I: pbuilder: network access will be disabled during build
I: Current time: Fri Jun 21 21:41:05 -12 2024
I: pbuilder-time-stamp: 1719049265
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [r-bioc-ballgown_2.30.0+dfsg-1.dsc]
I: copying [./r-bioc-ballgown_2.30.0+dfsg.orig.tar.xz]
I: copying [./r-bioc-ballgown_2.30.0+dfsg-1.debian.tar.xz]
I: Extracting source
gpgv: Signature made Mon Nov 21 18:25:44 2022 -12
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./r-bioc-ballgown_2.30.0+dfsg-1.dsc: no acceptable signature found
dpkg-source: info: extracting r-bioc-ballgown in r-bioc-ballgown-2.30.0+dfsg
dpkg-source: info: unpacking r-bioc-ballgown_2.30.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-bioc-ballgown_2.30.0+dfsg-1.debian.tar.xz
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/584897/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='amd64'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 '
  DISTRIBUTION='bookworm'
  HOME='/root'
  HOST_ARCH='amd64'
  IFS=' 	
  '
  INVOCATION_ID='2d4f3209829d420b825e5f604387880d'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='584897'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.0lqMeEyS/pbuilderrc_4M1X --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.0lqMeEyS/b1 --logfile b1/build.log r-bioc-ballgown_2.30.0+dfsg-1.dsc'
  SUDO_GID='111'
  SUDO_UID='106'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
  http_proxy='http://85.184.249.68:3128'
I: uname -a
  Linux ionos15-amd64 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux
I: ls -l /bin
  total 5632
  -rwxr-xr-x 1 root root 1265648 Apr 23  2023 bash
  -rwxr-xr-x 3 root root   39224 Sep 18  2022 bunzip2
  -rwxr-xr-x 3 root root   39224 Sep 18  2022 bzcat
  lrwxrwxrwx 1 root root       6 Sep 18  2022 bzcmp -> bzdiff
  -rwxr-xr-x 1 root root    2225 Sep 18  2022 bzdiff
  lrwxrwxrwx 1 root root       6 Sep 18  2022 bzegrep -> bzgrep
  -rwxr-xr-x 1 root root    4893 Nov 27  2021 bzexe
  lrwxrwxrwx 1 root root       6 Sep 18  2022 bzfgrep -> bzgrep
  -rwxr-xr-x 1 root root    3775 Sep 18  2022 bzgrep
  -rwxr-xr-x 3 root root   39224 Sep 18  2022 bzip2
  -rwxr-xr-x 1 root root   14568 Sep 18  2022 bzip2recover
  lrwxrwxrwx 1 root root       6 Sep 18  2022 bzless -> bzmore
  -rwxr-xr-x 1 root root    1297 Sep 18  2022 bzmore
  -rwxr-xr-x 1 root root   44016 Sep 20  2022 cat
  -rwxr-xr-x 1 root root   68656 Sep 20  2022 chgrp
  -rwxr-xr-x 1 root root   64496 Sep 20  2022 chmod
  -rwxr-xr-x 1 root root   72752 Sep 20  2022 chown
  -rwxr-xr-x 1 root root  151152 Sep 20  2022 cp
  -rwxr-xr-x 1 root root  125640 Jan  5  2023 dash
  -rwxr-xr-x 1 root root  121904 Sep 20  2022 date
  -rwxr-xr-x 1 root root   89240 Sep 20  2022 dd
  -rwxr-xr-x 1 root root  102200 Sep 20  2022 df
  -rwxr-xr-x 1 root root  151344 Sep 20  2022 dir
  -rwxr-xr-x 1 root root   88656 Mar 22  2023 dmesg
  lrwxrwxrwx 1 root root       8 Dec 19  2022 dnsdomainname -> hostname
  lrwxrwxrwx 1 root root       8 Dec 19  2022 domainname -> hostname
  -rwxr-xr-x 1 root root   43856 Sep 20  2022 echo
  -rwxr-xr-x 1 root root      41 Jan 24  2023 egrep
  -rwxr-xr-x 1 root root   35664 Sep 20  2022 false
  -rwxr-xr-x 1 root root      41 Jan 24  2023 fgrep
  -rwxr-xr-x 1 root root   85600 Mar 22  2023 findmnt
  -rwsr-xr-x 1 root root   35128 Mar 22  2023 fusermount
  -rwxr-xr-x 1 root root  203152 Jan 24  2023 grep
  -rwxr-xr-x 2 root root    2346 Apr  9  2022 gunzip
  -rwxr-xr-x 1 root root    6447 Apr  9  2022 gzexe
  -rwxr-xr-x 1 root root   98136 Apr  9  2022 gzip
  -rwxr-xr-x 1 root root   22680 Dec 19  2022 hostname
  -rwxr-xr-x 1 root root   72824 Sep 20  2022 ln
  -rwxr-xr-x 1 root root   53024 Mar 23  2023 login
  -rwxr-xr-x 1 root root  151344 Sep 20  2022 ls
  -rwxr-xr-x 1 root root  207168 Mar 22  2023 lsblk
  -rwxr-xr-x 1 root root   97552 Sep 20  2022 mkdir
  -rwxr-xr-x 1 root root   72912 Sep 20  2022 mknod
  -rwxr-xr-x 1 root root   43952 Sep 20  2022 mktemp
  -rwxr-xr-x 1 root root   59712 Mar 22  2023 more
  -rwsr-xr-x 1 root root   59704 Mar 22  2023 mount
  -rwxr-xr-x 1 root root   18744 Mar 22  2023 mountpoint
  -rwxr-xr-x 1 root root  142968 Sep 20  2022 mv
  lrwxrwxrwx 1 root root       8 Dec 19  2022 nisdomainname -> hostname
  lrwxrwxrwx 1 root root      14 Apr  2  2023 pidof -> /sbin/killall5
  -rwxr-xr-x 1 root root   43952 Sep 20  2022 pwd
  lrwxrwxrwx 1 root root       4 Apr 23  2023 rbash -> bash
  -rwxr-xr-x 1 root root   52112 Sep 20  2022 readlink
  -rwxr-xr-x 1 root root   72752 Sep 20  2022 rm
  -rwxr-xr-x 1 root root   56240 Sep 20  2022 rmdir
  -rwxr-xr-x 1 root root   27560 Nov  2  2022 run-parts
  -rwxr-xr-x 1 root root  126424 Jan  5  2023 sed
  lrwxrwxrwx 1 root root       4 Jan  5  2023 sh -> dash
  -rwxr-xr-x 1 root root   43888 Sep 20  2022 sleep
  -rwxr-xr-x 1 root root   85008 Sep 20  2022 stty
  -rwsr-xr-x 1 root root   72000 Mar 22  2023 su
  -rwxr-xr-x 1 root root   39824 Sep 20  2022 sync
  -rwxr-xr-x 1 root root  531984 Apr  6  2023 tar
  -rwxr-xr-x 1 root root   14520 Nov  2  2022 tempfile
  -rwxr-xr-x 1 root root  109616 Sep 20  2022 touch
  -rwxr-xr-x 1 root root   35664 Sep 20  2022 true
  -rwxr-xr-x 1 root root   14568 Mar 22  2023 ulockmgr_server
  -rwsr-xr-x 1 root root   35128 Mar 22  2023 umount
  -rwxr-xr-x 1 root root   43888 Sep 20  2022 uname
  -rwxr-xr-x 2 root root    2346 Apr  9  2022 uncompress
  -rwxr-xr-x 1 root root  151344 Sep 20  2022 vdir
  -rwxr-xr-x 1 root root   72024 Mar 22  2023 wdctl
  lrwxrwxrwx 1 root root       8 Dec 19  2022 ypdomainname -> hostname
  -rwxr-xr-x 1 root root    1984 Apr  9  2022 zcat
  -rwxr-xr-x 1 root root    1678 Apr  9  2022 zcmp
  -rwxr-xr-x 1 root root    6460 Apr  9  2022 zdiff
  -rwxr-xr-x 1 root root      29 Apr  9  2022 zegrep
  -rwxr-xr-x 1 root root      29 Apr  9  2022 zfgrep
  -rwxr-xr-x 1 root root    2081 Apr  9  2022 zforce
  -rwxr-xr-x 1 root root    8103 Apr  9  2022 zgrep
  -rwxr-xr-x 1 root root    2206 Apr  9  2022 zless
  -rwxr-xr-x 1 root root    1842 Apr  9  2022 zmore
  -rwxr-xr-x 1 root root    4577 Apr  9  2022 znew
I: user script /srv/workspace/pbuilder/584897/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-genomicranges, r-bioc-iranges, r-bioc-s4vectors, r-cran-rcolorbrewer, r-bioc-sva, r-bioc-limma, r-bioc-rtracklayer, r-bioc-biobase, r-bioc-genomeinfodb, r-cran-knitr, r-cran-markdown
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19596 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on dh-r; however:
  Package dh-r is not installed.
 pbuilder-satisfydepends-dummy depends on r-base-dev; however:
  Package r-base-dev is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-genomicranges; however:
  Package r-bioc-genomicranges is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-iranges; however:
  Package r-bioc-iranges is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors; however:
  Package r-bioc-s4vectors is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-rcolorbrewer; however:
  Package r-cran-rcolorbrewer is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-sva; however:
  Package r-bioc-sva is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-limma; however:
  Package r-bioc-limma is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-rtracklayer; however:
  Package r-bioc-rtracklayer is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-biobase; however:
  Package r-bioc-biobase is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-genomeinfodb; however:
  Package r-bioc-genomeinfodb is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-knitr; however:
  Package r-cran-knitr is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-markdown; however:
  Package r-cran-markdown is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-12{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcurl3-gnutls{a} libcurl4{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-12-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-mathjax{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnghttp2-14{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre16-3{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpcre3{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16{a} libpsl5{a} libreadline-dev{a} libreadline8{a} libregexp-ipv6-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsm6{a} libssh2-1{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6{a} littler{a} m4{a} man-db{a} node-normalize.css{a} openssl{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-annotate{a} r-bioc-annotationdbi{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-biocio{a} r-bioc-biocparallel{a} r-bioc-biostrings{a} r-bioc-delayedarray{a} r-bioc-edger{a} r-bioc-genefilter{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-genomicalignments{a} r-bioc-genomicranges{a} r-bioc-iranges{a} r-bioc-keggrest{a} r-bioc-limma{a} r-bioc-matrixgenerics{a} r-bioc-rhtslib{a} r-bioc-rsamtools{a} r-bioc-rtracklayer{a} r-bioc-s4vectors{a} r-bioc-summarizedexperiment{a} r-bioc-sva{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-askpass{a} r-cran-bh{a} r-cran-bit{a} r-cran-bit64{a} r-cran-bitops{a} r-cran-blob{a} r-cran-cachem{a} r-cran-cli{a} r-cran-codetools{a} r-cran-commonmark{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-curl{a} r-cran-dbi{a} r-cran-evaluate{a} r-cran-fastmap{a} r-cran-formatr{a} r-cran-futile.logger{a} r-cran-futile.options{a} r-cran-glue{a} r-cran-highr{a} r-cran-httr{a} r-cran-jsonlite{a} r-cran-knitr{a} r-cran-lambda.r{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-locfit{a} r-cran-markdown{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-memoise{a} r-cran-mgcv{a} r-cran-mime{a} r-cran-nlme{a} r-cran-openssl{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plogr{a} r-cran-png{a} r-cran-r6{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcurl{a} r-cran-restfulr{a} r-cran-rjson{a} r-cran-rlang{a} r-cran-rsqlite{a} r-cran-snow{a} r-cran-survival{a} r-cran-sys{a} r-cran-vctrs{a} r-cran-xfun{a} r-cran-xml{a} r-cran-xtable{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  bzip2-doc cme curl devscripts git-buildpackage javascript-common libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx node-highlight.js publicsuffix r-cran-brio r-cran-class r-cran-dbitest r-cran-decor r-cran-dplyr r-cran-generics r-cran-httpuv r-cran-mockery r-cran-progress r-cran-rmarkdown r-cran-runit r-cran-sodium r-cran-sp r-cran-testit r-cran-testthat r-cran-tibble r-cran-tikzdevice r-cran-tinytex r-cran-waldo r-cran-webutils r-cran-withr r-cran-xml2 r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 
0 packages upgraded, 271 newly installed, 0 to remove and 0 not upgraded.
Need to get 222 MB of archives. After unpacking 664 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB]
Get: 2 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 3 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.8-1 [1407 kB]
Get: 4 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB]
Get: 5 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB]
Get: 6 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB]
Get: 7 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB]
Get: 8 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB]
Get: 9 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB]
Get: 10 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB]
Get: 11 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB]
Get: 12 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB]
Get: 13 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB]
Get: 14 http://deb.debian.org/debian bookworm/main amd64 ucf all 3.0043+nmu1 [55.2 kB]
Get: 15 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB]
Get: 16 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB]
Get: 17 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 18 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get: 19 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB]
Get: 20 http://deb.debian.org/debian bookworm/main amd64 dctrl-tools amd64 2.24-3+b1 [104 kB]
Get: 21 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 22 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB]
Get: 23 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 24 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 25 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B]
Get: 26 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 27 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 28 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB]
Get: 29 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB]
Get: 30 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB]
Get: 31 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB]
Get: 32 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB]
Get: 33 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 34 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 35 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB]
Get: 36 http://deb.debian.org/debian bookworm/main amd64 zip amd64 3.0-13 [230 kB]
Get: 37 http://deb.debian.org/debian bookworm/main amd64 unzip amd64 6.0-28 [166 kB]
Get: 38 http://deb.debian.org/debian bookworm/main amd64 libpaper1 amd64 1.1.29 [12.5 kB]
Get: 39 http://deb.debian.org/debian bookworm/main amd64 libpaper-utils amd64 1.1.29 [8868 B]
Get: 40 http://deb.debian.org/debian bookworm/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB]
Get: 41 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB]
Get: 42 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB]
Get: 43 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB]
Get: 44 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB]
Get: 45 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5 [399 kB]
Get: 46 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB]
Get: 47 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB]
Get: 48 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB]
Get: 49 http://deb.debian.org/debian bookworm/main amd64 libpixman-1-0 amd64 0.42.2-1 [546 kB]
Get: 50 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB]
Get: 51 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB]
Get: 52 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB]
Get: 53 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB]
Get: 54 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2 [292 kB]
Get: 55 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2 [759 kB]
Get: 56 http://deb.debian.org/debian bookworm/main amd64 libxcb-render0 amd64 1.15-1 [115 kB]
Get: 57 http://deb.debian.org/debian bookworm/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB]
Get: 58 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB]
Get: 59 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB]
Get: 60 http://deb.debian.org/debian bookworm/main amd64 libcairo2 amd64 1.16.0-7 [575 kB]
Get: 61 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB]
Get: 62 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB]
Get: 63 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB]
Get: 64 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB]
Get: 65 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB]
Get: 66 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB]
Get: 67 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB]
Get: 68 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-9 [386 kB]
Get: 69 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2 [1398 kB]
Get: 70 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB]
Get: 71 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB]
Get: 72 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB]
Get: 73 http://deb.debian.org/debian bookworm/main amd64 fontconfig amd64 2.14.1-4 [449 kB]
Get: 74 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB]
Get: 75 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB]
Get: 76 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB]
Get: 77 http://deb.debian.org/debian bookworm/main amd64 libthai-data all 0.1.29-1 [176 kB]
Get: 78 http://deb.debian.org/debian bookworm/main amd64 libdatrie1 amd64 0.2.13-2+b1 [43.3 kB]
Get: 79 http://deb.debian.org/debian bookworm/main amd64 libthai0 amd64 0.1.29-1 [57.5 kB]
Get: 80 http://deb.debian.org/debian bookworm/main amd64 libpango-1.0-0 amd64 1.50.12+ds-1 [212 kB]
Get: 81 http://deb.debian.org/debian bookworm/main amd64 libpangoft2-1.0-0 amd64 1.50.12+ds-1 [47.4 kB]
Get: 82 http://deb.debian.org/debian bookworm/main amd64 libpangocairo-1.0-0 amd64 1.50.12+ds-1 [34.2 kB]
Get: 83 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB]
Get: 84 http://deb.debian.org/debian bookworm/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [1035 kB]
Get: 85 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB]
Get: 86 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB]
Get: 87 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB]
Get: 88 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.1 [285 kB]
Get: 89 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-5 [316 kB]
Get: 90 http://deb.debian.org/debian bookworm/main amd64 libxft2 amd64 2.3.6-1 [61.8 kB]
Get: 91 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB]
Get: 92 http://deb.debian.org/debian bookworm/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB]
Get: 93 http://deb.debian.org/debian bookworm/main amd64 libtk8.6 amd64 8.6.13-2 [781 kB]
Get: 94 http://deb.debian.org/debian bookworm/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB]
Get: 95 http://deb.debian.org/debian bookworm/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB]
Get: 96 http://deb.debian.org/debian bookworm/main amd64 libxt6 amd64 1:1.2.1-1.1 [186 kB]
Get: 97 http://deb.debian.org/debian bookworm/main amd64 r-base-core amd64 4.2.2.20221110-2 [26.0 MB]
Get: 98 http://deb.debian.org/debian bookworm/main amd64 libgfortran-12-dev amd64 12.2.0-14 [834 kB]
Get: 99 http://deb.debian.org/debian bookworm/main amd64 gfortran-12 amd64 12.2.0-14 [10.2 MB]
Get: 100 http://deb.debian.org/debian bookworm/main amd64 gfortran amd64 4:12.2.0-3 [1428 B]
Get: 101 http://deb.debian.org/debian bookworm/main amd64 libblas-dev amd64 3.11.0-2 [158 kB]
Get: 102 http://deb.debian.org/debian bookworm/main amd64 liblapack-dev amd64 3.11.0-2 [4631 kB]
Get: 103 http://deb.debian.org/debian bookworm/main amd64 libncurses6 amd64 6.4-4 [103 kB]
Get: 104 http://deb.debian.org/debian bookworm/main amd64 libncurses-dev amd64 6.4-4 [349 kB]
Get: 105 http://deb.debian.org/debian bookworm/main amd64 libncurses5-dev amd64 6.4-4 [932 B]
Get: 106 http://deb.debian.org/debian bookworm/main amd64 libreadline-dev amd64 8.2-1.3 [151 kB]
Get: 107 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-2 [290 kB]
Get: 108 http://deb.debian.org/debian bookworm/main amd64 libjpeg-dev amd64 1:2.1.5-2 [71.8 kB]
Get: 109 http://deb.debian.org/debian bookworm/main amd64 libpcre2-16-0 amd64 10.42-1 [245 kB]
Get: 110 http://deb.debian.org/debian bookworm/main amd64 libpcre2-32-0 amd64 10.42-1 [234 kB]
Get: 111 http://deb.debian.org/debian bookworm/main amd64 libpcre2-posix3 amd64 10.42-1 [55.4 kB]
Get: 112 http://deb.debian.org/debian bookworm/main amd64 libpcre2-dev amd64 10.42-1 [753 kB]
Get: 113 http://deb.debian.org/debian bookworm/main amd64 libpcre3 amd64 2:8.39-15 [341 kB]
Get: 114 http://deb.debian.org/debian bookworm/main amd64 libpcre16-3 amd64 2:8.39-15 [257 kB]
Get: 115 http://deb.debian.org/debian bookworm/main amd64 libpcre32-3 amd64 2:8.39-15 [248 kB]
Get: 116 http://deb.debian.org/debian bookworm/main amd64 libpcrecpp0v5 amd64 2:8.39-15 [143 kB]
Get: 117 http://deb.debian.org/debian bookworm/main amd64 libpcre3-dev amd64 2:8.39-15 [653 kB]
Get: 118 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB]
Get: 119 http://deb.debian.org/debian bookworm/main amd64 libpng-dev amd64 1.6.39-2 [359 kB]
Get: 120 http://deb.debian.org/debian bookworm/main amd64 libbz2-dev amd64 1.0.8-5+b1 [30.9 kB]
Get: 121 http://deb.debian.org/debian bookworm/main amd64 liblzma-dev amd64 5.4.1-0.2 [260 kB]
Get: 122 http://deb.debian.org/debian bookworm/main amd64 icu-devtools amd64 72.1-3 [206 kB]
Get: 123 http://deb.debian.org/debian bookworm/main amd64 libicu-dev amd64 72.1-3 [10.3 MB]
Get: 124 http://deb.debian.org/debian bookworm/main amd64 libxmuu1 amd64 2:1.1.3-3 [23.9 kB]
Get: 125 http://deb.debian.org/debian bookworm/main amd64 xauth amd64 1:1.1.2-1 [36.0 kB]
Get: 126 http://deb.debian.org/debian bookworm/main amd64 libpkgconf3 amd64 1.8.1-1 [36.1 kB]
Get: 127 http://deb.debian.org/debian bookworm/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB]
Get: 128 http://deb.debian.org/debian bookworm/main amd64 pkgconf amd64 1.8.1-1 [25.9 kB]
Get: 129 http://deb.debian.org/debian bookworm/main amd64 pkg-config amd64 1.8.1-1 [13.7 kB]
Get: 130 http://deb.debian.org/debian bookworm/main amd64 r-base-dev all 4.2.2.20221110-2 [4492 B]
Get: 131 http://deb.debian.org/debian bookworm/main amd64 libfile-which-perl all 1.27-2 [15.1 kB]
Get: 132 http://deb.debian.org/debian bookworm/main amd64 libswitch-perl all 2.17-3 [20.3 kB]
Get: 133 http://deb.debian.org/debian bookworm/main amd64 libclone-perl amd64 0.46-1 [13.7 kB]
Get: 134 http://deb.debian.org/debian bookworm/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB]
Get: 135 http://deb.debian.org/debian bookworm/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB]
Get: 136 http://deb.debian.org/debian bookworm/main amd64 libhttp-date-perl all 6.05-2 [10.5 kB]
Get: 137 http://deb.debian.org/debian bookworm/main amd64 libio-html-perl all 1.004-3 [16.2 kB]
Get: 138 http://deb.debian.org/debian bookworm/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get: 139 http://deb.debian.org/debian bookworm/main amd64 libregexp-ipv6-perl all 0.03-3 [5212 B]
Get: 140 http://deb.debian.org/debian bookworm/main amd64 liburi-perl all 5.17-1 [90.4 kB]
Get: 141 http://deb.debian.org/debian bookworm/main amd64 libhttp-message-perl all 6.44-1 [81.7 kB]
Get: 142 http://deb.debian.org/debian bookworm/main amd64 libparams-util-perl amd64 1.102-2+b1 [24.8 kB]
Get: 143 http://deb.debian.org/debian bookworm/main amd64 libsub-install-perl all 0.929-1 [10.5 kB]
Get: 144 http://deb.debian.org/debian bookworm/main amd64 libdata-optlist-perl all 0.113-1 [10.6 kB]
Get: 145 http://deb.debian.org/debian bookworm/main amd64 libb-hooks-op-check-perl amd64 0.22-2+b1 [10.5 kB]
Get: 146 http://deb.debian.org/debian bookworm/main amd64 libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get: 147 http://deb.debian.org/debian bookworm/main amd64 libdevel-callchecker-perl amd64 0.008-2 [15.8 kB]
Get: 148 http://deb.debian.org/debian bookworm/main amd64 libparams-classify-perl amd64 0.015-2+b1 [23.1 kB]
Get: 149 http://deb.debian.org/debian bookworm/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get: 150 http://deb.debian.org/debian bookworm/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB]
Get: 151 http://deb.debian.org/debian bookworm/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get: 152 http://deb.debian.org/debian bookworm/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB]
Get: 153 http://deb.debian.org/debian bookworm/main amd64 libclass-load-perl all 0.25-2 [15.3 kB]
Get: 154 http://deb.debian.org/debian bookworm/main amd64 libclass-load-xs-perl amd64 0.10-2+b1 [14.0 kB]
Get: 155 http://deb.debian.org/debian bookworm/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get: 156 http://deb.debian.org/debian bookworm/main amd64 libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get: 157 http://deb.debian.org/debian bookworm/main amd64 libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get: 158 http://deb.debian.org/debian bookworm/main amd64 libclass-c3-perl all 0.35-2 [21.0 kB]
Get: 159 http://deb.debian.org/debian bookworm/main amd64 libmro-compat-perl all 0.15-2 [11.8 kB]
Get: 160 http://deb.debian.org/debian bookworm/main amd64 libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get: 161 http://deb.debian.org/debian bookworm/main amd64 libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get: 162 http://deb.debian.org/debian bookworm/main amd64 libsub-exporter-perl all 0.989-1 [50.5 kB]
Get: 163 http://deb.debian.org/debian bookworm/main amd64 libeval-closure-perl all 0.14-3 [11.2 kB]
Get: 164 http://deb.debian.org/debian bookworm/main amd64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get: 165 http://deb.debian.org/debian bookworm/main amd64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get: 166 http://deb.debian.org/debian bookworm/main amd64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB]
Get: 167 http://deb.debian.org/debian bookworm/main amd64 libpackage-stash-xs-perl amd64 0.30-1+b1 [19.8 kB]
Get: 168 http://deb.debian.org/debian bookworm/main amd64 libmoose-perl amd64 2.2203-1 [794 kB]
Get: 169 http://deb.debian.org/debian bookworm/main amd64 libvariable-magic-perl amd64 0.63-1+b1 [44.0 kB]
Get: 170 http://deb.debian.org/debian bookworm/main amd64 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get: 171 http://deb.debian.org/debian bookworm/main amd64 libsub-identify-perl amd64 0.14-3 [10.9 kB]
Get: 172 http://deb.debian.org/debian bookworm/main amd64 libsub-name-perl amd64 0.26-2+b1 [12.6 kB]
Get: 173 http://deb.debian.org/debian bookworm/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get: 174 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.88.1-9 [381 kB]
Get: 175 http://deb.debian.org/debian bookworm/main amd64 libwww-curl-perl amd64 4.17-10 [58.3 kB]
Get: 176 http://deb.debian.org/debian bookworm/main amd64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get: 177 http://deb.debian.org/debian bookworm/main amd64 dh-r all 20230121 [37.9 kB]
Get: 178 http://deb.debian.org/debian bookworm/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB]
Get: 179 http://deb.debian.org/debian bookworm/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB]
Get: 180 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0+ds1-20 [9510 kB]
Get: 181 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B]
Get: 182 http://deb.debian.org/debian bookworm/main amd64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB]
Get: 183 http://deb.debian.org/debian bookworm/main amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [397 kB]
Get: 184 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 185 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB]
Get: 186 http://deb.debian.org/debian bookworm/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB]
Get: 187 http://deb.debian.org/debian bookworm/main amd64 r-cran-littler amd64 0.3.17-1 [96.3 kB]
Get: 188 http://deb.debian.org/debian bookworm/main amd64 littler all 0.3.17-1 [14.4 kB]
Get: 189 http://deb.debian.org/debian bookworm/main amd64 node-normalize.css all 8.0.1-5 [12.7 kB]
Get: 190 http://deb.debian.org/debian bookworm/main amd64 r-bioc-biocgenerics all 0.44.0-2 [600 kB]
Get: 191 http://deb.debian.org/debian bookworm/main amd64 r-bioc-biobase amd64 2.58.0-2 [2112 kB]
Get: 192 http://deb.debian.org/debian bookworm/main amd64 r-bioc-s4vectors amd64 0.36.1-1 [2026 kB]
Get: 193 http://deb.debian.org/debian bookworm/main amd64 r-bioc-iranges amd64 2.32.0-1 [2222 kB]
Get: 194 http://deb.debian.org/debian bookworm/main amd64 r-cran-dbi all 1.1.3-1 [687 kB]
Get: 195 http://deb.debian.org/debian bookworm/main amd64 r-cran-bit amd64 4.0.5-1 [1070 kB]
Get: 196 http://deb.debian.org/debian bookworm/main amd64 r-cran-bit64 amd64 4.0.5-1 [463 kB]
Get: 197 http://deb.debian.org/debian bookworm/main amd64 r-cran-rlang amd64 1.0.6-1 [1618 kB]
Get: 198 http://deb.debian.org/debian bookworm/main amd64 r-cran-cli amd64 3.6.0-1 [1287 kB]
Get: 199 http://deb.debian.org/debian bookworm/main amd64 r-cran-glue amd64 1.6.2-1 [152 kB]
Get: 200 http://deb.debian.org/debian bookworm/main amd64 r-cran-lifecycle all 1.0.3+dfsg-1 [109 kB]
Get: 201 http://deb.debian.org/debian bookworm/main amd64 r-cran-vctrs amd64 0.5.2-1 [1371 kB]
Get: 202 http://deb.debian.org/debian bookworm/main amd64 r-cran-blob all 1.2.3-1 [49.5 kB]
Get: 203 http://deb.debian.org/debian bookworm/main amd64 r-cran-fastmap amd64 1.1.1-1 [68.9 kB]
Get: 204 http://deb.debian.org/debian bookworm/main amd64 r-cran-cachem amd64 1.0.7-1 [71.6 kB]
Get: 205 http://deb.debian.org/debian bookworm/main amd64 r-cran-memoise all 2.0.1-1 [53.8 kB]
Get: 206 http://deb.debian.org/debian bookworm/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get: 207 http://deb.debian.org/debian bookworm/main amd64 r-cran-pkgkitten all 0.2.2-2 [27.0 kB]
Get: 208 http://deb.debian.org/debian bookworm/main amd64 r-cran-rcpp amd64 1.0.10-1 [2059 kB]
Get: 209 http://deb.debian.org/debian bookworm/main amd64 r-cran-plogr all 0.2.0-3 [14.9 kB]
Get: 210 http://deb.debian.org/debian bookworm/main amd64 r-cran-rsqlite amd64 2.2.20-1 [1123 kB]
Get: 211 http://deb.debian.org/debian bookworm/main amd64 r-cran-curl amd64 5.0.0+dfsg-1 [172 kB]
Get: 212 http://deb.debian.org/debian bookworm/main amd64 r-cran-jsonlite amd64 1.8.4+dfsg-1 [442 kB]
Get: 213 http://deb.debian.org/debian bookworm/main amd64 r-cran-mime amd64 0.12-1+b1 [36.0 kB]
Get: 214 http://deb.debian.org/debian bookworm/main amd64 r-cran-sys amd64 3.4.1-1 [42.7 kB]
Get: 215 http://deb.debian.org/debian bookworm/main amd64 r-cran-askpass amd64 1.1-2 [22.2 kB]
Get: 216 http://deb.debian.org/debian bookworm/main amd64 r-cran-openssl amd64 2.0.5+dfsg-1 [391 kB]
Get: 217 http://deb.debian.org/debian bookworm/main amd64 r-cran-r6 all 2.5.1-1 [105 kB]
Get: 218 http://deb.debian.org/debian bookworm/main amd64 r-cran-httr all 1.4.5+dfsg-1 [465 kB]
Get: 219 http://deb.debian.org/debian bookworm/main amd64 r-cran-png amd64 0.1-8-1 [41.1 kB]
Get: 220 http://deb.debian.org/debian bookworm/main amd64 r-bioc-zlibbioc all 1.44.0+dfsg-1 [9200 B]
Get: 221 http://deb.debian.org/debian bookworm/main amd64 r-bioc-xvector amd64 0.38.0-1 [618 kB]
Get: 222 http://deb.debian.org/debian bookworm/main amd64 r-cran-bitops amd64 1.0-7-1 [30.2 kB]
Get: 223 http://deb.debian.org/debian bookworm/main amd64 r-cran-rcurl amd64 1.98-1.10+dfsg-1 [783 kB]
Get: 224 http://deb.debian.org/debian bookworm/main amd64 r-bioc-genomeinfodbdata all 1.2.9-1 [11.7 MB]
Get: 225 http://deb.debian.org/debian bookworm/main amd64 r-bioc-genomeinfodb all 1.34.9-1 [3938 kB]
Get: 226 http://deb.debian.org/debian bookworm/main amd64 r-cran-crayon all 1.5.2-1 [165 kB]
Get: 227 http://deb.debian.org/debian bookworm/main amd64 r-bioc-biostrings amd64 2.66.0-1 [13.8 MB]
Get: 228 http://deb.debian.org/debian bookworm/main amd64 r-bioc-keggrest all 1.38.0+dfsg-1 [179 kB]
Get: 229 http://deb.debian.org/debian bookworm/main amd64 r-bioc-annotationdbi all 1.60.0-1 [4696 kB]
Get: 230 http://deb.debian.org/debian bookworm/main amd64 r-cran-xml amd64 3.99-0.13-1 [1717 kB]
Get: 231 http://deb.debian.org/debian bookworm/main amd64 r-cran-xtable all 1:1.8-4-2 [689 kB]
Get: 232 http://deb.debian.org/debian bookworm/main amd64 r-bioc-annotate all 1.76.0+dfsg-1 [1727 kB]
Get: 233 http://deb.debian.org/debian bookworm/main amd64 r-bioc-biocio all 1.8.0+dfsg-1 [201 kB]
Get: 234 http://deb.debian.org/debian bookworm/main amd64 r-cran-formatr all 1.14-1 [152 kB]
Get: 235 http://deb.debian.org/debian bookworm/main amd64 r-cran-lambda.r all 1.2.4-2 [118 kB]
Get: 236 http://deb.debian.org/debian bookworm/main amd64 r-cran-futile.options all 1.0.1-3 [20.0 kB]
Get: 237 http://deb.debian.org/debian bookworm/main amd64 r-cran-futile.logger all 1.4.3-4 [98.4 kB]
Get: 238 http://deb.debian.org/debian bookworm/main amd64 r-cran-snow all 1:0.4.4-2 [98.9 kB]
Get: 239 http://deb.debian.org/debian bookworm/main amd64 r-cran-codetools all 0.2-19-1 [90.9 kB]
Get: 240 http://deb.debian.org/debian bookworm/main amd64 r-cran-bh all 1.74.0-2 [5524 B]
Get: 241 http://deb.debian.org/debian bookworm/main amd64 r-cran-cpp11 all 0.4.3-1 [223 kB]
Get: 242 http://deb.debian.org/debian bookworm/main amd64 r-bioc-biocparallel amd64 1.32.5-1 [1337 kB]
Get: 243 http://deb.debian.org/debian bookworm/main amd64 r-cran-lattice amd64 0.20-45-3 [1177 kB]
Get: 244 http://deb.debian.org/debian bookworm/main amd64 r-cran-matrix amd64 1.5-3-1 [3822 kB]
Get: 245 http://deb.debian.org/debian bookworm/main amd64 r-cran-matrixstats amd64 0.63.0-1 [470 kB]
Get: 246 http://deb.debian.org/debian bookworm/main amd64 r-bioc-matrixgenerics all 1.10.0-1 [302 kB]
Get: 247 http://deb.debian.org/debian bookworm/main amd64 r-bioc-delayedarray amd64 0.24.0+dfsg-1 [1937 kB]
Get: 248 http://deb.debian.org/debian bookworm/main amd64 r-bioc-limma amd64 3.54.1+dfsg-1 [1768 kB]
Get: 249 http://deb.debian.org/debian bookworm/main amd64 r-cran-locfit amd64 1.5-9.7-1 [507 kB]
Get: 250 http://deb.debian.org/debian bookworm/main amd64 r-bioc-edger amd64 3.40.2+dfsg-1 [1093 kB]
Get: 251 http://deb.debian.org/debian bookworm/main amd64 r-cran-survival amd64 3.5-3-1 [5910 kB]
Get: 252 http://deb.debian.org/debian bookworm/main amd64 r-bioc-genefilter amd64 1.80.3-1 [1042 kB]
Get: 253 http://deb.debian.org/debian bookworm/main amd64 r-bioc-genomicranges amd64 1.50.2+dfsg-1 [1796 kB]
Get: 254 http://deb.debian.org/debian bookworm/main amd64 r-bioc-summarizedexperiment all 1.28.0+dfsg-1 [2018 kB]
Get: 255 http://deb.debian.org/debian bookworm/main amd64 r-bioc-rhtslib amd64 2.0.0+dfsg-1 [1287 kB]
Get: 256 http://deb.debian.org/debian bookworm/main amd64 r-bioc-rsamtools amd64 2.14.0-1 [3755 kB]
Get: 257 http://deb.debian.org/debian bookworm/main amd64 r-bioc-genomicalignments amd64 1.34.0-1 [2112 kB]
Get: 258 http://deb.debian.org/debian bookworm/main amd64 r-cran-rjson amd64 0.2.21-1 [139 kB]
Get: 259 http://deb.debian.org/debian bookworm/main amd64 r-cran-yaml amd64 2.3.7-1 [104 kB]
Get: 260 http://deb.debian.org/debian bookworm/main amd64 r-cran-restfulr amd64 0.0.15-1 [382 kB]
Get: 261 http://deb.debian.org/debian bookworm/main amd64 r-bioc-rtracklayer amd64 1.58.0-1 [5104 kB]
Get: 262 http://deb.debian.org/debian bookworm/main amd64 r-cran-nlme amd64 3.1.162-1 [2260 kB]
Get: 263 http://deb.debian.org/debian bookworm/main amd64 r-cran-mgcv amd64 1.8-41-1 [3171 kB]
Get: 264 http://deb.debian.org/debian bookworm/main amd64 r-bioc-sva amd64 3.46.0-1 [443 kB]
Get: 265 http://deb.debian.org/debian bookworm/main amd64 r-cran-commonmark amd64 1.8.1-1 [117 kB]
Get: 266 http://deb.debian.org/debian bookworm/main amd64 r-cran-evaluate all 0.20-1 [85.9 kB]
Get: 267 http://deb.debian.org/debian bookworm/main amd64 r-cran-xfun amd64 0.37+dfsg-1 [394 kB]
Get: 268 http://deb.debian.org/debian bookworm/main amd64 r-cran-highr all 0.10+dfsg-1 [38.1 kB]
Get: 269 http://deb.debian.org/debian bookworm/main amd64 r-cran-knitr all 1.42+dfsg-1 [901 kB]
Get: 270 http://deb.debian.org/debian bookworm/main amd64 r-cran-markdown all 1.5+dfsg-1 [121 kB]
Get: 271 http://deb.debian.org/debian bookworm/main amd64 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB]
Fetched 222 MB in 3s (66.1 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package readline-common.
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Preparing to unpack .../000-readline-common_8.2-1.3_all.deb ...
Unpacking readline-common (8.2-1.3) ...
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Unpacking sensible-utils (0.0.17+nmu1) ...
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Unpacking openssl (3.0.8-1) ...
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Unpacking ca-certificates (20230311) ...
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Unpacking libmagic-mgc (1:5.44-3) ...
Selecting previously unselected package libmagic1:amd64.
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Unpacking libmagic1:amd64 (1:5.44-3) ...
Selecting previously unselected package file.
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Unpacking file (1:5.44-3) ...
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Unpacking gettext-base (0.21-12) ...
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Unpacking libuchardet0:amd64 (0.0.7-1) ...
Selecting previously unselected package groff-base.
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Unpacking groff-base (1.22.4-10) ...
Selecting previously unselected package bsdextrautils.
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Unpacking bsdextrautils (2.38.1-5+b1) ...
Selecting previously unselected package libpipeline1:amd64.
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Unpacking libpipeline1:amd64 (1.5.7-1) ...
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Unpacking man-db (2.11.2-2) ...
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Moving old data out of the way
Unpacking ucf (3.0043+nmu1) ...
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Unpacking m4 (1.4.19-3) ...
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Unpacking autoconf (2.71-3) ...
Selecting previously unselected package autotools-dev.
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Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
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Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
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Unpacking autopoint (0.21-12) ...
Selecting previously unselected package dctrl-tools.
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Unpacking dctrl-tools (2.24-3+b1) ...
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Unpacking libdebhelper-perl (13.11.4) ...
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Unpacking libtool (2.4.7-5) ...
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Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
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Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
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Unpacking libsub-override-perl (0.09-4) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../025-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
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Unpacking dh-strip-nondeterminism (1.13.1-1) ...
Selecting previously unselected package libelf1:amd64.
Preparing to unpack .../027-libelf1_0.188-2.1_amd64.deb ...
Unpacking libelf1:amd64 (0.188-2.1) ...
Selecting previously unselected package dwz.
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Unpacking dwz (0.15-1) ...
Selecting previously unselected package libicu72:amd64.
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Unpacking libicu72:amd64 (72.1-3) ...
Selecting previously unselected package libxml2:amd64.
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Unpacking libxml2:amd64 (2.9.14+dfsg-1.2) ...
Selecting previously unselected package gettext.
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Unpacking gettext (0.21-12) ...
Selecting previously unselected package intltool-debian.
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Selecting previously unselected package po-debconf.
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Selecting previously unselected package zip.
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Unpacking zip (3.0-13) ...
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Unpacking unzip (6.0-28) ...
Selecting previously unselected package libpaper1:amd64.
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Unpacking libpaper1:amd64 (1.1.29) ...
Selecting previously unselected package libpaper-utils.
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Unpacking libpaper-utils (1.1.29) ...
Selecting previously unselected package xdg-utils.
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Unpacking xdg-utils (1.1.3-4.1) ...
Selecting previously unselected package libblas3:amd64.
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Unpacking libblas3:amd64 (3.11.0-2) ...
Selecting previously unselected package libexpat1:amd64.
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Unpacking libexpat1:amd64 (2.5.0-1) ...
Selecting previously unselected package libbrotli1:amd64.
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Unpacking libbrotli1:amd64 (1.0.9-2+b6) ...
Selecting previously unselected package libpng16-16:amd64.
Preparing to unpack .../043-libpng16-16_1.6.39-2_amd64.deb ...
Unpacking libpng16-16:amd64 (1.6.39-2) ...
Selecting previously unselected package libfreetype6:amd64.
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Unpacking libfreetype6:amd64 (2.12.1+dfsg-5) ...
Selecting previously unselected package fonts-dejavu-core.
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Unpacking fonts-dejavu-core (2.37-6) ...
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Unpacking fontconfig-config (2.14.1-4) ...
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Unpacking libfontconfig1:amd64 (2.14.1-4) ...
Selecting previously unselected package libpixman-1-0:amd64.
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Unpacking libpixman-1-0:amd64 (0.42.2-1) ...
Selecting previously unselected package libxau6:amd64.
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Unpacking libxau6:amd64 (1:1.0.9-1) ...
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Unpacking libbsd0:amd64 (0.11.7-2) ...
Selecting previously unselected package libxdmcp6:amd64.
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Unpacking libxdmcp6:amd64 (1:1.1.2-3) ...
Selecting previously unselected package libxcb1:amd64.
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Unpacking libxcb1:amd64 (1.15-1) ...
Selecting previously unselected package libx11-data.
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Unpacking libx11-data (2:1.8.4-2) ...
Selecting previously unselected package libx11-6:amd64.
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Unpacking libx11-6:amd64 (2:1.8.4-2) ...
Selecting previously unselected package libxcb-render0:amd64.
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Unpacking libxcb-render0:amd64 (1.15-1) ...
Selecting previously unselected package libxcb-shm0:amd64.
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Unpacking libxcb-shm0:amd64 (1.15-1) ...
Selecting previously unselected package libxext6:amd64.
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Unpacking libxext6:amd64 (2:1.3.4-1+b1) ...
Selecting previously unselected package libxrender1:amd64.
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Unpacking libxrender1:amd64 (1:0.9.10-1.1) ...
Selecting previously unselected package libcairo2:amd64.
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Unpacking libcairo2:amd64 (1.16.0-7) ...
Selecting previously unselected package libsasl2-modules-db:amd64.
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Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ...
Selecting previously unselected package libsasl2-2:amd64.
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Unpacking libsasl2-2:amd64 (2.1.28+dfsg-10) ...
Selecting previously unselected package libldap-2.5-0:amd64.
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Unpacking libldap-2.5-0:amd64 (2.5.13+dfsg-5) ...
Selecting previously unselected package libnghttp2-14:amd64.
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Unpacking libnghttp2-14:amd64 (1.52.0-1) ...
Selecting previously unselected package libpsl5:amd64.
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Unpacking libpsl5:amd64 (0.21.2-1) ...
Selecting previously unselected package librtmp1:amd64.
Preparing to unpack .../065-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ...
Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ...
Selecting previously unselected package libssh2-1:amd64.
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Unpacking libssh2-1:amd64 (1.10.0-3+b1) ...
Selecting previously unselected package libcurl4:amd64.
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Unpacking libcurl4:amd64 (7.88.1-9) ...
Selecting previously unselected package libglib2.0-0:amd64.
Preparing to unpack .../068-libglib2.0-0_2.74.6-2_amd64.deb ...
Unpacking libglib2.0-0:amd64 (2.74.6-2) ...
Selecting previously unselected package libjpeg62-turbo:amd64.
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Unpacking libjpeg62-turbo:amd64 (1:2.1.5-2) ...
Selecting previously unselected package libgfortran5:amd64.
Preparing to unpack .../070-libgfortran5_12.2.0-14_amd64.deb ...
Unpacking libgfortran5:amd64 (12.2.0-14) ...
Selecting previously unselected package liblapack3:amd64.
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Unpacking liblapack3:amd64 (3.11.0-2) ...
Selecting previously unselected package fontconfig.
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Unpacking fontconfig (2.14.1-4) ...
Selecting previously unselected package libfribidi0:amd64.
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Unpacking libfribidi0:amd64 (1.0.8-2.1) ...
Selecting previously unselected package libgraphite2-3:amd64.
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Unpacking libgraphite2-3:amd64 (1.3.14-1) ...
Selecting previously unselected package libharfbuzz0b:amd64.
Preparing to unpack .../075-libharfbuzz0b_6.0.0+dfsg-3_amd64.deb ...
Unpacking libharfbuzz0b:amd64 (6.0.0+dfsg-3) ...
Selecting previously unselected package libthai-data.
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Unpacking libthai-data (0.1.29-1) ...
Selecting previously unselected package libdatrie1:amd64.
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Unpacking libdatrie1:amd64 (0.2.13-2+b1) ...
Selecting previously unselected package libthai0:amd64.
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Setting up libpng-dev:amd64 (1.6.39-2) ...
Setting up libjpeg-dev:amd64 (1:2.1.5-2) ...
Setting up libgfortran-12-dev:amd64 (12.2.0-14) ...
Setting up libxcb-shm0:amd64 (1.15-1) ...
Setting up libclass-c3-perl (0.35-2) ...
Setting up libreadline-dev:amd64 (8.2-1.3) ...
Setting up libdevel-callchecker-perl:amd64 (0.008-2) ...
Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ...
Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ...
Setting up pkgconf:amd64 (1.8.1-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:amd64 (0.1.29-1) ...
Setting up ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
140 added, 0 removed; done.
Setting up gfortran-12 (12.2.0-14) ...
Setting up libfreetype6:amd64 (2.12.1+dfsg-5) ...
Setting up liblapack-dev:amd64 (3.11.0-2) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
Setting up libdata-optlist-perl (0.113-1) ...
Setting up pkg-config:amd64 (1.8.1-1) ...
Setting up ucf (3.0043+nmu1) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.22.4-10) ...
Setting up libncurses5-dev:amd64 (6.4-4) ...
Setting up libcurl4:amd64 (7.88.1-9) ...
Setting up libx11-6:amd64 (2:1.8.4-2) ...
Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ...
Setting up libfontconfig1:amd64 (2.14.1-4) ...
Setting up libmro-compat-perl (0.15-2) ...
Setting up libsm6:amd64 (2:1.2.3-1) ...
Setting up libxmuu1:amd64 (2:1.1.3-3) ...
Setting up libsub-exporter-perl (0.989-1) ...
Setting up libhttp-message-perl (6.44-1) ...
Setting up libeval-closure-perl (0.14-3) ...
Setting up libpaper1:amd64 (1.1.29) ...

Creating config file /etc/papersize with new version
Setting up fontconfig (2.14.1-4) ...
Regenerating fonts cache... done.
Setting up libxrender1:amd64 (1:0.9.10-1.1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl:amd64 (0.015-2+b1) ...
Setting up libpango-1.0-0:amd64 (1.50.12+ds-1) ...
Setting up libxext6:amd64 (2:1.3.4-1+b1) ...
Setting up libcurl3-gnutls:amd64 (7.88.1-9) ...
Setting up libpaper-utils (1.1.29) ...
Setting up man-db (2.11.2-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:12.2.0-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libcairo2:amd64 (1.16.0-7) ...
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libdist-checkconflicts-perl (0.11-2) ...
Setting up libxt6:amd64 (1:1.2.1-1.1) ...
Setting up xauth (1:1.1.2-1) ...
Setting up libxss1:amd64 (1:1.2.3-1) ...
Setting up libpangoft2-1.0-0:amd64 (1.50.12+ds-1) ...
Setting up libpangocairo-1.0-0:amd64 (1.50.12+ds-1) ...
Setting up libxft2:amd64 (2.3.6-1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libtk8.6:amd64 (8.6.13-2) ...
Setting up libwww-curl-perl:amd64 (4.17-10) ...
Setting up debhelper (13.11.4) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up libclass-load-perl (0.25-2) ...
Setting up r-base-core (4.2.2.20221110-2) ...

Creating config file /etc/R/Renviron with new version
Setting up r-cran-crayon (1.5.2-1) ...
Setting up r-cran-futile.options (1.0.1-3) ...
Setting up r-cran-lattice (0.20-45-3) ...
Setting up r-cran-nlme (3.1.162-1) ...
Setting up r-cran-formatr (1.14-1) ...
Setting up r-cran-xml (3.99-0.13-1) ...
Setting up libpackage-deprecationmanager-perl (0.18-1) ...
Setting up r-cran-locfit (1.5-9.7-1) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b1) ...
Setting up r-cran-commonmark (1.8.1-1) ...
Setting up r-cran-r6 (2.5.1-1) ...
Setting up r-cran-pkgkitten (0.2.2-2) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up r-bioc-genomeinfodbdata (1.2.9-1) ...
Setting up r-cran-littler (0.3.17-1) ...
Setting up r-cran-rcpp (1.0.10-1) ...
Setting up r-cran-curl (5.0.0+dfsg-1) ...
Setting up r-cran-codetools (0.2-19-1) ...
Setting up r-bioc-biocgenerics (0.44.0-2) ...
Setting up r-cran-rlang (1.0.6-1) ...
Setting up r-cran-matrixstats (0.63.0-1) ...
Setting up r-base-dev (4.2.2.20221110-2) ...
Setting up littler (0.3.17-1) ...
Setting up r-bioc-matrixgenerics (1.10.0-1) ...
Setting up r-cran-xfun (0.37+dfsg-1) ...
Setting up r-cran-sys (3.4.1-1) ...
Setting up r-cran-plogr (0.2.0-3) ...
Setting up r-cran-mime (0.12-1+b1) ...
Setting up libmoose-perl:amd64 (2.2203-1) ...
Setting up r-cran-yaml (2.3.7-1) ...
Setting up r-cran-lambda.r (1.2.4-2) ...
Setting up r-cran-evaluate (0.20-1) ...
Setting up r-cran-dbi (1.1.3-1) ...
Setting up r-cran-highr (0.10+dfsg-1) ...
Setting up r-cran-snow (1:0.4.4-2) ...
Setting up r-cran-glue (1.6.2-1) ...
Setting up r-cran-bit (4.0.5-1) ...
Setting up r-cran-xtable (1:1.8-4-2) ...
Setting up r-cran-cli (3.6.0-1) ...
Setting up r-cran-lifecycle (1.0.3+dfsg-1) ...
Setting up r-cran-bitops (1.0-7-1) ...
Setting up r-cran-bit64 (4.0.5-1) ...
Setting up r-bioc-zlibbioc (1.44.0+dfsg-1) ...
Setting up r-cran-askpass (1.1-2) ...
Setting up r-cran-fastmap (1.1.1-1) ...
Setting up r-cran-png (0.1-8-1) ...
Setting up r-bioc-biobase (2.58.0-2) ...
Setting up r-cran-jsonlite (1.8.4+dfsg-1) ...
Setting up r-cran-pkgconfig (2.0.3-2) ...
Setting up r-cran-markdown (1.5+dfsg-1) ...
Setting up r-cran-cpp11 (0.4.3-1) ...
Setting up r-cran-rcolorbrewer (1.1-3-1) ...
Setting up r-bioc-s4vectors (0.36.1-1) ...
Setting up r-cran-futile.logger (1.4.3-4) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up r-bioc-limma (3.54.1+dfsg-1) ...
Setting up r-cran-matrix (1.5-3-1) ...
Setting up r-cran-knitr (1.42+dfsg-1) ...
Setting up r-cran-mgcv (1.8-41-1) ...
Setting up r-cran-cachem (1.0.7-1) ...
Setting up r-bioc-iranges (2.32.0-1) ...
Setting up r-cran-rjson (0.2.21-1) ...
Setting up r-cran-rcurl (1.98-1.10+dfsg-1) ...
Setting up r-cran-restfulr (0.0.15-1) ...
Setting up r-cran-vctrs (0.5.2-1) ...
Setting up r-bioc-delayedarray (0.24.0+dfsg-1) ...
Setting up r-cran-openssl (2.0.5+dfsg-1) ...
Setting up r-bioc-biocparallel (1.32.5-1) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Setting up r-bioc-edger (3.40.2+dfsg-1) ...
Setting up r-bioc-rhtslib (2.0.0+dfsg-1) ...
Setting up r-cran-survival (3.5-3-1) ...
Setting up r-bioc-biocio (1.8.0+dfsg-1) ...
Setting up r-bioc-genomeinfodb (1.34.9-1) ...
Setting up r-cran-httr (1.4.5+dfsg-1) ...
Setting up r-cran-memoise (2.0.1-1) ...
Setting up r-cran-blob (1.2.3-1) ...
Setting up r-bioc-xvector (0.38.0-1) ...
Setting up dh-r (20230121) ...
Setting up r-cran-rsqlite (2.2.20-1) ...
Setting up r-bioc-genomicranges (1.50.2+dfsg-1) ...
Setting up r-bioc-biostrings (2.66.0-1) ...
Setting up r-bioc-rsamtools (2.14.0-1) ...
Setting up r-bioc-summarizedexperiment (1.28.0+dfsg-1) ...
Setting up r-bioc-keggrest (1.38.0+dfsg-1) ...
Setting up r-bioc-annotationdbi (1.60.0-1) ...
Setting up r-bioc-annotate (1.76.0+dfsg-1) ...
Setting up r-bioc-genefilter (1.80.3-1) ...
Setting up r-bioc-genomicalignments (1.34.0-1) ...
Setting up r-bioc-rtracklayer (1.58.0-1) ...
Setting up r-bioc-sva (3.46.0-1) ...
Processing triggers for libc-bin (2.36-9) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
I: Building the package
I: Running cd /build/r-bioc-ballgown-2.30.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../r-bioc-ballgown_2.30.0+dfsg-1_source.changes
dpkg-buildpackage: info: source package r-bioc-ballgown
dpkg-buildpackage: info: source version 2.30.0+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
 debian/rules clean
dh clean --buildsystem R
   dh_auto_clean -O--buildsystem=R
   dh_autoreconf_clean -O--buildsystem=R
   dh_clean -O--buildsystem=R
 debian/rules binary
dh binary --buildsystem R
   dh_update_autotools_config -O--buildsystem=R
   dh_autoreconf -O--buildsystem=R
   dh_auto_configure -O--buildsystem=R
   dh_auto_build -O--buildsystem=R
   debian/rules execute_after_dh_auto_build
make[1]: Entering directory '/build/r-bioc-ballgown-2.30.0+dfsg'
cd inst/doc && Rscript -e "require(knitr); require(markdown); knit('ballgown.Rmd', 'ballgown.md'); markdownToHTML('ballgown.md', 'ballgown.html', options=c('use_xhtml', 'base64_images'));" && rm -f ballgown.md
Loading required package: knitr
Loading required package: markdown


processing file: ballgown.Rmd

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output file: ballgown.md

[1] "ballgown.md"
make[1]: Leaving directory '/build/r-bioc-ballgown-2.30.0+dfsg'
   dh_auto_test -O--buildsystem=R
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--buildsystem=R
   dh_prep -O--buildsystem=R
   dh_auto_install --destdir=debian/r-bioc-ballgown/ -O--buildsystem=R
I: R packages needed for DEP8: testthat
I: R Package: ballgown Version: 2.30.0
I: Building using R version 4.2.2.20221110-2
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Tue, 22 Nov 2022 07:19:31 +0100
	mkdir -p /build/r-bioc-ballgown-2.30.0\+dfsg/debian/r-bioc-ballgown/usr/lib/R/site-library
	R CMD INSTALL -l /build/r-bioc-ballgown-2.30.0\+dfsg/debian/r-bioc-ballgown/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 22 Nov 2022 07:19:31 +0100'"
* installing *source* package 'ballgown' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'structure' in package 'ballgown'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ballgown)
W: Ignoring specified R dependency: R (>= 3.5.0)
I: Using r-cran-testthat for Recommends:testthat
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-markdown for Suggests:markdown
I: Using r-bioc-genomicranges for Imports:GenomicRanges (>= 1.17.25)
I: Using r-bioc-iranges for Imports:IRanges (>= 1.99.22)
I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.9.39)
I: Using r-cran-rcolorbrewer for Imports:RColorBrewer
I: Using r-bioc-sva for Imports:sva
I: Using r-bioc-limma for Imports:limma
I: Using r-bioc-rtracklayer for Imports:rtracklayer (>= 1.29.25)
I: Using r-bioc-biobase for Imports:Biobase (>= 2.25.0)
I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb
I: BioConductor API version: r-api-bioc-3.16
I: Use r-bioc-ballgown as Debian binary package for variables substitution
   dh_installdocs -O--buildsystem=R
   dh_installchangelogs -O--buildsystem=R
   dh_installsystemduser -O--buildsystem=R
   dh_perl -O--buildsystem=R
   dh_link -O--buildsystem=R
   dh_strip_nondeterminism -O--buildsystem=R
   dh_compress -O--buildsystem=R
   debian/rules override_dh_fixperms
make[1]: Entering directory '/build/r-bioc-ballgown-2.30.0+dfsg'
dh_fixperms
find debian -type f \( -name '*.ctab' -o -name '*.Rmd' -o -name '*.gz' \) | xargs chmod -x
make[1]: Leaving directory '/build/r-bioc-ballgown-2.30.0+dfsg'
   dh_missing -O--buildsystem=R
   dh_installdeb -O--buildsystem=R
   dh_gencontrol -O--buildsystem=R
   dh_md5sums -O--buildsystem=R
   dh_builddeb -O--buildsystem=R
dpkg-deb: building package 'r-bioc-ballgown' in '../r-bioc-ballgown_2.30.0+dfsg-1_all.deb'.
 dpkg-genbuildinfo --build=binary -O../r-bioc-ballgown_2.30.0+dfsg-1_amd64.buildinfo
 dpkg-genchanges --build=binary -O../r-bioc-ballgown_2.30.0+dfsg-1_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/584897 and its subdirectories
I: Current time: Fri Jun 21 21:45:28 -12 2024
I: pbuilder-time-stamp: 1719049528