accepts undef
ok 17 - type new
ok 18 - type getter/setter
ok 19 - type getter throws exception with argument
ok 20 - type setter throws exception with no argument
ok 21 - type setter throws exception with too many argument
ok 22 - type setter accepts undef
ok 23 - type setter throws exception with bad argument
ok 24 - type accepts absolute
ok 25 - type accepts change
ok 26 - kindCV new
ok 27 - kindCV getter/setter
ok 28 - kindCV getter throws exception with argument
ok 29 - kindCV setter throws exception with no argument
ok 30 - kindCV setter throws exception with too many argument
ok 31 - kindCV setter accepts undef
ok 32 - kindCV setter throws exception with bad argument
ok 33 - kindCV accepts time
ok 34 - kindCV accepts distance
ok 35 - kindCV accepts temperature
ok 36 - kindCV accepts quantity
ok 37 - kindCV accepts mass
ok 38 - kindCV accepts volume
ok 39 - kindCV accepts concentration
ok 40 - kindCV accepts other
ok 41 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit'
ok 42 - setUnit returns value
ok 43 - getUnit fetches correct value
ok 44 - setUnit throws exception with bad argument
ok 45 - getUnit throws exception with argument
ok 46 - setUnit throws exception with no argument
ok 47 - setUnit throws exception with too many argument
ok 48 - setUnit accepts undef
ok 49 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 50 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 51 - unit->other() is a valid Bio::MAGE::Association::End
ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 53 - unit->self() is a valid Bio::MAGE::Association::End
ok 54 - propertySets set in new()
ok 55 - setPropertySets returns correct value
ok 56 - getPropertySets fetches correct value
ok 57 - addPropertySets returns number of items in list
ok 58 - addPropertySets adds correct value
ok 59 - setPropertySets throws exception with non-array argument
ok 60 - setPropertySets throws exception with bad argument array
ok 61 - addPropertySets throws exception with no arguments
ok 62 - addPropertySets throws exception with bad array
ok 63 - setPropertySets accepts empty array ref
ok 64 - getPropertySets throws exception with argument
ok 65 - setPropertySets throws exception with no argument
ok 66 - setPropertySets throws exception with too many argument
ok 67 - setPropertySets accepts undef
ok 68 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 69 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 70 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 72 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 73 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable'
ok 74 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Extendable'
ok
t/Measurement_package.t ..........
1..14
ok 1 - use Bio::MAGE::Measurement;
ok 2 - number of subclasses
ok 3 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement'
ok 4 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit'
ok 5 - An object of class 'Bio::MAGE::Measurement::TimeUnit' isa 'Bio::MAGE::Measurement::TimeUnit'
ok 6 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit'
ok 7 - An object of class 'Bio::MAGE::Measurement::TemperatureUnit' isa 'Bio::MAGE::Measurement::TemperatureUnit'
ok 8 - An object of class 'Bio::MAGE::Measurement::QuantityUnit' isa 'Bio::MAGE::Measurement::QuantityUnit'
ok 9 - An object of class 'Bio::MAGE::Measurement::MassUnit' isa 'Bio::MAGE::Measurement::MassUnit'
ok 10 - An object of class 'Bio::MAGE::Measurement::VolumeUnit' isa 'Bio::MAGE::Measurement::VolumeUnit'
ok 11 - An object of class 'Bio::MAGE::Measurement::ConcentrationUnit' isa 'Bio::MAGE::Measurement::ConcentrationUnit'
ok 12 - An object of class 'Bio::MAGE::Measurement' isa 'Bio::MAGE::Measurement'
ok 13 - tagname
ok 14 - xml_lists
ok
t/MismatchInformation.t ..........
1..43
ok 1 - use Bio::MAGE::DesignElement::MismatchInformation;
ok 2 - An object of class 'Bio::MAGE::DesignElement::MismatchInformation' isa 'Bio::MAGE::DesignElement::MismatchInformation'
ok 3 - package
ok 4 - class_name
ok 5 - replacedLength new
ok 6 - replacedLength getter/setter
ok 7 - replacedLength getter throws exception with argument
ok 8 - replacedLength setter throws exception with no argument
ok 9 - replacedLength setter throws exception with too many argument
ok 10 - replacedLength setter accepts undef
ok 11 - startCoord new
ok 12 - startCoord getter/setter
ok 13 - startCoord getter throws exception with argument
ok 14 - startCoord setter throws exception with no argument
ok 15 - startCoord setter throws exception with too many argument
ok 16 - startCoord setter accepts undef
ok 17 - newSequence new
ok 18 - newSequence getter/setter
ok 19 - newSequence getter throws exception with argument
ok 20 - newSequence setter throws exception with no argument
ok 21 - newSequence setter throws exception with too many argument
ok 22 - newSequence setter accepts undef
ok 23 - propertySets set in new()
ok 24 - setPropertySets returns correct value
ok 25 - getPropertySets fetches correct value
ok 26 - addPropertySets returns number of items in list
ok 27 - addPropertySets adds correct value
ok 28 - setPropertySets throws exception with non-array argument
ok 29 - setPropertySets throws exception with bad argument array
ok 30 - addPropertySets throws exception with no arguments
ok 31 - addPropertySets throws exception with bad array
ok 32 - setPropertySets accepts empty array ref
ok 33 - getPropertySets throws exception with argument
ok 34 - setPropertySets throws exception with no argument
ok 35 - setPropertySets throws exception with too many argument
ok 36 - setPropertySets accepts undef
ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 39 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 41 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 42 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable'
ok 43 - An object of class 'Bio::MAGE::DesignElement::MismatchInformation' isa 'Bio::MAGE::Extendable'
ok
t/NameValueType.t ................
1..41
ok 1 - use Bio::MAGE::NameValueType;
ok 2 - An object of class 'Bio::MAGE::NameValueType' isa 'Bio::MAGE::NameValueType'
ok 3 - package
ok 4 - class_name
ok 5 - value new
ok 6 - value getter/setter
ok 7 - value getter throws exception with argument
ok 8 - value setter throws exception with no argument
ok 9 - value setter throws exception with too many argument
ok 10 - value setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - type new
ok 18 - type getter/setter
ok 19 - type getter throws exception with argument
ok 20 - type setter throws exception with no argument
ok 21 - type setter throws exception with too many argument
ok 22 - type setter accepts undef
ok 23 - propertySets set in new()
ok 24 - setPropertySets returns correct value
ok 25 - getPropertySets fetches correct value
ok 26 - addPropertySets returns number of items in list
ok 27 - addPropertySets adds correct value
ok 28 - setPropertySets throws exception with non-array argument
ok 29 - setPropertySets throws exception with bad argument array
ok 30 - addPropertySets throws exception with no arguments
ok 31 - addPropertySets throws exception with bad array
ok 32 - setPropertySets accepts empty array ref
ok 33 - getPropertySets throws exception with argument
ok 34 - setPropertySets throws exception with no argument
ok 35 - setPropertySets throws exception with too many argument
ok 36 - setPropertySets accepts undef
ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 39 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 41 - propertySets->self() is a valid Bio::MAGE::Association::End
ok
t/Node.t .........................
1..133
ok 1 - use Bio::MAGE::HigherLevelAnalysis::Node;
ok 2 - An object of class 'Bio::MAGE::HigherLevelAnalysis::Node' isa 'Bio::MAGE::HigherLevelAnalysis::Node'
ok 3 - package
ok 4 - class_name
ok 5 - nodeValue set in new()
ok 6 - setNodeValue returns correct value
ok 7 - getNodeValue fetches correct value
ok 8 - addNodeValue returns number of items in list
ok 9 - addNodeValue adds correct value
ok 10 - setNodeValue throws exception with non-array argument
ok 11 - setNodeValue throws exception with bad argument array
ok 12 - addNodeValue throws exception with no arguments
ok 13 - addNodeValue throws exception with bad array
ok 14 - setNodeValue accepts empty array ref
ok 15 - getNodeValue throws exception with argument
ok 16 - setNodeValue throws exception with no argument
ok 17 - setNodeValue throws exception with too many argument
ok 18 - setNodeValue accepts undef
ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 21 - nodeValue->other() is a valid Bio::MAGE::Association::End
ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 23 - nodeValue->self() is a valid Bio::MAGE::Association::End
ok 24 - descriptions set in new()
ok 25 - setDescriptions returns correct value
ok 26 - getDescriptions fetches correct value
ok 27 - addDescriptions returns number of items in list
ok 28 - addDescriptions adds correct value
ok 29 - setDescriptions throws exception with non-array argument
ok 30 - setDescriptions throws exception with bad argument array
ok 31 - addDescriptions throws exception with no arguments
ok 32 - addDescriptions throws exception with bad array
ok 33 - setDescriptions accepts empty array ref
ok 34 - getDescriptions throws exception with argument
ok 35 - setDescriptions throws exception with no argument
ok 36 - setDescriptions throws exception with too many argument
ok 37 - setDescriptions accepts undef
ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 40 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 42 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 43 - auditTrail set in new()
ok 44 - setAuditTrail returns correct value
ok 45 - getAuditTrail fetches correct value
ok 46 - addAuditTrail returns number of items in list
ok 47 - addAuditTrail adds correct value
ok 48 - setAuditTrail throws exception with non-array argument
ok 49 - setAuditTrail throws exception with bad argument array
ok 50 - addAuditTrail throws exception with no arguments
ok 51 - addAuditTrail throws exception with bad array
ok 52 - setAuditTrail accepts empty array ref
ok 53 - getAuditTrail throws exception with argument
ok 54 - setAuditTrail throws exception with no argument
ok 55 - setAuditTrail throws exception with too many argument
ok 56 - setAuditTrail accepts undef
ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 59 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 61 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 62 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 63 - setSecurity returns value
ok 64 - getSecurity fetches correct value
ok 65 - setSecurity throws exception with bad argument
ok 66 - getSecurity throws exception with argument
ok 67 - setSecurity throws exception with no argument
ok 68 - setSecurity throws exception with too many argument
ok 69 - setSecurity accepts undef
ok 70 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 72 - security->other() is a valid Bio::MAGE::Association::End
ok 73 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 74 - security->self() is a valid Bio::MAGE::Association::End
ok 75 - nodes set in new()
ok 76 - setNodes returns correct value
ok 77 - getNodes fetches correct value
ok 78 - addNodes returns number of items in list
ok 79 - addNodes adds correct value
ok 80 - setNodes throws exception with non-array argument
ok 81 - setNodes throws exception with bad argument array
ok 82 - addNodes throws exception with no arguments
ok 83 - addNodes throws exception with bad array
ok 84 - setNodes accepts empty array ref
ok 85 - getNodes throws exception with argument
ok 86 - setNodes throws exception with no argument
ok 87 - setNodes throws exception with too many argument
ok 88 - setNodes accepts undef
ok 89 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 90 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 91 - nodes->other() is a valid Bio::MAGE::Association::End
ok 92 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 93 - nodes->self() is a valid Bio::MAGE::Association::End
ok 94 - nodeContents set in new()
ok 95 - setNodeContents returns correct value
ok 96 - getNodeContents fetches correct value
ok 97 - addNodeContents returns number of items in list
ok 98 - addNodeContents adds correct value
ok 99 - setNodeContents throws exception with non-array argument
ok 100 - setNodeContents throws exception with bad argument array
ok 101 - addNodeContents throws exception with no arguments
ok 102 - addNodeContents throws exception with bad array
ok 103 - setNodeContents accepts empty array ref
ok 104 - getNodeContents throws exception with argument
ok 105 - setNodeContents throws exception with no argument
ok 106 - setNodeContents throws exception with too many argument
ok 107 - setNodeContents accepts undef
ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 110 - nodeContents->other() is a valid Bio::MAGE::Association::End
ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 112 - nodeContents->self() is a valid Bio::MAGE::Association::End
ok 113 - propertySets set in new()
ok 114 - setPropertySets returns correct value
ok 115 - getPropertySets fetches correct value
ok 116 - addPropertySets returns number of items in list
ok 117 - addPropertySets adds correct value
ok 118 - setPropertySets throws exception with non-array argument
ok 119 - setPropertySets throws exception with bad argument array
ok 120 - addPropertySets throws exception with no arguments
ok 121 - addPropertySets throws exception with bad array
ok 122 - setPropertySets accepts empty array ref
ok 123 - getPropertySets throws exception with argument
ok 124 - setPropertySets throws exception with no argument
ok 125 - setPropertySets throws exception with too many argument
ok 126 - setPropertySets accepts undef
ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 132 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable'
ok 133 - An object of class 'Bio::MAGE::HigherLevelAnalysis::Node' isa 'Bio::MAGE::Describable'
ok
t/NodeContents.t .................
1..115
ok 1 - use Bio::MAGE::HigherLevelAnalysis::NodeContents;
ok 2 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeContents' isa 'Bio::MAGE::HigherLevelAnalysis::NodeContents'
ok 3 - package
ok 4 - class_name
ok 5 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension'
ok 6 - setDesignElementDimension returns value
ok 7 - getDesignElementDimension fetches correct value
ok 8 - setDesignElementDimension throws exception with bad argument
ok 9 - getDesignElementDimension throws exception with argument
ok 10 - setDesignElementDimension throws exception with no argument
ok 11 - setDesignElementDimension throws exception with too many argument
ok 12 - setDesignElementDimension accepts undef
ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 15 - designElementDimension->other() is a valid Bio::MAGE::Association::End
ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 17 - designElementDimension->self() is a valid Bio::MAGE::Association::End
ok 18 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::BioAssayData::BioAssayDimension'
ok 19 - setBioAssayDimension returns value
ok 20 - getBioAssayDimension fetches correct value
ok 21 - setBioAssayDimension throws exception with bad argument
ok 22 - getBioAssayDimension throws exception with argument
ok 23 - setBioAssayDimension throws exception with no argument
ok 24 - setBioAssayDimension throws exception with too many argument
ok 25 - setBioAssayDimension accepts undef
ok 26 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 27 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 28 - bioAssayDimension->other() is a valid Bio::MAGE::Association::End
ok 29 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 30 - bioAssayDimension->self() is a valid Bio::MAGE::Association::End
ok 31 - descriptions set in new()
ok 32 - setDescriptions returns correct value
ok 33 - getDescriptions fetches correct value
ok 34 - addDescriptions returns number of items in list
ok 35 - addDescriptions adds correct value
ok 36 - setDescriptions throws exception with non-array argument
ok 37 - setDescriptions throws exception with bad argument array
ok 38 - addDescriptions throws exception with no arguments
ok 39 - addDescriptions throws exception with bad array
ok 40 - setDescriptions accepts empty array ref
ok 41 - getDescriptions throws exception with argument
ok 42 - setDescriptions throws exception with no argument
ok 43 - setDescriptions throws exception with too many argument
ok 44 - setDescriptions accepts undef
ok 45 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 47 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 48 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 49 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 50 - auditTrail set in new()
ok 51 - setAuditTrail returns correct value
ok 52 - getAuditTrail fetches correct value
ok 53 - addAuditTrail returns number of items in list
ok 54 - addAuditTrail adds correct value
ok 55 - setAuditTrail throws exception with non-array argument
ok 56 - setAuditTrail throws exception with bad argument array
ok 57 - addAuditTrail throws exception with no arguments
ok 58 - addAuditTrail throws exception with bad array
ok 59 - setAuditTrail accepts empty array ref
ok 60 - getAuditTrail throws exception with argument
ok 61 - setAuditTrail throws exception with no argument
ok 62 - setAuditTrail throws exception with too many argument
ok 63 - setAuditTrail accepts undef
ok 64 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 66 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 67 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 68 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 69 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 70 - setSecurity returns value
ok 71 - getSecurity fetches correct value
ok 72 - setSecurity throws exception with bad argument
ok 73 - getSecurity throws exception with argument
ok 74 - setSecurity throws exception with no argument
ok 75 - setSecurity throws exception with too many argument
ok 76 - setSecurity accepts undef
ok 77 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 79 - security->other() is a valid Bio::MAGE::Association::End
ok 80 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 81 - security->self() is a valid Bio::MAGE::Association::End
ok 82 - propertySets set in new()
ok 83 - setPropertySets returns correct value
ok 84 - getPropertySets fetches correct value
ok 85 - addPropertySets returns number of items in list
ok 86 - addPropertySets adds correct value
ok 87 - setPropertySets throws exception with non-array argument
ok 88 - setPropertySets throws exception with bad argument array
ok 89 - addPropertySets throws exception with no arguments
ok 90 - addPropertySets throws exception with bad array
ok 91 - setPropertySets accepts empty array ref
ok 92 - getPropertySets throws exception with argument
ok 93 - setPropertySets throws exception with no argument
ok 94 - setPropertySets throws exception with too many argument
ok 95 - setPropertySets accepts undef
ok 96 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 98 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 99 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 100 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 101 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::BioAssayData::QuantitationTypeDimension'
ok 102 - setQuantitationDimension returns value
ok 103 - getQuantitationDimension fetches correct value
ok 104 - setQuantitationDimension throws exception with bad argument
ok 105 - getQuantitationDimension throws exception with argument
ok 106 - setQuantitationDimension throws exception with no argument
ok 107 - setQuantitationDimension throws exception with too many argument
ok 108 - setQuantitationDimension accepts undef
ok 109 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 111 - quantitationDimension->other() is a valid Bio::MAGE::Association::End
ok 112 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 113 - quantitationDimension->self() is a valid Bio::MAGE::Association::End
ok 114 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable'
ok 115 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeContents' isa 'Bio::MAGE::Describable'
ok
t/NodeValue.t ....................
1..76
ok 1 - use Bio::MAGE::HigherLevelAnalysis::NodeValue;
ok 2 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeValue' isa 'Bio::MAGE::HigherLevelAnalysis::NodeValue'
ok 3 - package
ok 4 - class_name
ok 5 - value new
ok 6 - value getter/setter
ok 7 - value getter throws exception with argument
ok 8 - value setter throws exception with no argument
ok 9 - value setter throws exception with too many argument
ok 10 - value setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 18 - setDataType returns value
ok 19 - getDataType fetches correct value
ok 20 - setDataType throws exception with bad argument
ok 21 - getDataType throws exception with argument
ok 22 - setDataType throws exception with no argument
ok 23 - setDataType throws exception with too many argument
ok 24 - setDataType accepts undef
ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 27 - dataType->other() is a valid Bio::MAGE::Association::End
ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 29 - dataType->self() is a valid Bio::MAGE::Association::End
ok 30 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 31 - setScale returns value
ok 32 - getScale fetches correct value
ok 33 - setScale throws exception with bad argument
ok 34 - getScale throws exception with argument
ok 35 - setScale throws exception with no argument
ok 36 - setScale throws exception with too many argument
ok 37 - setScale accepts undef
ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 40 - scale->other() is a valid Bio::MAGE::Association::End
ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 42 - scale->self() is a valid Bio::MAGE::Association::End
ok 43 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 44 - setType returns value
ok 45 - getType fetches correct value
ok 46 - setType throws exception with bad argument
ok 47 - getType throws exception with argument
ok 48 - setType throws exception with no argument
ok 49 - setType throws exception with too many argument
ok 50 - setType accepts undef
ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 53 - type->other() is a valid Bio::MAGE::Association::End
ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 55 - type->self() is a valid Bio::MAGE::Association::End
ok 56 - propertySets set in new()
ok 57 - setPropertySets returns correct value
ok 58 - getPropertySets fetches correct value
ok 59 - addPropertySets returns number of items in list
ok 60 - addPropertySets adds correct value
ok 61 - setPropertySets throws exception with non-array argument
ok 62 - setPropertySets throws exception with bad argument array
ok 63 - addPropertySets throws exception with no arguments
ok 64 - addPropertySets throws exception with bad array
ok 65 - setPropertySets accepts empty array ref
ok 66 - getPropertySets throws exception with argument
ok 67 - setPropertySets throws exception with no argument
ok 68 - setPropertySets throws exception with too many argument
ok 69 - setPropertySets accepts undef
ok 70 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 72 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 73 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 74 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 75 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable'
ok 76 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeValue' isa 'Bio::MAGE::Extendable'
ok
t/OntologyEntry.t ................
1..75
ok 1 - use Bio::MAGE::Description::OntologyEntry;
ok 2 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 3 - package
ok 4 - class_name
ok 5 - value new
ok 6 - value getter/setter
ok 7 - value getter throws exception with argument
ok 8 - value setter throws exception with no argument
ok 9 - value setter throws exception with too many argument
ok 10 - value setter accepts undef
ok 11 - category new
ok 12 - category getter/setter
ok 13 - category getter throws exception with argument
ok 14 - category setter throws exception with no argument
ok 15 - category setter throws exception with too many argument
ok 16 - category setter accepts undef
ok 17 - description new
ok 18 - description getter/setter
ok 19 - description getter throws exception with argument
ok 20 - description setter throws exception with no argument
ok 21 - description setter throws exception with too many argument
ok 22 - description setter accepts undef
ok 23 - associations set in new()
ok 24 - setAssociations returns correct value
ok 25 - getAssociations fetches correct value
ok 26 - addAssociations returns number of items in list
ok 27 - addAssociations adds correct value
ok 28 - setAssociations throws exception with non-array argument
ok 29 - setAssociations throws exception with bad argument array
ok 30 - addAssociations throws exception with no arguments
ok 31 - addAssociations throws exception with bad array
ok 32 - setAssociations accepts empty array ref
ok 33 - getAssociations throws exception with argument
ok 34 - setAssociations throws exception with no argument
ok 35 - setAssociations throws exception with too many argument
ok 36 - setAssociations accepts undef
ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 39 - associations->other() is a valid Bio::MAGE::Association::End
ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 41 - associations->self() is a valid Bio::MAGE::Association::End
ok 42 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Description::DatabaseEntry'
ok 43 - setOntologyReference returns value
ok 44 - getOntologyReference fetches correct value
ok 45 - setOntologyReference throws exception with bad argument
ok 46 - getOntologyReference throws exception with argument
ok 47 - setOntologyReference throws exception with no argument
ok 48 - setOntologyReference throws exception with too many argument
ok 49 - setOntologyReference accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - ontologyReference->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - ontologyReference->self() is a valid Bio::MAGE::Association::End
ok 55 - propertySets set in new()
ok 56 - setPropertySets returns correct value
ok 57 - getPropertySets fetches correct value
ok 58 - addPropertySets returns number of items in list
ok 59 - addPropertySets adds correct value
ok 60 - setPropertySets throws exception with non-array argument
ok 61 - setPropertySets throws exception with bad argument array
ok 62 - addPropertySets throws exception with no arguments
ok 63 - addPropertySets throws exception with bad array
ok 64 - setPropertySets accepts empty array ref
ok 65 - getPropertySets throws exception with argument
ok 66 - setPropertySets throws exception with no argument
ok 67 - setPropertySets throws exception with too many argument
ok 68 - setPropertySets accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 74 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable'
ok 75 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Extendable'
ok
t/Organization.t .................
1..156
ok 1 - use Bio::MAGE::AuditAndSecurity::Organization;
ok 2 - An object of class 'Bio::MAGE::AuditAndSecurity::Organization' isa 'Bio::MAGE::AuditAndSecurity::Organization'
ok 3 - package
ok 4 - class_name
ok 5 - email new
ok 6 - email getter/setter
ok 7 - email getter throws exception with argument
ok 8 - email setter throws exception with no argument
ok 9 - email setter throws exception with too many argument
ok 10 - email setter accepts undef
ok 11 - identifier new
ok 12 - identifier getter/setter
ok 13 - identifier getter throws exception with argument
ok 14 - identifier setter throws exception with no argument
ok 15 - identifier setter throws exception with too many argument
ok 16 - identifier setter accepts undef
ok 17 - URI new
ok 18 - URI getter/setter
ok 19 - URI getter throws exception with argument
ok 20 - URI setter throws exception with no argument
ok 21 - URI setter throws exception with too many argument
ok 22 - URI setter accepts undef
ok 23 - fax new
ok 24 - fax getter/setter
ok 25 - fax getter throws exception with argument
ok 26 - fax setter throws exception with no argument
ok 27 - fax setter throws exception with too many argument
ok 28 - fax setter accepts undef
ok 29 - tollFreePhone new
ok 30 - tollFreePhone getter/setter
ok 31 - tollFreePhone getter throws exception with argument
ok 32 - tollFreePhone setter throws exception with no argument
ok 33 - tollFreePhone setter throws exception with too many argument
ok 34 - tollFreePhone setter accepts undef
ok 35 - name new
ok 36 - name getter/setter
ok 37 - name getter throws exception with argument
ok 38 - name setter throws exception with no argument
ok 39 - name setter throws exception with too many argument
ok 40 - name setter accepts undef
ok 41 - address new
ok 42 - address getter/setter
ok 43 - address getter throws exception with argument
ok 44 - address setter throws exception with no argument
ok 45 - address setter throws exception with too many argument
ok 46 - address setter accepts undef
ok 47 - phone new
ok 48 - phone getter/setter
ok 49 - phone getter throws exception with argument
ok 50 - phone setter throws exception with no argument
ok 51 - phone setter throws exception with too many argument
ok 52 - phone setter accepts undef
ok 53 - roles set in new()
ok 54 - setRoles returns correct value
ok 55 - getRoles fetches correct value
ok 56 - addRoles returns number of items in list
ok 57 - addRoles adds correct value
ok 58 - setRoles throws exception with non-array argument
ok 59 - setRoles throws exception with bad argument array
ok 60 - addRoles throws exception with no arguments
ok 61 - addRoles throws exception with bad array
ok 62 - setRoles accepts empty array ref
ok 63 - getRoles throws exception with argument
ok 64 - setRoles throws exception with no argument
ok 65 - setRoles throws exception with too many argument
ok 66 - setRoles accepts undef
ok 67 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 68 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 69 - roles->other() is a valid Bio::MAGE::Association::End
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - roles->self() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::AuditAndSecurity::Organization' isa 'Bio::MAGE::AuditAndSecurity::Organization'
ok 73 - setParent returns value
ok 74 - getParent fetches correct value
ok 75 - setParent throws exception with bad argument
ok 76 - getParent throws exception with argument
ok 77 - setParent throws exception with no argument
ok 78 - setParent throws exception with too many argument
ok 79 - setParent accepts undef
ok 80 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 81 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 82 - parent->other() is a valid Bio::MAGE::Association::End
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - parent->self() is a valid Bio::MAGE::Association::End
ok 85 - descriptions set in new()
ok 86 - setDescriptions returns correct value
ok 87 - getDescriptions fetches correct value
ok 88 - addDescriptions returns number of items in list
ok 89 - addDescriptions adds correct value
ok 90 - setDescriptions throws exception with non-array argument
ok 91 - setDescriptions throws exception with bad argument array
ok 92 - addDescriptions throws exception with no arguments
ok 93 - addDescriptions throws exception with bad array
ok 94 - setDescriptions accepts empty array ref
ok 95 - getDescriptions throws exception with argument
ok 96 - setDescriptions throws exception with no argument
ok 97 - setDescriptions throws exception with too many argument
ok 98 - setDescriptions accepts undef
ok 99 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 100 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 101 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 104 - auditTrail set in new()
ok 105 - setAuditTrail returns correct value
ok 106 - getAuditTrail fetches correct value
ok 107 - addAuditTrail returns number of items in list
ok 108 - addAuditTrail adds correct value
ok 109 - setAuditTrail throws exception with non-array argument
ok 110 - setAuditTrail throws exception with bad argument array
ok 111 - addAuditTrail throws exception with no arguments
ok 112 - addAuditTrail throws exception with bad array
ok 113 - setAuditTrail accepts empty array ref
ok 114 - getAuditTrail throws exception with argument
ok 115 - setAuditTrail throws exception with no argument
ok 116 - setAuditTrail throws exception with too many argument
ok 117 - setAuditTrail accepts undef
ok 118 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 119 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 120 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 122 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 123 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 124 - setSecurity returns value
ok 125 - getSecurity fetches correct value
ok 126 - setSecurity throws exception with bad argument
ok 127 - getSecurity throws exception with argument
ok 128 - setSecurity throws exception with no argument
ok 129 - setSecurity throws exception with too many argument
ok 130 - setSecurity accepts undef
ok 131 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 132 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 133 - security->other() is a valid Bio::MAGE::Association::End
ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 135 - security->self() is a valid Bio::MAGE::Association::End
ok 136 - propertySets set in new()
ok 137 - setPropertySets returns correct value
ok 138 - getPropertySets fetches correct value
ok 139 - addPropertySets returns number of items in list
ok 140 - addPropertySets adds correct value
ok 141 - setPropertySets throws exception with non-array argument
ok 142 - setPropertySets throws exception with bad argument array
ok 143 - addPropertySets throws exception with no arguments
ok 144 - addPropertySets throws exception with bad array
ok 145 - setPropertySets accepts empty array ref
ok 146 - getPropertySets throws exception with argument
ok 147 - setPropertySets throws exception with no argument
ok 148 - setPropertySets throws exception with too many argument
ok 149 - setPropertySets accepts undef
ok 150 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 151 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 152 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 154 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 155 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::AuditAndSecurity::Contact'
ok 156 - An object of class 'Bio::MAGE::AuditAndSecurity::Organization' isa 'Bio::MAGE::AuditAndSecurity::Contact'
ok
t/Parameter.t ....................
1..114
ok 1 - use Bio::MAGE::Protocol::Parameter;
ok 2 - An object of class 'Bio::MAGE::Protocol::Parameter' isa 'Bio::MAGE::Protocol::Parameter'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 18 - setDataType returns value
ok 19 - getDataType fetches correct value
ok 20 - setDataType throws exception with bad argument
ok 21 - getDataType throws exception with argument
ok 22 - setDataType throws exception with no argument
ok 23 - setDataType throws exception with too many argument
ok 24 - setDataType accepts undef
ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 27 - dataType->other() is a valid Bio::MAGE::Association::End
ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 29 - dataType->self() is a valid Bio::MAGE::Association::End
ok 30 - descriptions set in new()
ok 31 - setDescriptions returns correct value
ok 32 - getDescriptions fetches correct value
ok 33 - addDescriptions returns number of items in list
ok 34 - addDescriptions adds correct value
ok 35 - setDescriptions throws exception with non-array argument
ok 36 - setDescriptions throws exception with bad argument array
ok 37 - addDescriptions throws exception with no arguments
ok 38 - addDescriptions throws exception with bad array
ok 39 - setDescriptions accepts empty array ref
ok 40 - getDescriptions throws exception with argument
ok 41 - setDescriptions throws exception with no argument
ok 42 - setDescriptions throws exception with too many argument
ok 43 - setDescriptions accepts undef
ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 46 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 48 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 49 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 50 - setSecurity returns value
ok 51 - getSecurity fetches correct value
ok 52 - setSecurity throws exception with bad argument
ok 53 - getSecurity throws exception with argument
ok 54 - setSecurity throws exception with no argument
ok 55 - setSecurity throws exception with too many argument
ok 56 - setSecurity accepts undef
ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 59 - security->other() is a valid Bio::MAGE::Association::End
ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 61 - security->self() is a valid Bio::MAGE::Association::End
ok 62 - auditTrail set in new()
ok 63 - setAuditTrail returns correct value
ok 64 - getAuditTrail fetches correct value
ok 65 - addAuditTrail returns number of items in list
ok 66 - addAuditTrail adds correct value
ok 67 - setAuditTrail throws exception with non-array argument
ok 68 - setAuditTrail throws exception with bad argument array
ok 69 - addAuditTrail throws exception with no arguments
ok 70 - addAuditTrail throws exception with bad array
ok 71 - setAuditTrail accepts empty array ref
ok 72 - getAuditTrail throws exception with argument
ok 73 - setAuditTrail throws exception with no argument
ok 74 - setAuditTrail throws exception with too many argument
ok 75 - setAuditTrail accepts undef
ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 78 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 80 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 81 - propertySets set in new()
ok 82 - setPropertySets returns correct value
ok 83 - getPropertySets fetches correct value
ok 84 - addPropertySets returns number of items in list
ok 85 - addPropertySets adds correct value
ok 86 - setPropertySets throws exception with non-array argument
ok 87 - setPropertySets throws exception with bad argument array
ok 88 - addPropertySets throws exception with no arguments
ok 89 - addPropertySets throws exception with bad array
ok 90 - setPropertySets accepts empty array ref
ok 91 - getPropertySets throws exception with argument
ok 92 - setPropertySets throws exception with no argument
ok 93 - setPropertySets throws exception with too many argument
ok 94 - setPropertySets accepts undef
ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 97 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 99 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 100 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement'
ok 101 - setDefaultValue returns value
ok 102 - getDefaultValue fetches correct value
ok 103 - setDefaultValue throws exception with bad argument
ok 104 - getDefaultValue throws exception with argument
ok 105 - setDefaultValue throws exception with no argument
ok 106 - setDefaultValue throws exception with too many argument
ok 107 - setDefaultValue accepts undef
ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 110 - defaultValue->other() is a valid Bio::MAGE::Association::End
ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 112 - defaultValue->self() is a valid Bio::MAGE::Association::End
ok 113 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 114 - An object of class 'Bio::MAGE::Protocol::Parameter' isa 'Bio::MAGE::Identifiable'
ok
t/Parameterizable.t ..............
1..119
ok 1 - use Bio::MAGE::Protocol::Parameterizable;
ok 2 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Protocol::Parameterizable'
ok 3 - package
ok 4 - class_name
ok 5 - URI new
ok 6 - URI getter/setter
ok 7 - URI getter throws exception with argument
ok 8 - URI setter throws exception with no argument
ok 9 - URI setter throws exception with too many argument
ok 10 - URI setter accepts undef
ok 11 - identifier new
ok 12 - identifier getter/setter
ok 13 - identifier getter throws exception with argument
ok 14 - identifier setter throws exception with no argument
ok 15 - identifier setter throws exception with too many argument
ok 16 - identifier setter accepts undef
ok 17 - name new
ok 18 - name getter/setter
ok 19 - name getter throws exception with argument
ok 20 - name setter throws exception with no argument
ok 21 - name setter throws exception with too many argument
ok 22 - name setter accepts undef
ok 23 - parameterTypes set in new()
ok 24 - setParameterTypes returns correct value
ok 25 - getParameterTypes fetches correct value
ok 26 - addParameterTypes returns number of items in list
ok 27 - addParameterTypes adds correct value
ok 28 - setParameterTypes throws exception with non-array argument
ok 29 - setParameterTypes throws exception with bad argument array
ok 30 - addParameterTypes throws exception with no arguments
ok 31 - addParameterTypes throws exception with bad array
ok 32 - setParameterTypes accepts empty array ref
ok 33 - getParameterTypes throws exception with argument
ok 34 - setParameterTypes throws exception with no argument
ok 35 - setParameterTypes throws exception with too many argument
ok 36 - setParameterTypes accepts undef
ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 39 - parameterTypes->other() is a valid Bio::MAGE::Association::End
ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 41 - parameterTypes->self() is a valid Bio::MAGE::Association::End
ok 42 - descriptions set in new()
ok 43 - setDescriptions returns correct value
ok 44 - getDescriptions fetches correct value
ok 45 - addDescriptions returns number of items in list
ok 46 - addDescriptions adds correct value
ok 47 - setDescriptions throws exception with non-array argument
ok 48 - setDescriptions throws exception with bad argument array
ok 49 - addDescriptions throws exception with no arguments
ok 50 - addDescriptions throws exception with bad array
ok 51 - setDescriptions accepts empty array ref
ok 52 - getDescriptions throws exception with argument
ok 53 - setDescriptions throws exception with no argument
ok 54 - setDescriptions throws exception with too many argument
ok 55 - setDescriptions accepts undef
ok 56 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 57 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 58 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 59 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 60 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 61 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 62 - setSecurity returns value
ok 63 - getSecurity fetches correct value
ok 64 - setSecurity throws exception with bad argument
ok 65 - getSecurity throws exception with argument
ok 66 - setSecurity throws exception with no argument
ok 67 - setSecurity throws exception with too many argument
ok 68 - setSecurity accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - security->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - security->self() is a valid Bio::MAGE::Association::End
ok 74 - auditTrail set in new()
ok 75 - setAuditTrail returns correct value
ok 76 - getAuditTrail fetches correct value
ok 77 - addAuditTrail returns number of items in list
ok 78 - addAuditTrail adds correct value
ok 79 - setAuditTrail throws exception with non-array argument
ok 80 - setAuditTrail throws exception with bad argument array
ok 81 - addAuditTrail throws exception with no arguments
ok 82 - addAuditTrail throws exception with bad array
ok 83 - setAuditTrail accepts empty array ref
ok 84 - getAuditTrail throws exception with argument
ok 85 - setAuditTrail throws exception with no argument
ok 86 - setAuditTrail throws exception with too many argument
ok 87 - setAuditTrail accepts undef
ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 90 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 92 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 93 - propertySets set in new()
ok 94 - setPropertySets returns correct value
ok 95 - getPropertySets fetches correct value
ok 96 - addPropertySets returns number of items in list
ok 97 - addPropertySets adds correct value
ok 98 - setPropertySets throws exception with non-array argument
ok 99 - setPropertySets throws exception with bad argument array
ok 100 - addPropertySets throws exception with no arguments
ok 101 - addPropertySets throws exception with bad array
ok 102 - setPropertySets accepts empty array ref
ok 103 - getPropertySets throws exception with argument
ok 104 - setPropertySets throws exception with no argument
ok 105 - setPropertySets throws exception with too many argument
ok 106 - setPropertySets accepts undef
ok 107 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 108 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 109 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 111 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 112 - An object of class 'Bio::MAGE::Protocol::Protocol' isa 'Bio::MAGE::Protocol::Protocol'
ok 113 - An object of class 'Bio::MAGE::Protocol::Protocol' isa 'Bio::MAGE::Protocol::Parameterizable'
ok 114 - An object of class 'Bio::MAGE::Protocol::Software' isa 'Bio::MAGE::Protocol::Software'
ok 115 - An object of class 'Bio::MAGE::Protocol::Software' isa 'Bio::MAGE::Protocol::Parameterizable'
ok 116 - An object of class 'Bio::MAGE::Protocol::Hardware' isa 'Bio::MAGE::Protocol::Hardware'
ok 117 - An object of class 'Bio::MAGE::Protocol::Hardware' isa 'Bio::MAGE::Protocol::Parameterizable'
ok 118 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 119 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Identifiable'
ok
t/ParameterizableApplication.t ...
1..101
ok 1 - use Bio::MAGE::Protocol::ParameterizableApplication;
ok 2 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication'
ok 3 - package
ok 4 - class_name
ok 5 - descriptions set in new()
ok 6 - setDescriptions returns correct value
ok 7 - getDescriptions fetches correct value
ok 8 - addDescriptions returns number of items in list
ok 9 - addDescriptions adds correct value
ok 10 - setDescriptions throws exception with non-array argument
ok 11 - setDescriptions throws exception with bad argument array
ok 12 - addDescriptions throws exception with no arguments
ok 13 - addDescriptions throws exception with bad array
ok 14 - setDescriptions accepts empty array ref
ok 15 - getDescriptions throws exception with argument
ok 16 - setDescriptions throws exception with no argument
ok 17 - setDescriptions throws exception with too many argument
ok 18 - setDescriptions accepts undef
ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 21 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 23 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 24 - auditTrail set in new()
ok 25 - setAuditTrail returns correct value
ok 26 - getAuditTrail fetches correct value
ok 27 - addAuditTrail returns number of items in list
ok 28 - addAuditTrail adds correct value
ok 29 - setAuditTrail throws exception with non-array argument
ok 30 - setAuditTrail throws exception with bad argument array
ok 31 - addAuditTrail throws exception with no arguments
ok 32 - addAuditTrail throws exception with bad array
ok 33 - setAuditTrail accepts empty array ref
ok 34 - getAuditTrail throws exception with argument
ok 35 - setAuditTrail throws exception with no argument
ok 36 - setAuditTrail throws exception with too many argument
ok 37 - setAuditTrail accepts undef
ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 40 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 42 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 43 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 44 - setSecurity returns value
ok 45 - getSecurity fetches correct value
ok 46 - setSecurity throws exception with bad argument
ok 47 - getSecurity throws exception with argument
ok 48 - setSecurity throws exception with no argument
ok 49 - setSecurity throws exception with too many argument
ok 50 - setSecurity accepts undef
ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 53 - security->other() is a valid Bio::MAGE::Association::End
ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 55 - security->self() is a valid Bio::MAGE::Association::End
ok 56 - propertySets set in new()
ok 57 - setPropertySets returns correct value
ok 58 - getPropertySets fetches correct value
ok 59 - addPropertySets returns number of items in list
ok 60 - addPropertySets adds correct value
ok 61 - setPropertySets throws exception with non-array argument
ok 62 - setPropertySets throws exception with bad argument array
ok 63 - addPropertySets throws exception with no arguments
ok 64 - addPropertySets throws exception with bad array
ok 65 - setPropertySets accepts empty array ref
ok 66 - getPropertySets throws exception with argument
ok 67 - setPropertySets throws exception with no argument
ok 68 - setPropertySets throws exception with too many argument
ok 69 - setPropertySets accepts undef
ok 70 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 72 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 73 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 74 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 75 - parameterValues set in new()
ok 76 - setParameterValues returns correct value
ok 77 - getParameterValues fetches correct value
ok 78 - addParameterValues returns number of items in list
ok 79 - addParameterValues adds correct value
ok 80 - setParameterValues throws exception with non-array argument
ok 81 - setParameterValues throws exception with bad argument array
ok 82 - addParameterValues throws exception with no arguments
ok 83 - addParameterValues throws exception with bad array
ok 84 - setParameterValues accepts empty array ref
ok 85 - getParameterValues throws exception with argument
ok 86 - setParameterValues throws exception with no argument
ok 87 - setParameterValues throws exception with too many argument
ok 88 - setParameterValues accepts undef
ok 89 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 90 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 91 - parameterValues->other() is a valid Bio::MAGE::Association::End
ok 92 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 93 - parameterValues->self() is a valid Bio::MAGE::Association::End
ok 94 - An object of class 'Bio::MAGE::Protocol::ProtocolApplication' isa 'Bio::MAGE::Protocol::ProtocolApplication'
ok 95 - An object of class 'Bio::MAGE::Protocol::ProtocolApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication'
ok 96 - An object of class 'Bio::MAGE::Protocol::HardwareApplication' isa 'Bio::MAGE::Protocol::HardwareApplication'
ok 97 - An object of class 'Bio::MAGE::Protocol::HardwareApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication'
ok 98 - An object of class 'Bio::MAGE::Protocol::SoftwareApplication' isa 'Bio::MAGE::Protocol::SoftwareApplication'
ok 99 - An object of class 'Bio::MAGE::Protocol::SoftwareApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication'
ok 100 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable'
ok 101 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Describable'
ok
t/ParameterValue.t ...............
1..44
ok 1 - use Bio::MAGE::Protocol::ParameterValue;
ok 2 - An object of class 'Bio::MAGE::Protocol::ParameterValue' isa 'Bio::MAGE::Protocol::ParameterValue'
ok 3 - package
ok 4 - class_name
ok 5 - value new
ok 6 - value getter/setter
ok 7 - value getter throws exception with argument
ok 8 - value setter throws exception with no argument
ok 9 - value setter throws exception with too many argument
ok 10 - value setter accepts undef
ok 11 - An object of class 'Bio::MAGE::Protocol::Parameter' isa 'Bio::MAGE::Protocol::Parameter'
ok 12 - setParameterType returns value
ok 13 - getParameterType fetches correct value
ok 14 - setParameterType throws exception with bad argument
ok 15 - getParameterType throws exception with argument
ok 16 - setParameterType throws exception with no argument
ok 17 - setParameterType throws exception with too many argument
ok 18 - setParameterType accepts undef
ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 21 - parameterType->other() is a valid Bio::MAGE::Association::End
ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 23 - parameterType->self() is a valid Bio::MAGE::Association::End
ok 24 - propertySets set in new()
ok 25 - setPropertySets returns correct value
ok 26 - getPropertySets fetches correct value
ok 27 - addPropertySets returns number of items in list
ok 28 - addPropertySets adds correct value
ok 29 - setPropertySets throws exception with non-array argument
ok 30 - setPropertySets throws exception with bad argument array
ok 31 - addPropertySets throws exception with no arguments
ok 32 - addPropertySets throws exception with bad array
ok 33 - setPropertySets accepts empty array ref
ok 34 - getPropertySets throws exception with argument
ok 35 - setPropertySets throws exception with no argument
ok 36 - setPropertySets throws exception with too many argument
ok 37 - setPropertySets accepts undef
ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 40 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 42 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 43 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable'
ok 44 - An object of class 'Bio::MAGE::Protocol::ParameterValue' isa 'Bio::MAGE::Extendable'
ok
t/Person.t .......................
1..174
ok 1 - use Bio::MAGE::AuditAndSecurity::Person;
ok 2 - An object of class 'Bio::MAGE::AuditAndSecurity::Person' isa 'Bio::MAGE::AuditAndSecurity::Person'
ok 3 - package
ok 4 - class_name
ok 5 - firstName new
ok 6 - firstName getter/setter
ok 7 - firstName getter throws exception with argument
ok 8 - firstName setter throws exception with no argument
ok 9 - firstName setter throws exception with too many argument
ok 10 - firstName setter accepts undef
ok 11 - URI new
ok 12 - URI getter/setter
ok 13 - URI getter throws exception with argument
ok 14 - URI setter throws exception with no argument
ok 15 - URI setter throws exception with too many argument
ok 16 - URI setter accepts undef
ok 17 - name new
ok 18 - name getter/setter
ok 19 - name getter throws exception with argument
ok 20 - name setter throws exception with no argument
ok 21 - name setter throws exception with too many argument
ok 22 - name setter accepts undef
ok 23 - midInitials new
ok 24 - midInitials getter/setter
ok 25 - midInitials getter throws exception with argument
ok 26 - midInitials setter throws exception with no argument
ok 27 - midInitials setter throws exception with too many argument
ok 28 - midInitials setter accepts undef
ok 29 - phone new
ok 30 - phone getter/setter
ok 31 - phone getter throws exception with argument
ok 32 - phone setter throws exception with no argument
ok 33 - phone setter throws exception with too many argument
ok 34 - phone setter accepts undef
ok 35 - email new
ok 36 - email getter/setter
ok 37 - email getter throws exception with argument
ok 38 - email setter throws exception with no argument
ok 39 - email setter throws exception with too many argument
ok 40 - email setter accepts undef
ok 41 - identifier new
ok 42 - identifier getter/setter
ok 43 - identifier getter throws exception with argument
ok 44 - identifier setter throws exception with no argument
ok 45 - identifier setter throws exception with too many argument
ok 46 - identifier setter accepts undef
ok 47 - tollFreePhone new
ok 48 - tollFreePhone getter/setter
ok 49 - tollFreePhone getter throws exception with argument
ok 50 - tollFreePhone setter throws exception with no argument
ok 51 - tollFreePhone setter throws exception with too many argument
ok 52 - tollFreePhone setter accepts undef
ok 53 - fax new
ok 54 - fax getter/setter
ok 55 - fax getter throws exception with argument
ok 56 - fax setter throws exception with no argument
ok 57 - fax setter throws exception with too many argument
ok 58 - fax setter accepts undef
ok 59 - lastName new
ok 60 - lastName getter/setter
ok 61 - lastName getter throws exception with argument
ok 62 - lastName setter throws exception with no argument
ok 63 - lastName setter throws exception with too many argument
ok 64 - lastName setter accepts undef
ok 65 - address new
ok 66 - address getter/setter
ok 67 - address getter throws exception with argument
ok 68 - address setter throws exception with no argument
ok 69 - address setter throws exception with too many argument
ok 70 - address setter accepts undef
ok 71 - roles set in new()
ok 72 - setRoles returns correct value
ok 73 - getRoles fetches correct value
ok 74 - addRoles returns number of items in list
ok 75 - addRoles adds correct value
ok 76 - setRoles throws exception with non-array argument
ok 77 - setRoles throws exception with bad argument array
ok 78 - addRoles throws exception with no arguments
ok 79 - addRoles throws exception with bad array
ok 80 - setRoles accepts empty array ref
ok 81 - getRoles throws exception with argument
ok 82 - setRoles throws exception with no argument
ok 83 - setRoles throws exception with too many argument
ok 84 - setRoles accepts undef
ok 85 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 86 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 87 - roles->other() is a valid Bio::MAGE::Association::End
ok 88 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 89 - roles->self() is a valid Bio::MAGE::Association::End
ok 90 - descriptions set in new()
ok 91 - setDescriptions returns correct value
ok 92 - getDescriptions fetches correct value
ok 93 - addDescriptions returns number of items in list
ok 94 - addDescriptions adds correct value
ok 95 - setDescriptions throws exception with non-array argument
ok 96 - setDescriptions throws exception with bad argument array
ok 97 - addDescriptions throws exception with no arguments
ok 98 - addDescriptions throws exception with bad array
ok 99 - setDescriptions accepts empty array ref
ok 100 - getDescriptions throws exception with argument
ok 101 - setDescriptions throws exception with no argument
ok 102 - setDescriptions throws exception with too many argument
ok 103 - setDescriptions accepts undef
ok 104 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 105 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 106 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 107 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 108 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 109 - auditTrail set in new()
ok 110 - setAuditTrail returns correct value
ok 111 - getAuditTrail fetches correct value
ok 112 - addAuditTrail returns number of items in list
ok 113 - addAuditTrail adds correct value
ok 114 - setAuditTrail throws exception with non-array argument
ok 115 - setAuditTrail throws exception with bad argument array
ok 116 - addAuditTrail throws exception with no arguments
ok 117 - addAuditTrail throws exception with bad array
ok 118 - setAuditTrail accepts empty array ref
ok 119 - getAuditTrail throws exception with argument
ok 120 - setAuditTrail throws exception with no argument
ok 121 - setAuditTrail throws exception with too many argument
ok 122 - setAuditTrail accepts undef
ok 123 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 124 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 125 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 126 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 127 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 128 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 129 - setSecurity returns value
ok 130 - getSecurity fetches correct value
ok 131 - setSecurity throws exception with bad argument
ok 132 - getSecurity throws exception with argument
ok 133 - setSecurity throws exception with no argument
ok 134 - setSecurity throws exception with too many argument
ok 135 - setSecurity accepts undef
ok 136 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 137 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 138 - security->other() is a valid Bio::MAGE::Association::End
ok 139 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 140 - security->self() is a valid Bio::MAGE::Association::End
ok 141 - An object of class 'Bio::MAGE::AuditAndSecurity::Organization' isa 'Bio::MAGE::AuditAndSecurity::Organization'
ok 142 - setAffiliation returns value
ok 143 - getAffiliation fetches correct value
ok 144 - setAffiliation throws exception with bad argument
ok 145 - getAffiliation throws exception with argument
ok 146 - setAffiliation throws exception with no argument
ok 147 - setAffiliation throws exception with too many argument
ok 148 - setAffiliation accepts undef
ok 149 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 150 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 151 - affiliation->other() is a valid Bio::MAGE::Association::End
ok 152 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 153 - affiliation->self() is a valid Bio::MAGE::Association::End
ok 154 - propertySets set in new()
ok 155 - setPropertySets returns correct value
ok 156 - getPropertySets fetches correct value
ok 157 - addPropertySets returns number of items in list
ok 158 - addPropertySets adds correct value
ok 159 - setPropertySets throws exception with non-array argument
ok 160 - setPropertySets throws exception with bad argument array
ok 161 - addPropertySets throws exception with no arguments
ok 162 - addPropertySets throws exception with bad array
ok 163 - setPropertySets accepts empty array ref
ok 164 - getPropertySets throws exception with argument
ok 165 - setPropertySets throws exception with no argument
ok 166 - setPropertySets throws exception with too many argument
ok 167 - setPropertySets accepts undef
ok 168 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 169 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 170 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 171 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 172 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 173 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::AuditAndSecurity::Contact'
ok 174 - An object of class 'Bio::MAGE::AuditAndSecurity::Person' isa 'Bio::MAGE::AuditAndSecurity::Contact'
ok
t/PhysicalArrayDesign.t ..........
1..227
ok 1 - use Bio::MAGE::ArrayDesign::PhysicalArrayDesign;
ok 2 - An object of class 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign' isa 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - numberOfFeatures new
ok 12 - numberOfFeatures getter/setter
ok 13 - numberOfFeatures getter throws exception with argument
ok 14 - numberOfFeatures setter throws exception with no argument
ok 15 - numberOfFeatures setter throws exception with too many argument
ok 16 - numberOfFeatures setter accepts undef
ok 17 - version new
ok 18 - version getter/setter
ok 19 - version getter throws exception with argument
ok 20 - version setter throws exception with no argument
ok 21 - version setter throws exception with too many argument
ok 22 - version setter accepts undef
ok 23 - name new
ok 24 - name getter/setter
ok 25 - name getter throws exception with argument
ok 26 - name setter throws exception with no argument
ok 27 - name setter throws exception with too many argument
ok 28 - name setter accepts undef
ok 29 - auditTrail set in new()
ok 30 - setAuditTrail returns correct value
ok 31 - getAuditTrail fetches correct value
ok 32 - addAuditTrail returns number of items in list
ok 33 - addAuditTrail adds correct value
ok 34 - setAuditTrail throws exception with non-array argument
ok 35 - setAuditTrail throws exception with bad argument array
ok 36 - addAuditTrail throws exception with no arguments
ok 37 - addAuditTrail throws exception with bad array
ok 38 - setAuditTrail accepts empty array ref
ok 39 - getAuditTrail throws exception with argument
ok 40 - setAuditTrail throws exception with no argument
ok 41 - setAuditTrail throws exception with too many argument
ok 42 - setAuditTrail accepts undef
ok 43 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 45 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 47 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 48 - propertySets set in new()
ok 49 - setPropertySets returns correct value
ok 50 - getPropertySets fetches correct value
ok 51 - addPropertySets returns number of items in list
ok 52 - addPropertySets adds correct value
ok 53 - setPropertySets throws exception with non-array argument
ok 54 - setPropertySets throws exception with bad argument array
ok 55 - addPropertySets throws exception with no arguments
ok 56 - addPropertySets throws exception with bad array
ok 57 - setPropertySets accepts empty array ref
ok 58 - getPropertySets throws exception with argument
ok 59 - setPropertySets throws exception with no argument
ok 60 - setPropertySets throws exception with too many argument
ok 61 - setPropertySets accepts undef
ok 62 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 63 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 64 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 66 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 67 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 68 - setSurfaceType returns value
ok 69 - getSurfaceType fetches correct value
ok 70 - setSurfaceType throws exception with bad argument
ok 71 - getSurfaceType throws exception with argument
ok 72 - setSurfaceType throws exception with no argument
ok 73 - setSurfaceType throws exception with too many argument
ok 74 - setSurfaceType accepts undef
ok 75 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 76 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 77 - surfaceType->other() is a valid Bio::MAGE::Association::End
ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 79 - surfaceType->self() is a valid Bio::MAGE::Association::End
ok 80 - designProviders set in new()
ok 81 - setDesignProviders returns correct value
ok 82 - getDesignProviders fetches correct value
ok 83 - addDesignProviders returns number of items in list
ok 84 - addDesignProviders adds correct value
ok 85 - setDesignProviders throws exception with non-array argument
ok 86 - setDesignProviders throws exception with bad argument array
ok 87 - addDesignProviders throws exception with no arguments
ok 88 - addDesignProviders throws exception with bad array
ok 89 - setDesignProviders accepts empty array ref
ok 90 - getDesignProviders throws exception with argument
ok 91 - setDesignProviders throws exception with no argument
ok 92 - setDesignProviders throws exception with too many argument
ok 93 - setDesignProviders accepts undef
ok 94 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 95 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 96 - designProviders->other() is a valid Bio::MAGE::Association::End
ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 98 - designProviders->self() is a valid Bio::MAGE::Association::End
ok 99 - protocolApplications set in new()
ok 100 - setProtocolApplications returns correct value
ok 101 - getProtocolApplications fetches correct value
ok 102 - addProtocolApplications returns number of items in list
ok 103 - addProtocolApplications adds correct value
ok 104 - setProtocolApplications throws exception with non-array argument
ok 105 - setProtocolApplications throws exception with bad argument array
ok 106 - addProtocolApplications throws exception with no arguments
ok 107 - addProtocolApplications throws exception with bad array
ok 108 - setProtocolApplications accepts empty array ref
ok 109 - getProtocolApplications throws exception with argument
ok 110 - setProtocolApplications throws exception with no argument
ok 111 - setProtocolApplications throws exception with too many argument
ok 112 - setProtocolApplications accepts undef
ok 113 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 114 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 115 - protocolApplications->other() is a valid Bio::MAGE::Association::End
ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 117 - protocolApplications->self() is a valid Bio::MAGE::Association::End
ok 118 - reporterGroups set in new()
ok 119 - setReporterGroups returns correct value
ok 120 - getReporterGroups fetches correct value
ok 121 - addReporterGroups returns number of items in list
ok 122 - addReporterGroups adds correct value
ok 123 - setReporterGroups throws exception with non-array argument
ok 124 - setReporterGroups throws exception with bad argument array
ok 125 - addReporterGroups throws exception with no arguments
ok 126 - addReporterGroups throws exception with bad array
ok 127 - setReporterGroups accepts empty array ref
ok 128 - getReporterGroups throws exception with argument
ok 129 - setReporterGroups throws exception with no argument
ok 130 - setReporterGroups throws exception with too many argument
ok 131 - setReporterGroups accepts undef
ok 132 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 133 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 134 - reporterGroups->other() is a valid Bio::MAGE::Association::End
ok 135 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 136 - reporterGroups->self() is a valid Bio::MAGE::Association::End
ok 137 - zoneGroups set in new()
ok 138 - setZoneGroups returns correct value
ok 139 - getZoneGroups fetches correct value
ok 140 - addZoneGroups returns number of items in list
ok 141 - addZoneGroups adds correct value
ok 142 - setZoneGroups throws exception with non-array argument
ok 143 - setZoneGroups throws exception with bad argument array
ok 144 - addZoneGroups throws exception with no arguments
ok 145 - addZoneGroups throws exception with bad array
ok 146 - setZoneGroups accepts empty array ref
ok 147 - getZoneGroups throws exception with argument
ok 148 - setZoneGroups throws exception with no argument
ok 149 - setZoneGroups throws exception with too many argument
ok 150 - setZoneGroups accepts undef
ok 151 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 152 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 153 - zoneGroups->other() is a valid Bio::MAGE::Association::End
ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 155 - zoneGroups->self() is a valid Bio::MAGE::Association::End
ok 156 - featureGroups set in new()
ok 157 - setFeatureGroups returns correct value
ok 158 - getFeatureGroups fetches correct value
ok 159 - addFeatureGroups returns number of items in list
ok 160 - addFeatureGroups adds correct value
ok 161 - setFeatureGroups throws exception with non-array argument
ok 162 - setFeatureGroups throws exception with bad argument array
ok 163 - addFeatureGroups throws exception with no arguments
ok 164 - addFeatureGroups throws exception with bad array
ok 165 - setFeatureGroups accepts empty array ref
ok 166 - getFeatureGroups throws exception with argument
ok 167 - setFeatureGroups throws exception with no argument
ok 168 - setFeatureGroups throws exception with too many argument
ok 169 - setFeatureGroups accepts undef
ok 170 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 171 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 172 - featureGroups->other() is a valid Bio::MAGE::Association::End
ok 173 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 174 - featureGroups->self() is a valid Bio::MAGE::Association::End
ok 175 - descriptions set in new()
ok 176 - setDescriptions returns correct value
ok 177 - getDescriptions fetches correct value
ok 178 - addDescriptions returns number of items in list
ok 179 - addDescriptions adds correct value
ok 180 - setDescriptions throws exception with non-array argument
ok 181 - setDescriptions throws exception with bad argument array
ok 182 - addDescriptions throws exception with no arguments
ok 183 - addDescriptions throws exception with bad array
ok 184 - setDescriptions accepts empty array ref
ok 185 - getDescriptions throws exception with argument
ok 186 - setDescriptions throws exception with no argument
ok 187 - setDescriptions throws exception with too many argument
ok 188 - setDescriptions accepts undef
ok 189 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 190 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 191 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 192 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 193 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 194 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 195 - setSecurity returns value
ok 196 - getSecurity fetches correct value
ok 197 - setSecurity throws exception with bad argument
ok 198 - getSecurity throws exception with argument
ok 199 - setSecurity throws exception with no argument
ok 200 - setSecurity throws exception with too many argument
ok 201 - setSecurity accepts undef
ok 202 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 203 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 204 - security->other() is a valid Bio::MAGE::Association::End
ok 205 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 206 - security->self() is a valid Bio::MAGE::Association::End
ok 207 - compositeGroups set in new()
ok 208 - setCompositeGroups returns correct value
ok 209 - getCompositeGroups fetches correct value
ok 210 - addCompositeGroups returns number of items in list
ok 211 - addCompositeGroups adds correct value
ok 212 - setCompositeGroups throws exception with non-array argument
ok 213 - setCompositeGroups throws exception with bad argument array
ok 214 - addCompositeGroups throws exception with no arguments
ok 215 - addCompositeGroups throws exception with bad array
ok 216 - setCompositeGroups accepts empty array ref
ok 217 - getCompositeGroups throws exception with argument
ok 218 - setCompositeGroups throws exception with no argument
ok 219 - setCompositeGroups throws exception with too many argument
ok 220 - setCompositeGroups accepts undef
ok 221 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 222 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 223 - compositeGroups->other() is a valid Bio::MAGE::Association::End
ok 224 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 225 - compositeGroups->self() is a valid Bio::MAGE::Association::End
ok 226 - An object of class 'Bio::MAGE::ArrayDesign::ArrayDesign' isa 'Bio::MAGE::ArrayDesign::ArrayDesign'
ok 227 - An object of class 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign' isa 'Bio::MAGE::ArrayDesign::ArrayDesign'
ok
t/PhysicalBioAssay.t .............
1..177
ok 1 - use Bio::MAGE::BioAssay::PhysicalBioAssay;
ok 2 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - channels set in new()
ok 18 - setChannels returns correct value
ok 19 - getChannels fetches correct value
ok 20 - addChannels returns number of items in list
ok 21 - addChannels adds correct value
ok 22 - setChannels throws exception with non-array argument
ok 23 - setChannels throws exception with bad argument array
ok 24 - addChannels throws exception with no arguments
ok 25 - addChannels throws exception with bad array
ok 26 - setChannels accepts empty array ref
ok 27 - getChannels throws exception with argument
ok 28 - setChannels throws exception with no argument
ok 29 - setChannels throws exception with too many argument
ok 30 - setChannels accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - channels->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - channels->self() is a valid Bio::MAGE::Association::End
ok 36 - An object of class 'Bio::MAGE::BioAssay::BioAssayCreation' isa 'Bio::MAGE::BioAssay::BioAssayCreation'
ok 37 - setBioAssayCreation returns value
ok 38 - getBioAssayCreation fetches correct value
ok 39 - setBioAssayCreation throws exception with bad argument
ok 40 - getBioAssayCreation throws exception with argument
ok 41 - setBioAssayCreation throws exception with no argument
ok 42 - setBioAssayCreation throws exception with too many argument
ok 43 - setBioAssayCreation accepts undef
ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 46 - bioAssayCreation->other() is a valid Bio::MAGE::Association::End
ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 48 - bioAssayCreation->self() is a valid Bio::MAGE::Association::End
ok 49 - auditTrail set in new()
ok 50 - setAuditTrail returns correct value
ok 51 - getAuditTrail fetches correct value
ok 52 - addAuditTrail returns number of items in list
ok 53 - addAuditTrail adds correct value
ok 54 - setAuditTrail throws exception with non-array argument
ok 55 - setAuditTrail throws exception with bad argument array
ok 56 - addAuditTrail throws exception with no arguments
ok 57 - addAuditTrail throws exception with bad array
ok 58 - setAuditTrail accepts empty array ref
ok 59 - getAuditTrail throws exception with argument
ok 60 - setAuditTrail throws exception with no argument
ok 61 - setAuditTrail throws exception with too many argument
ok 62 - setAuditTrail accepts undef
ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 65 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 67 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 68 - propertySets set in new()
ok 69 - setPropertySets returns correct value
ok 70 - getPropertySets fetches correct value
ok 71 - addPropertySets returns number of items in list
ok 72 - addPropertySets adds correct value
ok 73 - setPropertySets throws exception with non-array argument
ok 74 - setPropertySets throws exception with bad argument array
ok 75 - addPropertySets throws exception with no arguments
ok 76 - addPropertySets throws exception with bad array
ok 77 - setPropertySets accepts empty array ref
ok 78 - getPropertySets throws exception with argument
ok 79 - setPropertySets throws exception with no argument
ok 80 - setPropertySets throws exception with too many argument
ok 81 - setPropertySets accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 87 - physicalBioAssayData set in new()
ok 88 - setPhysicalBioAssayData returns correct value
ok 89 - getPhysicalBioAssayData fetches correct value
ok 90 - addPhysicalBioAssayData returns number of items in list
ok 91 - addPhysicalBioAssayData adds correct value
ok 92 - setPhysicalBioAssayData throws exception with non-array argument
ok 93 - setPhysicalBioAssayData throws exception with bad argument array
ok 94 - addPhysicalBioAssayData throws exception with no arguments
ok 95 - addPhysicalBioAssayData throws exception with bad array
ok 96 - setPhysicalBioAssayData accepts empty array ref
ok 97 - getPhysicalBioAssayData throws exception with argument
ok 98 - setPhysicalBioAssayData throws exception with no argument
ok 99 - setPhysicalBioAssayData throws exception with too many argument
ok 100 - setPhysicalBioAssayData accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - physicalBioAssayData->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - physicalBioAssayData->self() is a valid Bio::MAGE::Association::End
ok 106 - bioAssayFactorValues set in new()
ok 107 - setBioAssayFactorValues returns correct value
ok 108 - getBioAssayFactorValues fetches correct value
ok 109 - addBioAssayFactorValues returns number of items in list
ok 110 - addBioAssayFactorValues adds correct value
ok 111 - setBioAssayFactorValues throws exception with non-array argument
ok 112 - setBioAssayFactorValues throws exception with bad argument array
ok 113 - addBioAssayFactorValues throws exception with no arguments
ok 114 - addBioAssayFactorValues throws exception with bad array
ok 115 - setBioAssayFactorValues accepts empty array ref
ok 116 - getBioAssayFactorValues throws exception with argument
ok 117 - setBioAssayFactorValues throws exception with no argument
ok 118 - setBioAssayFactorValues throws exception with too many argument
ok 119 - setBioAssayFactorValues accepts undef
ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 122 - bioAssayFactorValues->other() is a valid Bio::MAGE::Association::End
ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 124 - bioAssayFactorValues->self() is a valid Bio::MAGE::Association::End
ok 125 - bioAssayTreatments set in new()
ok 126 - setBioAssayTreatments returns correct value
ok 127 - getBioAssayTreatments fetches correct value
ok 128 - addBioAssayTreatments returns number of items in list
ok 129 - addBioAssayTreatments adds correct value
ok 130 - setBioAssayTreatments throws exception with non-array argument
ok 131 - setBioAssayTreatments throws exception with bad argument array
ok 132 - addBioAssayTreatments throws exception with no arguments
ok 133 - addBioAssayTreatments throws exception with bad array
ok 134 - setBioAssayTreatments accepts empty array ref
ok 135 - getBioAssayTreatments throws exception with argument
ok 136 - setBioAssayTreatments throws exception with no argument
ok 137 - setBioAssayTreatments throws exception with too many argument
ok 138 - setBioAssayTreatments accepts undef
ok 139 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 141 - bioAssayTreatments->other() is a valid Bio::MAGE::Association::End
ok 142 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 143 - bioAssayTreatments->self() is a valid Bio::MAGE::Association::End
ok 144 - descriptions set in new()
ok 145 - setDescriptions returns correct value
ok 146 - getDescriptions fetches correct value
ok 147 - addDescriptions returns number of items in list
ok 148 - addDescriptions adds correct value
ok 149 - setDescriptions throws exception with non-array argument
ok 150 - setDescriptions throws exception with bad argument array
ok 151 - addDescriptions throws exception with no arguments
ok 152 - addDescriptions throws exception with bad array
ok 153 - setDescriptions accepts empty array ref
ok 154 - getDescriptions throws exception with argument
ok 155 - setDescriptions throws exception with no argument
ok 156 - setDescriptions throws exception with too many argument
ok 157 - setDescriptions accepts undef
ok 158 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 159 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 160 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 161 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 162 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 163 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 164 - setSecurity returns value
ok 165 - getSecurity fetches correct value
ok 166 - setSecurity throws exception with bad argument
ok 167 - getSecurity throws exception with argument
ok 168 - setSecurity throws exception with no argument
ok 169 - setSecurity throws exception with too many argument
ok 170 - setSecurity accepts undef
ok 171 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 172 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 173 - security->other() is a valid Bio::MAGE::Association::End
ok 174 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 175 - security->self() is a valid Bio::MAGE::Association::End
ok 176 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::BioAssay::BioAssay'
ok 177 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::BioAssay'
ok
t/Position.t .....................
1..50
ok 1 - use Bio::MAGE::DesignElement::Position;
ok 2 - An object of class 'Bio::MAGE::DesignElement::Position' isa 'Bio::MAGE::DesignElement::Position'
ok 3 - package
ok 4 - class_name
ok 5 - y new
ok 6 - y getter/setter
ok 7 - y getter throws exception with argument
ok 8 - y setter throws exception with no argument
ok 9 - y setter throws exception with too many argument
ok 10 - y setter accepts undef
ok 11 - x new
ok 12 - x getter/setter
ok 13 - x getter throws exception with argument
ok 14 - x setter throws exception with no argument
ok 15 - x setter throws exception with too many argument
ok 16 - x setter accepts undef
ok 17 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit'
ok 18 - setDistanceUnit returns value
ok 19 - getDistanceUnit fetches correct value
ok 20 - setDistanceUnit throws exception with bad argument
ok 21 - getDistanceUnit throws exception with argument
ok 22 - setDistanceUnit throws exception with no argument
ok 23 - setDistanceUnit throws exception with too many argument
ok 24 - setDistanceUnit accepts undef
ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 27 - distanceUnit->other() is a valid Bio::MAGE::Association::End
ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 29 - distanceUnit->self() is a valid Bio::MAGE::Association::End
ok 30 - propertySets set in new()
ok 31 - setPropertySets returns correct value
ok 32 - getPropertySets fetches correct value
ok 33 - addPropertySets returns number of items in list
ok 34 - addPropertySets adds correct value
ok 35 - setPropertySets throws exception with non-array argument
ok 36 - setPropertySets throws exception with bad argument array
ok 37 - addPropertySets throws exception with no arguments
ok 38 - addPropertySets throws exception with bad array
ok 39 - setPropertySets accepts empty array ref
ok 40 - getPropertySets throws exception with argument
ok 41 - setPropertySets throws exception with no argument
ok 42 - setPropertySets throws exception with too many argument
ok 43 - setPropertySets accepts undef
ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 46 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 48 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 49 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable'
ok 50 - An object of class 'Bio::MAGE::DesignElement::Position' isa 'Bio::MAGE::Extendable'
ok
t/PositionDelta.t ................
1..50
ok 1 - use Bio::MAGE::Array::PositionDelta;
ok 2 - An object of class 'Bio::MAGE::Array::PositionDelta' isa 'Bio::MAGE::Array::PositionDelta'
ok 3 - package
ok 4 - class_name
ok 5 - deltaX new
ok 6 - deltaX getter/setter
ok 7 - deltaX getter throws exception with argument
ok 8 - deltaX setter throws exception with no argument
ok 9 - deltaX setter throws exception with too many argument
ok 10 - deltaX setter accepts undef
ok 11 - deltaY new
ok 12 - deltaY getter/setter
ok 13 - deltaY getter throws exception with argument
ok 14 - deltaY setter throws exception with no argument
ok 15 - deltaY setter throws exception with too many argument
ok 16 - deltaY setter accepts undef
ok 17 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit'
ok 18 - setDistanceUnit returns value
ok 19 - getDistanceUnit fetches correct value
ok 20 - setDistanceUnit throws exception with bad argument
ok 21 - getDistanceUnit throws exception with argument
ok 22 - setDistanceUnit throws exception with no argument
ok 23 - setDistanceUnit throws exception with too many argument
ok 24 - setDistanceUnit accepts undef
ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 27 - distanceUnit->other() is a valid Bio::MAGE::Association::End
ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 29 - distanceUnit->self() is a valid Bio::MAGE::Association::End
ok 30 - propertySets set in new()
ok 31 - setPropertySets returns correct value
ok 32 - getPropertySets fetches correct value
ok 33 - addPropertySets returns number of items in list
ok 34 - addPropertySets adds correct value
ok 35 - setPropertySets throws exception with non-array argument
ok 36 - setPropertySets throws exception with bad argument array
ok 37 - addPropertySets throws exception with no arguments
ok 38 - addPropertySets throws exception with bad array
ok 39 - setPropertySets accepts empty array ref
ok 40 - getPropertySets throws exception with argument
ok 41 - setPropertySets throws exception with no argument
ok 42 - setPropertySets throws exception with too many argument
ok 43 - setPropertySets accepts undef
ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 46 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 48 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 49 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable'
ok 50 - An object of class 'Bio::MAGE::Array::PositionDelta' isa 'Bio::MAGE::Extendable'
ok
t/PresentAbsent.t ................
1..171
ok 1 - use Bio::MAGE::QuantitationType::PresentAbsent;
ok 2 - An object of class 'Bio::MAGE::QuantitationType::PresentAbsent' isa 'Bio::MAGE::QuantitationType::PresentAbsent'
ok 3 - package
ok 4 - class_name
ok 5 - isBackground new
ok 6 - isBackground getter/setter
ok 7 - isBackground getter throws exception with argument
ok 8 - isBackground setter throws exception with no argument
ok 9 - isBackground setter throws exception with too many argument
ok 10 - isBackground setter accepts undef
ok 11 - identifier new
ok 12 - identifier getter/setter
ok 13 - identifier getter throws exception with argument
ok 14 - identifier setter throws exception with no argument
ok 15 - identifier setter throws exception with too many argument
ok 16 - identifier setter accepts undef
ok 17 - name new
ok 18 - name getter/setter
ok 19 - name getter throws exception with argument
ok 20 - name setter throws exception with no argument
ok 21 - name setter throws exception with too many argument
ok 22 - name setter accepts undef
ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 24 - setDataType returns value
ok 25 - getDataType fetches correct value
ok 26 - setDataType throws exception with bad argument
ok 27 - getDataType throws exception with argument
ok 28 - setDataType throws exception with no argument
ok 29 - setDataType throws exception with too many argument
ok 30 - setDataType accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - dataType->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - dataType->self() is a valid Bio::MAGE::Association::End
ok 36 - descriptions set in new()
ok 37 - setDescriptions returns correct value
ok 38 - getDescriptions fetches correct value
ok 39 - addDescriptions returns number of items in list
ok 40 - addDescriptions adds correct value
ok 41 - setDescriptions throws exception with non-array argument
ok 42 - setDescriptions throws exception with bad argument array
ok 43 - addDescriptions throws exception with no arguments
ok 44 - addDescriptions throws exception with bad array
ok 45 - setDescriptions accepts empty array ref
ok 46 - getDescriptions throws exception with argument
ok 47 - setDescriptions throws exception with no argument
ok 48 - setDescriptions throws exception with too many argument
ok 49 - setDescriptions accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 55 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 56 - setScale returns value
ok 57 - getScale fetches correct value
ok 58 - setScale throws exception with bad argument
ok 59 - getScale throws exception with argument
ok 60 - setScale throws exception with no argument
ok 61 - setScale throws exception with too many argument
ok 62 - setScale accepts undef
ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 65 - scale->other() is a valid Bio::MAGE::Association::End
ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 67 - scale->self() is a valid Bio::MAGE::Association::End
ok 68 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 69 - setSecurity returns value
ok 70 - getSecurity fetches correct value
ok 71 - setSecurity throws exception with bad argument
ok 72 - getSecurity throws exception with argument
ok 73 - setSecurity throws exception with no argument
ok 74 - setSecurity throws exception with too many argument
ok 75 - setSecurity accepts undef
ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 78 - security->other() is a valid Bio::MAGE::Association::End
ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 80 - security->self() is a valid Bio::MAGE::Association::End
ok 81 - auditTrail set in new()
ok 82 - setAuditTrail returns correct value
ok 83 - getAuditTrail fetches correct value
ok 84 - addAuditTrail returns number of items in list
ok 85 - addAuditTrail adds correct value
ok 86 - setAuditTrail throws exception with non-array argument
ok 87 - setAuditTrail throws exception with bad argument array
ok 88 - addAuditTrail throws exception with no arguments
ok 89 - addAuditTrail throws exception with bad array
ok 90 - setAuditTrail accepts empty array ref
ok 91 - getAuditTrail throws exception with argument
ok 92 - setAuditTrail throws exception with no argument
ok 93 - setAuditTrail throws exception with too many argument
ok 94 - setAuditTrail accepts undef
ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 100 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel'
ok 101 - setChannel returns value
ok 102 - getChannel fetches correct value
ok 103 - setChannel throws exception with bad argument
ok 104 - getChannel throws exception with argument
ok 105 - setChannel throws exception with no argument
ok 106 - setChannel throws exception with too many argument
ok 107 - setChannel accepts undef
ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 110 - channel->other() is a valid Bio::MAGE::Association::End
ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 112 - channel->self() is a valid Bio::MAGE::Association::End
ok 113 - propertySets set in new()
ok 114 - setPropertySets returns correct value
ok 115 - getPropertySets fetches correct value
ok 116 - addPropertySets returns number of items in list
ok 117 - addPropertySets adds correct value
ok 118 - setPropertySets throws exception with non-array argument
ok 119 - setPropertySets throws exception with bad argument array
ok 120 - addPropertySets throws exception with no arguments
ok 121 - addPropertySets throws exception with bad array
ok 122 - setPropertySets accepts empty array ref
ok 123 - getPropertySets throws exception with argument
ok 124 - setPropertySets throws exception with no argument
ok 125 - setPropertySets throws exception with too many argument
ok 126 - setPropertySets accepts undef
ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 132 - confidenceIndicators set in new()
ok 133 - setConfidenceIndicators returns correct value
ok 134 - getConfidenceIndicators fetches correct value
ok 135 - addConfidenceIndicators returns number of items in list
ok 136 - addConfidenceIndicators adds correct value
ok 137 - setConfidenceIndicators throws exception with non-array argument
ok 138 - setConfidenceIndicators throws exception with bad argument array
ok 139 - addConfidenceIndicators throws exception with no arguments
ok 140 - addConfidenceIndicators throws exception with bad array
ok 141 - setConfidenceIndicators accepts empty array ref
ok 142 - getConfidenceIndicators throws exception with argument
ok 143 - setConfidenceIndicators throws exception with no argument
ok 144 - setConfidenceIndicators throws exception with too many argument
ok 145 - setConfidenceIndicators accepts undef
ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End
ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End
ok 151 - quantitationTypeMaps set in new()
ok 152 - setQuantitationTypeMaps returns correct value
ok 153 - getQuantitationTypeMaps fetches correct value
ok 154 - addQuantitationTypeMaps returns number of items in list
ok 155 - addQuantitationTypeMaps adds correct value
ok 156 - setQuantitationTypeMaps throws exception with non-array argument
ok 157 - setQuantitationTypeMaps throws exception with bad argument array
ok 158 - addQuantitationTypeMaps throws exception with no arguments
ok 159 - addQuantitationTypeMaps throws exception with bad array
ok 160 - setQuantitationTypeMaps accepts empty array ref
ok 161 - getQuantitationTypeMaps throws exception with argument
ok 162 - setQuantitationTypeMaps throws exception with no argument
ok 163 - setQuantitationTypeMaps throws exception with too many argument
ok 164 - setQuantitationTypeMaps accepts undef
ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End
ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End
ok 170 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType'
ok 171 - An object of class 'Bio::MAGE::QuantitationType::PresentAbsent' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType'
ok
t/Protocol.t .....................
1..176
ok 1 - use Bio::MAGE::Protocol::Protocol;
ok 2 - An object of class 'Bio::MAGE::Protocol::Protocol' isa 'Bio::MAGE::Protocol::Protocol'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - URI new
ok 12 - URI getter/setter
ok 13 - URI getter throws exception with argument
ok 14 - URI setter throws exception with no argument
ok 15 - URI setter throws exception with too many argument
ok 16 - URI setter accepts undef
ok 17 - text new
ok 18 - text getter/setter
ok 19 - text getter throws exception with argument
ok 20 - text setter throws exception with no argument
ok 21 - text setter throws exception with too many argument
ok 22 - text setter accepts undef
ok 23 - name new
ok 24 - name getter/setter
ok 25 - name getter throws exception with argument
ok 26 - name setter throws exception with no argument
ok 27 - name setter throws exception with too many argument
ok 28 - name setter accepts undef
ok 29 - title new
ok 30 - title getter/setter
ok 31 - title getter throws exception with argument
ok 32 - title setter throws exception with no argument
ok 33 - title setter throws exception with too many argument
ok 34 - title setter accepts undef
ok 35 - parameterTypes set in new()
ok 36 - setParameterTypes returns correct value
ok 37 - getParameterTypes fetches correct value
ok 38 - addParameterTypes returns number of items in list
ok 39 - addParameterTypes adds correct value
ok 40 - setParameterTypes throws exception with non-array argument
ok 41 - setParameterTypes throws exception with bad argument array
ok 42 - addParameterTypes throws exception with no arguments
ok 43 - addParameterTypes throws exception with bad array
ok 44 - setParameterTypes accepts empty array ref
ok 45 - getParameterTypes throws exception with argument
ok 46 - setParameterTypes throws exception with no argument
ok 47 - setParameterTypes throws exception with too many argument
ok 48 - setParameterTypes accepts undef
ok 49 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 50 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 51 - parameterTypes->other() is a valid Bio::MAGE::Association::End
ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 53 - parameterTypes->self() is a valid Bio::MAGE::Association::End
ok 54 - auditTrail set in new()
ok 55 - setAuditTrail returns correct value
ok 56 - getAuditTrail fetches correct value
ok 57 - addAuditTrail returns number of items in list
ok 58 - addAuditTrail adds correct value
ok 59 - setAuditTrail throws exception with non-array argument
ok 60 - setAuditTrail throws exception with bad argument array
ok 61 - addAuditTrail throws exception with no arguments
ok 62 - addAuditTrail throws exception with bad array
ok 63 - setAuditTrail accepts empty array ref
ok 64 - getAuditTrail throws exception with argument
ok 65 - setAuditTrail throws exception with no argument
ok 66 - setAuditTrail throws exception with too many argument
ok 67 - setAuditTrail accepts undef
ok 68 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 69 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 70 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 72 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 73 - propertySets set in new()
ok 74 - setPropertySets returns correct value
ok 75 - getPropertySets fetches correct value
ok 76 - addPropertySets returns number of items in list
ok 77 - addPropertySets adds correct value
ok 78 - setPropertySets throws exception with non-array argument
ok 79 - setPropertySets throws exception with bad argument array
ok 80 - addPropertySets throws exception with no arguments
ok 81 - addPropertySets throws exception with bad array
ok 82 - setPropertySets accepts empty array ref
ok 83 - getPropertySets throws exception with argument
ok 84 - setPropertySets throws exception with no argument
ok 85 - setPropertySets throws exception with too many argument
ok 86 - setPropertySets accepts undef
ok 87 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 88 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 89 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 90 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 91 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 92 - hardwares set in new()
ok 93 - setHardwares returns correct value
ok 94 - getHardwares fetches correct value
ok 95 - addHardwares returns number of items in list
ok 96 - addHardwares adds correct value
ok 97 - setHardwares throws exception with non-array argument
ok 98 - setHardwares throws exception with bad argument array
ok 99 - addHardwares throws exception with no arguments
ok 100 - addHardwares throws exception with bad array
ok 101 - setHardwares accepts empty array ref
ok 102 - getHardwares throws exception with argument
ok 103 - setHardwares throws exception with no argument
ok 104 - setHardwares throws exception with too many argument
ok 105 - setHardwares accepts undef
ok 106 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 107 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 108 - hardwares->other() is a valid Bio::MAGE::Association::End
ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 110 - hardwares->self() is a valid Bio::MAGE::Association::End
ok 111 - descriptions set in new()
ok 112 - setDescriptions returns correct value
ok 113 - getDescriptions fetches correct value
ok 114 - addDescriptions returns number of items in list
ok 115 - addDescriptions adds correct value
ok 116 - setDescriptions throws exception with non-array argument
ok 117 - setDescriptions throws exception with bad argument array
ok 118 - addDescriptions throws exception with no arguments
ok 119 - addDescriptions throws exception with bad array
ok 120 - setDescriptions accepts empty array ref
ok 121 - getDescriptions throws exception with argument
ok 122 - setDescriptions throws exception with no argument
ok 123 - setDescriptions throws exception with too many argument
ok 124 - setDescriptions accepts undef
ok 125 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 126 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 127 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 129 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 130 - softwares set in new()
ok 131 - setSoftwares returns correct value
ok 132 - getSoftwares fetches correct value
ok 133 - addSoftwares returns number of items in list
ok 134 - addSoftwares adds correct value
ok 135 - setSoftwares throws exception with non-array argument
ok 136 - setSoftwares throws exception with bad argument array
ok 137 - addSoftwares throws exception with no arguments
ok 138 - addSoftwares throws exception with bad array
ok 139 - setSoftwares accepts empty array ref
ok 140 - getSoftwares throws exception with argument
ok 141 - setSoftwares throws exception with no argument
ok 142 - setSoftwares throws exception with too many argument
ok 143 - setSoftwares accepts undef
ok 144 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 145 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 146 - softwares->other() is a valid Bio::MAGE::Association::End
ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 148 - softwares->self() is a valid Bio::MAGE::Association::End
ok 149 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 150 - setSecurity returns value
ok 151 - getSecurity fetches correct value
ok 152 - setSecurity throws exception with bad argument
ok 153 - getSecurity throws exception with argument
ok 154 - setSecurity throws exception with no argument
ok 155 - setSecurity throws exception with too many argument
ok 156 - setSecurity accepts undef
ok 157 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 158 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 159 - security->other() is a valid Bio::MAGE::Association::End
ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 161 - security->self() is a valid Bio::MAGE::Association::End
ok 162 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 163 - setType returns value
ok 164 - getType fetches correct value
ok 165 - setType throws exception with bad argument
ok 166 - getType throws exception with argument
ok 167 - setType throws exception with no argument
ok 168 - setType throws exception with too many argument
ok 169 - setType accepts undef
ok 170 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 171 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 172 - type->other() is a valid Bio::MAGE::Association::End
ok 173 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 174 - type->self() is a valid Bio::MAGE::Association::End
ok 175 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Protocol::Parameterizable'
ok 176 - An object of class 'Bio::MAGE::Protocol::Protocol' isa 'Bio::MAGE::Protocol::Parameterizable'
ok
t/Protocol_package.t .............
1..33
ok 1 - use Bio::MAGE::Protocol;
ok 2 - number of subclasses
ok 3 - An object of class 'Bio::MAGE::Protocol::Protocol' isa 'Bio::MAGE::Protocol::Protocol'
ok 4 - An object of class 'Bio::MAGE::Protocol::Parameter' isa 'Bio::MAGE::Protocol::Parameter'
ok 5 - An object of class 'Bio::MAGE::Protocol::ParameterValue' isa 'Bio::MAGE::Protocol::ParameterValue'
ok 6 - An object of class 'Bio::MAGE::Protocol::ProtocolApplication' isa 'Bio::MAGE::Protocol::ProtocolApplication'
ok 7 - An object of class 'Bio::MAGE::Protocol::Software' isa 'Bio::MAGE::Protocol::Software'
ok 8 - An object of class 'Bio::MAGE::Protocol::Hardware' isa 'Bio::MAGE::Protocol::Hardware'
ok 9 - An object of class 'Bio::MAGE::Protocol::HardwareApplication' isa 'Bio::MAGE::Protocol::HardwareApplication'
ok 10 - An object of class 'Bio::MAGE::Protocol::SoftwareApplication' isa 'Bio::MAGE::Protocol::SoftwareApplication'
ok 11 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Protocol::Parameterizable'
ok 12 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication'
ok 13 - An object of class 'Bio::MAGE::Protocol' isa 'Bio::MAGE::Protocol'
ok 14 - tagname
ok 15 - xml_lists
ok 16 - A reference of type 'ARRAY' isa 'ARRAY'
ok 17 - hardware_list empty
ok 18 - A reference of type 'ARRAY' isa 'ARRAY'
ok 19 - getHardware_list empty
ok 20 - A reference of type 'ARRAY' isa 'ARRAY'
ok 21 - getHardware_list not empty
ok 22 - A reference of type 'ARRAY' isa 'ARRAY'
ok 23 - software_list empty
ok 24 - A reference of type 'ARRAY' isa 'ARRAY'
ok 25 - getSoftware_list empty
ok 26 - A reference of type 'ARRAY' isa 'ARRAY'
ok 27 - getSoftware_list not empty
ok 28 - A reference of type 'ARRAY' isa 'ARRAY'
ok 29 - protocol_list empty
ok 30 - A reference of type 'ARRAY' isa 'ARRAY'
ok 31 - getProtocol_list empty
ok 32 - A reference of type 'ARRAY' isa 'ARRAY'
ok 33 - getProtocol_list not empty
ok
t/ProtocolApplication.t ..........
1..171
ok 1 - use Bio::MAGE::Protocol::ProtocolApplication;
ok 2 - An object of class 'Bio::MAGE::Protocol::ProtocolApplication' isa 'Bio::MAGE::Protocol::ProtocolApplication'
ok 3 - package
ok 4 - class_name
ok 5 - activityDate new
ok 6 - activityDate getter/setter
ok 7 - activityDate getter throws exception with argument
ok 8 - activityDate setter throws exception with no argument
ok 9 - activityDate setter throws exception with too many argument
ok 10 - activityDate setter accepts undef
ok 11 - An object of class 'Bio::MAGE::Protocol::Protocol' isa 'Bio::MAGE::Protocol::Protocol'
ok 12 - setProtocol returns value
ok 13 - getProtocol fetches correct value
ok 14 - setProtocol throws exception with bad argument
ok 15 - getProtocol throws exception with argument
ok 16 - setProtocol throws exception with no argument
ok 17 - setProtocol throws exception with too many argument
ok 18 - setProtocol accepts undef
ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 21 - protocol->other() is a valid Bio::MAGE::Association::End
ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 23 - protocol->self() is a valid Bio::MAGE::Association::End
ok 24 - hardwareApplications set in new()
ok 25 - setHardwareApplications returns correct value
ok 26 - getHardwareApplications fetches correct value
ok 27 - addHardwareApplications returns number of items in list
ok 28 - addHardwareApplications adds correct value
ok 29 - setHardwareApplications throws exception with non-array argument
ok 30 - setHardwareApplications throws exception with bad argument array
ok 31 - addHardwareApplications throws exception with no arguments
ok 32 - addHardwareApplications throws exception with bad array
ok 33 - setHardwareApplications accepts empty array ref
ok 34 - getHardwareApplications throws exception with argument
ok 35 - setHardwareApplications throws exception with no argument
ok 36 - setHardwareApplications throws exception with too many argument
ok 37 - setHardwareApplications accepts undef
ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 40 - hardwareApplications->other() is a valid Bio::MAGE::Association::End
ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 42 - hardwareApplications->self() is a valid Bio::MAGE::Association::End
ok 43 - auditTrail set in new()
ok 44 - setAuditTrail returns correct value
ok 45 - getAuditTrail fetches correct value
ok 46 - addAuditTrail returns number of items in list
ok 47 - addAuditTrail adds correct value
ok 48 - setAuditTrail throws exception with non-array argument
ok 49 - setAuditTrail throws exception with bad argument array
ok 50 - addAuditTrail throws exception with no arguments
ok 51 - addAuditTrail throws exception with bad array
ok 52 - setAuditTrail accepts empty array ref
ok 53 - getAuditTrail throws exception with argument
ok 54 - setAuditTrail throws exception with no argument
ok 55 - setAuditTrail throws exception with too many argument
ok 56 - setAuditTrail accepts undef
ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 59 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 61 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 62 - propertySets set in new()
ok 63 - setPropertySets returns correct value
ok 64 - getPropertySets fetches correct value
ok 65 - addPropertySets returns number of items in list
ok 66 - addPropertySets adds correct value
ok 67 - setPropertySets throws exception with non-array argument
ok 68 - setPropertySets throws exception with bad argument array
ok 69 - addPropertySets throws exception with no arguments
ok 70 - addPropertySets throws exception with bad array
ok 71 - setPropertySets accepts empty array ref
ok 72 - getPropertySets throws exception with argument
ok 73 - setPropertySets throws exception with no argument
ok 74 - setPropertySets throws exception with too many argument
ok 75 - setPropertySets accepts undef
ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 78 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 80 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 81 - softwareApplications set in new()
ok 82 - setSoftwareApplications returns correct value
ok 83 - getSoftwareApplications fetches correct value
ok 84 - addSoftwareApplications returns number of items in list
ok 85 - addSoftwareApplications adds correct value
ok 86 - setSoftwareApplications throws exception with non-array argument
ok 87 - setSoftwareApplications throws exception with bad argument array
ok 88 - addSoftwareApplications throws exception with no arguments
ok 89 - addSoftwareApplications throws exception with bad array
ok 90 - setSoftwareApplications accepts empty array ref
ok 91 - getSoftwareApplications throws exception with argument
ok 92 - setSoftwareApplications throws exception with no argument
ok 93 - setSoftwareApplications throws exception with too many argument
ok 94 - setSoftwareApplications accepts undef
ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 97 - softwareApplications->other() is a valid Bio::MAGE::Association::End
ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 99 - softwareApplications->self() is a valid Bio::MAGE::Association::End
ok 100 - descriptions set in new()
ok 101 - setDescriptions returns correct value
ok 102 - getDescriptions fetches correct value
ok 103 - addDescriptions returns number of items in list
ok 104 - addDescriptions adds correct value
ok 105 - setDescriptions throws exception with non-array argument
ok 106 - setDescriptions throws exception with bad argument array
ok 107 - addDescriptions throws exception with no arguments
ok 108 - addDescriptions throws exception with bad array
ok 109 - setDescriptions accepts empty array ref
ok 110 - getDescriptions throws exception with argument
ok 111 - setDescriptions throws exception with no argument
ok 112 - setDescriptions throws exception with too many argument
ok 113 - setDescriptions accepts undef
ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 116 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 118 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 119 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 120 - setSecurity returns value
ok 121 - getSecurity fetches correct value
ok 122 - setSecurity throws exception with bad argument
ok 123 - getSecurity throws exception with argument
ok 124 - setSecurity throws exception with no argument
ok 125 - setSecurity throws exception with too many argument
ok 126 - setSecurity accepts undef
ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 129 - security->other() is a valid Bio::MAGE::Association::End
ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 131 - security->self() is a valid Bio::MAGE::Association::End
ok 132 - performers set in new()
ok 133 - setPerformers returns correct value
ok 134 - getPerformers fetches correct value
ok 135 - addPerformers returns number of items in list
ok 136 - addPerformers adds correct value
ok 137 - setPerformers throws exception with non-array argument
ok 138 - setPerformers throws exception with bad argument array
ok 139 - addPerformers throws exception with no arguments
ok 140 - addPerformers throws exception with bad array
ok 141 - setPerformers accepts empty array ref
ok 142 - getPerformers throws exception with argument
ok 143 - setPerformers throws exception with no argument
ok 144 - setPerformers throws exception with too many argument
ok 145 - setPerformers accepts undef
ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 148 - performers->other() is a valid Bio::MAGE::Association::End
ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 150 - performers->self() is a valid Bio::MAGE::Association::End
ok 151 - parameterValues set in new()
ok 152 - setParameterValues returns correct value
ok 153 - getParameterValues fetches correct value
ok 154 - addParameterValues returns number of items in list
ok 155 - addParameterValues adds correct value
ok 156 - setParameterValues throws exception with non-array argument
ok 157 - setParameterValues throws exception with bad argument array
ok 158 - addParameterValues throws exception with no arguments
ok 159 - addParameterValues throws exception with bad array
ok 160 - setParameterValues accepts empty array ref
ok 161 - getParameterValues throws exception with argument
ok 162 - setParameterValues throws exception with no argument
ok 163 - setParameterValues throws exception with too many argument
ok 164 - setParameterValues accepts undef
ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 167 - parameterValues->other() is a valid Bio::MAGE::Association::End
ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 169 - parameterValues->self() is a valid Bio::MAGE::Association::End
ok 170 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication'
ok 171 - An object of class 'Bio::MAGE::Protocol::ProtocolApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication'
ok
t/PValue.t .......................
1..184
ok 1 - use Bio::MAGE::QuantitationType::PValue;
ok 2 - An object of class 'Bio::MAGE::QuantitationType::PValue' isa 'Bio::MAGE::QuantitationType::PValue'
ok 3 - package
ok 4 - class_name
ok 5 - isBackground new
ok 6 - isBackground getter/setter
ok 7 - isBackground getter throws exception with argument
ok 8 - isBackground setter throws exception with no argument
ok 9 - isBackground setter throws exception with too many argument
ok 10 - isBackground setter accepts undef
ok 11 - identifier new
ok 12 - identifier getter/setter
ok 13 - identifier getter throws exception with argument
ok 14 - identifier setter throws exception with no argument
ok 15 - identifier setter throws exception with too many argument
ok 16 - identifier setter accepts undef
ok 17 - name new
ok 18 - name getter/setter
ok 19 - name getter throws exception with argument
ok 20 - name setter throws exception with no argument
ok 21 - name setter throws exception with too many argument
ok 22 - name setter accepts undef
ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 24 - setDataType returns value
ok 25 - getDataType fetches correct value
ok 26 - setDataType throws exception with bad argument
ok 27 - getDataType throws exception with argument
ok 28 - setDataType throws exception with no argument
ok 29 - setDataType throws exception with too many argument
ok 30 - setDataType accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - dataType->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - dataType->self() is a valid Bio::MAGE::Association::End
ok 36 - auditTrail set in new()
ok 37 - setAuditTrail returns correct value
ok 38 - getAuditTrail fetches correct value
ok 39 - addAuditTrail returns number of items in list
ok 40 - addAuditTrail adds correct value
ok 41 - setAuditTrail throws exception with non-array argument
ok 42 - setAuditTrail throws exception with bad argument array
ok 43 - addAuditTrail throws exception with no arguments
ok 44 - addAuditTrail throws exception with bad array
ok 45 - setAuditTrail accepts empty array ref
ok 46 - getAuditTrail throws exception with argument
ok 47 - setAuditTrail throws exception with no argument
ok 48 - setAuditTrail throws exception with too many argument
ok 49 - setAuditTrail accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 55 - propertySets set in new()
ok 56 - setPropertySets returns correct value
ok 57 - getPropertySets fetches correct value
ok 58 - addPropertySets returns number of items in list
ok 59 - addPropertySets adds correct value
ok 60 - setPropertySets throws exception with non-array argument
ok 61 - setPropertySets throws exception with bad argument array
ok 62 - addPropertySets throws exception with no arguments
ok 63 - addPropertySets throws exception with bad array
ok 64 - setPropertySets accepts empty array ref
ok 65 - getPropertySets throws exception with argument
ok 66 - setPropertySets throws exception with no argument
ok 67 - setPropertySets throws exception with too many argument
ok 68 - setPropertySets accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 74 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel'
ok 75 - setChannel returns value
ok 76 - getChannel fetches correct value
ok 77 - setChannel throws exception with bad argument
ok 78 - getChannel throws exception with argument
ok 79 - setChannel throws exception with no argument
ok 80 - setChannel throws exception with too many argument
ok 81 - setChannel accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - channel->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - channel->self() is a valid Bio::MAGE::Association::End
ok 87 - confidenceIndicators set in new()
ok 88 - setConfidenceIndicators returns correct value
ok 89 - getConfidenceIndicators fetches correct value
ok 90 - addConfidenceIndicators returns number of items in list
ok 91 - addConfidenceIndicators adds correct value
ok 92 - setConfidenceIndicators throws exception with non-array argument
ok 93 - setConfidenceIndicators throws exception with bad argument array
ok 94 - addConfidenceIndicators throws exception with no arguments
ok 95 - addConfidenceIndicators throws exception with bad array
ok 96 - setConfidenceIndicators accepts empty array ref
ok 97 - getConfidenceIndicators throws exception with argument
ok 98 - setConfidenceIndicators throws exception with no argument
ok 99 - setConfidenceIndicators throws exception with too many argument
ok 100 - setConfidenceIndicators accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End
ok 106 - descriptions set in new()
ok 107 - setDescriptions returns correct value
ok 108 - getDescriptions fetches correct value
ok 109 - addDescriptions returns number of items in list
ok 110 - addDescriptions adds correct value
ok 111 - setDescriptions throws exception with non-array argument
ok 112 - setDescriptions throws exception with bad argument array
ok 113 - addDescriptions throws exception with no arguments
ok 114 - addDescriptions throws exception with bad array
ok 115 - setDescriptions accepts empty array ref
ok 116 - getDescriptions throws exception with argument
ok 117 - setDescriptions throws exception with no argument
ok 118 - setDescriptions throws exception with too many argument
ok 119 - setDescriptions accepts undef
ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 122 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 124 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 125 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 126 - setSecurity returns value
ok 127 - getSecurity fetches correct value
ok 128 - setSecurity throws exception with bad argument
ok 129 - getSecurity throws exception with argument
ok 130 - setSecurity throws exception with no argument
ok 131 - setSecurity throws exception with too many argument
ok 132 - setSecurity accepts undef
ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 135 - security->other() is a valid Bio::MAGE::Association::End
ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 137 - security->self() is a valid Bio::MAGE::Association::End
ok 138 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 139 - setScale returns value
ok 140 - getScale fetches correct value
ok 141 - setScale throws exception with bad argument
ok 142 - getScale throws exception with argument
ok 143 - setScale throws exception with no argument
ok 144 - setScale throws exception with too many argument
ok 145 - setScale accepts undef
ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 148 - scale->other() is a valid Bio::MAGE::Association::End
ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 150 - scale->self() is a valid Bio::MAGE::Association::End
ok 151 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType'
ok 152 - setTargetQuantitationType returns value
ok 153 - getTargetQuantitationType fetches correct value
ok 154 - setTargetQuantitationType throws exception with bad argument
ok 155 - getTargetQuantitationType throws exception with argument
ok 156 - setTargetQuantitationType throws exception with no argument
ok 157 - setTargetQuantitationType throws exception with too many argument
ok 158 - setTargetQuantitationType accepts undef
ok 159 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 161 - targetQuantitationType->other() is a valid Bio::MAGE::Association::End
ok 162 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 163 - targetQuantitationType->self() is a valid Bio::MAGE::Association::End
ok 164 - quantitationTypeMaps set in new()
ok 165 - setQuantitationTypeMaps returns correct value
ok 166 - getQuantitationTypeMaps fetches correct value
ok 167 - addQuantitationTypeMaps returns number of items in list
ok 168 - addQuantitationTypeMaps adds correct value
ok 169 - setQuantitationTypeMaps throws exception with non-array argument
ok 170 - setQuantitationTypeMaps throws exception with bad argument array
ok 171 - addQuantitationTypeMaps throws exception with no arguments
ok 172 - addQuantitationTypeMaps throws exception with bad array
ok 173 - setQuantitationTypeMaps accepts empty array ref
ok 174 - getQuantitationTypeMaps throws exception with argument
ok 175 - setQuantitationTypeMaps throws exception with no argument
ok 176 - setQuantitationTypeMaps throws exception with too many argument
ok 177 - setQuantitationTypeMaps accepts undef
ok 178 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 179 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 180 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End
ok 181 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 182 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End
ok 183 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator'
ok 184 - An object of class 'Bio::MAGE::QuantitationType::PValue' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator'
ok
t/QuantitationType.t .............
1..175
ok 1 - use Bio::MAGE::QuantitationType::QuantitationType;
ok 2 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType'
ok 3 - package
ok 4 - class_name
ok 5 - isBackground new
ok 6 - isBackground getter/setter
ok 7 - isBackground getter throws exception with argument
ok 8 - isBackground setter throws exception with no argument
ok 9 - isBackground setter throws exception with too many argument
ok 10 - isBackground setter accepts undef
ok 11 - identifier new
ok 12 - identifier getter/setter
ok 13 - identifier getter throws exception with argument
ok 14 - identifier setter throws exception with no argument
ok 15 - identifier setter throws exception with too many argument
ok 16 - identifier setter accepts undef
ok 17 - name new
ok 18 - name getter/setter
ok 19 - name getter throws exception with argument
ok 20 - name setter throws exception with no argument
ok 21 - name setter throws exception with too many argument
ok 22 - name setter accepts undef
ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 24 - setDataType returns value
ok 25 - getDataType fetches correct value
ok 26 - setDataType throws exception with bad argument
ok 27 - getDataType throws exception with argument
ok 28 - setDataType throws exception with no argument
ok 29 - setDataType throws exception with too many argument
ok 30 - setDataType accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - dataType->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - dataType->self() is a valid Bio::MAGE::Association::End
ok 36 - descriptions set in new()
ok 37 - setDescriptions returns correct value
ok 38 - getDescriptions fetches correct value
ok 39 - addDescriptions returns number of items in list
ok 40 - addDescriptions adds correct value
ok 41 - setDescriptions throws exception with non-array argument
ok 42 - setDescriptions throws exception with bad argument array
ok 43 - addDescriptions throws exception with no arguments
ok 44 - addDescriptions throws exception with bad array
ok 45 - setDescriptions accepts empty array ref
ok 46 - getDescriptions throws exception with argument
ok 47 - setDescriptions throws exception with no argument
ok 48 - setDescriptions throws exception with too many argument
ok 49 - setDescriptions accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 55 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 56 - setScale returns value
ok 57 - getScale fetches correct value
ok 58 - setScale throws exception with bad argument
ok 59 - getScale throws exception with argument
ok 60 - setScale throws exception with no argument
ok 61 - setScale throws exception with too many argument
ok 62 - setScale accepts undef
ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 65 - scale->other() is a valid Bio::MAGE::Association::End
ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 67 - scale->self() is a valid Bio::MAGE::Association::End
ok 68 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 69 - setSecurity returns value
ok 70 - getSecurity fetches correct value
ok 71 - setSecurity throws exception with bad argument
ok 72 - getSecurity throws exception with argument
ok 73 - setSecurity throws exception with no argument
ok 74 - setSecurity throws exception with too many argument
ok 75 - setSecurity accepts undef
ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 78 - security->other() is a valid Bio::MAGE::Association::End
ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 80 - security->self() is a valid Bio::MAGE::Association::End
ok 81 - auditTrail set in new()
ok 82 - setAuditTrail returns correct value
ok 83 - getAuditTrail fetches correct value
ok 84 - addAuditTrail returns number of items in list
ok 85 - addAuditTrail adds correct value
ok 86 - setAuditTrail throws exception with non-array argument
ok 87 - setAuditTrail throws exception with bad argument array
ok 88 - addAuditTrail throws exception with no arguments
ok 89 - addAuditTrail throws exception with bad array
ok 90 - setAuditTrail accepts empty array ref
ok 91 - getAuditTrail throws exception with argument
ok 92 - setAuditTrail throws exception with no argument
ok 93 - setAuditTrail throws exception with too many argument
ok 94 - setAuditTrail accepts undef
ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 100 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel'
ok 101 - setChannel returns value
ok 102 - getChannel fetches correct value
ok 103 - setChannel throws exception with bad argument
ok 104 - getChannel throws exception with argument
ok 105 - setChannel throws exception with no argument
ok 106 - setChannel throws exception with too many argument
ok 107 - setChannel accepts undef
ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 110 - channel->other() is a valid Bio::MAGE::Association::End
ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 112 - channel->self() is a valid Bio::MAGE::Association::End
ok 113 - propertySets set in new()
ok 114 - setPropertySets returns correct value
ok 115 - getPropertySets fetches correct value
ok 116 - addPropertySets returns number of items in list
ok 117 - addPropertySets adds correct value
ok 118 - setPropertySets throws exception with non-array argument
ok 119 - setPropertySets throws exception with bad argument array
ok 120 - addPropertySets throws exception with no arguments
ok 121 - addPropertySets throws exception with bad array
ok 122 - setPropertySets accepts empty array ref
ok 123 - getPropertySets throws exception with argument
ok 124 - setPropertySets throws exception with no argument
ok 125 - setPropertySets throws exception with too many argument
ok 126 - setPropertySets accepts undef
ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 132 - confidenceIndicators set in new()
ok 133 - setConfidenceIndicators returns correct value
ok 134 - getConfidenceIndicators fetches correct value
ok 135 - addConfidenceIndicators returns number of items in list
ok 136 - addConfidenceIndicators adds correct value
ok 137 - setConfidenceIndicators throws exception with non-array argument
ok 138 - setConfidenceIndicators throws exception with bad argument array
ok 139 - addConfidenceIndicators throws exception with no arguments
ok 140 - addConfidenceIndicators throws exception with bad array
ok 141 - setConfidenceIndicators accepts empty array ref
ok 142 - getConfidenceIndicators throws exception with argument
ok 143 - setConfidenceIndicators throws exception with no argument
ok 144 - setConfidenceIndicators throws exception with too many argument
ok 145 - setConfidenceIndicators accepts undef
ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End
ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End
ok 151 - quantitationTypeMaps set in new()
ok 152 - setQuantitationTypeMaps returns correct value
ok 153 - getQuantitationTypeMaps fetches correct value
ok 154 - addQuantitationTypeMaps returns number of items in list
ok 155 - addQuantitationTypeMaps adds correct value
ok 156 - setQuantitationTypeMaps throws exception with non-array argument
ok 157 - setQuantitationTypeMaps throws exception with bad argument array
ok 158 - addQuantitationTypeMaps throws exception with no arguments
ok 159 - addQuantitationTypeMaps throws exception with bad array
ok 160 - setQuantitationTypeMaps accepts empty array ref
ok 161 - getQuantitationTypeMaps throws exception with argument
ok 162 - setQuantitationTypeMaps throws exception with no argument
ok 163 - setQuantitationTypeMaps throws exception with too many argument
ok 164 - setQuantitationTypeMaps accepts undef
ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End
ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End
ok 170 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType'
ok 171 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType'
ok 172 - An object of class 'Bio::MAGE::QuantitationType::SpecializedQuantitationType' isa 'Bio::MAGE::QuantitationType::SpecializedQuantitationType'
ok 173 - An object of class 'Bio::MAGE::QuantitationType::SpecializedQuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType'
ok 174 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 175 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::Identifiable'
ok
t/QuantitationType_package.t .....
1..23
ok 1 - use Bio::MAGE::QuantitationType;
ok 2 - number of subclasses
ok 3 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType'
ok 4 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType'
ok 5 - An object of class 'Bio::MAGE::QuantitationType::SpecializedQuantitationType' isa 'Bio::MAGE::QuantitationType::SpecializedQuantitationType'
ok 6 - An object of class 'Bio::MAGE::QuantitationType::DerivedSignal' isa 'Bio::MAGE::QuantitationType::DerivedSignal'
ok 7 - An object of class 'Bio::MAGE::QuantitationType::MeasuredSignal' isa 'Bio::MAGE::QuantitationType::MeasuredSignal'
ok 8 - An object of class 'Bio::MAGE::QuantitationType::Error' isa 'Bio::MAGE::QuantitationType::Error'
ok 9 - An object of class 'Bio::MAGE::QuantitationType::PValue' isa 'Bio::MAGE::QuantitationType::PValue'
ok 10 - An object of class 'Bio::MAGE::QuantitationType::ExpectedValue' isa 'Bio::MAGE::QuantitationType::ExpectedValue'
ok 11 - An object of class 'Bio::MAGE::QuantitationType::Ratio' isa 'Bio::MAGE::QuantitationType::Ratio'
ok 12 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator'
ok 13 - An object of class 'Bio::MAGE::QuantitationType::PresentAbsent' isa 'Bio::MAGE::QuantitationType::PresentAbsent'
ok 14 - An object of class 'Bio::MAGE::QuantitationType::Failed' isa 'Bio::MAGE::QuantitationType::Failed'
ok 15 - An object of class 'Bio::MAGE::QuantitationType' isa 'Bio::MAGE::QuantitationType'
ok 16 - tagname
ok 17 - xml_lists
ok 18 - A reference of type 'ARRAY' isa 'ARRAY'
ok 19 - quantitationtype_list empty
ok 20 - A reference of type 'ARRAY' isa 'ARRAY'
ok 21 - getQuantitationType_list empty
ok 22 - A reference of type 'ARRAY' isa 'ARRAY'
ok 23 - getQuantitationType_list not empty
ok
t/QuantitationTypeDimension.t ....
1..107
ok 1 - use Bio::MAGE::BioAssayData::QuantitationTypeDimension;
ok 2 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::BioAssayData::QuantitationTypeDimension'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - quantitationTypes set in new()
ok 18 - setQuantitationTypes returns correct value
ok 19 - getQuantitationTypes fetches correct value
ok 20 - addQuantitationTypes returns number of items in list
ok 21 - addQuantitationTypes adds correct value
ok 22 - setQuantitationTypes throws exception with non-array argument
ok 23 - setQuantitationTypes throws exception with bad argument array
ok 24 - addQuantitationTypes throws exception with no arguments
ok 25 - addQuantitationTypes throws exception with bad array
ok 26 - setQuantitationTypes accepts empty array ref
ok 27 - getQuantitationTypes throws exception with argument
ok 28 - setQuantitationTypes throws exception with no argument
ok 29 - setQuantitationTypes throws exception with too many argument
ok 30 - setQuantitationTypes accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - quantitationTypes->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - quantitationTypes->self() is a valid Bio::MAGE::Association::End
ok 36 - descriptions set in new()
ok 37 - setDescriptions returns correct value
ok 38 - getDescriptions fetches correct value
ok 39 - addDescriptions returns number of items in list
ok 40 - addDescriptions adds correct value
ok 41 - setDescriptions throws exception with non-array argument
ok 42 - setDescriptions throws exception with bad argument array
ok 43 - addDescriptions throws exception with no arguments
ok 44 - addDescriptions throws exception with bad array
ok 45 - setDescriptions accepts empty array ref
ok 46 - getDescriptions throws exception with argument
ok 47 - setDescriptions throws exception with no argument
ok 48 - setDescriptions throws exception with too many argument
ok 49 - setDescriptions accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 56 - setSecurity returns value
ok 57 - getSecurity fetches correct value
ok 58 - setSecurity throws exception with bad argument
ok 59 - getSecurity throws exception with argument
ok 60 - setSecurity throws exception with no argument
ok 61 - setSecurity throws exception with too many argument
ok 62 - setSecurity accepts undef
ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 65 - security->other() is a valid Bio::MAGE::Association::End
ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 67 - security->self() is a valid Bio::MAGE::Association::End
ok 68 - auditTrail set in new()
ok 69 - setAuditTrail returns correct value
ok 70 - getAuditTrail fetches correct value
ok 71 - addAuditTrail returns number of items in list
ok 72 - addAuditTrail adds correct value
ok 73 - setAuditTrail throws exception with non-array argument
ok 74 - setAuditTrail throws exception with bad argument array
ok 75 - addAuditTrail throws exception with no arguments
ok 76 - addAuditTrail throws exception with bad array
ok 77 - setAuditTrail accepts empty array ref
ok 78 - getAuditTrail throws exception with argument
ok 79 - setAuditTrail throws exception with no argument
ok 80 - setAuditTrail throws exception with too many argument
ok 81 - setAuditTrail accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 87 - propertySets set in new()
ok 88 - setPropertySets returns correct value
ok 89 - getPropertySets fetches correct value
ok 90 - addPropertySets returns number of items in list
ok 91 - addPropertySets adds correct value
ok 92 - setPropertySets throws exception with non-array argument
ok 93 - setPropertySets throws exception with bad argument array
ok 94 - addPropertySets throws exception with no arguments
ok 95 - addPropertySets throws exception with bad array
ok 96 - setPropertySets accepts empty array ref
ok 97 - getPropertySets throws exception with argument
ok 98 - setPropertySets throws exception with no argument
ok 99 - setPropertySets throws exception with too many argument
ok 100 - setPropertySets accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 106 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 107 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::Identifiable'
ok
t/QuantitationTypeMap.t ..........
1..139
ok 1 - use Bio::MAGE::BioAssayData::QuantitationTypeMap;
ok 2 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMap' isa 'Bio::MAGE::BioAssayData::QuantitationTypeMap'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - protocolApplications set in new()
ok 18 - setProtocolApplications returns correct value
ok 19 - getProtocolApplications fetches correct value
ok 20 - addProtocolApplications returns number of items in list
ok 21 - addProtocolApplications adds correct value
ok 22 - setProtocolApplications throws exception with non-array argument
ok 23 - setProtocolApplications throws exception with bad argument array
ok 24 - addProtocolApplications throws exception with no arguments
ok 25 - addProtocolApplications throws exception with bad array
ok 26 - setProtocolApplications accepts empty array ref
ok 27 - getProtocolApplications throws exception with argument
ok 28 - setProtocolApplications throws exception with no argument
ok 29 - setProtocolApplications throws exception with too many argument
ok 30 - setProtocolApplications accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End
ok 36 - sourcesQuantitationType set in new()
ok 37 - setSourcesQuantitationType returns correct value
ok 38 - getSourcesQuantitationType fetches correct value
ok 39 - addSourcesQuantitationType returns number of items in list
ok 40 - addSourcesQuantitationType adds correct value
ok 41 - setSourcesQuantitationType throws exception with non-array argument
ok 42 - setSourcesQuantitationType throws exception with bad argument array
ok 43 - addSourcesQuantitationType throws exception with no arguments
ok 44 - addSourcesQuantitationType throws exception with bad array
ok 45 - setSourcesQuantitationType accepts empty array ref
ok 46 - getSourcesQuantitationType throws exception with argument
ok 47 - setSourcesQuantitationType throws exception with no argument
ok 48 - setSourcesQuantitationType throws exception with too many argument
ok 49 - setSourcesQuantitationType accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - sourcesQuantitationType->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - sourcesQuantitationType->self() is a valid Bio::MAGE::Association::End
ok 55 - descriptions set in new()
ok 56 - setDescriptions returns correct value
ok 57 - getDescriptions fetches correct value
ok 58 - addDescriptions returns number of items in list
ok 59 - addDescriptions adds correct value
ok 60 - setDescriptions throws exception with non-array argument
ok 61 - setDescriptions throws exception with bad argument array
ok 62 - addDescriptions throws exception with no arguments
ok 63 - addDescriptions throws exception with bad array
ok 64 - setDescriptions accepts empty array ref
ok 65 - getDescriptions throws exception with argument
ok 66 - setDescriptions throws exception with no argument
ok 67 - setDescriptions throws exception with too many argument
ok 68 - setDescriptions accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 75 - setSecurity returns value
ok 76 - getSecurity fetches correct value
ok 77 - setSecurity throws exception with bad argument
ok 78 - getSecurity throws exception with argument
ok 79 - setSecurity throws exception with no argument
ok 80 - setSecurity throws exception with too many argument
ok 81 - setSecurity accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - security->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - security->self() is a valid Bio::MAGE::Association::End
ok 87 - auditTrail set in new()
ok 88 - setAuditTrail returns correct value
ok 89 - getAuditTrail fetches correct value
ok 90 - addAuditTrail returns number of items in list
ok 91 - addAuditTrail adds correct value
ok 92 - setAuditTrail throws exception with non-array argument
ok 93 - setAuditTrail throws exception with bad argument array
ok 94 - addAuditTrail throws exception with no arguments
ok 95 - addAuditTrail throws exception with bad array
ok 96 - setAuditTrail accepts empty array ref
ok 97 - getAuditTrail throws exception with argument
ok 98 - setAuditTrail throws exception with no argument
ok 99 - setAuditTrail throws exception with too many argument
ok 100 - setAuditTrail accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 106 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType'
ok 107 - setTargetQuantitationType returns value
ok 108 - getTargetQuantitationType fetches correct value
ok 109 - setTargetQuantitationType throws exception with bad argument
ok 110 - getTargetQuantitationType throws exception with argument
ok 111 - setTargetQuantitationType throws exception with no argument
ok 112 - setTargetQuantitationType throws exception with too many argument
ok 113 - setTargetQuantitationType accepts undef
ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 116 - targetQuantitationType->other() is a valid Bio::MAGE::Association::End
ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 118 - targetQuantitationType->self() is a valid Bio::MAGE::Association::End
ok 119 - propertySets set in new()
ok 120 - setPropertySets returns correct value
ok 121 - getPropertySets fetches correct value
ok 122 - addPropertySets returns number of items in list
ok 123 - addPropertySets adds correct value
ok 124 - setPropertySets throws exception with non-array argument
ok 125 - setPropertySets throws exception with bad argument array
ok 126 - addPropertySets throws exception with no arguments
ok 127 - addPropertySets throws exception with bad array
ok 128 - setPropertySets accepts empty array ref
ok 129 - getPropertySets throws exception with argument
ok 130 - setPropertySets throws exception with no argument
ok 131 - setPropertySets throws exception with too many argument
ok 132 - setPropertySets accepts undef
ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 135 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 137 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 138 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::Map'
ok 139 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMap' isa 'Bio::MAGE::BioEvent::Map'
ok
t/QuantitationTypeMapping.t ......
1..44
ok 1 - use Bio::MAGE::BioAssayData::QuantitationTypeMapping;
ok 2 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' isa 'Bio::MAGE::BioAssayData::QuantitationTypeMapping'
ok 3 - package
ok 4 - class_name
ok 5 - propertySets set in new()
ok 6 - setPropertySets returns correct value
ok 7 - getPropertySets fetches correct value
ok 8 - addPropertySets returns number of items in list
ok 9 - addPropertySets adds correct value
ok 10 - setPropertySets throws exception with non-array argument
ok 11 - setPropertySets throws exception with bad argument array
ok 12 - addPropertySets throws exception with no arguments
ok 13 - addPropertySets throws exception with bad array
ok 14 - setPropertySets accepts empty array ref
ok 15 - getPropertySets throws exception with argument
ok 16 - setPropertySets throws exception with no argument
ok 17 - setPropertySets throws exception with too many argument
ok 18 - setPropertySets accepts undef
ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 21 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 23 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 24 - quantitationTypeMaps set in new()
ok 25 - setQuantitationTypeMaps returns correct value
ok 26 - getQuantitationTypeMaps fetches correct value
ok 27 - addQuantitationTypeMaps returns number of items in list
ok 28 - addQuantitationTypeMaps adds correct value
ok 29 - setQuantitationTypeMaps throws exception with non-array argument
ok 30 - setQuantitationTypeMaps throws exception with bad argument array
ok 31 - addQuantitationTypeMaps throws exception with no arguments
ok 32 - addQuantitationTypeMaps throws exception with bad array
ok 33 - setQuantitationTypeMaps accepts empty array ref
ok 34 - getQuantitationTypeMaps throws exception with argument
ok 35 - setQuantitationTypeMaps throws exception with no argument
ok 36 - setQuantitationTypeMaps throws exception with too many argument
ok 37 - setQuantitationTypeMaps accepts undef
ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 40 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End
ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 42 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End
ok 43 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable'
ok 44 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' isa 'Bio::MAGE::Extendable'
ok
t/QuantityUnit.t .................
1..47
ok 1 - use Bio::MAGE::Measurement::QuantityUnit;
ok 2 - An object of class 'Bio::MAGE::Measurement::QuantityUnit' isa 'Bio::MAGE::Measurement::QuantityUnit'
ok 3 - package
ok 4 - class_name
ok 5 - unitName new
ok 6 - unitName getter/setter
ok 7 - unitName getter throws exception with argument
ok 8 - unitName setter throws exception with no argument
ok 9 - unitName setter throws exception with too many argument
ok 10 - unitName setter accepts undef
ok 11 - unitNameCV new
ok 12 - unitNameCV getter/setter
ok 13 - unitNameCV getter throws exception with argument
ok 14 - unitNameCV setter throws exception with no argument
ok 15 - unitNameCV setter throws exception with too many argument
ok 16 - unitNameCV setter accepts undef
ok 17 - unitNameCV setter throws exception with bad argument
ok 18 - unitNameCV accepts mol
ok 19 - unitNameCV accepts amol
ok 20 - unitNameCV accepts fmol
ok 21 - unitNameCV accepts pmol
ok 22 - unitNameCV accepts nmol
ok 23 - unitNameCV accepts umol
ok 24 - unitNameCV accepts mmol
ok 25 - unitNameCV accepts molecules
ok 26 - unitNameCV accepts other
ok 27 - propertySets set in new()
ok 28 - setPropertySets returns correct value
ok 29 - getPropertySets fetches correct value
ok 30 - addPropertySets returns number of items in list
ok 31 - addPropertySets adds correct value
ok 32 - setPropertySets throws exception with non-array argument
ok 33 - setPropertySets throws exception with bad argument array
ok 34 - addPropertySets throws exception with no arguments
ok 35 - addPropertySets throws exception with bad array
ok 36 - setPropertySets accepts empty array ref
ok 37 - getPropertySets throws exception with argument
ok 38 - setPropertySets throws exception with no argument
ok 39 - setPropertySets throws exception with too many argument
ok 40 - setPropertySets accepts undef
ok 41 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 42 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 43 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 45 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 46 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit'
ok 47 - An object of class 'Bio::MAGE::Measurement::QuantityUnit' isa 'Bio::MAGE::Measurement::Unit'
ok
t/Ratio.t ........................
1..171
ok 1 - use Bio::MAGE::QuantitationType::Ratio;
ok 2 - An object of class 'Bio::MAGE::QuantitationType::Ratio' isa 'Bio::MAGE::QuantitationType::Ratio'
ok 3 - package
ok 4 - class_name
ok 5 - isBackground new
ok 6 - isBackground getter/setter
ok 7 - isBackground getter throws exception with argument
ok 8 - isBackground setter throws exception with no argument
ok 9 - isBackground setter throws exception with too many argument
ok 10 - isBackground setter accepts undef
ok 11 - identifier new
ok 12 - identifier getter/setter
ok 13 - identifier getter throws exception with argument
ok 14 - identifier setter throws exception with no argument
ok 15 - identifier setter throws exception with too many argument
ok 16 - identifier setter accepts undef
ok 17 - name new
ok 18 - name getter/setter
ok 19 - name getter throws exception with argument
ok 20 - name setter throws exception with no argument
ok 21 - name setter throws exception with too many argument
ok 22 - name setter accepts undef
ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 24 - setDataType returns value
ok 25 - getDataType fetches correct value
ok 26 - setDataType throws exception with bad argument
ok 27 - getDataType throws exception with argument
ok 28 - setDataType throws exception with no argument
ok 29 - setDataType throws exception with too many argument
ok 30 - setDataType accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - dataType->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - dataType->self() is a valid Bio::MAGE::Association::End
ok 36 - descriptions set in new()
ok 37 - setDescriptions returns correct value
ok 38 - getDescriptions fetches correct value
ok 39 - addDescriptions returns number of items in list
ok 40 - addDescriptions adds correct value
ok 41 - setDescriptions throws exception with non-array argument
ok 42 - setDescriptions throws exception with bad argument array
ok 43 - addDescriptions throws exception with no arguments
ok 44 - addDescriptions throws exception with bad array
ok 45 - setDescriptions accepts empty array ref
ok 46 - getDescriptions throws exception with argument
ok 47 - setDescriptions throws exception with no argument
ok 48 - setDescriptions throws exception with too many argument
ok 49 - setDescriptions accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 55 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 56 - setScale returns value
ok 57 - getScale fetches correct value
ok 58 - setScale throws exception with bad argument
ok 59 - getScale throws exception with argument
ok 60 - setScale throws exception with no argument
ok 61 - setScale throws exception with too many argument
ok 62 - setScale accepts undef
ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 65 - scale->other() is a valid Bio::MAGE::Association::End
ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 67 - scale->self() is a valid Bio::MAGE::Association::End
ok 68 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 69 - setSecurity returns value
ok 70 - getSecurity fetches correct value
ok 71 - setSecurity throws exception with bad argument
ok 72 - getSecurity throws exception with argument
ok 73 - setSecurity throws exception with no argument
ok 74 - setSecurity throws exception with too many argument
ok 75 - setSecurity accepts undef
ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 78 - security->other() is a valid Bio::MAGE::Association::End
ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 80 - security->self() is a valid Bio::MAGE::Association::End
ok 81 - auditTrail set in new()
ok 82 - setAuditTrail returns correct value
ok 83 - getAuditTrail fetches correct value
ok 84 - addAuditTrail returns number of items in list
ok 85 - addAuditTrail adds correct value
ok 86 - setAuditTrail throws exception with non-array argument
ok 87 - setAuditTrail throws exception with bad argument array
ok 88 - addAuditTrail throws exception with no arguments
ok 89 - addAuditTrail throws exception with bad array
ok 90 - setAuditTrail accepts empty array ref
ok 91 - getAuditTrail throws exception with argument
ok 92 - setAuditTrail throws exception with no argument
ok 93 - setAuditTrail throws exception with too many argument
ok 94 - setAuditTrail accepts undef
ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 100 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel'
ok 101 - setChannel returns value
ok 102 - getChannel fetches correct value
ok 103 - setChannel throws exception with bad argument
ok 104 - getChannel throws exception with argument
ok 105 - setChannel throws exception with no argument
ok 106 - setChannel throws exception with too many argument
ok 107 - setChannel accepts undef
ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 110 - channel->other() is a valid Bio::MAGE::Association::End
ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 112 - channel->self() is a valid Bio::MAGE::Association::End
ok 113 - propertySets set in new()
ok 114 - setPropertySets returns correct value
ok 115 - getPropertySets fetches correct value
ok 116 - addPropertySets returns number of items in list
ok 117 - addPropertySets adds correct value
ok 118 - setPropertySets throws exception with non-array argument
ok 119 - setPropertySets throws exception with bad argument array
ok 120 - addPropertySets throws exception with no arguments
ok 121 - addPropertySets throws exception with bad array
ok 122 - setPropertySets accepts empty array ref
ok 123 - getPropertySets throws exception with argument
ok 124 - setPropertySets throws exception with no argument
ok 125 - setPropertySets throws exception with too many argument
ok 126 - setPropertySets accepts undef
ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 132 - confidenceIndicators set in new()
ok 133 - setConfidenceIndicators returns correct value
ok 134 - getConfidenceIndicators fetches correct value
ok 135 - addConfidenceIndicators returns number of items in list
ok 136 - addConfidenceIndicators adds correct value
ok 137 - setConfidenceIndicators throws exception with non-array argument
ok 138 - setConfidenceIndicators throws exception with bad argument array
ok 139 - addConfidenceIndicators throws exception with no arguments
ok 140 - addConfidenceIndicators throws exception with bad array
ok 141 - setConfidenceIndicators accepts empty array ref
ok 142 - getConfidenceIndicators throws exception with argument
ok 143 - setConfidenceIndicators throws exception with no argument
ok 144 - setConfidenceIndicators throws exception with too many argument
ok 145 - setConfidenceIndicators accepts undef
ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End
ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End
ok 151 - quantitationTypeMaps set in new()
ok 152 - setQuantitationTypeMaps returns correct value
ok 153 - getQuantitationTypeMaps fetches correct value
ok 154 - addQuantitationTypeMaps returns number of items in list
ok 155 - addQuantitationTypeMaps adds correct value
ok 156 - setQuantitationTypeMaps throws exception with non-array argument
ok 157 - setQuantitationTypeMaps throws exception with bad argument array
ok 158 - addQuantitationTypeMaps throws exception with no arguments
ok 159 - addQuantitationTypeMaps throws exception with bad array
ok 160 - setQuantitationTypeMaps accepts empty array ref
ok 161 - getQuantitationTypeMaps throws exception with argument
ok 162 - setQuantitationTypeMaps throws exception with no argument
ok 163 - setQuantitationTypeMaps throws exception with too many argument
ok 164 - setQuantitationTypeMaps accepts undef
ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End
ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End
ok 170 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType'
ok 171 - An object of class 'Bio::MAGE::QuantitationType::Ratio' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType'
ok
t/Reporter.t .....................
1..171
ok 1 - use Bio::MAGE::DesignElement::Reporter;
ok 2 - An object of class 'Bio::MAGE::DesignElement::Reporter' isa 'Bio::MAGE::DesignElement::Reporter'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 18 - setWarningType returns value
ok 19 - getWarningType fetches correct value
ok 20 - setWarningType throws exception with bad argument
ok 21 - getWarningType throws exception with argument
ok 22 - setWarningType throws exception with no argument
ok 23 - setWarningType throws exception with too many argument
ok 24 - setWarningType accepts undef
ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 27 - warningType->other() is a valid Bio::MAGE::Association::End
ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 29 - warningType->self() is a valid Bio::MAGE::Association::End
ok 30 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 31 - setControlType returns value
ok 32 - getControlType fetches correct value
ok 33 - setControlType throws exception with bad argument
ok 34 - getControlType throws exception with argument
ok 35 - setControlType throws exception with no argument
ok 36 - setControlType throws exception with too many argument
ok 37 - setControlType accepts undef
ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 40 - controlType->other() is a valid Bio::MAGE::Association::End
ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 42 - controlType->self() is a valid Bio::MAGE::Association::End
ok 43 - failTypes set in new()
ok 44 - setFailTypes returns correct value
ok 45 - getFailTypes fetches correct value
ok 46 - addFailTypes returns number of items in list
ok 47 - addFailTypes adds correct value
ok 48 - setFailTypes throws exception with non-array argument
ok 49 - setFailTypes throws exception with bad argument array
ok 50 - addFailTypes throws exception with no arguments
ok 51 - addFailTypes throws exception with bad array
ok 52 - setFailTypes accepts empty array ref
ok 53 - getFailTypes throws exception with argument
ok 54 - setFailTypes throws exception with no argument
ok 55 - setFailTypes throws exception with too many argument
ok 56 - setFailTypes accepts undef
ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 59 - failTypes->other() is a valid Bio::MAGE::Association::End
ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 61 - failTypes->self() is a valid Bio::MAGE::Association::End
ok 62 - descriptions set in new()
ok 63 - setDescriptions returns correct value
ok 64 - getDescriptions fetches correct value
ok 65 - addDescriptions returns number of items in list
ok 66 - addDescriptions adds correct value
ok 67 - setDescriptions throws exception with non-array argument
ok 68 - setDescriptions throws exception with bad argument array
ok 69 - addDescriptions throws exception with no arguments
ok 70 - addDescriptions throws exception with bad array
ok 71 - setDescriptions accepts empty array ref
ok 72 - getDescriptions throws exception with argument
ok 73 - setDescriptions throws exception with no argument
ok 74 - setDescriptions throws exception with too many argument
ok 75 - setDescriptions accepts undef
ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 78 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 80 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 81 - auditTrail set in new()
ok 82 - setAuditTrail returns correct value
ok 83 - getAuditTrail fetches correct value
ok 84 - addAuditTrail returns number of items in list
ok 85 - addAuditTrail adds correct value
ok 86 - setAuditTrail throws exception with non-array argument
ok 87 - setAuditTrail throws exception with bad argument array
ok 88 - addAuditTrail throws exception with no arguments
ok 89 - addAuditTrail throws exception with bad array
ok 90 - setAuditTrail accepts empty array ref
ok 91 - getAuditTrail throws exception with argument
ok 92 - setAuditTrail throws exception with no argument
ok 93 - setAuditTrail throws exception with too many argument
ok 94 - setAuditTrail accepts undef
ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 100 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 101 - setSecurity returns value
ok 102 - getSecurity fetches correct value
ok 103 - setSecurity throws exception with bad argument
ok 104 - getSecurity throws exception with argument
ok 105 - setSecurity throws exception with no argument
ok 106 - setSecurity throws exception with too many argument
ok 107 - setSecurity accepts undef
ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 110 - security->other() is a valid Bio::MAGE::Association::End
ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 112 - security->self() is a valid Bio::MAGE::Association::End
ok 113 - propertySets set in new()
ok 114 - setPropertySets returns correct value
ok 115 - getPropertySets fetches correct value
ok 116 - addPropertySets returns number of items in list
ok 117 - addPropertySets adds correct value
ok 118 - setPropertySets throws exception with non-array argument
ok 119 - setPropertySets throws exception with bad argument array
ok 120 - addPropertySets throws exception with no arguments
ok 121 - addPropertySets throws exception with bad array
ok 122 - setPropertySets accepts empty array ref
ok 123 - getPropertySets throws exception with argument
ok 124 - setPropertySets throws exception with no argument
ok 125 - setPropertySets throws exception with too many argument
ok 126 - setPropertySets accepts undef
ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 132 - immobilizedCharacteristics set in new()
ok 133 - setImmobilizedCharacteristics returns correct value
ok 134 - getImmobilizedCharacteristics fetches correct value
ok 135 - addImmobilizedCharacteristics returns number of items in list
ok 136 - addImmobilizedCharacteristics adds correct value
ok 137 - setImmobilizedCharacteristics throws exception with non-array argument
ok 138 - setImmobilizedCharacteristics throws exception with bad argument array
ok 139 - addImmobilizedCharacteristics throws exception with no arguments
ok 140 - addImmobilizedCharacteristics throws exception with bad array
ok 141 - setImmobilizedCharacteristics accepts empty array ref
ok 142 - getImmobilizedCharacteristics throws exception with argument
ok 143 - setImmobilizedCharacteristics throws exception with no argument
ok 144 - setImmobilizedCharacteristics throws exception with too many argument
ok 145 - setImmobilizedCharacteristics accepts undef
ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 148 - immobilizedCharacteristics->other() is a valid Bio::MAGE::Association::End
ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 150 - immobilizedCharacteristics->self() is a valid Bio::MAGE::Association::End
ok 151 - featureReporterMaps set in new()
ok 152 - setFeatureReporterMaps returns correct value
ok 153 - getFeatureReporterMaps fetches correct value
ok 154 - addFeatureReporterMaps returns number of items in list
ok 155 - addFeatureReporterMaps adds correct value
ok 156 - setFeatureReporterMaps throws exception with non-array argument
ok 157 - setFeatureReporterMaps throws exception with bad argument array
ok 158 - addFeatureReporterMaps throws exception with no arguments
ok 159 - addFeatureReporterMaps throws exception with bad array
ok 160 - setFeatureReporterMaps accepts empty array ref
ok 161 - getFeatureReporterMaps throws exception with argument
ok 162 - setFeatureReporterMaps throws exception with no argument
ok 163 - setFeatureReporterMaps throws exception with too many argument
ok 164 - setFeatureReporterMaps accepts undef
ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 167 - featureReporterMaps->other() is a valid Bio::MAGE::Association::End
ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 169 - featureReporterMaps->self() is a valid Bio::MAGE::Association::End
ok 170 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::DesignElement::DesignElement'
ok 171 - An object of class 'Bio::MAGE::DesignElement::Reporter' isa 'Bio::MAGE::DesignElement::DesignElement'
ok
t/ReporterCompositeMap.t .........
1..139
ok 1 - use Bio::MAGE::DesignElement::ReporterCompositeMap;
ok 2 - An object of class 'Bio::MAGE::DesignElement::ReporterCompositeMap' isa 'Bio::MAGE::DesignElement::ReporterCompositeMap'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - reporterPositionSources set in new()
ok 18 - setReporterPositionSources returns correct value
ok 19 - getReporterPositionSources fetches correct value
ok 20 - addReporterPositionSources returns number of items in list
ok 21 - addReporterPositionSources adds correct value
ok 22 - setReporterPositionSources throws exception with non-array argument
ok 23 - setReporterPositionSources throws exception with bad argument array
ok 24 - addReporterPositionSources throws exception with no arguments
ok 25 - addReporterPositionSources throws exception with bad array
ok 26 - setReporterPositionSources accepts empty array ref
ok 27 - getReporterPositionSources throws exception with argument
ok 28 - setReporterPositionSources throws exception with no argument
ok 29 - setReporterPositionSources throws exception with too many argument
ok 30 - setReporterPositionSources accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - reporterPositionSources->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - reporterPositionSources->self() is a valid Bio::MAGE::Association::End
ok 36 - protocolApplications set in new()
ok 37 - setProtocolApplications returns correct value
ok 38 - getProtocolApplications fetches correct value
ok 39 - addProtocolApplications returns number of items in list
ok 40 - addProtocolApplications adds correct value
ok 41 - setProtocolApplications throws exception with non-array argument
ok 42 - setProtocolApplications throws exception with bad argument array
ok 43 - addProtocolApplications throws exception with no arguments
ok 44 - addProtocolApplications throws exception with bad array
ok 45 - setProtocolApplications accepts empty array ref
ok 46 - getProtocolApplications throws exception with argument
ok 47 - setProtocolApplications throws exception with no argument
ok 48 - setProtocolApplications throws exception with too many argument
ok 49 - setProtocolApplications accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - protocolApplications->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - protocolApplications->self() is a valid Bio::MAGE::Association::End
ok 55 - descriptions set in new()
ok 56 - setDescriptions returns correct value
ok 57 - getDescriptions fetches correct value
ok 58 - addDescriptions returns number of items in list
ok 59 - addDescriptions adds correct value
ok 60 - setDescriptions throws exception with non-array argument
ok 61 - setDescriptions throws exception with bad argument array
ok 62 - addDescriptions throws exception with no arguments
ok 63 - addDescriptions throws exception with bad array
ok 64 - setDescriptions accepts empty array ref
ok 65 - getDescriptions throws exception with argument
ok 66 - setDescriptions throws exception with no argument
ok 67 - setDescriptions throws exception with too many argument
ok 68 - setDescriptions accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 74 - auditTrail set in new()
ok 75 - setAuditTrail returns correct value
ok 76 - getAuditTrail fetches correct value
ok 77 - addAuditTrail returns number of items in list
ok 78 - addAuditTrail adds correct value
ok 79 - setAuditTrail throws exception with non-array argument
ok 80 - setAuditTrail throws exception with bad argument array
ok 81 - addAuditTrail throws exception with no arguments
ok 82 - addAuditTrail throws exception with bad array
ok 83 - setAuditTrail accepts empty array ref
ok 84 - getAuditTrail throws exception with argument
ok 85 - setAuditTrail throws exception with no argument
ok 86 - setAuditTrail throws exception with too many argument
ok 87 - setAuditTrail accepts undef
ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 90 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 92 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 93 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 94 - setSecurity returns value
ok 95 - getSecurity fetches correct value
ok 96 - setSecurity throws exception with bad argument
ok 97 - getSecurity throws exception with argument
ok 98 - setSecurity throws exception with no argument
ok 99 - setSecurity throws exception with too many argument
ok 100 - setSecurity accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - security->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - security->self() is a valid Bio::MAGE::Association::End
ok 106 - propertySets set in new()
ok 107 - setPropertySets returns correct value
ok 108 - getPropertySets fetches correct value
ok 109 - addPropertySets returns number of items in list
ok 110 - addPropertySets adds correct value
ok 111 - setPropertySets throws exception with non-array argument
ok 112 - setPropertySets throws exception with bad argument array
ok 113 - addPropertySets throws exception with no arguments
ok 114 - addPropertySets throws exception with bad array
ok 115 - setPropertySets accepts empty array ref
ok 116 - getPropertySets throws exception with argument
ok 117 - setPropertySets throws exception with no argument
ok 118 - setPropertySets throws exception with too many argument
ok 119 - setPropertySets accepts undef
ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 122 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 124 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 125 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::CompositeSequence'
ok 126 - setCompositeSequence returns value
ok 127 - getCompositeSequence fetches correct value
ok 128 - setCompositeSequence throws exception with bad argument
ok 129 - getCompositeSequence throws exception with argument
ok 130 - setCompositeSequence throws exception with no argument
ok 131 - setCompositeSequence throws exception with too many argument
ok 132 - setCompositeSequence accepts undef
ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 135 - compositeSequence->other() is a valid Bio::MAGE::Association::End
ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 137 - compositeSequence->self() is a valid Bio::MAGE::Association::End
ok 138 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap'
ok 139 - An object of class 'Bio::MAGE::DesignElement::ReporterCompositeMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap'
ok
t/ReporterDimension.t ............
1..107
ok 1 - use Bio::MAGE::BioAssayData::ReporterDimension;
ok 2 - An object of class 'Bio::MAGE::BioAssayData::ReporterDimension' isa 'Bio::MAGE::BioAssayData::ReporterDimension'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - reporters set in new()
ok 18 - setReporters returns correct value
ok 19 - getReporters fetches correct value
ok 20 - addReporters returns number of items in list
ok 21 - addReporters adds correct value
ok 22 - setReporters throws exception with non-array argument
ok 23 - setReporters throws exception with bad argument array
ok 24 - addReporters throws exception with no arguments
ok 25 - addReporters throws exception with bad array
ok 26 - setReporters accepts empty array ref
ok 27 - getReporters throws exception with argument
ok 28 - setReporters throws exception with no argument
ok 29 - setReporters throws exception with too many argument
ok 30 - setReporters accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - reporters->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - reporters->self() is a valid Bio::MAGE::Association::End
ok 36 - descriptions set in new()
ok 37 - setDescriptions returns correct value
ok 38 - getDescriptions fetches correct value
ok 39 - addDescriptions returns number of items in list
ok 40 - addDescriptions adds correct value
ok 41 - setDescriptions throws exception with non-array argument
ok 42 - setDescriptions throws exception with bad argument array
ok 43 - addDescriptions throws exception with no arguments
ok 44 - addDescriptions throws exception with bad array
ok 45 - setDescriptions accepts empty array ref
ok 46 - getDescriptions throws exception with argument
ok 47 - setDescriptions throws exception with no argument
ok 48 - setDescriptions throws exception with too many argument
ok 49 - setDescriptions accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 55 - auditTrail set in new()
ok 56 - setAuditTrail returns correct value
ok 57 - getAuditTrail fetches correct value
ok 58 - addAuditTrail returns number of items in list
ok 59 - addAuditTrail adds correct value
ok 60 - setAuditTrail throws exception with non-array argument
ok 61 - setAuditTrail throws exception with bad argument array
ok 62 - addAuditTrail throws exception with no arguments
ok 63 - addAuditTrail throws exception with bad array
ok 64 - setAuditTrail accepts empty array ref
ok 65 - getAuditTrail throws exception with argument
ok 66 - setAuditTrail throws exception with no argument
ok 67 - setAuditTrail throws exception with too many argument
ok 68 - setAuditTrail accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 75 - setSecurity returns value
ok 76 - getSecurity fetches correct value
ok 77 - setSecurity throws exception with bad argument
ok 78 - getSecurity throws exception with argument
ok 79 - setSecurity throws exception with no argument
ok 80 - setSecurity throws exception with too many argument
ok 81 - setSecurity accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - security->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - security->self() is a valid Bio::MAGE::Association::End
ok 87 - propertySets set in new()
ok 88 - setPropertySets returns correct value
ok 89 - getPropertySets fetches correct value
ok 90 - addPropertySets returns number of items in list
ok 91 - addPropertySets adds correct value
ok 92 - setPropertySets throws exception with non-array argument
ok 93 - setPropertySets throws exception with bad argument array
ok 94 - addPropertySets throws exception with no arguments
ok 95 - addPropertySets throws exception with bad array
ok 96 - setPropertySets accepts empty array ref
ok 97 - getPropertySets throws exception with argument
ok 98 - setPropertySets throws exception with no argument
ok 99 - setPropertySets throws exception with too many argument
ok 100 - setPropertySets accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 106 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension'
ok 107 - An object of class 'Bio::MAGE::BioAssayData::ReporterDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension'
ok
t/ReporterGroup.t ................
1..139
ok 1 - use Bio::MAGE::ArrayDesign::ReporterGroup;
ok 2 - An object of class 'Bio::MAGE::ArrayDesign::ReporterGroup' isa 'Bio::MAGE::ArrayDesign::ReporterGroup'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - reporters set in new()
ok 18 - setReporters returns correct value
ok 19 - getReporters fetches correct value
ok 20 - addReporters returns number of items in list
ok 21 - addReporters adds correct value
ok 22 - setReporters throws exception with non-array argument
ok 23 - setReporters throws exception with bad argument array
ok 24 - addReporters throws exception with no arguments
ok 25 - addReporters throws exception with bad array
ok 26 - setReporters accepts empty array ref
ok 27 - getReporters throws exception with argument
ok 28 - setReporters throws exception with no argument
ok 29 - setReporters throws exception with too many argument
ok 30 - setReporters accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - reporters->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - reporters->self() is a valid Bio::MAGE::Association::End
ok 36 - types set in new()
ok 37 - setTypes returns correct value
ok 38 - getTypes fetches correct value
ok 39 - addTypes returns number of items in list
ok 40 - addTypes adds correct value
ok 41 - setTypes throws exception with non-array argument
ok 42 - setTypes throws exception with bad argument array
ok 43 - addTypes throws exception with no arguments
ok 44 - addTypes throws exception with bad array
ok 45 - setTypes accepts empty array ref
ok 46 - getTypes throws exception with argument
ok 47 - setTypes throws exception with no argument
ok 48 - setTypes throws exception with too many argument
ok 49 - setTypes accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - types->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - types->self() is a valid Bio::MAGE::Association::End
ok 55 - descriptions set in new()
ok 56 - setDescriptions returns correct value
ok 57 - getDescriptions fetches correct value
ok 58 - addDescriptions returns number of items in list
ok 59 - addDescriptions adds correct value
ok 60 - setDescriptions throws exception with non-array argument
ok 61 - setDescriptions throws exception with bad argument array
ok 62 - addDescriptions throws exception with no arguments
ok 63 - addDescriptions throws exception with bad array
ok 64 - setDescriptions accepts empty array ref
ok 65 - getDescriptions throws exception with argument
ok 66 - setDescriptions throws exception with no argument
ok 67 - setDescriptions throws exception with too many argument
ok 68 - setDescriptions accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 74 - auditTrail set in new()
ok 75 - setAuditTrail returns correct value
ok 76 - getAuditTrail fetches correct value
ok 77 - addAuditTrail returns number of items in list
ok 78 - addAuditTrail adds correct value
ok 79 - setAuditTrail throws exception with non-array argument
ok 80 - setAuditTrail throws exception with bad argument array
ok 81 - addAuditTrail throws exception with no arguments
ok 82 - addAuditTrail throws exception with bad array
ok 83 - setAuditTrail accepts empty array ref
ok 84 - getAuditTrail throws exception with argument
ok 85 - setAuditTrail throws exception with no argument
ok 86 - setAuditTrail throws exception with too many argument
ok 87 - setAuditTrail accepts undef
ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 90 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 92 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 93 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 94 - setSecurity returns value
ok 95 - getSecurity fetches correct value
ok 96 - setSecurity throws exception with bad argument
ok 97 - getSecurity throws exception with argument
ok 98 - setSecurity throws exception with no argument
ok 99 - setSecurity throws exception with too many argument
ok 100 - setSecurity accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - security->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - security->self() is a valid Bio::MAGE::Association::End
ok 106 - propertySets set in new()
ok 107 - setPropertySets returns correct value
ok 108 - getPropertySets fetches correct value
ok 109 - addPropertySets returns number of items in list
ok 110 - addPropertySets adds correct value
ok 111 - setPropertySets throws exception with non-array argument
ok 112 - setPropertySets throws exception with bad argument array
ok 113 - addPropertySets throws exception with no arguments
ok 114 - addPropertySets throws exception with bad array
ok 115 - setPropertySets accepts empty array ref
ok 116 - getPropertySets throws exception with argument
ok 117 - setPropertySets throws exception with no argument
ok 118 - setPropertySets throws exception with too many argument
ok 119 - setPropertySets accepts undef
ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 122 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 124 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 125 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 126 - setSpecies returns value
ok 127 - getSpecies fetches correct value
ok 128 - setSpecies throws exception with bad argument
ok 129 - getSpecies throws exception with argument
ok 130 - setSpecies throws exception with no argument
ok 131 - setSpecies throws exception with too many argument
ok 132 - setSpecies accepts undef
ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 135 - species->other() is a valid Bio::MAGE::Association::End
ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 137 - species->self() is a valid Bio::MAGE::Association::End
ok 138 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup'
ok 139 - An object of class 'Bio::MAGE::ArrayDesign::ReporterGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup'
ok
t/ReporterPosition.t .............
1..69
ok 1 - use Bio::MAGE::DesignElement::ReporterPosition;
ok 2 - An object of class 'Bio::MAGE::DesignElement::ReporterPosition' isa 'Bio::MAGE::DesignElement::ReporterPosition'
ok 3 - package
ok 4 - class_name
ok 5 - end new
ok 6 - end getter/setter
ok 7 - end getter throws exception with argument
ok 8 - end setter throws exception with no argument
ok 9 - end setter throws exception with too many argument
ok 10 - end setter accepts undef
ok 11 - start new
ok 12 - start getter/setter
ok 13 - start getter throws exception with argument
ok 14 - start setter throws exception with no argument
ok 15 - start setter throws exception with too many argument
ok 16 - start setter accepts undef
ok 17 - propertySets set in new()
ok 18 - setPropertySets returns correct value
ok 19 - getPropertySets fetches correct value
ok 20 - addPropertySets returns number of items in list
ok 21 - addPropertySets adds correct value
ok 22 - setPropertySets throws exception with non-array argument
ok 23 - setPropertySets throws exception with bad argument array
ok 24 - addPropertySets throws exception with no arguments
ok 25 - addPropertySets throws exception with bad array
ok 26 - setPropertySets accepts empty array ref
ok 27 - getPropertySets throws exception with argument
ok 28 - setPropertySets throws exception with no argument
ok 29 - setPropertySets throws exception with too many argument
ok 30 - setPropertySets accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 36 - An object of class 'Bio::MAGE::DesignElement::Reporter' isa 'Bio::MAGE::DesignElement::Reporter'
ok 37 - setReporter returns value
ok 38 - getReporter fetches correct value
ok 39 - setReporter throws exception with bad argument
ok 40 - getReporter throws exception with argument
ok 41 - setReporter throws exception with no argument
ok 42 - setReporter throws exception with too many argument
ok 43 - setReporter accepts undef
ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 46 - reporter->other() is a valid Bio::MAGE::Association::End
ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 48 - reporter->self() is a valid Bio::MAGE::Association::End
ok 49 - mismatchInformation set in new()
ok 50 - setMismatchInformation returns correct value
ok 51 - getMismatchInformation fetches correct value
ok 52 - addMismatchInformation returns number of items in list
ok 53 - addMismatchInformation adds correct value
ok 54 - setMismatchInformation throws exception with non-array argument
ok 55 - setMismatchInformation throws exception with bad argument array
ok 56 - addMismatchInformation throws exception with no arguments
ok 57 - addMismatchInformation throws exception with bad array
ok 58 - setMismatchInformation accepts empty array ref
ok 59 - getMismatchInformation throws exception with argument
ok 60 - setMismatchInformation throws exception with no argument
ok 61 - setMismatchInformation throws exception with too many argument
ok 62 - setMismatchInformation accepts undef
ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 65 - mismatchInformation->other() is a valid Bio::MAGE::Association::End
ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 67 - mismatchInformation->self() is a valid Bio::MAGE::Association::End
ok 68 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::BioSequence::SequencePosition'
ok 69 - An object of class 'Bio::MAGE::DesignElement::ReporterPosition' isa 'Bio::MAGE::BioSequence::SequencePosition'
ok
t/Security.t .....................
1..126
ok 1 - use Bio::MAGE::AuditAndSecurity::Security;
ok 2 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - owner set in new()
ok 18 - setOwner returns correct value
ok 19 - getOwner fetches correct value
ok 20 - addOwner returns number of items in list
ok 21 - addOwner adds correct value
ok 22 - setOwner throws exception with non-array argument
ok 23 - setOwner throws exception with bad argument array
ok 24 - addOwner throws exception with no arguments
ok 25 - addOwner throws exception with bad array
ok 26 - setOwner accepts empty array ref
ok 27 - getOwner throws exception with argument
ok 28 - setOwner throws exception with no argument
ok 29 - setOwner throws exception with too many argument
ok 30 - setOwner accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - owner->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - owner->self() is a valid Bio::MAGE::Association::End
ok 36 - descriptions set in new()
ok 37 - setDescriptions returns correct value
ok 38 - getDescriptions fetches correct value
ok 39 - addDescriptions returns number of items in list
ok 40 - addDescriptions adds correct value
ok 41 - setDescriptions throws exception with non-array argument
ok 42 - setDescriptions throws exception with bad argument array
ok 43 - addDescriptions throws exception with no arguments
ok 44 - addDescriptions throws exception with bad array
ok 45 - setDescriptions accepts empty array ref
ok 46 - getDescriptions throws exception with argument
ok 47 - setDescriptions throws exception with no argument
ok 48 - setDescriptions throws exception with too many argument
ok 49 - setDescriptions accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 56 - setSecurity returns value
ok 57 - getSecurity fetches correct value
ok 58 - setSecurity throws exception with bad argument
ok 59 - getSecurity throws exception with argument
ok 60 - setSecurity throws exception with no argument
ok 61 - setSecurity throws exception with too many argument
ok 62 - setSecurity accepts undef
ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 65 - security->other() is a valid Bio::MAGE::Association::End
ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 67 - security->self() is a valid Bio::MAGE::Association::End
ok 68 - auditTrail set in new()
ok 69 - setAuditTrail returns correct value
ok 70 - getAuditTrail fetches correct value
ok 71 - addAuditTrail returns number of items in list
ok 72 - addAuditTrail adds correct value
ok 73 - setAuditTrail throws exception with non-array argument
ok 74 - setAuditTrail throws exception with bad argument array
ok 75 - addAuditTrail throws exception with no arguments
ok 76 - addAuditTrail throws exception with bad array
ok 77 - setAuditTrail accepts empty array ref
ok 78 - getAuditTrail throws exception with argument
ok 79 - setAuditTrail throws exception with no argument
ok 80 - setAuditTrail throws exception with too many argument
ok 81 - setAuditTrail accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 87 - propertySets set in new()
ok 88 - setPropertySets returns correct value
ok 89 - getPropertySets fetches correct value
ok 90 - addPropertySets returns number of items in list
ok 91 - addPropertySets adds correct value
ok 92 - setPropertySets throws exception with non-array argument
ok 93 - setPropertySets throws exception with bad argument array
ok 94 - addPropertySets throws exception with no arguments
ok 95 - addPropertySets throws exception with bad array
ok 96 - setPropertySets accepts empty array ref
ok 97 - getPropertySets throws exception with argument
ok 98 - setPropertySets throws exception with no argument
ok 99 - setPropertySets throws exception with too many argument
ok 100 - setPropertySets accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 106 - securityGroups set in new()
ok 107 - setSecurityGroups returns correct value
ok 108 - getSecurityGroups fetches correct value
ok 109 - addSecurityGroups returns number of items in list
ok 110 - addSecurityGroups adds correct value
ok 111 - setSecurityGroups throws exception with non-array argument
ok 112 - setSecurityGroups throws exception with bad argument array
ok 113 - addSecurityGroups throws exception with no arguments
ok 114 - addSecurityGroups throws exception with bad array
ok 115 - setSecurityGroups accepts empty array ref
ok 116 - getSecurityGroups throws exception with argument
ok 117 - setSecurityGroups throws exception with no argument
ok 118 - setSecurityGroups throws exception with too many argument
ok 119 - setSecurityGroups accepts undef
ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 122 - securityGroups->other() is a valid Bio::MAGE::Association::End
ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 124 - securityGroups->self() is a valid Bio::MAGE::Association::End
ok 125 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 126 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::Identifiable'
ok
t/SecurityGroup.t ................
1..107
ok 1 - use Bio::MAGE::AuditAndSecurity::SecurityGroup;
ok 2 - An object of class 'Bio::MAGE::AuditAndSecurity::SecurityGroup' isa 'Bio::MAGE::AuditAndSecurity::SecurityGroup'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - members set in new()
ok 18 - setMembers returns correct value
ok 19 - getMembers fetches correct value
ok 20 - addMembers returns number of items in list
ok 21 - addMembers adds correct value
ok 22 - setMembers throws exception with non-array argument
ok 23 - setMembers throws exception with bad argument array
ok 24 - addMembers throws exception with no arguments
ok 25 - addMembers throws exception with bad array
ok 26 - setMembers accepts empty array ref
ok 27 - getMembers throws exception with argument
ok 28 - setMembers throws exception with no argument
ok 29 - setMembers throws exception with too many argument
ok 30 - setMembers accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - members->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - members->self() is a valid Bio::MAGE::Association::End
ok 36 - descriptions set in new()
ok 37 - setDescriptions returns correct value
ok 38 - getDescriptions fetches correct value
ok 39 - addDescriptions returns number of items in list
ok 40 - addDescriptions adds correct value
ok 41 - setDescriptions throws exception with non-array argument
ok 42 - setDescriptions throws exception with bad argument array
ok 43 - addDescriptions throws exception with no arguments
ok 44 - addDescriptions throws exception with bad array
ok 45 - setDescriptions accepts empty array ref
ok 46 - getDescriptions throws exception with argument
ok 47 - setDescriptions throws exception with no argument
ok 48 - setDescriptions throws exception with too many argument
ok 49 - setDescriptions accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 56 - setSecurity returns value
ok 57 - getSecurity fetches correct value
ok 58 - setSecurity throws exception with bad argument
ok 59 - getSecurity throws exception with argument
ok 60 - setSecurity throws exception with no argument
ok 61 - setSecurity throws exception with too many argument
ok 62 - setSecurity accepts undef
ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 65 - security->other() is a valid Bio::MAGE::Association::End
ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 67 - security->self() is a valid Bio::MAGE::Association::End
ok 68 - auditTrail set in new()
ok 69 - setAuditTrail returns correct value
ok 70 - getAuditTrail fetches correct value
ok 71 - addAuditTrail returns number of items in list
ok 72 - addAuditTrail adds correct value
ok 73 - setAuditTrail throws exception with non-array argument
ok 74 - setAuditTrail throws exception with bad argument array
ok 75 - addAuditTrail throws exception with no arguments
ok 76 - addAuditTrail throws exception with bad array
ok 77 - setAuditTrail accepts empty array ref
ok 78 - getAuditTrail throws exception with argument
ok 79 - setAuditTrail throws exception with no argument
ok 80 - setAuditTrail throws exception with too many argument
ok 81 - setAuditTrail accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 87 - propertySets set in new()
ok 88 - setPropertySets returns correct value
ok 89 - getPropertySets fetches correct value
ok 90 - addPropertySets returns number of items in list
ok 91 - addPropertySets adds correct value
ok 92 - setPropertySets throws exception with non-array argument
ok 93 - setPropertySets throws exception with bad argument array
ok 94 - addPropertySets throws exception with no arguments
ok 95 - addPropertySets throws exception with bad array
ok 96 - setPropertySets accepts empty array ref
ok 97 - getPropertySets throws exception with argument
ok 98 - setPropertySets throws exception with no argument
ok 99 - setPropertySets throws exception with too many argument
ok 100 - setPropertySets accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 106 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 107 - An object of class 'Bio::MAGE::AuditAndSecurity::SecurityGroup' isa 'Bio::MAGE::Identifiable'
ok
t/SeqFeature.t ...................
1..107
ok 1 - use Bio::MAGE::BioSequence::SeqFeature;
ok 2 - An object of class 'Bio::MAGE::BioSequence::SeqFeature' isa 'Bio::MAGE::BioSequence::SeqFeature'
ok 3 - package
ok 4 - class_name
ok 5 - basis new
ok 6 - basis getter/setter
ok 7 - basis getter throws exception with argument
ok 8 - basis setter throws exception with no argument
ok 9 - basis setter throws exception with too many argument
ok 10 - basis setter accepts undef
ok 11 - basis setter throws exception with bad argument
ok 12 - basis accepts experimental
ok 13 - basis accepts computational
ok 14 - basis accepts both
ok 15 - basis accepts unknown
ok 16 - basis accepts NA
ok 17 - regions set in new()
ok 18 - setRegions returns correct value
ok 19 - getRegions fetches correct value
ok 20 - addRegions returns number of items in list
ok 21 - addRegions adds correct value
ok 22 - setRegions throws exception with non-array argument
ok 23 - setRegions throws exception with bad argument array
ok 24 - addRegions throws exception with no arguments
ok 25 - addRegions throws exception with bad array
ok 26 - setRegions accepts empty array ref
ok 27 - getRegions throws exception with argument
ok 28 - setRegions throws exception with no argument
ok 29 - setRegions throws exception with too many argument
ok 30 - setRegions accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - regions->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - regions->self() is a valid Bio::MAGE::Association::End
ok 36 - descriptions set in new()
ok 37 - setDescriptions returns correct value
ok 38 - getDescriptions fetches correct value
ok 39 - addDescriptions returns number of items in list
ok 40 - addDescriptions adds correct value
ok 41 - setDescriptions throws exception with non-array argument
ok 42 - setDescriptions throws exception with bad argument array
ok 43 - addDescriptions throws exception with no arguments
ok 44 - addDescriptions throws exception with bad array
ok 45 - setDescriptions accepts empty array ref
ok 46 - getDescriptions throws exception with argument
ok 47 - setDescriptions throws exception with no argument
ok 48 - setDescriptions throws exception with too many argument
ok 49 - setDescriptions accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 55 - auditTrail set in new()
ok 56 - setAuditTrail returns correct value
ok 57 - getAuditTrail fetches correct value
ok 58 - addAuditTrail returns number of items in list
ok 59 - addAuditTrail adds correct value
ok 60 - setAuditTrail throws exception with non-array argument
ok 61 - setAuditTrail throws exception with bad argument array
ok 62 - addAuditTrail throws exception with no arguments
ok 63 - addAuditTrail throws exception with bad array
ok 64 - setAuditTrail accepts empty array ref
ok 65 - getAuditTrail throws exception with argument
ok 66 - setAuditTrail throws exception with no argument
ok 67 - setAuditTrail throws exception with too many argument
ok 68 - setAuditTrail accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 75 - setSecurity returns value
ok 76 - getSecurity fetches correct value
ok 77 - setSecurity throws exception with bad argument
ok 78 - getSecurity throws exception with argument
ok 79 - setSecurity throws exception with no argument
ok 80 - setSecurity throws exception with too many argument
ok 81 - setSecurity accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - security->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - security->self() is a valid Bio::MAGE::Association::End
ok 87 - propertySets set in new()
ok 88 - setPropertySets returns correct value
ok 89 - getPropertySets fetches correct value
ok 90 - addPropertySets returns number of items in list
ok 91 - addPropertySets adds correct value
ok 92 - setPropertySets throws exception with non-array argument
ok 93 - setPropertySets throws exception with bad argument array
ok 94 - addPropertySets throws exception with no arguments
ok 95 - addPropertySets throws exception with bad array
ok 96 - setPropertySets accepts empty array ref
ok 97 - getPropertySets throws exception with argument
ok 98 - setPropertySets throws exception with no argument
ok 99 - setPropertySets throws exception with too many argument
ok 100 - setPropertySets accepts undef
ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 106 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable'
ok 107 - An object of class 'Bio::MAGE::BioSequence::SeqFeature' isa 'Bio::MAGE::Describable'
ok
t/SeqFeatureLocation.t ...........
1..63
ok 1 - use Bio::MAGE::BioSequence::SeqFeatureLocation;
ok 2 - An object of class 'Bio::MAGE::BioSequence::SeqFeatureLocation' isa 'Bio::MAGE::BioSequence::SeqFeatureLocation'
ok 3 - package
ok 4 - class_name
ok 5 - strandType new
ok 6 - strandType getter/setter
ok 7 - strandType getter throws exception with argument
ok 8 - strandType setter throws exception with no argument
ok 9 - strandType setter throws exception with too many argument
ok 10 - strandType setter accepts undef
ok 11 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::BioSequence::SequencePosition'
ok 12 - setCoordinate returns value
ok 13 - getCoordinate fetches correct value
ok 14 - setCoordinate throws exception with bad argument
ok 15 - getCoordinate throws exception with argument
ok 16 - setCoordinate throws exception with no argument
ok 17 - setCoordinate throws exception with too many argument
ok 18 - setCoordinate accepts undef
ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 21 - coordinate->other() is a valid Bio::MAGE::Association::End
ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 23 - coordinate->self() is a valid Bio::MAGE::Association::End
ok 24 - subregions set in new()
ok 25 - setSubregions returns correct value
ok 26 - getSubregions fetches correct value
ok 27 - addSubregions returns number of items in list
ok 28 - addSubregions adds correct value
ok 29 - setSubregions throws exception with non-array argument
ok 30 - setSubregions throws exception with bad argument array
ok 31 - addSubregions throws exception with no arguments
ok 32 - addSubregions throws exception with bad array
ok 33 - setSubregions accepts empty array ref
ok 34 - getSubregions throws exception with argument
ok 35 - setSubregions throws exception with no argument
ok 36 - setSubregions throws exception with too many argument
ok 37 - setSubregions accepts undef
ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 40 - subregions->other() is a valid Bio::MAGE::Association::End
ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 42 - subregions->self() is a valid Bio::MAGE::Association::End
ok 43 - propertySets set in new()
ok 44 - setPropertySets returns correct value
ok 45 - getPropertySets fetches correct value
ok 46 - addPropertySets returns number of items in list
ok 47 - addPropertySets adds correct value
ok 48 - setPropertySets throws exception with non-array argument
ok 49 - setPropertySets throws exception with bad argument array
ok 50 - addPropertySets throws exception with no arguments
ok 51 - addPropertySets throws exception with bad array
ok 52 - setPropertySets accepts empty array ref
ok 53 - getPropertySets throws exception with argument
ok 54 - setPropertySets throws exception with no argument
ok 55 - setPropertySets throws exception with too many argument
ok 56 - setPropertySets accepts undef
ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 59 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 61 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 62 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable'
ok 63 - An object of class 'Bio::MAGE::BioSequence::SeqFeatureLocation' isa 'Bio::MAGE::Extendable'
ok
t/SequencePosition.t .............
1..41
ok 1 - use Bio::MAGE::BioSequence::SequencePosition;
ok 2 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::BioSequence::SequencePosition'
ok 3 - package
ok 4 - class_name
ok 5 - start new
ok 6 - start getter/setter
ok 7 - start getter throws exception with argument
ok 8 - start setter throws exception with no argument
ok 9 - start setter throws exception with too many argument
ok 10 - start setter accepts undef
ok 11 - end new
ok 12 - end getter/setter
ok 13 - end getter throws exception with argument
ok 14 - end setter throws exception with no argument
ok 15 - end setter throws exception with too many argument
ok 16 - end setter accepts undef
ok 17 - propertySets set in new()
ok 18 - setPropertySets returns correct value
ok 19 - getPropertySets fetches correct value
ok 20 - addPropertySets returns number of items in list
ok 21 - addPropertySets adds correct value
ok 22 - setPropertySets throws exception with non-array argument
ok 23 - setPropertySets throws exception with bad argument array
ok 24 - addPropertySets throws exception with no arguments
ok 25 - addPropertySets throws exception with bad array
ok 26 - setPropertySets accepts empty array ref
ok 27 - getPropertySets throws exception with argument
ok 28 - setPropertySets throws exception with no argument
ok 29 - setPropertySets throws exception with too many argument
ok 30 - setPropertySets accepts undef
ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 33 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 35 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 36 - An object of class 'Bio::MAGE::DesignElement::ReporterPosition' isa 'Bio::MAGE::DesignElement::ReporterPosition'
ok 37 - An object of class 'Bio::MAGE::DesignElement::ReporterPosition' isa 'Bio::MAGE::BioSequence::SequencePosition'
ok 38 - An object of class 'Bio::MAGE::DesignElement::CompositePosition' isa 'Bio::MAGE::DesignElement::CompositePosition'
ok 39 - An object of class 'Bio::MAGE::DesignElement::CompositePosition' isa 'Bio::MAGE::BioSequence::SequencePosition'
ok 40 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable'
ok 41 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::Extendable'
ok
t/Software.t .....................
1..177
ok 1 - use Bio::MAGE::Protocol::Software;
ok 2 - An object of class 'Bio::MAGE::Protocol::Software' isa 'Bio::MAGE::Protocol::Software'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - URI new
ok 12 - URI getter/setter
ok 13 - URI getter throws exception with argument
ok 14 - URI setter throws exception with no argument
ok 15 - URI setter throws exception with too many argument
ok 16 - URI setter accepts undef
ok 17 - name new
ok 18 - name getter/setter
ok 19 - name getter throws exception with argument
ok 20 - name setter throws exception with no argument
ok 21 - name setter throws exception with too many argument
ok 22 - name setter accepts undef
ok 23 - softwareManufacturers set in new()
ok 24 - setSoftwareManufacturers returns correct value
ok 25 - getSoftwareManufacturers fetches correct value
ok 26 - addSoftwareManufacturers returns number of items in list
ok 27 - addSoftwareManufacturers adds correct value
ok 28 - setSoftwareManufacturers throws exception with non-array argument
ok 29 - setSoftwareManufacturers throws exception with bad argument array
ok 30 - addSoftwareManufacturers throws exception with no arguments
ok 31 - addSoftwareManufacturers throws exception with bad array
ok 32 - setSoftwareManufacturers accepts empty array ref
ok 33 - getSoftwareManufacturers throws exception with argument
ok 34 - setSoftwareManufacturers throws exception with no argument
ok 35 - setSoftwareManufacturers throws exception with too many argument
ok 36 - setSoftwareManufacturers accepts undef
ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 39 - softwareManufacturers->other() is a valid Bio::MAGE::Association::End
ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 41 - softwareManufacturers->self() is a valid Bio::MAGE::Association::End
ok 42 - parameterTypes set in new()
ok 43 - setParameterTypes returns correct value
ok 44 - getParameterTypes fetches correct value
ok 45 - addParameterTypes returns number of items in list
ok 46 - addParameterTypes adds correct value
ok 47 - setParameterTypes throws exception with non-array argument
ok 48 - setParameterTypes throws exception with bad argument array
ok 49 - addParameterTypes throws exception with no arguments
ok 50 - addParameterTypes throws exception with bad array
ok 51 - setParameterTypes accepts empty array ref
ok 52 - getParameterTypes throws exception with argument
ok 53 - setParameterTypes throws exception with no argument
ok 54 - setParameterTypes throws exception with too many argument
ok 55 - setParameterTypes accepts undef
ok 56 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 57 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 58 - parameterTypes->other() is a valid Bio::MAGE::Association::End
ok 59 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 60 - parameterTypes->self() is a valid Bio::MAGE::Association::End
ok 61 - auditTrail set in new()
ok 62 - setAuditTrail returns correct value
ok 63 - getAuditTrail fetches correct value
ok 64 - addAuditTrail returns number of items in list
ok 65 - addAuditTrail adds correct value
ok 66 - setAuditTrail throws exception with non-array argument
ok 67 - setAuditTrail throws exception with bad argument array
ok 68 - addAuditTrail throws exception with no arguments
ok 69 - addAuditTrail throws exception with bad array
ok 70 - setAuditTrail accepts empty array ref
ok 71 - getAuditTrail throws exception with argument
ok 72 - setAuditTrail throws exception with no argument
ok 73 - setAuditTrail throws exception with too many argument
ok 74 - setAuditTrail accepts undef
ok 75 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 76 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 77 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 79 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 80 - propertySets set in new()
ok 81 - setPropertySets returns correct value
ok 82 - getPropertySets fetches correct value
ok 83 - addPropertySets returns number of items in list
ok 84 - addPropertySets adds correct value
ok 85 - setPropertySets throws exception with non-array argument
ok 86 - setPropertySets throws exception with bad argument array
ok 87 - addPropertySets throws exception with no arguments
ok 88 - addPropertySets throws exception with bad array
ok 89 - setPropertySets accepts empty array ref
ok 90 - getPropertySets throws exception with argument
ok 91 - setPropertySets throws exception with no argument
ok 92 - setPropertySets throws exception with too many argument
ok 93 - setPropertySets accepts undef
ok 94 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 95 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 96 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 98 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 99 - descriptions set in new()
ok 100 - setDescriptions returns correct value
ok 101 - getDescriptions fetches correct value
ok 102 - addDescriptions returns number of items in list
ok 103 - addDescriptions adds correct value
ok 104 - setDescriptions throws exception with non-array argument
ok 105 - setDescriptions throws exception with bad argument array
ok 106 - addDescriptions throws exception with no arguments
ok 107 - addDescriptions throws exception with bad array
ok 108 - setDescriptions accepts empty array ref
ok 109 - getDescriptions throws exception with argument
ok 110 - setDescriptions throws exception with no argument
ok 111 - setDescriptions throws exception with too many argument
ok 112 - setDescriptions accepts undef
ok 113 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 114 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 115 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 117 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 118 - softwares set in new()
ok 119 - setSoftwares returns correct value
ok 120 - getSoftwares fetches correct value
ok 121 - addSoftwares returns number of items in list
ok 122 - addSoftwares adds correct value
ok 123 - setSoftwares throws exception with non-array argument
ok 124 - setSoftwares throws exception with bad argument array
ok 125 - addSoftwares throws exception with no arguments
ok 126 - addSoftwares throws exception with bad array
ok 127 - setSoftwares accepts empty array ref
ok 128 - getSoftwares throws exception with argument
ok 129 - setSoftwares throws exception with no argument
ok 130 - setSoftwares throws exception with too many argument
ok 131 - setSoftwares accepts undef
ok 132 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 133 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 134 - softwares->other() is a valid Bio::MAGE::Association::End
ok 135 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 136 - softwares->self() is a valid Bio::MAGE::Association::End
ok 137 - An object of class 'Bio::MAGE::Protocol::Hardware' isa 'Bio::MAGE::Protocol::Hardware'
ok 138 - setHardware returns value
ok 139 - getHardware fetches correct value
ok 140 - setHardware throws exception with bad argument
ok 141 - getHardware throws exception with argument
ok 142 - setHardware throws exception with no argument
ok 143 - setHardware throws exception with too many argument
ok 144 - setHardware accepts undef
ok 145 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 146 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 147 - hardware->other() is a valid Bio::MAGE::Association::End
ok 148 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 149 - hardware->self() is a valid Bio::MAGE::Association::End
ok 150 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 151 - setSecurity returns value
ok 152 - getSecurity fetches correct value
ok 153 - setSecurity throws exception with bad argument
ok 154 - getSecurity throws exception with argument
ok 155 - setSecurity throws exception with no argument
ok 156 - setSecurity throws exception with too many argument
ok 157 - setSecurity accepts undef
ok 158 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 159 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 160 - security->other() is a valid Bio::MAGE::Association::End
ok 161 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 162 - security->self() is a valid Bio::MAGE::Association::End
ok 163 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 164 - setType returns value
ok 165 - getType fetches correct value
ok 166 - setType throws exception with bad argument
ok 167 - getType throws exception with argument
ok 168 - setType throws exception with no argument
ok 169 - setType throws exception with too many argument
ok 170 - setType accepts undef
ok 171 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 172 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 173 - type->other() is a valid Bio::MAGE::Association::End
ok 174 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 175 - type->self() is a valid Bio::MAGE::Association::End
ok 176 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Protocol::Parameterizable'
ok 177 - An object of class 'Bio::MAGE::Protocol::Software' isa 'Bio::MAGE::Protocol::Parameterizable'
ok
t/SoftwareApplication.t ..........
1..120
ok 1 - use Bio::MAGE::Protocol::SoftwareApplication;
ok 2 - An object of class 'Bio::MAGE::Protocol::SoftwareApplication' isa 'Bio::MAGE::Protocol::SoftwareApplication'
ok 3 - package
ok 4 - class_name
ok 5 - releaseDate new
ok 6 - releaseDate getter/setter
ok 7 - releaseDate getter throws exception with argument
ok 8 - releaseDate setter throws exception with no argument
ok 9 - releaseDate setter throws exception with too many argument
ok 10 - releaseDate setter accepts undef
ok 11 - version new
ok 12 - version getter/setter
ok 13 - version getter throws exception with argument
ok 14 - version setter throws exception with no argument
ok 15 - version setter throws exception with too many argument
ok 16 - version setter accepts undef
ok 17 - An object of class 'Bio::MAGE::Protocol::Software' isa 'Bio::MAGE::Protocol::Software'
ok 18 - setSoftware returns value
ok 19 - getSoftware fetches correct value
ok 20 - setSoftware throws exception with bad argument
ok 21 - getSoftware throws exception with argument
ok 22 - setSoftware throws exception with no argument
ok 23 - setSoftware throws exception with too many argument
ok 24 - setSoftware accepts undef
ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 27 - software->other() is a valid Bio::MAGE::Association::End
ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 29 - software->self() is a valid Bio::MAGE::Association::End
ok 30 - descriptions set in new()
ok 31 - setDescriptions returns correct value
ok 32 - getDescriptions fetches correct value
ok 33 - addDescriptions returns number of items in list
ok 34 - addDescriptions adds correct value
ok 35 - setDescriptions throws exception with non-array argument
ok 36 - setDescriptions throws exception with bad argument array
ok 37 - addDescriptions throws exception with no arguments
ok 38 - addDescriptions throws exception with bad array
ok 39 - setDescriptions accepts empty array ref
ok 40 - getDescriptions throws exception with argument
ok 41 - setDescriptions throws exception with no argument
ok 42 - setDescriptions throws exception with too many argument
ok 43 - setDescriptions accepts undef
ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 46 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 48 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 49 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 50 - setSecurity returns value
ok 51 - getSecurity fetches correct value
ok 52 - setSecurity throws exception with bad argument
ok 53 - getSecurity throws exception with argument
ok 54 - setSecurity throws exception with no argument
ok 55 - setSecurity throws exception with too many argument
ok 56 - setSecurity accepts undef
ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 59 - security->other() is a valid Bio::MAGE::Association::End
ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 61 - security->self() is a valid Bio::MAGE::Association::End
ok 62 - auditTrail set in new()
ok 63 - setAuditTrail returns correct value
ok 64 - getAuditTrail fetches correct value
ok 65 - addAuditTrail returns number of items in list
ok 66 - addAuditTrail adds correct value
ok 67 - setAuditTrail throws exception with non-array argument
ok 68 - setAuditTrail throws exception with bad argument array
ok 69 - addAuditTrail throws exception with no arguments
ok 70 - addAuditTrail throws exception with bad array
ok 71 - setAuditTrail accepts empty array ref
ok 72 - getAuditTrail throws exception with argument
ok 73 - setAuditTrail throws exception with no argument
ok 74 - setAuditTrail throws exception with too many argument
ok 75 - setAuditTrail accepts undef
ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 78 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 80 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 81 - propertySets set in new()
ok 82 - setPropertySets returns correct value
ok 83 - getPropertySets fetches correct value
ok 84 - addPropertySets returns number of items in list
ok 85 - addPropertySets adds correct value
ok 86 - setPropertySets throws exception with non-array argument
ok 87 - setPropertySets throws exception with bad argument array
ok 88 - addPropertySets throws exception with no arguments
ok 89 - addPropertySets throws exception with bad array
ok 90 - setPropertySets accepts empty array ref
ok 91 - getPropertySets throws exception with argument
ok 92 - setPropertySets throws exception with no argument
ok 93 - setPropertySets throws exception with too many argument
ok 94 - setPropertySets accepts undef
ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 97 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 99 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 100 - parameterValues set in new()
ok 101 - setParameterValues returns correct value
ok 102 - getParameterValues fetches correct value
ok 103 - addParameterValues returns number of items in list
ok 104 - addParameterValues adds correct value
ok 105 - setParameterValues throws exception with non-array argument
ok 106 - setParameterValues throws exception with bad argument array
ok 107 - addParameterValues throws exception with no arguments
ok 108 - addParameterValues throws exception with bad array
ok 109 - setParameterValues accepts empty array ref
ok 110 - getParameterValues throws exception with argument
ok 111 - setParameterValues throws exception with no argument
ok 112 - setParameterValues throws exception with too many argument
ok 113 - setParameterValues accepts undef
ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 116 - parameterValues->other() is a valid Bio::MAGE::Association::End
ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 118 - parameterValues->self() is a valid Bio::MAGE::Association::End
ok 119 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication'
ok 120 - An object of class 'Bio::MAGE::Protocol::SoftwareApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication'
ok
t/SpecializedQuantitationType.t ..
1..171
ok 1 - use Bio::MAGE::QuantitationType::SpecializedQuantitationType;
ok 2 - An object of class 'Bio::MAGE::QuantitationType::SpecializedQuantitationType' isa 'Bio::MAGE::QuantitationType::SpecializedQuantitationType'
ok 3 - package
ok 4 - class_name
ok 5 - isBackground new
ok 6 - isBackground getter/setter
ok 7 - isBackground getter throws exception with argument
ok 8 - isBackground setter throws exception with no argument
ok 9 - isBackground setter throws exception with too many argument
ok 10 - isBackground setter accepts undef
ok 11 - identifier new
ok 12 - identifier getter/setter
ok 13 - identifier getter throws exception with argument
ok 14 - identifier setter throws exception with no argument
ok 15 - identifier setter throws exception with too many argument
ok 16 - identifier setter accepts undef
ok 17 - name new
ok 18 - name getter/setter
ok 19 - name getter throws exception with argument
ok 20 - name setter throws exception with no argument
ok 21 - name setter throws exception with too many argument
ok 22 - name setter accepts undef
ok 23 - descriptions set in new()
ok 24 - setDescriptions returns correct value
ok 25 - getDescriptions fetches correct value
ok 26 - addDescriptions returns number of items in list
ok 27 - addDescriptions adds correct value
ok 28 - setDescriptions throws exception with non-array argument
ok 29 - setDescriptions throws exception with bad argument array
ok 30 - addDescriptions throws exception with no arguments
ok 31 - addDescriptions throws exception with bad array
ok 32 - setDescriptions accepts empty array ref
ok 33 - getDescriptions throws exception with argument
ok 34 - setDescriptions throws exception with no argument
ok 35 - setDescriptions throws exception with too many argument
ok 36 - setDescriptions accepts undef
ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 39 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 41 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 42 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 43 - setDataType returns value
ok 44 - getDataType fetches correct value
ok 45 - setDataType throws exception with bad argument
ok 46 - getDataType throws exception with argument
ok 47 - setDataType throws exception with no argument
ok 48 - setDataType throws exception with too many argument
ok 49 - setDataType accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - dataType->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - dataType->self() is a valid Bio::MAGE::Association::End
ok 55 - auditTrail set in new()
ok 56 - setAuditTrail returns correct value
ok 57 - getAuditTrail fetches correct value
ok 58 - addAuditTrail returns number of items in list
ok 59 - addAuditTrail adds correct value
ok 60 - setAuditTrail throws exception with non-array argument
ok 61 - setAuditTrail throws exception with bad argument array
ok 62 - addAuditTrail throws exception with no arguments
ok 63 - addAuditTrail throws exception with bad array
ok 64 - setAuditTrail accepts empty array ref
ok 65 - getAuditTrail throws exception with argument
ok 66 - setAuditTrail throws exception with no argument
ok 67 - setAuditTrail throws exception with too many argument
ok 68 - setAuditTrail accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 75 - setSecurity returns value
ok 76 - getSecurity fetches correct value
ok 77 - setSecurity throws exception with bad argument
ok 78 - getSecurity throws exception with argument
ok 79 - setSecurity throws exception with no argument
ok 80 - setSecurity throws exception with too many argument
ok 81 - setSecurity accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - security->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - security->self() is a valid Bio::MAGE::Association::End
ok 87 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 88 - setScale returns value
ok 89 - getScale fetches correct value
ok 90 - setScale throws exception with bad argument
ok 91 - getScale throws exception with argument
ok 92 - setScale throws exception with no argument
ok 93 - setScale throws exception with too many argument
ok 94 - setScale accepts undef
ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 97 - scale->other() is a valid Bio::MAGE::Association::End
ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 99 - scale->self() is a valid Bio::MAGE::Association::End
ok 100 - propertySets set in new()
ok 101 - setPropertySets returns correct value
ok 102 - getPropertySets fetches correct value
ok 103 - addPropertySets returns number of items in list
ok 104 - addPropertySets adds correct value
ok 105 - setPropertySets throws exception with non-array argument
ok 106 - setPropertySets throws exception with bad argument array
ok 107 - addPropertySets throws exception with no arguments
ok 108 - addPropertySets throws exception with bad array
ok 109 - setPropertySets accepts empty array ref
ok 110 - getPropertySets throws exception with argument
ok 111 - setPropertySets throws exception with no argument
ok 112 - setPropertySets throws exception with too many argument
ok 113 - setPropertySets accepts undef
ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 116 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 118 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 119 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel'
ok 120 - setChannel returns value
ok 121 - getChannel fetches correct value
ok 122 - setChannel throws exception with bad argument
ok 123 - getChannel throws exception with argument
ok 124 - setChannel throws exception with no argument
ok 125 - setChannel throws exception with too many argument
ok 126 - setChannel accepts undef
ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 129 - channel->other() is a valid Bio::MAGE::Association::End
ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 131 - channel->self() is a valid Bio::MAGE::Association::End
ok 132 - confidenceIndicators set in new()
ok 133 - setConfidenceIndicators returns correct value
ok 134 - getConfidenceIndicators fetches correct value
ok 135 - addConfidenceIndicators returns number of items in list
ok 136 - addConfidenceIndicators adds correct value
ok 137 - setConfidenceIndicators throws exception with non-array argument
ok 138 - setConfidenceIndicators throws exception with bad argument array
ok 139 - addConfidenceIndicators throws exception with no arguments
ok 140 - addConfidenceIndicators throws exception with bad array
ok 141 - setConfidenceIndicators accepts empty array ref
ok 142 - getConfidenceIndicators throws exception with argument
ok 143 - setConfidenceIndicators throws exception with no argument
ok 144 - setConfidenceIndicators throws exception with too many argument
ok 145 - setConfidenceIndicators accepts undef
ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End
ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End
ok 151 - quantitationTypeMaps set in new()
ok 152 - setQuantitationTypeMaps returns correct value
ok 153 - getQuantitationTypeMaps fetches correct value
ok 154 - addQuantitationTypeMaps returns number of items in list
ok 155 - addQuantitationTypeMaps adds correct value
ok 156 - setQuantitationTypeMaps throws exception with non-array argument
ok 157 - setQuantitationTypeMaps throws exception with bad argument array
ok 158 - addQuantitationTypeMaps throws exception with no arguments
ok 159 - addQuantitationTypeMaps throws exception with bad array
ok 160 - setQuantitationTypeMaps accepts empty array ref
ok 161 - getQuantitationTypeMaps throws exception with argument
ok 162 - setQuantitationTypeMaps throws exception with no argument
ok 163 - setQuantitationTypeMaps throws exception with too many argument
ok 164 - setQuantitationTypeMaps accepts undef
ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End
ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End
ok 170 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType'
ok 171 - An object of class 'Bio::MAGE::QuantitationType::SpecializedQuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType'
ok
t/StandardQuantitationType.t .....
1..183
ok 1 - use Bio::MAGE::QuantitationType::StandardQuantitationType;
ok 2 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType'
ok 3 - package
ok 4 - class_name
ok 5 - isBackground new
ok 6 - isBackground getter/setter
ok 7 - isBackground getter throws exception with argument
ok 8 - isBackground setter throws exception with no argument
ok 9 - isBackground setter throws exception with too many argument
ok 10 - isBackground setter accepts undef
ok 11 - identifier new
ok 12 - identifier getter/setter
ok 13 - identifier getter throws exception with argument
ok 14 - identifier setter throws exception with no argument
ok 15 - identifier setter throws exception with too many argument
ok 16 - identifier setter accepts undef
ok 17 - name new
ok 18 - name getter/setter
ok 19 - name getter throws exception with argument
ok 20 - name setter throws exception with no argument
ok 21 - name setter throws exception with too many argument
ok 22 - name setter accepts undef
ok 23 - descriptions set in new()
ok 24 - setDescriptions returns correct value
ok 25 - getDescriptions fetches correct value
ok 26 - addDescriptions returns number of items in list
ok 27 - addDescriptions adds correct value
ok 28 - setDescriptions throws exception with non-array argument
ok 29 - setDescriptions throws exception with bad argument array
ok 30 - addDescriptions throws exception with no arguments
ok 31 - addDescriptions throws exception with bad array
ok 32 - setDescriptions accepts empty array ref
ok 33 - getDescriptions throws exception with argument
ok 34 - setDescriptions throws exception with no argument
ok 35 - setDescriptions throws exception with too many argument
ok 36 - setDescriptions accepts undef
ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 39 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 41 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 42 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 43 - setDataType returns value
ok 44 - getDataType fetches correct value
ok 45 - setDataType throws exception with bad argument
ok 46 - getDataType throws exception with argument
ok 47 - setDataType throws exception with no argument
ok 48 - setDataType throws exception with too many argument
ok 49 - setDataType accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - dataType->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - dataType->self() is a valid Bio::MAGE::Association::End
ok 55 - auditTrail set in new()
ok 56 - setAuditTrail returns correct value
ok 57 - getAuditTrail fetches correct value
ok 58 - addAuditTrail returns number of items in list
ok 59 - addAuditTrail adds correct value
ok 60 - setAuditTrail throws exception with non-array argument
ok 61 - setAuditTrail throws exception with bad argument array
ok 62 - addAuditTrail throws exception with no arguments
ok 63 - addAuditTrail throws exception with bad array
ok 64 - setAuditTrail accepts empty array ref
ok 65 - getAuditTrail throws exception with argument
ok 66 - setAuditTrail throws exception with no argument
ok 67 - setAuditTrail throws exception with too many argument
ok 68 - setAuditTrail accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 75 - setSecurity returns value
ok 76 - getSecurity fetches correct value
ok 77 - setSecurity throws exception with bad argument
ok 78 - getSecurity throws exception with argument
ok 79 - setSecurity throws exception with no argument
ok 80 - setSecurity throws exception with too many argument
ok 81 - setSecurity accepts undef
ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - security->other() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 86 - security->self() is a valid Bio::MAGE::Association::End
ok 87 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 88 - setScale returns value
ok 89 - getScale fetches correct value
ok 90 - setScale throws exception with bad argument
ok 91 - getScale throws exception with argument
ok 92 - setScale throws exception with no argument
ok 93 - setScale throws exception with too many argument
ok 94 - setScale accepts undef
ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 97 - scale->other() is a valid Bio::MAGE::Association::End
ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 99 - scale->self() is a valid Bio::MAGE::Association::End
ok 100 - propertySets set in new()
ok 101 - setPropertySets returns correct value
ok 102 - getPropertySets fetches correct value
ok 103 - addPropertySets returns number of items in list
ok 104 - addPropertySets adds correct value
ok 105 - setPropertySets throws exception with non-array argument
ok 106 - setPropertySets throws exception with bad argument array
ok 107 - addPropertySets throws exception with no arguments
ok 108 - addPropertySets throws exception with bad array
ok 109 - setPropertySets accepts empty array ref
ok 110 - getPropertySets throws exception with argument
ok 111 - setPropertySets throws exception with no argument
ok 112 - setPropertySets throws exception with too many argument
ok 113 - setPropertySets accepts undef
ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 116 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 118 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 119 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel'
ok 120 - setChannel returns value
ok 121 - getChannel fetches correct value
ok 122 - setChannel throws exception with bad argument
ok 123 - getChannel throws exception with argument
ok 124 - setChannel throws exception with no argument
ok 125 - setChannel throws exception with too many argument
ok 126 - setChannel accepts undef
ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 129 - channel->other() is a valid Bio::MAGE::Association::End
ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 131 - channel->self() is a valid Bio::MAGE::Association::End
ok 132 - confidenceIndicators set in new()
ok 133 - setConfidenceIndicators returns correct value
ok 134 - getConfidenceIndicators fetches correct value
ok 135 - addConfidenceIndicators returns number of items in list
ok 136 - addConfidenceIndicators adds correct value
ok 137 - setConfidenceIndicators throws exception with non-array argument
ok 138 - setConfidenceIndicators throws exception with bad argument array
ok 139 - addConfidenceIndicators throws exception with no arguments
ok 140 - addConfidenceIndicators throws exception with bad array
ok 141 - setConfidenceIndicators accepts empty array ref
ok 142 - getConfidenceIndicators throws exception with argument
ok 143 - setConfidenceIndicators throws exception with no argument
ok 144 - setConfidenceIndicators throws exception with too many argument
ok 145 - setConfidenceIndicators accepts undef
ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End
ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End
ok 151 - quantitationTypeMaps set in new()
ok 152 - setQuantitationTypeMaps returns correct value
ok 153 - getQuantitationTypeMaps fetches correct value
ok 154 - addQuantitationTypeMaps returns number of items in list
ok 155 - addQuantitationTypeMaps adds correct value
ok 156 - setQuantitationTypeMaps throws exception with non-array argument
ok 157 - setQuantitationTypeMaps throws exception with bad argument array
ok 158 - addQuantitationTypeMaps throws exception with no arguments
ok 159 - addQuantitationTypeMaps throws exception with bad array
ok 160 - setQuantitationTypeMaps accepts empty array ref
ok 161 - getQuantitationTypeMaps throws exception with argument
ok 162 - setQuantitationTypeMaps throws exception with no argument
ok 163 - setQuantitationTypeMaps throws exception with too many argument
ok 164 - setQuantitationTypeMaps accepts undef
ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End
ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End
ok 170 - An object of class 'Bio::MAGE::QuantitationType::DerivedSignal' isa 'Bio::MAGE::QuantitationType::DerivedSignal'
ok 171 - An object of class 'Bio::MAGE::QuantitationType::DerivedSignal' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType'
ok 172 - An object of class 'Bio::MAGE::QuantitationType::MeasuredSignal' isa 'Bio::MAGE::QuantitationType::MeasuredSignal'
ok 173 - An object of class 'Bio::MAGE::QuantitationType::MeasuredSignal' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType'
ok 174 - An object of class 'Bio::MAGE::QuantitationType::Ratio' isa 'Bio::MAGE::QuantitationType::Ratio'
ok 175 - An object of class 'Bio::MAGE::QuantitationType::Ratio' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType'
ok 176 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator'
ok 177 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType'
ok 178 - An object of class 'Bio::MAGE::QuantitationType::PresentAbsent' isa 'Bio::MAGE::QuantitationType::PresentAbsent'
ok 179 - An object of class 'Bio::MAGE::QuantitationType::PresentAbsent' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType'
ok 180 - An object of class 'Bio::MAGE::QuantitationType::Failed' isa 'Bio::MAGE::QuantitationType::Failed'
ok 181 - An object of class 'Bio::MAGE::QuantitationType::Failed' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType'
ok 182 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType'
ok 183 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType'
ok
t/TemperatureUnit.t ..............
1..41
ok 1 - use Bio::MAGE::Measurement::TemperatureUnit;
ok 2 - An object of class 'Bio::MAGE::Measurement::TemperatureUnit' isa 'Bio::MAGE::Measurement::TemperatureUnit'
ok 3 - package
ok 4 - class_name
ok 5 - unitName new
ok 6 - unitName getter/setter
ok 7 - unitName getter throws exception with argument
ok 8 - unitName setter throws exception with no argument
ok 9 - unitName setter throws exception with too many argument
ok 10 - unitName setter accepts undef
ok 11 - unitNameCV new
ok 12 - unitNameCV getter/setter
ok 13 - unitNameCV getter throws exception with argument
ok 14 - unitNameCV setter throws exception with no argument
ok 15 - unitNameCV setter throws exception with too many argument
ok 16 - unitNameCV setter accepts undef
ok 17 - unitNameCV setter throws exception with bad argument
ok 18 - unitNameCV accepts degree_C
ok 19 - unitNameCV accepts degree_F
ok 20 - unitNameCV accepts K
ok 21 - propertySets set in new()
ok 22 - setPropertySets returns correct value
ok 23 - getPropertySets fetches correct value
ok 24 - addPropertySets returns number of items in list
ok 25 - addPropertySets adds correct value
ok 26 - setPropertySets throws exception with non-array argument
ok 27 - setPropertySets throws exception with bad argument array
ok 28 - addPropertySets throws exception with no arguments
ok 29 - addPropertySets throws exception with bad array
ok 30 - setPropertySets accepts empty array ref
ok 31 - getPropertySets throws exception with argument
ok 32 - setPropertySets throws exception with no argument
ok 33 - setPropertySets throws exception with too many argument
ok 34 - setPropertySets accepts undef
ok 35 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 36 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 37 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 39 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 40 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit'
ok 41 - An object of class 'Bio::MAGE::Measurement::TemperatureUnit' isa 'Bio::MAGE::Measurement::Unit'
ok
t/TimeUnit.t .....................
1..47
ok 1 - use Bio::MAGE::Measurement::TimeUnit;
ok 2 - An object of class 'Bio::MAGE::Measurement::TimeUnit' isa 'Bio::MAGE::Measurement::TimeUnit'
ok 3 - package
ok 4 - class_name
ok 5 - unitName new
ok 6 - unitName getter/setter
ok 7 - unitName getter throws exception with argument
ok 8 - unitName setter throws exception with no argument
ok 9 - unitName setter throws exception with too many argument
ok 10 - unitName setter accepts undef
ok 11 - unitNameCV new
ok 12 - unitNameCV getter/setter
ok 13 - unitNameCV getter throws exception with argument
ok 14 - unitNameCV setter throws exception with no argument
ok 15 - unitNameCV setter throws exception with too many argument
ok 16 - unitNameCV setter accepts undef
ok 17 - unitNameCV setter throws exception with bad argument
ok 18 - unitNameCV accepts years
ok 19 - unitNameCV accepts months
ok 20 - unitNameCV accepts weeks
ok 21 - unitNameCV accepts d
ok 22 - unitNameCV accepts h
ok 23 - unitNameCV accepts m
ok 24 - unitNameCV accepts s
ok 25 - unitNameCV accepts us
ok 26 - unitNameCV accepts other
ok 27 - propertySets set in new()
ok 28 - setPropertySets returns correct value
ok 29 - getPropertySets fetches correct value
ok 30 - addPropertySets returns number of items in list
ok 31 - addPropertySets adds correct value
ok 32 - setPropertySets throws exception with non-array argument
ok 33 - setPropertySets throws exception with bad argument array
ok 34 - addPropertySets throws exception with no arguments
ok 35 - addPropertySets throws exception with bad array
ok 36 - setPropertySets accepts empty array ref
ok 37 - getPropertySets throws exception with argument
ok 38 - setPropertySets throws exception with no argument
ok 39 - setPropertySets throws exception with too many argument
ok 40 - setPropertySets accepts undef
ok 41 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 42 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 43 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 45 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 46 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit'
ok 47 - An object of class 'Bio::MAGE::Measurement::TimeUnit' isa 'Bio::MAGE::Measurement::Unit'
ok
t/Transformation.t ...............
1..178
ok 1 - use Bio::MAGE::BioAssayData::Transformation;
ok 2 - An object of class 'Bio::MAGE::BioAssayData::Transformation' isa 'Bio::MAGE::BioAssayData::Transformation'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - name new
ok 12 - name getter/setter
ok 13 - name getter throws exception with argument
ok 14 - name setter throws exception with no argument
ok 15 - name setter throws exception with too many argument
ok 16 - name setter accepts undef
ok 17 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' isa 'Bio::MAGE::BioAssayData::QuantitationTypeMapping'
ok 18 - setQuantitationTypeMapping returns value
ok 19 - getQuantitationTypeMapping fetches correct value
ok 20 - setQuantitationTypeMapping throws exception with bad argument
ok 21 - getQuantitationTypeMapping throws exception with argument
ok 22 - setQuantitationTypeMapping throws exception with no argument
ok 23 - setQuantitationTypeMapping throws exception with too many argument
ok 24 - setQuantitationTypeMapping accepts undef
ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 27 - quantitationTypeMapping->other() is a valid Bio::MAGE::Association::End
ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 29 - quantitationTypeMapping->self() is a valid Bio::MAGE::Association::End
ok 30 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMapping' isa 'Bio::MAGE::BioAssayData::DesignElementMapping'
ok 31 - setDesignElementMapping returns value
ok 32 - getDesignElementMapping fetches correct value
ok 33 - setDesignElementMapping throws exception with bad argument
ok 34 - getDesignElementMapping throws exception with argument
ok 35 - setDesignElementMapping throws exception with no argument
ok 36 - setDesignElementMapping throws exception with too many argument
ok 37 - setDesignElementMapping accepts undef
ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 40 - designElementMapping->other() is a valid Bio::MAGE::Association::End
ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 42 - designElementMapping->self() is a valid Bio::MAGE::Association::End
ok 43 - auditTrail set in new()
ok 44 - setAuditTrail returns correct value
ok 45 - getAuditTrail fetches correct value
ok 46 - addAuditTrail returns number of items in list
ok 47 - addAuditTrail adds correct value
ok 48 - setAuditTrail throws exception with non-array argument
ok 49 - setAuditTrail throws exception with bad argument array
ok 50 - addAuditTrail throws exception with no arguments
ok 51 - addAuditTrail throws exception with bad array
ok 52 - setAuditTrail accepts empty array ref
ok 53 - getAuditTrail throws exception with argument
ok 54 - setAuditTrail throws exception with no argument
ok 55 - setAuditTrail throws exception with too many argument
ok 56 - setAuditTrail accepts undef
ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 59 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 61 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 62 - propertySets set in new()
ok 63 - setPropertySets returns correct value
ok 64 - getPropertySets fetches correct value
ok 65 - addPropertySets returns number of items in list
ok 66 - addPropertySets adds correct value
ok 67 - setPropertySets throws exception with non-array argument
ok 68 - setPropertySets throws exception with bad argument array
ok 69 - addPropertySets throws exception with no arguments
ok 70 - addPropertySets throws exception with bad array
ok 71 - setPropertySets accepts empty array ref
ok 72 - getPropertySets throws exception with argument
ok 73 - setPropertySets throws exception with no argument
ok 74 - setPropertySets throws exception with too many argument
ok 75 - setPropertySets accepts undef
ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 78 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 80 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 81 - protocolApplications set in new()
ok 82 - setProtocolApplications returns correct value
ok 83 - getProtocolApplications fetches correct value
ok 84 - addProtocolApplications returns number of items in list
ok 85 - addProtocolApplications adds correct value
ok 86 - setProtocolApplications throws exception with non-array argument
ok 87 - setProtocolApplications throws exception with bad argument array
ok 88 - addProtocolApplications throws exception with no arguments
ok 89 - addProtocolApplications throws exception with bad array
ok 90 - setProtocolApplications accepts empty array ref
ok 91 - getProtocolApplications throws exception with argument
ok 92 - setProtocolApplications throws exception with no argument
ok 93 - setProtocolApplications throws exception with too many argument
ok 94 - setProtocolApplications accepts undef
ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 97 - protocolApplications->other() is a valid Bio::MAGE::Association::End
ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 99 - protocolApplications->self() is a valid Bio::MAGE::Association::End
ok 100 - descriptions set in new()
ok 101 - setDescriptions returns correct value
ok 102 - getDescriptions fetches correct value
ok 103 - addDescriptions returns number of items in list
ok 104 - addDescriptions adds correct value
ok 105 - setDescriptions throws exception with non-array argument
ok 106 - setDescriptions throws exception with bad argument array
ok 107 - addDescriptions throws exception with no arguments
ok 108 - addDescriptions throws exception with bad array
ok 109 - setDescriptions accepts empty array ref
ok 110 - getDescriptions throws exception with argument
ok 111 - setDescriptions throws exception with no argument
ok 112 - setDescriptions throws exception with too many argument
ok 113 - setDescriptions accepts undef
ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 116 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 118 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 119 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 120 - setSecurity returns value
ok 121 - getSecurity fetches correct value
ok 122 - setSecurity throws exception with bad argument
ok 123 - getSecurity throws exception with argument
ok 124 - setSecurity throws exception with no argument
ok 125 - setSecurity throws exception with too many argument
ok 126 - setSecurity accepts undef
ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 129 - security->other() is a valid Bio::MAGE::Association::End
ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 131 - security->self() is a valid Bio::MAGE::Association::End
ok 132 - bioAssayDataSources set in new()
ok 133 - setBioAssayDataSources returns correct value
ok 134 - getBioAssayDataSources fetches correct value
ok 135 - addBioAssayDataSources returns number of items in list
ok 136 - addBioAssayDataSources adds correct value
ok 137 - setBioAssayDataSources throws exception with non-array argument
ok 138 - setBioAssayDataSources throws exception with bad argument array
ok 139 - addBioAssayDataSources throws exception with no arguments
ok 140 - addBioAssayDataSources throws exception with bad array
ok 141 - setBioAssayDataSources accepts empty array ref
ok 142 - getBioAssayDataSources throws exception with argument
ok 143 - setBioAssayDataSources throws exception with no argument
ok 144 - setBioAssayDataSources throws exception with too many argument
ok 145 - setBioAssayDataSources accepts undef
ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 148 - bioAssayDataSources->other() is a valid Bio::MAGE::Association::End
ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 150 - bioAssayDataSources->self() is a valid Bio::MAGE::Association::End
ok 151 - An object of class 'Bio::MAGE::BioAssayData::DerivedBioAssayData' isa 'Bio::MAGE::BioAssayData::DerivedBioAssayData'
ok 152 - setDerivedBioAssayDataTarget returns value
ok 153 - getDerivedBioAssayDataTarget fetches correct value
ok 154 - setDerivedBioAssayDataTarget throws exception with bad argument
ok 155 - getDerivedBioAssayDataTarget throws exception with argument
ok 156 - setDerivedBioAssayDataTarget throws exception with no argument
ok 157 - setDerivedBioAssayDataTarget throws exception with too many argument
ok 158 - setDerivedBioAssayDataTarget accepts undef
ok 159 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 161 - derivedBioAssayDataTarget->other() is a valid Bio::MAGE::Association::End
ok 162 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 163 - derivedBioAssayDataTarget->self() is a valid Bio::MAGE::Association::End
ok 164 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMapping' isa 'Bio::MAGE::BioAssayData::BioAssayMapping'
ok 165 - setBioAssayMapping returns value
ok 166 - getBioAssayMapping fetches correct value
ok 167 - setBioAssayMapping throws exception with bad argument
ok 168 - getBioAssayMapping throws exception with argument
ok 169 - setBioAssayMapping throws exception with no argument
ok 170 - setBioAssayMapping throws exception with too many argument
ok 171 - setBioAssayMapping accepts undef
ok 172 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 173 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 174 - bioAssayMapping->other() is a valid Bio::MAGE::Association::End
ok 175 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 176 - bioAssayMapping->self() is a valid Bio::MAGE::Association::End
ok 177 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent'
ok 178 - An object of class 'Bio::MAGE::BioAssayData::Transformation' isa 'Bio::MAGE::BioEvent::BioEvent'
ok
t/Treatment.t ....................
1..177
ok 1 - use Bio::MAGE::BioMaterial::Treatment;
ok 2 - An object of class 'Bio::MAGE::BioMaterial::Treatment' isa 'Bio::MAGE::BioMaterial::Treatment'
ok 3 - package
ok 4 - class_name
ok 5 - identifier new
ok 6 - identifier getter/setter
ok 7 - identifier getter throws exception with argument
ok 8 - identifier setter throws exception with no argument
ok 9 - identifier setter throws exception with too many argument
ok 10 - identifier setter accepts undef
ok 11 - order new
ok 12 - order getter/setter
ok 13 - order getter throws exception with argument
ok 14 - order setter throws exception with no argument
ok 15 - order setter throws exception with too many argument
ok 16 - order setter accepts undef
ok 17 - name new
ok 18 - name getter/setter
ok 19 - name getter throws exception with argument
ok 20 - name setter throws exception with no argument
ok 21 - name setter throws exception with too many argument
ok 22 - name setter accepts undef
ok 23 - sourceBioMaterialMeasurements set in new()
ok 24 - setSourceBioMaterialMeasurements returns correct value
ok 25 - getSourceBioMaterialMeasurements fetches correct value
ok 26 - addSourceBioMaterialMeasurements returns number of items in list
ok 27 - addSourceBioMaterialMeasurements adds correct value
ok 28 - setSourceBioMaterialMeasurements throws exception with non-array argument
ok 29 - setSourceBioMaterialMeasurements throws exception with bad argument array
ok 30 - addSourceBioMaterialMeasurements throws exception with no arguments
ok 31 - addSourceBioMaterialMeasurements throws exception with bad array
ok 32 - setSourceBioMaterialMeasurements accepts empty array ref
ok 33 - getSourceBioMaterialMeasurements throws exception with argument
ok 34 - setSourceBioMaterialMeasurements throws exception with no argument
ok 35 - setSourceBioMaterialMeasurements throws exception with too many argument
ok 36 - setSourceBioMaterialMeasurements accepts undef
ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 39 - sourceBioMaterialMeasurements->other() is a valid Bio::MAGE::Association::End
ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 41 - sourceBioMaterialMeasurements->self() is a valid Bio::MAGE::Association::End
ok 42 - auditTrail set in new()
ok 43 - setAuditTrail returns correct value
ok 44 - getAuditTrail fetches correct value
ok 45 - addAuditTrail returns number of items in list
ok 46 - addAuditTrail adds correct value
ok 47 - setAuditTrail throws exception with non-array argument
ok 48 - setAuditTrail throws exception with bad argument array
ok 49 - addAuditTrail throws exception with no arguments
ok 50 - addAuditTrail throws exception with bad array
ok 51 - setAuditTrail accepts empty array ref
ok 52 - getAuditTrail throws exception with argument
ok 53 - setAuditTrail throws exception with no argument
ok 54 - setAuditTrail throws exception with too many argument
ok 55 - setAuditTrail accepts undef
ok 56 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 57 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 58 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 59 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 60 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 61 - propertySets set in new()
ok 62 - setPropertySets returns correct value
ok 63 - getPropertySets fetches correct value
ok 64 - addPropertySets returns number of items in list
ok 65 - addPropertySets adds correct value
ok 66 - setPropertySets throws exception with non-array argument
ok 67 - setPropertySets throws exception with bad argument array
ok 68 - addPropertySets throws exception with no arguments
ok 69 - addPropertySets throws exception with bad array
ok 70 - setPropertySets accepts empty array ref
ok 71 - getPropertySets throws exception with argument
ok 72 - setPropertySets throws exception with no argument
ok 73 - setPropertySets throws exception with too many argument
ok 74 - setPropertySets accepts undef
ok 75 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 76 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 77 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 79 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 80 - protocolApplications set in new()
ok 81 - setProtocolApplications returns correct value
ok 82 - getProtocolApplications fetches correct value
ok 83 - addProtocolApplications returns number of items in list
ok 84 - addProtocolApplications adds correct value
ok 85 - setProtocolApplications throws exception with non-array argument
ok 86 - setProtocolApplications throws exception with bad argument array
ok 87 - addProtocolApplications throws exception with no arguments
ok 88 - addProtocolApplications throws exception with bad array
ok 89 - setProtocolApplications accepts empty array ref
ok 90 - getProtocolApplications throws exception with argument
ok 91 - setProtocolApplications throws exception with no argument
ok 92 - setProtocolApplications throws exception with too many argument
ok 93 - setProtocolApplications accepts undef
ok 94 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 95 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 96 - protocolApplications->other() is a valid Bio::MAGE::Association::End
ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 98 - protocolApplications->self() is a valid Bio::MAGE::Association::End
ok 99 - descriptions set in new()
ok 100 - setDescriptions returns correct value
ok 101 - getDescriptions fetches correct value
ok 102 - addDescriptions returns number of items in list
ok 103 - addDescriptions adds correct value
ok 104 - setDescriptions throws exception with non-array argument
ok 105 - setDescriptions throws exception with bad argument array
ok 106 - addDescriptions throws exception with no arguments
ok 107 - addDescriptions throws exception with bad array
ok 108 - setDescriptions accepts empty array ref
ok 109 - getDescriptions throws exception with argument
ok 110 - setDescriptions throws exception with no argument
ok 111 - setDescriptions throws exception with too many argument
ok 112 - setDescriptions accepts undef
ok 113 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 114 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 115 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 117 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 118 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 119 - setSecurity returns value
ok 120 - getSecurity fetches correct value
ok 121 - setSecurity throws exception with bad argument
ok 122 - getSecurity throws exception with argument
ok 123 - setSecurity throws exception with no argument
ok 124 - setSecurity throws exception with too many argument
ok 125 - setSecurity accepts undef
ok 126 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 127 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 128 - security->other() is a valid Bio::MAGE::Association::End
ok 129 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 130 - security->self() is a valid Bio::MAGE::Association::End
ok 131 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 132 - setAction returns value
ok 133 - getAction fetches correct value
ok 134 - setAction throws exception with bad argument
ok 135 - getAction throws exception with argument
ok 136 - setAction throws exception with no argument
ok 137 - setAction throws exception with too many argument
ok 138 - setAction accepts undef
ok 139 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 141 - action->other() is a valid Bio::MAGE::Association::End
ok 142 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 143 - action->self() is a valid Bio::MAGE::Association::End
ok 144 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement'
ok 145 - setActionMeasurement returns value
ok 146 - getActionMeasurement fetches correct value
ok 147 - setActionMeasurement throws exception with bad argument
ok 148 - getActionMeasurement throws exception with argument
ok 149 - setActionMeasurement throws exception with no argument
ok 150 - setActionMeasurement throws exception with too many argument
ok 151 - setActionMeasurement accepts undef
ok 152 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 154 - actionMeasurement->other() is a valid Bio::MAGE::Association::End
ok 155 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 156 - actionMeasurement->self() is a valid Bio::MAGE::Association::End
ok 157 - compoundMeasurements set in new()
ok 158 - setCompoundMeasurements returns correct value
ok 159 - getCompoundMeasurements fetches correct value
ok 160 - addCompoundMeasurements returns number of items in list
ok 161 - addCompoundMeasurements adds correct value
ok 162 - setCompoundMeasurements throws exception with non-array argument
ok 163 - setCompoundMeasurements throws exception with bad argument array
ok 164 - addCompoundMeasurements throws exception with no arguments
ok 165 - addCompoundMeasurements throws exception with bad array
ok 166 - setCompoundMeasurements accepts empty array ref
ok 167 - getCompoundMeasurements throws exception with argument
ok 168 - setCompoundMeasurements throws exception with no argument
ok 169 - setCompoundMeasurements throws exception with too many argument
ok 170 - setCompoundMeasurements accepts undef
ok 171 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 172 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 173 - compoundMeasurements->other() is a valid Bio::MAGE::Association::End
ok 174 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 175 - compoundMeasurements->self() is a valid Bio::MAGE::Association::End
ok 176 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent'
ok 177 - An object of class 'Bio::MAGE::BioMaterial::Treatment' isa 'Bio::MAGE::BioEvent::BioEvent'
ok
t/Unit.t .........................
1..45
ok 1 - use Bio::MAGE::Measurement::Unit;
ok 2 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit'
ok 3 - package
ok 4 - class_name
ok 5 - unitName new
ok 6 - unitName getter/setter
ok 7 - unitName getter throws exception with argument
ok 8 - unitName setter throws exception with no argument
ok 9 - unitName setter throws exception with too many argument
ok 10 - unitName setter accepts undef
ok 11 - propertySets set in new()
ok 12 - setPropertySets returns correct value
ok 13 - getPropertySets fetches correct value
ok 14 - addPropertySets returns number of items in list
ok 15 - addPropertySets adds correct value
ok 16 - setPropertySets throws exception with non-array argument
ok 17 - setPropertySets throws exception with bad argument array
ok 18 - addPropertySets throws exception with no arguments
ok 19 - addPropertySets throws exception with bad array
ok 20 - setPropertySets accepts empty array ref
ok 21 - getPropertySets throws exception with argument
ok 22 - setPropertySets throws exception with no argument
ok 23 - setPropertySets throws exception with too many argument
ok 24 - setPropertySets accepts undef
ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 27 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 29 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 30 - An object of class 'Bio::MAGE::Measurement::TimeUnit' isa 'Bio::MAGE::Measurement::TimeUnit'
ok 31 - An object of class 'Bio::MAGE::Measurement::TimeUnit' isa 'Bio::MAGE::Measurement::Unit'
ok 32 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit'
ok 33 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::Unit'
ok 34 - An object of class 'Bio::MAGE::Measurement::TemperatureUnit' isa 'Bio::MAGE::Measurement::TemperatureUnit'
ok 35 - An object of class 'Bio::MAGE::Measurement::TemperatureUnit' isa 'Bio::MAGE::Measurement::Unit'
ok 36 - An object of class 'Bio::MAGE::Measurement::QuantityUnit' isa 'Bio::MAGE::Measurement::QuantityUnit'
ok 37 - An object of class 'Bio::MAGE::Measurement::QuantityUnit' isa 'Bio::MAGE::Measurement::Unit'
ok 38 - An object of class 'Bio::MAGE::Measurement::MassUnit' isa 'Bio::MAGE::Measurement::MassUnit'
ok 39 - An object of class 'Bio::MAGE::Measurement::MassUnit' isa 'Bio::MAGE::Measurement::Unit'
ok 40 - An object of class 'Bio::MAGE::Measurement::VolumeUnit' isa 'Bio::MAGE::Measurement::VolumeUnit'
ok 41 - An object of class 'Bio::MAGE::Measurement::VolumeUnit' isa 'Bio::MAGE::Measurement::Unit'
ok 42 - An object of class 'Bio::MAGE::Measurement::ConcentrationUnit' isa 'Bio::MAGE::Measurement::ConcentrationUnit'
ok 43 - An object of class 'Bio::MAGE::Measurement::ConcentrationUnit' isa 'Bio::MAGE::Measurement::Unit'
ok 44 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable'
ok 45 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Extendable'
ok
t/VolumeUnit.t ...................
1..47
ok 1 - use Bio::MAGE::Measurement::VolumeUnit;
ok 2 - An object of class 'Bio::MAGE::Measurement::VolumeUnit' isa 'Bio::MAGE::Measurement::VolumeUnit'
ok 3 - package
ok 4 - class_name
ok 5 - unitName new
ok 6 - unitName getter/setter
ok 7 - unitName getter throws exception with argument
ok 8 - unitName setter throws exception with no argument
ok 9 - unitName setter throws exception with too many argument
ok 10 - unitName setter accepts undef
ok 11 - unitNameCV new
ok 12 - unitNameCV getter/setter
ok 13 - unitNameCV getter throws exception with argument
ok 14 - unitNameCV setter throws exception with no argument
ok 15 - unitNameCV setter throws exception with too many argument
ok 16 - unitNameCV setter accepts undef
ok 17 - unitNameCV setter throws exception with bad argument
ok 18 - unitNameCV accepts mL
ok 19 - unitNameCV accepts cc
ok 20 - unitNameCV accepts dL
ok 21 - unitNameCV accepts L
ok 22 - unitNameCV accepts uL
ok 23 - unitNameCV accepts nL
ok 24 - unitNameCV accepts pL
ok 25 - unitNameCV accepts fL
ok 26 - unitNameCV accepts other
ok 27 - propertySets set in new()
ok 28 - setPropertySets returns correct value
ok 29 - getPropertySets fetches correct value
ok 30 - addPropertySets returns number of items in list
ok 31 - addPropertySets adds correct value
ok 32 - setPropertySets throws exception with non-array argument
ok 33 - setPropertySets throws exception with bad argument array
ok 34 - addPropertySets throws exception with no arguments
ok 35 - addPropertySets throws exception with bad array
ok 36 - setPropertySets accepts empty array ref
ok 37 - getPropertySets throws exception with argument
ok 38 - setPropertySets throws exception with no argument
ok 39 - setPropertySets throws exception with too many argument
ok 40 - setPropertySets accepts undef
ok 41 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 42 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 43 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 45 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 46 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit'
ok 47 - An object of class 'Bio::MAGE::Measurement::VolumeUnit' isa 'Bio::MAGE::Measurement::Unit'
ok
t/Zone.t .........................
1..137
ok 1 - use Bio::MAGE::ArrayDesign::Zone;
ok 2 - An object of class 'Bio::MAGE::ArrayDesign::Zone' isa 'Bio::MAGE::ArrayDesign::Zone'
ok 3 - package
ok 4 - class_name
ok 5 - lowerRightY new
ok 6 - lowerRightY getter/setter
ok 7 - lowerRightY getter throws exception with argument
ok 8 - lowerRightY setter throws exception with no argument
ok 9 - lowerRightY setter throws exception with too many argument
ok 10 - lowerRightY setter accepts undef
ok 11 - lowerRightX new
ok 12 - lowerRightX getter/setter
ok 13 - lowerRightX getter throws exception with argument
ok 14 - lowerRightX setter throws exception with no argument
ok 15 - lowerRightX setter throws exception with too many argument
ok 16 - lowerRightX setter accepts undef
ok 17 - upperLeftX new
ok 18 - upperLeftX getter/setter
ok 19 - upperLeftX getter throws exception with argument
ok 20 - upperLeftX setter throws exception with no argument
ok 21 - upperLeftX setter throws exception with too many argument
ok 22 - upperLeftX setter accepts undef
ok 23 - name new
ok 24 - name getter/setter
ok 25 - name getter throws exception with argument
ok 26 - name setter throws exception with no argument
ok 27 - name setter throws exception with too many argument
ok 28 - name setter accepts undef
ok 29 - upperLeftY new
ok 30 - upperLeftY getter/setter
ok 31 - upperLeftY getter throws exception with argument
ok 32 - upperLeftY setter throws exception with no argument
ok 33 - upperLeftY setter throws exception with too many argument
ok 34 - upperLeftY setter accepts undef
ok 35 - identifier new
ok 36 - identifier getter/setter
ok 37 - identifier getter throws exception with argument
ok 38 - identifier setter throws exception with no argument
ok 39 - identifier setter throws exception with too many argument
ok 40 - identifier setter accepts undef
ok 41 - row new
ok 42 - row getter/setter
ok 43 - row getter throws exception with argument
ok 44 - row setter throws exception with no argument
ok 45 - row setter throws exception with too many argument
ok 46 - row setter accepts undef
ok 47 - column new
ok 48 - column getter/setter
ok 49 - column getter throws exception with argument
ok 50 - column setter throws exception with no argument
ok 51 - column setter throws exception with too many argument
ok 52 - column setter accepts undef
ok 53 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit'
ok 54 - setDistanceUnit returns value
ok 55 - getDistanceUnit fetches correct value
ok 56 - setDistanceUnit throws exception with bad argument
ok 57 - getDistanceUnit throws exception with argument
ok 58 - setDistanceUnit throws exception with no argument
ok 59 - setDistanceUnit throws exception with too many argument
ok 60 - setDistanceUnit accepts undef
ok 61 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 62 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 63 - distanceUnit->other() is a valid Bio::MAGE::Association::End
ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 65 - distanceUnit->self() is a valid Bio::MAGE::Association::End
ok 66 - descriptions set in new()
ok 67 - setDescriptions returns correct value
ok 68 - getDescriptions fetches correct value
ok 69 - addDescriptions returns number of items in list
ok 70 - addDescriptions adds correct value
ok 71 - setDescriptions throws exception with non-array argument
ok 72 - setDescriptions throws exception with bad argument array
ok 73 - addDescriptions throws exception with no arguments
ok 74 - addDescriptions throws exception with bad array
ok 75 - setDescriptions accepts empty array ref
ok 76 - getDescriptions throws exception with argument
ok 77 - setDescriptions throws exception with no argument
ok 78 - setDescriptions throws exception with too many argument
ok 79 - setDescriptions accepts undef
ok 80 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 81 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 82 - descriptions->other() is a valid Bio::MAGE::Association::End
ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 84 - descriptions->self() is a valid Bio::MAGE::Association::End
ok 85 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security'
ok 86 - setSecurity returns value
ok 87 - getSecurity fetches correct value
ok 88 - setSecurity throws exception with bad argument
ok 89 - getSecurity throws exception with argument
ok 90 - setSecurity throws exception with no argument
ok 91 - setSecurity throws exception with too many argument
ok 92 - setSecurity accepts undef
ok 93 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 94 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 95 - security->other() is a valid Bio::MAGE::Association::End
ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 97 - security->self() is a valid Bio::MAGE::Association::End
ok 98 - auditTrail set in new()
ok 99 - setAuditTrail returns correct value
ok 100 - getAuditTrail fetches correct value
ok 101 - addAuditTrail returns number of items in list
ok 102 - addAuditTrail adds correct value
ok 103 - setAuditTrail throws exception with non-array argument
ok 104 - setAuditTrail throws exception with bad argument array
ok 105 - addAuditTrail throws exception with no arguments
ok 106 - addAuditTrail throws exception with bad array
ok 107 - setAuditTrail accepts empty array ref
ok 108 - getAuditTrail throws exception with argument
ok 109 - setAuditTrail throws exception with no argument
ok 110 - setAuditTrail throws exception with too many argument
ok 111 - setAuditTrail accepts undef
ok 112 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 113 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 114 - auditTrail->other() is a valid Bio::MAGE::Association::End
ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 116 - auditTrail->self() is a valid Bio::MAGE::Association::End
ok 117 - propertySets set in new()
ok 118 - setPropertySets returns correct value
ok 119 - getPropertySets fetches correct value
ok 120 - addPropertySets returns number of items in list
ok 121 - addPropertySets adds correct value
ok 122 - setPropertySets throws exception with non-array argument
ok 123 - setPropertySets throws exception with bad argument array
ok 124 - addPropertySets throws exception with no arguments
ok 125 - addPropertySets throws exception with bad array
ok 126 - setPropertySets accepts empty array ref
ok 127 - getPropertySets throws exception with argument
ok 128 - setPropertySets throws exception with no argument
ok 129 - setPropertySets throws exception with too many argument
ok 130 - setPropertySets accepts undef
ok 131 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 132 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 133 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 135 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 136 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable'
ok 137 - An object of class 'Bio::MAGE::ArrayDesign::Zone' isa 'Bio::MAGE::Identifiable'
ok
t/ZoneDefect.t ...................
1..64
ok 1 - use Bio::MAGE::Array::ZoneDefect;
ok 2 - An object of class 'Bio::MAGE::Array::ZoneDefect' isa 'Bio::MAGE::Array::ZoneDefect'
ok 3 - package
ok 4 - class_name
ok 5 - An object of class 'Bio::MAGE::Array::PositionDelta' isa 'Bio::MAGE::Array::PositionDelta'
ok 6 - setPositionDelta returns value
ok 7 - getPositionDelta fetches correct value
ok 8 - setPositionDelta throws exception with bad argument
ok 9 - getPositionDelta throws exception with argument
ok 10 - setPositionDelta throws exception with no argument
ok 11 - setPositionDelta throws exception with too many argument
ok 12 - setPositionDelta accepts undef
ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 15 - positionDelta->other() is a valid Bio::MAGE::Association::End
ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 17 - positionDelta->self() is a valid Bio::MAGE::Association::End
ok 18 - An object of class 'Bio::MAGE::ArrayDesign::Zone' isa 'Bio::MAGE::ArrayDesign::Zone'
ok 19 - setZone returns value
ok 20 - getZone fetches correct value
ok 21 - setZone throws exception with bad argument
ok 22 - getZone throws exception with argument
ok 23 - setZone throws exception with no argument
ok 24 - setZone throws exception with too many argument
ok 25 - setZone accepts undef
ok 26 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 27 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 28 - zone->other() is a valid Bio::MAGE::Association::End
ok 29 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 30 - zone->self() is a valid Bio::MAGE::Association::End
ok 31 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry'
ok 32 - setDefectType returns value
ok 33 - getDefectType fetches correct value
ok 34 - setDefectType throws exception with bad argument
ok 35 - getDefectType throws exception with argument
ok 36 - setDefectType throws exception with no argument
ok 37 - setDefectType throws exception with too many argument
ok 38 - setDefectType accepts undef
ok 39 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 41 - defectType->other() is a valid Bio::MAGE::Association::End
ok 42 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 43 - defectType->self() is a valid Bio::MAGE::Association::End
ok 44 - propertySets set in new()
ok 45 - setPropertySets returns correct value
ok 46 - getPropertySets fetches correct value
ok 47 - addPropertySets returns number of items in list
ok 48 - addPropertySets adds correct value
ok 49 - setPropertySets throws exception with non-array argument
ok 50 - setPropertySets throws exception with bad argument array
ok 51 - addPropertySets throws exception with no arguments
ok 52 - addPropertySets throws exception with bad array
ok 53 - setPropertySets accepts empty array ref
ok 54 - getPropertySets throws exception with argument
ok 55 - setPropertySets throws exception with no argument
ok 56 - setPropertySets throws exception with too many argument
ok 57 - setPropertySets accepts undef
ok 58 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 59 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 60 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 61 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 62 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 63 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable'
ok 64 - An object of class 'Bio::MAGE::Array::ZoneDefect' isa 'Bio::MAGE::Extendable'
ok
t/ZoneGroup.t ....................
1..94
ok 1 - use Bio::MAGE::ArrayDesign::ZoneGroup;
ok 2 - An object of class 'Bio::MAGE::ArrayDesign::ZoneGroup' isa 'Bio::MAGE::ArrayDesign::ZoneGroup'
ok 3 - package
ok 4 - class_name
ok 5 - zonesPerY new
ok 6 - zonesPerY getter/setter
ok 7 - zonesPerY getter throws exception with argument
ok 8 - zonesPerY setter throws exception with no argument
ok 9 - zonesPerY setter throws exception with too many argument
ok 10 - zonesPerY setter accepts undef
ok 11 - zonesPerX new
ok 12 - zonesPerX getter/setter
ok 13 - zonesPerX getter throws exception with argument
ok 14 - zonesPerX setter throws exception with no argument
ok 15 - zonesPerX setter throws exception with too many argument
ok 16 - zonesPerX setter accepts undef
ok 17 - spacingsBetweenZonesX new
ok 18 - spacingsBetweenZonesX getter/setter
ok 19 - spacingsBetweenZonesX getter throws exception with argument
ok 20 - spacingsBetweenZonesX setter throws exception with no argument
ok 21 - spacingsBetweenZonesX setter throws exception with too many argument
ok 22 - spacingsBetweenZonesX setter accepts undef
ok 23 - spacingsBetweenZonesY new
ok 24 - spacingsBetweenZonesY getter/setter
ok 25 - spacingsBetweenZonesY getter throws exception with argument
ok 26 - spacingsBetweenZonesY setter throws exception with no argument
ok 27 - spacingsBetweenZonesY setter throws exception with too many argument
ok 28 - spacingsBetweenZonesY setter accepts undef
ok 29 - An object of class 'Bio::MAGE::ArrayDesign::ZoneLayout' isa 'Bio::MAGE::ArrayDesign::ZoneLayout'
ok 30 - setZoneLayout returns value
ok 31 - getZoneLayout fetches correct value
ok 32 - setZoneLayout throws exception with bad argument
ok 33 - getZoneLayout throws exception with argument
ok 34 - setZoneLayout throws exception with no argument
ok 35 - setZoneLayout throws exception with too many argument
ok 36 - setZoneLayout accepts undef
ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 39 - zoneLayout->other() is a valid Bio::MAGE::Association::End
ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 41 - zoneLayout->self() is a valid Bio::MAGE::Association::End
ok 42 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit'
ok 43 - setDistanceUnit returns value
ok 44 - getDistanceUnit fetches correct value
ok 45 - setDistanceUnit throws exception with bad argument
ok 46 - getDistanceUnit throws exception with argument
ok 47 - setDistanceUnit throws exception with no argument
ok 48 - setDistanceUnit throws exception with too many argument
ok 49 - setDistanceUnit accepts undef
ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 52 - distanceUnit->other() is a valid Bio::MAGE::Association::End
ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 54 - distanceUnit->self() is a valid Bio::MAGE::Association::End
ok 55 - propertySets set in new()
ok 56 - setPropertySets returns correct value
ok 57 - getPropertySets fetches correct value
ok 58 - addPropertySets returns number of items in list
ok 59 - addPropertySets adds correct value
ok 60 - setPropertySets throws exception with non-array argument
ok 61 - setPropertySets throws exception with bad argument array
ok 62 - addPropertySets throws exception with no arguments
ok 63 - addPropertySets throws exception with bad array
ok 64 - setPropertySets accepts empty array ref
ok 65 - getPropertySets throws exception with argument
ok 66 - setPropertySets throws exception with no argument
ok 67 - setPropertySets throws exception with too many argument
ok 68 - setPropertySets accepts undef
ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 74 - zoneLocations set in new()
ok 75 - setZoneLocations returns correct value
ok 76 - getZoneLocations fetches correct value
ok 77 - addZoneLocations returns number of items in list
ok 78 - addZoneLocations adds correct value
ok 79 - setZoneLocations throws exception with non-array argument
ok 80 - setZoneLocations throws exception with bad argument array
ok 81 - addZoneLocations throws exception with no arguments
ok 82 - addZoneLocations throws exception with bad array
ok 83 - setZoneLocations accepts empty array ref
ok 84 - getZoneLocations throws exception with argument
ok 85 - setZoneLocations throws exception with no argument
ok 86 - setZoneLocations throws exception with too many argument
ok 87 - setZoneLocations accepts undef
ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 90 - zoneLocations->other() is a valid Bio::MAGE::Association::End
ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 92 - zoneLocations->self() is a valid Bio::MAGE::Association::End
ok 93 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable'
ok 94 - An object of class 'Bio::MAGE::ArrayDesign::ZoneGroup' isa 'Bio::MAGE::Extendable'
ok
t/ZoneLayout.t ...................
1..62
ok 1 - use Bio::MAGE::ArrayDesign::ZoneLayout;
ok 2 - An object of class 'Bio::MAGE::ArrayDesign::ZoneLayout' isa 'Bio::MAGE::ArrayDesign::ZoneLayout'
ok 3 - package
ok 4 - class_name
ok 5 - spacingBetweenRows new
ok 6 - spacingBetweenRows getter/setter
ok 7 - spacingBetweenRows getter throws exception with argument
ok 8 - spacingBetweenRows setter throws exception with no argument
ok 9 - spacingBetweenRows setter throws exception with too many argument
ok 10 - spacingBetweenRows setter accepts undef
ok 11 - numFeaturesPerCol new
ok 12 - numFeaturesPerCol getter/setter
ok 13 - numFeaturesPerCol getter throws exception with argument
ok 14 - numFeaturesPerCol setter throws exception with no argument
ok 15 - numFeaturesPerCol setter throws exception with too many argument
ok 16 - numFeaturesPerCol setter accepts undef
ok 17 - numFeaturesPerRow new
ok 18 - numFeaturesPerRow getter/setter
ok 19 - numFeaturesPerRow getter throws exception with argument
ok 20 - numFeaturesPerRow setter throws exception with no argument
ok 21 - numFeaturesPerRow setter throws exception with too many argument
ok 22 - numFeaturesPerRow setter accepts undef
ok 23 - spacingBetweenCols new
ok 24 - spacingBetweenCols getter/setter
ok 25 - spacingBetweenCols getter throws exception with argument
ok 26 - spacingBetweenCols setter throws exception with no argument
ok 27 - spacingBetweenCols setter throws exception with too many argument
ok 28 - spacingBetweenCols setter accepts undef
ok 29 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit'
ok 30 - setDistanceUnit returns value
ok 31 - getDistanceUnit fetches correct value
ok 32 - setDistanceUnit throws exception with bad argument
ok 33 - getDistanceUnit throws exception with argument
ok 34 - setDistanceUnit throws exception with no argument
ok 35 - setDistanceUnit throws exception with too many argument
ok 36 - setDistanceUnit accepts undef
ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 39 - distanceUnit->other() is a valid Bio::MAGE::Association::End
ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 41 - distanceUnit->self() is a valid Bio::MAGE::Association::End
ok 42 - propertySets set in new()
ok 43 - setPropertySets returns correct value
ok 44 - getPropertySets fetches correct value
ok 45 - addPropertySets returns number of items in list
ok 46 - addPropertySets adds correct value
ok 47 - setPropertySets throws exception with non-array argument
ok 48 - setPropertySets throws exception with bad argument array
ok 49 - addPropertySets throws exception with no arguments
ok 50 - addPropertySets throws exception with bad array
ok 51 - setPropertySets accepts empty array ref
ok 52 - getPropertySets throws exception with argument
ok 53 - setPropertySets throws exception with no argument
ok 54 - setPropertySets throws exception with too many argument
ok 55 - setPropertySets accepts undef
ok 56 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association'
ok 57 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 58 - propertySets->other() is a valid Bio::MAGE::Association::End
ok 59 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End'
ok 60 - propertySets->self() is a valid Bio::MAGE::Association::End
ok 61 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable'
ok 62 - An object of class 'Bio::MAGE::ArrayDesign::ZoneLayout' isa 'Bio::MAGE::Extendable'
ok
All tests successful.
Files=151, Tests=16488, 89 wallclock secs ( 1.78 usr 0.80 sys + 29.19 cusr 4.86 csys = 36.63 CPU)
Result: PASS
make[1]: Leaving directory '/build/libbio-mage-perl-20030502.3'
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install --destdir=debian/libbio-mage-perl/
make -j16 install DESTDIR=/build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[1]: Entering directory '/build/libbio-mage-perl-20030502.3'
Manifying 29 pod documents
Manifying 28 pod documents
Manifying 27 pod documents
Manifying 27 pod documents
Manifying 28 pod documents
Manifying 12 pod documents
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/classes.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/NameValueType.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Experiment.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Extendable.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Identifiable.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/HigherLevelAnalysis.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Describable.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioSequence.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioEvent.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Description.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Base.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Association.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BQS.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/DerivedSignal.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/Error.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/Ratio.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/Failed.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/PValue.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/ConfidenceIndicator.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/SpecializedQuantitationType.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/ExpectedValue.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/PresentAbsent.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/QuantitationType.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/StandardQuantitationType.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/MeasuredSignal.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/Hardware.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/ProtocolApplication.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/Protocol.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/ParameterValue.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/Parameterizable.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/HardwareApplication.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/ParameterizableApplication.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/Software.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/Parameter.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/SoftwareApplication.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Experiment/ExperimentDesign.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Experiment/ExperimentalFactor.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Experiment/Experiment.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Experiment/FactorValue.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/TimeUnit.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/TemperatureUnit.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/VolumeUnit.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/Unit.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/MassUnit.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/ConcentrationUnit.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/Measurement.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/QuantityUnit.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/DistanceUnit.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/HigherLevelAnalysis/Node.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/HigherLevelAnalysis/NodeContents.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/HigherLevelAnalysis/NodeValue.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/HigherLevelAnalysis/BioAssayDataCluster.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/MismatchInformation.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/ReporterCompositeMap.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/ReporterPosition.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/DesignElement.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/FeatureLocation.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/Feature.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/Reporter.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/Position.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/FeatureReporterMap.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/CompositeSequence.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/FeatureInformation.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/CompositeCompositeMap.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/CompositePosition.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioEvent/Map.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioEvent/BioEvent.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioSequence/SequencePosition.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioSequence/BioSequence.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioSequence/SeqFeatureLocation.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioSequence/SeqFeature.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Description/DatabaseEntry.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Description/ExternalReference.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Description/OntologyEntry.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Description/Description.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Description/Database.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/BioSample.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/Treatment.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/BioSource.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/BioMaterial.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/BioMaterialMeasurement.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/CompoundMeasurement.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/Compound.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/LabeledExtract.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/ReporterDimension.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/QuantitationTypeMapping.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/Transformation.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/QuantitationTypeMap.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/MeasuredBioAssayData.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/CompositeSequenceDimension.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioAssayData.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioDataTuples.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/FeatureDimension.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioDataCube.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioAssayDimension.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioAssayMap.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioDataValues.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/DerivedBioAssayData.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/DesignElementDimension.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioAssayMapping.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/QuantitationTypeDimension.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/DesignElementMapping.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/DesignElementMap.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioAssayDatum.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/FeatureExtraction.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/PhysicalBioAssay.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/BioAssayCreation.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/Image.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/BioAssayTreatment.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/Channel.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/ImageAcquisition.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/MeasuredBioAssay.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/Hybridization.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/BioAssay.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/DerivedBioAssay.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BQS/BibliographicReference.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/PhysicalArrayDesign.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/ZoneLayout.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/FeatureGroup.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/Zone.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/ReporterGroup.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/ZoneGroup.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/CompositeGroup.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/ArrayDesign.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/DesignElementGroup.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/Organization.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/Audit.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/SecurityGroup.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/Security.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/Contact.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/Person.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/Array.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ArrayManufacture.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ManufactureLIMSBiomaterial.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/Fiducial.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ZoneDefect.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ManufactureLIMS.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/FeatureDefect.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/PositionDelta.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ArrayGroup.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ArrayManufactureDeviation.pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::StandardQuantitationType.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::SpecializedQuantitationType.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::Ratio.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::QuantitationType.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::PresentAbsent.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::PValue.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::MeasuredSignal.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::Failed.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::ExpectedValue.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::Error.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::DerivedSignal.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::ConfidenceIndicator.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::SoftwareApplication.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::Software.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::ProtocolApplication.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::Protocol.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::ParameterizableApplication.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::Parameterizable.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::ParameterValue.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::Parameter.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::HardwareApplication.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::Hardware.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::NameValueType.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::VolumeUnit.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::Unit.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::TimeUnit.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::TemperatureUnit.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::QuantityUnit.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::Measurement.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::MassUnit.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::DistanceUnit.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::ConcentrationUnit.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Identifiable.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::NodeValue.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::NodeContents.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::Node.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Extendable.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Experiment::FactorValue.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Experiment::ExperimentalFactor.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Experiment::ExperimentDesign.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Experiment::Experiment.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Experiment.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::ReporterPosition.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::ReporterCompositeMap.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::Reporter.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::Position.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::MismatchInformation.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::FeatureReporterMap.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::FeatureLocation.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::FeatureInformation.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::Feature.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::DesignElement.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::CompositeSequence.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::CompositePosition.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::CompositeCompositeMap.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description::OntologyEntry.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description::ExternalReference.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description::Description.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description::DatabaseEntry.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description::Database.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Describable.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioSequence::SequencePosition.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioSequence::SeqFeatureLocation.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioSequence::SeqFeature.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioSequence::BioSequence.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioSequence.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::Treatment.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::LabeledExtract.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::CompoundMeasurement.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::Compound.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::BioSource.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::BioSample.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::BioMaterialMeasurement.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::BioMaterial.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioEvent::Map.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioEvent::BioEvent.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioEvent.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::Transformation.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::ReporterDimension.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::QuantitationTypeMapping.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::QuantitationTypeMap.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::QuantitationTypeDimension.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::MeasuredBioAssayData.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::FeatureDimension.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::DesignElementMapping.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::DesignElementMap.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::DesignElementDimension.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::DerivedBioAssayData.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::CompositeSequenceDimension.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioDataValues.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioDataTuples.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioDataCube.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayMapping.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayMap.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayDimension.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayDatum.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayData.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::PhysicalBioAssay.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::MeasuredBioAssay.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::ImageAcquisition.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::Image.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::Hybridization.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::FeatureExtraction.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::DerivedBioAssay.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::Channel.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::BioAssayTreatment.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::BioAssayCreation.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::BioAssay.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Base.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BQS::BibliographicReference.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BQS.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::SecurityGroup.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Security.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Person.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Organization.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Contact.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Audit.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Association.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::ZoneLayout.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::ZoneGroup.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::Zone.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::ReporterGroup.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::PhysicalArrayDesign.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::FeatureGroup.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::DesignElementGroup.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::CompositeGroup.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::ArrayDesign.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::ZoneDefect.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::PositionDelta.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::ManufactureLIMSBiomaterial.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::ManufactureLIMS.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::Fiducial.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::FeatureDefect.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::ArrayManufactureDeviation.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::ArrayManufacture.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::ArrayGroup.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::Array.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array.3pm
Installing /build/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE.3pm
make[1]: Leaving directory '/build/libbio-mage-perl-20030502.3'
dh_installdocs
dh_installchangelogs
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'libbio-mage-perl' in '../libbio-mage-perl_20030502.3-6_all.deb'.
dpkg-genbuildinfo --build=binary -O../libbio-mage-perl_20030502.3-6_amd64.buildinfo
dpkg-genchanges --build=binary -O../libbio-mage-perl_20030502.3-6_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/3868097 and its subdirectories
I: Current time: Wed Jul 10 09:44:36 -12 2024
I: pbuilder-time-stamp: 1720647876