I: pbuilder: network access will be disabled during build I: Current time: Fri Jun 14 03:40:46 -12 2024 I: pbuilder-time-stamp: 1718379646 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [seqan-needle_1.0.1.0.0.git.3011926+ds-4.dsc] I: copying [./seqan-needle_1.0.1.0.0.git.3011926+ds.orig.tar.xz] I: copying [./seqan-needle_1.0.1.0.0.git.3011926+ds-4.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Nov 23 22:43:29 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./seqan-needle_1.0.1.0.0.git.3011926+ds-4.dsc: no acceptable signature found dpkg-source: info: extracting seqan-needle in seqan-needle-1.0.1.0.0.git.3011926+ds dpkg-source: info: unpacking seqan-needle_1.0.1.0.0.git.3011926+ds.orig.tar.xz dpkg-source: info: unpacking seqan-needle_1.0.1.0.0.git.3011926+ds-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling.patch dpkg-source: info: applying privacy dpkg-source: info: applying debian_seqan3 dpkg-source: info: applying create_doc_without_previous_binary_build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2822293/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='14609899eced4b9a965516c03cb17808' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2822293' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.maExnrEU/pbuilderrc_lxWe --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.maExnrEU/b1 --logfile b1/build.log seqan-needle_1.0.1.0.0.git.3011926+ds-4.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos5-amd64 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 2023 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 2023 more -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 2023 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/2822293/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libseqan3-dev (>= 3.2.0+ds-5), libgtest-dev, libcereal-dev, pkg-config, doxygen dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libseqan3-dev (>= 3.2.0+ds-5); however: Package libseqan3-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcereal-dev{a} libclang-cpp14{a} libclang1-14{a} libcurl4{a} libdebhelper-perl{a} libedit2{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgtest-dev{a} libicu72{a} libjsoncpp25{a} libldap-2.5-0{a} libllvm14{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan3-dev{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} libz3-4{a} m4{a} man-db{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 66 newly installed, 0 to remove and 0 not upgraded. Need to get 86.3 MB of archives. After unpacking 378 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libproc2-0 amd64 2:4.0.2-3 [62.8 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 procps amd64 2:4.0.2-3 [709 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libarchive13 amd64 3.6.2-1 [343 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-9 [386 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libjsoncpp25 amd64 1.9.5-4 [78.6 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 librhash0 amd64 1.4.3-3 [134 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 libuv1 amd64 1.44.2-1 [140 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 cmake-data all 3.25.1-1 [2026 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 cmake amd64 3.25.1-1 [8692 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 41 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 43 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libz3-4 amd64 4.8.12-3.1 [7216 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libllvm14 amd64 1:14.0.6-12 [21.8 MB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 libclang-cpp14 amd64 1:14.0.6-12 [11.1 MB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libclang1-14 amd64 1:14.0.6-12 [6157 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 doxygen amd64 1.9.4-4 [4611 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 googletest all 1.12.1-0.2 [506 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 libbz2-dev amd64 1.0.8-5+b1 [30.9 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 rapidjson-dev all 1.1.0+dfsg2-7.1 [97.7 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 libcereal-dev amd64 1.3.2+dfsg-4 [221 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 libgtest-dev amd64 1.12.1-0.2 [240 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libpkgconf3 amd64 1.8.1-1 [36.1 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 libseqan3-dev all 3.2.0+ds-6 [752 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 pkgconf amd64 1.8.1-1 [25.9 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 pkg-config amd64 1.8.1-1 [13.7 kB] Fetched 86.3 MB in 5s (18.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.2-3_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.2-3_amd64.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../04-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../07-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.22.4-10_amd64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.38.1-5+b1_amd64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../10-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.11.2-2_amd64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../17-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../18-libxml2_2.9.14+dfsg-1.2_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.2) ... Selecting previously unselected package libarchive13:amd64. Preparing to unpack .../19-libarchive13_3.6.2-1_amd64.deb ... Unpacking libarchive13:amd64 (3.6.2-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../20-libbrotli1_1.0.9-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b6) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../21-libsasl2-modules-db_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../22-libsasl2-2_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../23-libldap-2.5-0_2.5.13+dfsg-5_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../24-libnghttp2-14_1.52.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.52.0-1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../25-libpsl5_0.21.2-1_amd64.deb ... Unpacking libpsl5:amd64 (0.21.2-1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../26-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../27-libssh2-1_1.10.0-3+b1_amd64.deb ... Unpacking libssh2-1:amd64 (1.10.0-3+b1) ... Selecting previously unselected package libcurl4:amd64. Preparing to unpack .../28-libcurl4_7.88.1-9_amd64.deb ... Unpacking libcurl4:amd64 (7.88.1-9) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../29-libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package libjsoncpp25:amd64. Preparing to unpack .../30-libjsoncpp25_1.9.5-4_amd64.deb ... Unpacking libjsoncpp25:amd64 (1.9.5-4) ... Selecting previously unselected package librhash0:amd64. Preparing to unpack .../31-librhash0_1.4.3-3_amd64.deb ... Unpacking librhash0:amd64 (1.4.3-3) ... Selecting previously unselected package libuv1:amd64. Preparing to unpack .../32-libuv1_1.44.2-1_amd64.deb ... Unpacking libuv1:amd64 (1.44.2-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../33-cmake-data_3.25.1-1_all.deb ... Unpacking cmake-data (3.25.1-1) ... Selecting previously unselected package cmake. Preparing to unpack .../34-cmake_3.25.1-1_amd64.deb ... Unpacking cmake (3.25.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../35-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../36-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../37-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../38-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../39-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../40-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../41-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../42-libelf1_0.188-2.1_amd64.deb ... Unpacking libelf1:amd64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../43-dwz_0.15-1_amd64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package gettext. Preparing to unpack .../44-gettext_0.21-12_amd64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../45-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../46-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../47-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../48-libbsd0_0.11.7-2_amd64.deb ... Unpacking libbsd0:amd64 (0.11.7-2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../49-libedit2_3.1-20221030-2_amd64.deb ... Unpacking libedit2:amd64 (3.1-20221030-2) ... Selecting previously unselected package libz3-4:amd64. Preparing to unpack .../50-libz3-4_4.8.12-3.1_amd64.deb ... Unpacking libz3-4:amd64 (4.8.12-3.1) ... Selecting previously unselected package libllvm14:amd64. Preparing to unpack .../51-libllvm14_1%3a14.0.6-12_amd64.deb ... Unpacking libllvm14:amd64 (1:14.0.6-12) ... Selecting previously unselected package libclang-cpp14. Preparing to unpack .../52-libclang-cpp14_1%3a14.0.6-12_amd64.deb ... Unpacking libclang-cpp14 (1:14.0.6-12) ... Selecting previously unselected package libclang1-14. Preparing to unpack .../53-libclang1-14_1%3a14.0.6-12_amd64.deb ... Unpacking libclang1-14 (1:14.0.6-12) ... Selecting previously unselected package doxygen. Preparing to unpack .../54-doxygen_1.9.4-4_amd64.deb ... Unpacking doxygen (1.9.4-4) ... Selecting previously unselected package googletest. Preparing to unpack .../55-googletest_1.12.1-0.2_all.deb ... Unpacking googletest (1.12.1-0.2) ... Selecting previously unselected package libbz2-dev:amd64. Preparing to unpack .../56-libbz2-dev_1.0.8-5+b1_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.8-5+b1) ... Selecting previously unselected package rapidjson-dev. Preparing to unpack .../57-rapidjson-dev_1.1.0+dfsg2-7.1_all.deb ... Unpacking rapidjson-dev (1.1.0+dfsg2-7.1) ... Selecting previously unselected package libcereal-dev. Preparing to unpack .../58-libcereal-dev_1.3.2+dfsg-4_amd64.deb ... Unpacking libcereal-dev (1.3.2+dfsg-4) ... Selecting previously unselected package libgtest-dev:amd64. Preparing to unpack .../59-libgtest-dev_1.12.1-0.2_amd64.deb ... Unpacking libgtest-dev:amd64 (1.12.1-0.2) ... Selecting previously unselected package libpkgconf3:amd64. Preparing to unpack .../60-libpkgconf3_1.8.1-1_amd64.deb ... Unpacking libpkgconf3:amd64 (1.8.1-1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../61-zlib1g-dev_1%3a1.2.13.dfsg-1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Selecting previously unselected package libseqan3-dev. Preparing to unpack .../62-libseqan3-dev_3.2.0+ds-6_all.deb ... Unpacking libseqan3-dev (3.2.0+ds-6) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../63-pkgconf-bin_1.8.1-1_amd64.deb ... Unpacking pkgconf-bin (1.8.1-1) ... Selecting previously unselected package pkgconf:amd64. Preparing to unpack .../64-pkgconf_1.8.1-1_amd64.deb ... Unpacking pkgconf:amd64 (1.8.1-1) ... Selecting previously unselected package pkg-config:amd64. Preparing to unpack .../65-pkg-config_1.8.1-1_amd64.deb ... Unpacking pkg-config:amd64 (1.8.1-1) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up libpipeline1:amd64 (1.5.7-1) ... Setting up libpsl5:amd64 (0.21.2-1) ... Setting up libicu72:amd64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up libnghttp2-14:amd64 (1.52.0-1) ... Setting up libmagic1:amd64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up googletest (1.12.1-0.2) ... Setting up rapidjson-dev (1.1.0+dfsg2-7.1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:amd64 (4.8.12-3.1) ... Setting up libpkgconf3:amd64 (1.8.1-1) ... Setting up libuv1:amd64 (1.44.2-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libproc2-0:amd64 (2:4.0.2-3) ... Setting up autopoint (0.21-12) ... Setting up libjsoncpp25:amd64 (1.9.5-4) ... Setting up pkgconf-bin (1.8.1-1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-10) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up librhash0:amd64 (1.4.3-3) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up procps (2:4.0.2-3) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up cmake-data (3.25.1-1) ... Setting up libbsd0:amd64 (0.11.7-2) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.2) ... Setting up libbz2-dev:amd64 (1.0.8-5+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libgtest-dev:amd64 (1.12.1-0.2) ... Setting up libtool (2.4.7-5) ... Setting up libarchive13:amd64 (3.6.2-1) ... Setting up libedit2:amd64 (3.1-20221030-2) ... Setting up libcereal-dev (1.3.2+dfsg-4) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up pkgconf:amd64 (1.8.1-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up pkg-config:amd64 (1.8.1-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libllvm14:amd64 (1:14.0.6-12) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libcurl4:amd64 (7.88.1-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libseqan3-dev (3.2.0+ds-6) ... Setting up libclang1-14 (1:14.0.6-12) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libclang-cpp14 (1:14.0.6-12) ... Setting up cmake (3.25.1-1) ... Setting up debhelper (13.11.4) ... Setting up doxygen (1.9.4-4) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqan-needle_1.0.1.0.0.git.3011926+ds-4_source.changes dpkg-buildpackage: info: source package seqan-needle dpkg-buildpackage: info: source version 1.0.1.0.0.git.3011926+ds-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds' rm -Rf lib/seqan3 dh_auto_configure -- -DSEQAN3_NO_LEMON=OFF cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DSEQAN3_NO_LEMON=OFF .. -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- You can run `make` to build the application. -- Found Doxygen: /usr/bin/doxygen -- You can run `make doc` to build api documentation. -- You can run `make test` to build and run tests. -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds' dh_auto_build --arch cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/seqan-needle-1.0.1.0.0.git.3011926+ds -B/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/CMakeFiles /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' make -f src/CMakeFiles/needle_lib.dir/build.make src/CMakeFiles/needle_lib.dir/depend make[4]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-needle-1.0.1.0.0.git.3011926+ds /build/seqan-needle-1.0.1.0.0.git.3011926+ds/src /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/src /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/src/CMakeFiles/needle_lib.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' make -f src/CMakeFiles/needle_lib.dir/build.make src/CMakeFiles/needle_lib.dir/build make[4]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 20%] Building CXX object src/CMakeFiles/needle_lib.dir/ibf.cpp.o cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/../include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/seqan-needle-1.0.1.0.0.git.3011926+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT src/CMakeFiles/needle_lib.dir/ibf.cpp.o -MF CMakeFiles/needle_lib.dir/ibf.cpp.o.d -o CMakeFiles/needle_lib.dir/ibf.cpp.o -c /build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/ibf.cpp [ 40%] Building CXX object src/CMakeFiles/needle_lib.dir/estimate.cpp.o cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/../include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/seqan-needle-1.0.1.0.0.git.3011926+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT src/CMakeFiles/needle_lib.dir/estimate.cpp.o -MF CMakeFiles/needle_lib.dir/estimate.cpp.o.d -o CMakeFiles/needle_lib.dir/estimate.cpp.o -c /build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/estimate.cpp [ 60%] Linking CXX static library ../lib/libneedle_lib.a cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/needle_lib.dir/cmake_clean_target.cmake cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/needle_lib.dir/link.txt --verbose=1 /usr/bin/ar qc ../lib/libneedle_lib.a CMakeFiles/needle_lib.dir/ibf.cpp.o CMakeFiles/needle_lib.dir/estimate.cpp.o /usr/bin/ranlib ../lib/libneedle_lib.a make[4]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 60%] Built target needle_lib make -f src/CMakeFiles/needle.dir/build.make src/CMakeFiles/needle.dir/depend make[4]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-needle-1.0.1.0.0.git.3011926+ds /build/seqan-needle-1.0.1.0.0.git.3011926+ds/src /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/src /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/src/CMakeFiles/needle.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' make -f src/CMakeFiles/needle.dir/build.make src/CMakeFiles/needle.dir/build make[4]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 80%] Building CXX object src/CMakeFiles/needle.dir/main.cpp.o cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/../include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/seqan-needle-1.0.1.0.0.git.3011926+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT src/CMakeFiles/needle.dir/main.cpp.o -MF CMakeFiles/needle.dir/main.cpp.o.d -o CMakeFiles/needle.dir/main.cpp.o -c /build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/main.cpp [100%] Linking CXX executable ../bin/needle cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/needle.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-needle-1.0.1.0.0.git.3011926+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/needle.dir/main.cpp.o -o ../bin/needle ../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/12/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [100%] Built target needle make[3]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' obj-*/bin/needle --export-help man > debian/needle.1 obj-*/bin/needle count --export-help man > debian/needle-count.1 obj-*/bin/needle estimate --export-help man > debian/needle-estimate.1 obj-*/bin/needle ibf --export-help man > debian/needle-ibf.1 obj-*/bin/needle minimiser --export-help man > debian/needle-minimiser.1 make[1]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds' doxygen doc/doxygen_cfg warning: tag INCLUDE_PATH: include path '${CMAKE_SOURCE_DIR}/include' does not exist warning: source '${CMAKE_SOURCE_DIR}/include' is not a readable file or directory... skipping. Doxygen version used: 1.9.4 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/seqan-needle-1.0.1.0.0.git.3011926+ds/include Searching for files in directory /build/seqan-needle-1.0.1.0.0.git.3011926+ds/src Reading and parsing tag files Parsing files Preprocessing /build/seqan-needle-1.0.1.0.0.git.3011926+ds/include/estimate.h... Parsing file /build/seqan-needle-1.0.1.0.0.git.3011926+ds/include/estimate.h... Preprocessing /build/seqan-needle-1.0.1.0.0.git.3011926+ds/include/ibf.h... Parsing file /build/seqan-needle-1.0.1.0.0.git.3011926+ds/include/ibf.h... Preprocessing /build/seqan-needle-1.0.1.0.0.git.3011926+ds/include/shared.h... Parsing file /build/seqan-needle-1.0.1.0.0.git.3011926+ds/include/shared.h... Preprocessing /build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/CMakeLists.txt... Parsing file /build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/CMakeLists.txt... Preprocessing /build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/estimate.cpp... Parsing file /build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/estimate.cpp... Preprocessing /build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/ibf.cpp... Parsing file /build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/ibf.cpp... Preprocessing /build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/main.cpp... Parsing file /build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/main.cpp... Reading /build/seqan-needle-1.0.1.0.0.git.3011926+ds/LICENSE.md... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file /build/seqan-needle-1.0.1.0.0.git.3011926+ds/include/estimate.h... Generating code for file /build/seqan-needle-1.0.1.0.0.git.3011926+ds/include/ibf.h... Generating code for file /build/seqan-needle-1.0.1.0.0.git.3011926+ds/include/shared.h... Generating file documentation... Generating docs for file /build/seqan-needle-1.0.1.0.0.git.3011926+ds/include/estimate.h... Generating docs for file /build/seqan-needle-1.0.1.0.0.git.3011926+ds/include/ibf.h... Generating docs for file /build/seqan-needle-1.0.1.0.0.git.3011926+ds/include/shared.h... Generating docs for file /build/seqan-needle-1.0.1.0.0.git.3011926+ds/LICENSE.md... Generating docs for file /build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/CMakeLists.txt... Generating docs for file /build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/estimate.cpp... Generating docs for file /build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/ibf.cpp... Generating docs for file /build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/main.cpp... Generating page documentation... Generating docs for page md__build_seqan_needle_1_0_1_0_0_git_3011926_ds_LICENSE... Generating group documentation... Generating class documentation... Generating docs for compound all_arguments... Generating docs for compound estimate_arguments... Generating docs for compound estimate_ibf_arguments... Generating docs for compound min_arguments... Generating docs for compound minimiser_arguments... Generating docs for compound my_traits... Generating docs for compound RandomGenerator... Generating concept documentation... Generating namespace index... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... lookup cache used 116/65536 hits=249 misses=123 finished... make[1]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds' debian/rules override_dh_auto_test-indep make[1]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds' echo "Do Nothing" Do Nothing make[1]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds' dh_auto_test -Nseqan-needle-doc cd obj-x86_64-linux-gnu && make -j16 test ARGS\+=--verbose ARGS\+=-j16 make[1]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j16 UpdateCTestConfiguration from :/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu Constructing a list of tests gmake[2]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu && /usr/bin/gmake -f CMakeFiles/Makefile2 test/CMakeFiles/api_test.dir/rule gmake[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. gmake[3]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/seqan-needle-1.0.1.0.0.git.3011926+ds -B/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/CMakeFiles 13 /usr/bin/gmake -f CMakeFiles/Makefile2 test/CMakeFiles/api_test.dir/all gmake[4]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/CMakeFiles/needle_lib.dir/build.make src/CMakeFiles/needle_lib.dir/depend gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-needle-1.0.1.0.0.git.3011926+ds /build/seqan-needle-1.0.1.0.0.git.3011926+ds/src /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/src /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/src/CMakeFiles/needle_lib.dir/DependInfo.cmake --color= Dependencies file "src/CMakeFiles/needle_lib.dir/estimate.cpp.o.d" is newer than depends file "/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/src/CMakeFiles/needle_lib.dir/compiler_depend.internal". Dependencies file "src/CMakeFiles/needle_lib.dir/ibf.cpp.o.d" is newer than depends file "/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/src/CMakeFiles/needle_lib.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target needle_lib gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/CMakeFiles/needle_lib.dir/build.make src/CMakeFiles/needle_lib.dir/build gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/CMakeFiles/needle_lib.dir/build'. gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 23%] Built target needle_lib /usr/bin/gmake -f test/api/CMakeFiles/minimiser_test.dir/build.make test/api/CMakeFiles/minimiser_test.dir/depend gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-needle-1.0.1.0.0.git.3011926+ds /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/api /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/api /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/minimiser_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/api/CMakeFiles/minimiser_test.dir/build.make test/api/CMakeFiles/minimiser_test.dir/build gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 30%] Building CXX object test/api/CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DBINDIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/data/\" -DDATA_INPUT_DIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/data/\" -DOUTPUTDIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/api/SEQAN3_CLONE_DIR-NOTFOUND/test/include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/../include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/seqan-needle-1.0.1.0.0.git.3011926+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT test/api/CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o -MF CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o.d -o CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o -c /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/api/minimiser_test.cpp [ 38%] Linking CXX executable minimiser_test cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/minimiser_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-needle-1.0.1.0.0.git.3011926+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o -o minimiser_test ../../lib/libneedle_lib.a -lgtest -lgtest_main /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/12/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 38%] Built target minimiser_test /usr/bin/gmake -f test/api/CMakeFiles/count_test.dir/build.make test/api/CMakeFiles/count_test.dir/depend gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-needle-1.0.1.0.0.git.3011926+ds /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/api /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/api /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/count_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/api/CMakeFiles/count_test.dir/build.make test/api/CMakeFiles/count_test.dir/build gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 46%] Building CXX object test/api/CMakeFiles/count_test.dir/count_test.cpp.o cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DBINDIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/data/\" -DDATA_INPUT_DIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/data/\" -DOUTPUTDIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/api/SEQAN3_CLONE_DIR-NOTFOUND/test/include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/../include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/seqan-needle-1.0.1.0.0.git.3011926+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT test/api/CMakeFiles/count_test.dir/count_test.cpp.o -MF CMakeFiles/count_test.dir/count_test.cpp.o.d -o CMakeFiles/count_test.dir/count_test.cpp.o -c /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/api/count_test.cpp [ 53%] Linking CXX executable count_test cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/count_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-needle-1.0.1.0.0.git.3011926+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/count_test.dir/count_test.cpp.o -o count_test ../../lib/libneedle_lib.a -lgtest -lgtest_main /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/12/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 53%] Built target count_test /usr/bin/gmake -f test/api/CMakeFiles/estimate_test.dir/build.make test/api/CMakeFiles/estimate_test.dir/depend gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-needle-1.0.1.0.0.git.3011926+ds /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/api /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/api /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/estimate_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/api/CMakeFiles/estimate_test.dir/build.make test/api/CMakeFiles/estimate_test.dir/build gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 61%] Building CXX object test/api/CMakeFiles/estimate_test.dir/estimate_test.cpp.o cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DBINDIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/data/\" -DDATA_INPUT_DIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/data/\" -DOUTPUTDIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/api/SEQAN3_CLONE_DIR-NOTFOUND/test/include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/../include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/seqan-needle-1.0.1.0.0.git.3011926+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT test/api/CMakeFiles/estimate_test.dir/estimate_test.cpp.o -MF CMakeFiles/estimate_test.dir/estimate_test.cpp.o.d -o CMakeFiles/estimate_test.dir/estimate_test.cpp.o -c /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/api/estimate_test.cpp [ 69%] Linking CXX executable estimate_test cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/estimate_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-needle-1.0.1.0.0.git.3011926+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/estimate_test.dir/estimate_test.cpp.o -o estimate_test ../../lib/libneedle_lib.a -lgtest -lgtest_main /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/12/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 69%] Built target estimate_test /usr/bin/gmake -f test/api/CMakeFiles/ibf_test.dir/build.make test/api/CMakeFiles/ibf_test.dir/depend gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-needle-1.0.1.0.0.git.3011926+ds /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/api /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/api /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/ibf_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/api/CMakeFiles/ibf_test.dir/build.make test/api/CMakeFiles/ibf_test.dir/build gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 76%] Building CXX object test/api/CMakeFiles/ibf_test.dir/ibf_test.cpp.o cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DBINDIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/data/\" -DDATA_INPUT_DIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/data/\" -DOUTPUTDIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/api/SEQAN3_CLONE_DIR-NOTFOUND/test/include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/../include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/seqan-needle-1.0.1.0.0.git.3011926+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT test/api/CMakeFiles/ibf_test.dir/ibf_test.cpp.o -MF CMakeFiles/ibf_test.dir/ibf_test.cpp.o.d -o CMakeFiles/ibf_test.dir/ibf_test.cpp.o -c /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/api/ibf_test.cpp [ 84%] Linking CXX executable ibf_test cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/ibf_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-needle-1.0.1.0.0.git.3011926+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/ibf_test.dir/ibf_test.cpp.o -o ibf_test ../../lib/libneedle_lib.a -lgtest -lgtest_main /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/12/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 84%] Built target ibf_test /usr/bin/gmake -f test/api/CMakeFiles/ibfmin_test.dir/build.make test/api/CMakeFiles/ibfmin_test.dir/depend gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-needle-1.0.1.0.0.git.3011926+ds /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/api /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/api /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/ibfmin_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/api/CMakeFiles/ibfmin_test.dir/build.make test/api/CMakeFiles/ibfmin_test.dir/build gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 92%] Building CXX object test/api/CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DBINDIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/data/\" -DDATA_INPUT_DIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/data/\" -DOUTPUTDIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/api/SEQAN3_CLONE_DIR-NOTFOUND/test/include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/../include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/seqan-needle-1.0.1.0.0.git.3011926+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT test/api/CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -MF CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o.d -o CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -c /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/api/ibfmin_test.cpp [100%] Linking CXX executable ibfmin_test cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/ibfmin_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-needle-1.0.1.0.0.git.3011926+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -o ibfmin_test ../../lib/libneedle_lib.a -lgtest -lgtest_main /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/12/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [100%] Built target ibfmin_test /usr/bin/gmake -f test/CMakeFiles/api_test.dir/build.make test/CMakeFiles/api_test.dir/depend gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-needle-1.0.1.0.0.git.3011926+ds /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/CMakeFiles/api_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/api_test.dir/build.make test/CMakeFiles/api_test.dir/build gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'test/CMakeFiles/api_test.dir/build'. gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [100%] Built target api_test gmake[4]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/CMakeFiles 0 gmake[3]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' gmake[2]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test' gmake[2]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu && /usr/bin/gmake -f CMakeFiles/Makefile2 test/CMakeFiles/cli_test.dir/rule gmake[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. gmake[3]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/seqan-needle-1.0.1.0.0.git.3011926+ds -B/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/CMakeFiles 60 /usr/bin/gmake -f CMakeFiles/Makefile2 test/CMakeFiles/cli_test.dir/all gmake[4]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/datasource--mini_gen.fasta.dir/build.make test/CMakeFiles/datasource--mini_gen.fasta.dir/depend gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-needle-1.0.1.0.0.git.3011926+ds /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/CMakeFiles/datasource--mini_gen.fasta.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/datasource--mini_gen.fasta.dir/build.make test/CMakeFiles/datasource--mini_gen.fasta.dir/build gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 1%] Creating directories for 'datasource--mini_gen.fasta' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -Dcfgdir= -P /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/tmp/datasource--mini_gen.fasta-mkdirs.cmake cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-stamp/datasource--mini_gen.fasta-mkdir [ 3%] Performing download step (verify) for 'datasource--mini_gen.fasta' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src && /usr/bin/cmake -P /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-stamp/verify-datasource--mini_gen.fasta.cmake -- verifying file... file='/build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/data/mini_gen.fasta' -- verifying file... done cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-stamp/datasource--mini_gen.fasta-download [ 5%] No update step for 'datasource--mini_gen.fasta' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E echo_append cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-stamp/datasource--mini_gen.fasta-update [ 6%] No patch step for 'datasource--mini_gen.fasta' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E echo_append cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-stamp/datasource--mini_gen.fasta-patch [ 8%] No configure step for 'datasource--mini_gen.fasta' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-build && /usr/bin/cmake -E echo_append cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-build && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-stamp/datasource--mini_gen.fasta-configure [ 10%] No build step for 'datasource--mini_gen.fasta' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-build && /usr/bin/cmake -E echo_append cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-build && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-stamp/datasource--mini_gen.fasta-build [ 11%] Performing install step for 'datasource--mini_gen.fasta' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-build && /usr/bin/cmake -E create_symlink /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/data/mini_gen.fasta /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/data/mini_gen.fasta cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-build && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-stamp/datasource--mini_gen.fasta-install [ 13%] No test step for 'datasource--mini_gen.fasta' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-build && /usr/bin/cmake -E echo_append cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-build && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-stamp/datasource--mini_gen.fasta-test [ 15%] Completed 'datasource--mini_gen.fasta' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E make_directory /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/CMakeFiles cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/CMakeFiles/datasource--mini_gen.fasta-complete cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_gen.fasta-stamp/datasource--mini_gen.fasta-done gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 15%] Built target datasource--mini_gen.fasta /usr/bin/gmake -f src/CMakeFiles/needle_lib.dir/build.make src/CMakeFiles/needle_lib.dir/depend gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-needle-1.0.1.0.0.git.3011926+ds /build/seqan-needle-1.0.1.0.0.git.3011926+ds/src /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/src /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/src/CMakeFiles/needle_lib.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/CMakeFiles/needle_lib.dir/build.make src/CMakeFiles/needle_lib.dir/build gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/CMakeFiles/needle_lib.dir/build'. gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 20%] Built target needle_lib /usr/bin/gmake -f src/CMakeFiles/needle.dir/build.make src/CMakeFiles/needle.dir/depend gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-needle-1.0.1.0.0.git.3011926+ds /build/seqan-needle-1.0.1.0.0.git.3011926+ds/src /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/src /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/src/CMakeFiles/needle.dir/DependInfo.cmake --color= Dependencies file "src/CMakeFiles/needle.dir/main.cpp.o.d" is newer than depends file "/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/src/CMakeFiles/needle.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target needle gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/CMakeFiles/needle.dir/build.make src/CMakeFiles/needle.dir/build gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/CMakeFiles/needle.dir/build'. gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 23%] Built target needle /usr/bin/gmake -f test/CMakeFiles/datasource--mini_example.fasta.dir/build.make test/CMakeFiles/datasource--mini_example.fasta.dir/depend gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-needle-1.0.1.0.0.git.3011926+ds /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/CMakeFiles/datasource--mini_example.fasta.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/datasource--mini_example.fasta.dir/build.make test/CMakeFiles/datasource--mini_example.fasta.dir/build gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 25%] Creating directories for 'datasource--mini_example.fasta' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -Dcfgdir= -P /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/tmp/datasource--mini_example.fasta-mkdirs.cmake cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-stamp/datasource--mini_example.fasta-mkdir [ 26%] Performing download step (verify) for 'datasource--mini_example.fasta' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src && /usr/bin/cmake -P /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-stamp/verify-datasource--mini_example.fasta.cmake -- verifying file... file='/build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/data/mini_example.fasta' -- verifying file... done cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-stamp/datasource--mini_example.fasta-download [ 28%] No update step for 'datasource--mini_example.fasta' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E echo_append cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-stamp/datasource--mini_example.fasta-update [ 30%] No patch step for 'datasource--mini_example.fasta' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E echo_append cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-stamp/datasource--mini_example.fasta-patch [ 31%] No configure step for 'datasource--mini_example.fasta' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-build && /usr/bin/cmake -E echo_append cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-build && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-stamp/datasource--mini_example.fasta-configure [ 33%] No build step for 'datasource--mini_example.fasta' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-build && /usr/bin/cmake -E echo_append cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-build && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-stamp/datasource--mini_example.fasta-build [ 35%] Performing install step for 'datasource--mini_example.fasta' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-build && /usr/bin/cmake -E create_symlink /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/data/mini_example.fasta /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/data/mini_example.fasta cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-build && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-stamp/datasource--mini_example.fasta-install [ 36%] No test step for 'datasource--mini_example.fasta' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-build && /usr/bin/cmake -E echo_append cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-build && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-stamp/datasource--mini_example.fasta-test [ 38%] Completed 'datasource--mini_example.fasta' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E make_directory /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/CMakeFiles cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/CMakeFiles/datasource--mini_example.fasta-complete cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.fasta-stamp/datasource--mini_example.fasta-done gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 38%] Built target datasource--mini_example.fasta /usr/bin/gmake -f test/cli/CMakeFiles/count_options_test.dir/build.make test/cli/CMakeFiles/count_options_test.dir/depend gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-needle-1.0.1.0.0.git.3011926+ds /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/cli /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/cli /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/count_options_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/CMakeFiles/count_options_test.dir/build.make test/cli/CMakeFiles/count_options_test.dir/build gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 40%] Building CXX object test/cli/CMakeFiles/count_options_test.dir/count_options_test.cpp.o cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DBINDIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/data/\" -DDATA_INPUT_DIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/data/\" -DOUTPUTDIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/cli/SEQAN3_CLONE_DIR-NOTFOUND/test/include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/../include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/seqan-needle-1.0.1.0.0.git.3011926+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT test/cli/CMakeFiles/count_options_test.dir/count_options_test.cpp.o -MF CMakeFiles/count_options_test.dir/count_options_test.cpp.o.d -o CMakeFiles/count_options_test.dir/count_options_test.cpp.o -c /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/cli/count_options_test.cpp [ 41%] Linking CXX executable count_options_test cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/count_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-needle-1.0.1.0.0.git.3011926+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/count_options_test.dir/count_options_test.cpp.o -o count_options_test ../../lib/libneedle_lib.a -lgtest -lgtest_main /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/12/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 41%] Built target count_options_test /usr/bin/gmake -f test/cli/CMakeFiles/needle_options_test.dir/build.make test/cli/CMakeFiles/needle_options_test.dir/depend gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-needle-1.0.1.0.0.git.3011926+ds /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/cli /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/cli /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/needle_options_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/CMakeFiles/needle_options_test.dir/build.make test/cli/CMakeFiles/needle_options_test.dir/build gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 43%] Building CXX object test/cli/CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DBINDIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/data/\" -DDATA_INPUT_DIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/data/\" -DOUTPUTDIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/cli/SEQAN3_CLONE_DIR-NOTFOUND/test/include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/../include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/seqan-needle-1.0.1.0.0.git.3011926+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT test/cli/CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o -MF CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o.d -o CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o -c /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/cli/needle_options_test.cpp [ 45%] Linking CXX executable needle_options_test cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/needle_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-needle-1.0.1.0.0.git.3011926+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o -o needle_options_test ../../lib/libneedle_lib.a -lgtest -lgtest_main /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/12/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 45%] Built target needle_options_test /usr/bin/gmake -f test/CMakeFiles/datasource--mini_example.minimiser.dir/build.make test/CMakeFiles/datasource--mini_example.minimiser.dir/depend gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-needle-1.0.1.0.0.git.3011926+ds /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/CMakeFiles/datasource--mini_example.minimiser.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/datasource--mini_example.minimiser.dir/build.make test/CMakeFiles/datasource--mini_example.minimiser.dir/build gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 46%] Creating directories for 'datasource--mini_example.minimiser' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -Dcfgdir= -P /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/tmp/datasource--mini_example.minimiser-mkdirs.cmake cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-stamp/datasource--mini_example.minimiser-mkdir [ 48%] Performing download step (verify) for 'datasource--mini_example.minimiser' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src && /usr/bin/cmake -P /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-stamp/verify-datasource--mini_example.minimiser.cmake -- verifying file... file='/build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/data/mini_example.minimiser' -- verifying file... done cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-stamp/datasource--mini_example.minimiser-download [ 50%] No update step for 'datasource--mini_example.minimiser' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E echo_append cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-stamp/datasource--mini_example.minimiser-update [ 51%] No patch step for 'datasource--mini_example.minimiser' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E echo_append cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-stamp/datasource--mini_example.minimiser-patch [ 53%] No configure step for 'datasource--mini_example.minimiser' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-build && /usr/bin/cmake -E echo_append cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-build && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-stamp/datasource--mini_example.minimiser-configure [ 55%] No build step for 'datasource--mini_example.minimiser' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-build && /usr/bin/cmake -E echo_append cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-build && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-stamp/datasource--mini_example.minimiser-build [ 56%] Performing install step for 'datasource--mini_example.minimiser' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-build && /usr/bin/cmake -E create_symlink /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/data/mini_example.minimiser /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/data/mini_example.minimiser cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-build && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-stamp/datasource--mini_example.minimiser-install [ 58%] No test step for 'datasource--mini_example.minimiser' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-build && /usr/bin/cmake -E echo_append cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-build && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-stamp/datasource--mini_example.minimiser-test [ 60%] Completed 'datasource--mini_example.minimiser' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E make_directory /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/CMakeFiles cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/CMakeFiles/datasource--mini_example.minimiser-complete cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--mini_example.minimiser-stamp/datasource--mini_example.minimiser-done gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 60%] Built target datasource--mini_example.minimiser /usr/bin/gmake -f test/CMakeFiles/datasource--exp_01.fasta.dir/build.make test/CMakeFiles/datasource--exp_01.fasta.dir/depend gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-needle-1.0.1.0.0.git.3011926+ds /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/CMakeFiles/datasource--exp_01.fasta.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/datasource--exp_01.fasta.dir/build.make test/CMakeFiles/datasource--exp_01.fasta.dir/build gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 61%] Creating directories for 'datasource--exp_01.fasta' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -Dcfgdir= -P /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/tmp/datasource--exp_01.fasta-mkdirs.cmake cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-stamp/datasource--exp_01.fasta-mkdir [ 63%] Performing download step (verify) for 'datasource--exp_01.fasta' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src && /usr/bin/cmake -P /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-stamp/verify-datasource--exp_01.fasta.cmake -- verifying file... file='/build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/data/exp_01.fasta' -- verifying file... done cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-stamp/datasource--exp_01.fasta-download [ 65%] No update step for 'datasource--exp_01.fasta' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E echo_append cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-stamp/datasource--exp_01.fasta-update [ 66%] No patch step for 'datasource--exp_01.fasta' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E echo_append cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-stamp/datasource--exp_01.fasta-patch [ 68%] No configure step for 'datasource--exp_01.fasta' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-build && /usr/bin/cmake -E echo_append cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-build && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-stamp/datasource--exp_01.fasta-configure [ 70%] No build step for 'datasource--exp_01.fasta' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-build && /usr/bin/cmake -E echo_append cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-build && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-stamp/datasource--exp_01.fasta-build [ 71%] Performing install step for 'datasource--exp_01.fasta' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-build && /usr/bin/cmake -E create_symlink /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/data/exp_01.fasta /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/data/exp_01.fasta cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-build && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-stamp/datasource--exp_01.fasta-install [ 73%] No test step for 'datasource--exp_01.fasta' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-build && /usr/bin/cmake -E echo_append cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-build && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-stamp/datasource--exp_01.fasta-test [ 75%] Completed 'datasource--exp_01.fasta' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E make_directory /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/CMakeFiles cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/CMakeFiles/datasource--exp_01.fasta-complete cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--exp_01.fasta-stamp/datasource--exp_01.fasta-done gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 75%] Built target datasource--exp_01.fasta /usr/bin/gmake -f test/cli/CMakeFiles/ibf_options_test.dir/build.make test/cli/CMakeFiles/ibf_options_test.dir/depend gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-needle-1.0.1.0.0.git.3011926+ds /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/cli /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/cli /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/ibf_options_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/CMakeFiles/ibf_options_test.dir/build.make test/cli/CMakeFiles/ibf_options_test.dir/build gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 76%] Building CXX object test/cli/CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DBINDIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/data/\" -DDATA_INPUT_DIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/data/\" -DOUTPUTDIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/cli/SEQAN3_CLONE_DIR-NOTFOUND/test/include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/../include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/seqan-needle-1.0.1.0.0.git.3011926+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT test/cli/CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o -MF CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o.d -o CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o -c /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/cli/ibf_options_test.cpp [ 78%] Linking CXX executable ibf_options_test cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/ibf_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-needle-1.0.1.0.0.git.3011926+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o -o ibf_options_test ../../lib/libneedle_lib.a -lgtest -lgtest_main /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/12/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 78%] Built target ibf_options_test /usr/bin/gmake -f test/cli/CMakeFiles/minimiser_options_test.dir/build.make test/cli/CMakeFiles/minimiser_options_test.dir/depend gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-needle-1.0.1.0.0.git.3011926+ds /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/cli /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/cli /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/minimiser_options_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/CMakeFiles/minimiser_options_test.dir/build.make test/cli/CMakeFiles/minimiser_options_test.dir/build gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 80%] Building CXX object test/cli/CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DBINDIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/data/\" -DDATA_INPUT_DIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/data/\" -DOUTPUTDIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/cli/SEQAN3_CLONE_DIR-NOTFOUND/test/include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/../include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/seqan-needle-1.0.1.0.0.git.3011926+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT test/cli/CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o -MF CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o.d -o CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o -c /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/cli/minimiser_options_test.cpp [ 81%] Linking CXX executable minimiser_options_test cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/minimiser_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-needle-1.0.1.0.0.git.3011926+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o -o minimiser_options_test ../../lib/libneedle_lib.a -lgtest -lgtest_main /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/12/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 81%] Built target minimiser_options_test /usr/bin/gmake -f test/CMakeFiles/datasource--ibf_1.dir/build.make test/CMakeFiles/datasource--ibf_1.dir/depend gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-needle-1.0.1.0.0.git.3011926+ds /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/CMakeFiles/datasource--ibf_1.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/datasource--ibf_1.dir/build.make test/CMakeFiles/datasource--ibf_1.dir/build gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 83%] Creating directories for 'datasource--ibf_1' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -Dcfgdir= -P /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/tmp/datasource--ibf_1-mkdirs.cmake cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-stamp/datasource--ibf_1-mkdir [ 85%] Performing download step (verify) for 'datasource--ibf_1' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src && /usr/bin/cmake -P /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-stamp/verify-datasource--ibf_1.cmake -- verifying file... file='/build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/data/IBF_1' -- verifying file... done cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-stamp/datasource--ibf_1-download [ 86%] No update step for 'datasource--ibf_1' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E echo_append cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-stamp/datasource--ibf_1-update [ 88%] No patch step for 'datasource--ibf_1' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E echo_append cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-stamp/datasource--ibf_1-patch [ 90%] No configure step for 'datasource--ibf_1' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-build && /usr/bin/cmake -E echo_append cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-build && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-stamp/datasource--ibf_1-configure [ 91%] No build step for 'datasource--ibf_1' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-build && /usr/bin/cmake -E echo_append cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-build && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-stamp/datasource--ibf_1-build [ 93%] Performing install step for 'datasource--ibf_1' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-build && /usr/bin/cmake -E create_symlink /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/data/IBF_1 /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/data/IBF_1 cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-build && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-stamp/datasource--ibf_1-install [ 95%] No test step for 'datasource--ibf_1' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-build && /usr/bin/cmake -E echo_append cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-build && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-stamp/datasource--ibf_1-test [ 96%] Completed 'datasource--ibf_1' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E make_directory /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/CMakeFiles cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/CMakeFiles/datasource--ibf_1-complete cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/_datasources/src/datasource--ibf_1-stamp/datasource--ibf_1-done gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 96%] Built target datasource--ibf_1 /usr/bin/gmake -f test/cli/CMakeFiles/estimate_options_test.dir/build.make test/cli/CMakeFiles/estimate_options_test.dir/depend gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-needle-1.0.1.0.0.git.3011926+ds /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/cli /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/cli /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/estimate_options_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/CMakeFiles/estimate_options_test.dir/build.make test/cli/CMakeFiles/estimate_options_test.dir/build gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [ 98%] Building CXX object test/cli/CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DBINDIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/data/\" -DDATA_INPUT_DIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/data/\" -DOUTPUTDIR=\"/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/output/\" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/cli/SEQAN3_CLONE_DIR-NOTFOUND/test/include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/src/../include -I/build/seqan-needle-1.0.1.0.0.git.3011926+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/seqan-needle-1.0.1.0.0.git.3011926+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT test/cli/CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o -MF CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o.d -o CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o -c /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test/cli/estimate_options_test.cpp [100%] Linking CXX executable estimate_options_test cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/estimate_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-needle-1.0.1.0.0.git.3011926+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o -o estimate_options_test ../../lib/libneedle_lib.a -lgtest -lgtest_main /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/gcc/x86_64-linux-gnu/12/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [100%] Built target estimate_options_test /usr/bin/gmake -f test/CMakeFiles/cli_test.dir/build.make test/CMakeFiles/cli_test.dir/depend gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' cd /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-needle-1.0.1.0.0.git.3011926+ds /build/seqan-needle-1.0.1.0.0.git.3011926+ds/test /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/CMakeFiles/cli_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/cli_test.dir/build.make test/CMakeFiles/cli_test.dir/build gmake[5]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'test/CMakeFiles/cli_test.dir/build'. gmake[5]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' [100%] Built target cli_test gmake[4]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/CMakeFiles 0 gmake[3]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' gmake[2]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test' Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: test/api/count_test 1: Test command: /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/api/count_test 1: Working Directory: /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/api 1: Test timeout computed to be: 10000000 test 2 Start 2: test/api/estimate_test 2: Test command: /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/api/estimate_test 2: Working Directory: /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/api 2: Test timeout computed to be: 10000000 test 3 Start 3: test/api/ibf_test 3: Test command: /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/api/ibf_test 3: Working Directory: /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/api 3: Test timeout computed to be: 10000000 test 4 Start 4: test/api/ibfmin_test 4: Test command: /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/api/ibfmin_test 4: Working Directory: /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/api 4: Test timeout computed to be: 10000000 test 5 Start 5: test/api/minimiser_test 5: Test command: /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/api/minimiser_test 5: Working Directory: /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/api 5: Test timeout computed to be: 10000000 test 6 Start 6: test/cli/needle_options_test 6: Test command: /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/cli/needle_options_test 6: Working Directory: /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/cli 6: Test timeout computed to be: 10000000 test 7 Start 7: test/cli/ibf_options_test 7: Test command: /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/cli/ibf_options_test 7: Working Directory: /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/cli 7: Test timeout computed to be: 10000000 test 8 Start 8: test/cli/minimiser_options_test 8: Test command: /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/cli/minimiser_options_test 8: Working Directory: /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/cli 8: Test timeout computed to be: 10000000 test 9 Start 9: test/cli/estimate_options_test 9: Test command: /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/cli/estimate_options_test 9: Working Directory: /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/cli 9: Test timeout computed to be: 10000000 test 10 Start 10: test/cli/count_options_test 10: Test command: /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/cli/count_options_test 10: Working Directory: /build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu/test/cli 10: Test timeout computed to be: 10000000 1: Running main() from ./googletest/src/gtest_main.cc 1: [==========] Running 3 tests from 1 test suite. 1: [----------] Global test environment set-up. 1: [----------] 3 tests from count 1: [ RUN ] count.small_example 1: [ OK ] count.small_example (3 ms) 1: [ RUN ] count.small_example_paired 1: [ OK ] count.small_example_paired (3 ms) 1: [ RUN ] count.small_example_exclude 1: [ OK ] count.small_example_exclude (0 ms) 1: [----------] 3 tests from count (8 ms total) 1: 1: [----------] Global test environment tear-down 1: [==========] 3 tests from 1 test suite ran. (8 ms total) 1: [ PASSED ] 3 tests. 2: Running main() from ./googletest/src/gtest_main.cc 2: [==========] Running 10 tests from 1 test suite. 2: [----------] Global test environment set-up. 2: [----------] 10 tests from estimate 2: [ RUN ] estimate.small_example 2: [ OK ] estimate.small_example (2 ms) 2: [ RUN ] estimate.small_example_uncompressed 2: [ OK ] estimate.small_example_uncompressed (0 ms) 2: [ RUN ] estimate.small_example_gene_not_found 2: [ OK ] estimate.small_example_gene_not_found (1 ms) 2: [ RUN ] estimate.small_example_different_expressions_per_level 2: [ OK ] estimate.small_example_different_expressions_per_level (0 ms) 2: [ RUN ] estimate.small_example_different_expressions_per_level_normalization_1 2: [ OK ] estimate.small_example_different_expressions_per_level_normalization_1 (0 ms) 2: [ RUN ] estimate.small_example_different_expressions_per_level_normalization_1_uncompressed 2: [ OK ] estimate.small_example_different_expressions_per_level_normalization_1_uncompressed (0 ms) 2: [ RUN ] estimate.example 3: Running main() from ./googletest/src/gtest_main.cc 3: [==========] Running 8 tests from 1 test suite. 3: [----------] Global test environment set-up. 3: [----------] 8 tests from ibf 3: [ RUN ] ibf.given_expression_thresholds 3: [ OK ] ibf.given_expression_thresholds (2 ms) 3: [ RUN ] ibf.given_expression_thresholds_include_file 3: [ OK ] ibf.given_expression_thresholds_include_file (1 ms) 3: [ RUN ] ibf.given_expression_thresholds_exclude_file 3: [ OK ] ibf.given_expression_thresholds_exclude_file (0 ms) 3: [ RUN ] ibf.no_given_expression_thresholds 3: [ OK ] ibf.no_given_expression_thresholds (0 ms) 3: [ RUN ] ibf.expression_thresholds_by_genome 3: [ OK ] ibf.expression_thresholds_by_genome (0 ms) 3: [ RUN ] ibf.throws 3: [ OK ] ibf.throws (0 ms) 3: [ RUN ] ibf.given_cutoffs 3: [ OK ] ibf.given_cutoffs (0 ms) 3: [ RUN ] ibf.different_file_sizes 4: Running main() from ./googletest/src/gtest_main.cc 4: [==========] Running 4 tests from 1 test suite. 4: [----------] Global test environment set-up. 4: [----------] 4 tests from ibfmin 4: [ RUN ] ibfmin.given_expression_thresholds 4: [ OK ] ibfmin.given_expression_thresholds (0 ms) 4: [ RUN ] ibfmin.no_given_expression_thresholds 4: [ OK ] ibfmin.no_given_expression_thresholds (0 ms) 4: [ RUN ] ibfmin.expression_thresholds_by_genome 4: [ OK ] ibfmin.expression_thresholds_by_genome (1 ms) 4: [ RUN ] ibfmin.different_shape 4: [ OK ] ibfmin.different_shape (2 ms) 4: [----------] 4 tests from ibfmin (5 ms total) 4: 4: [----------] Global test environment tear-down 4: [==========] 4 tests from 1 test suite ran. (5 ms total) 4: [ PASSED ] 4 tests. 5: Running main() from ./googletest/src/gtest_main.cc 5: [==========] Running 8 tests from 1 test suite. 5: [----------] Global test environment set-up. 5: [----------] 8 tests from minimiser 5: [ RUN ] minimiser.small_example 6: Running main() from ./googletest/src/gtest_main.cc 6: [==========] Running 2 tests from 1 test suite. 6: [----------] Global test environment set-up. 6: [----------] 2 tests from needle_options_test 6: [ RUN ] needle_options_test.no_options 6: [ OK ] needle_options_test.no_options (9 ms) 6: [ RUN ] needle_options_test.fail_no_argument 7: Running main() from ./googletest/src/gtest_main.cc 7: [==========] Running 19 tests from 1 test suite. 7: [----------] Global test environment set-up. 7: [----------] 19 tests from ibf_options_test 7: [ RUN ] ibf_options_test.ibf_no_options 7: [ OK ] ibf_options_test.ibf_no_options (7 ms) 7: [ RUN ] ibf_options_test.ibf_fail_no_argument 8: Running main() from ./googletest/src/gtest_main.cc 8: [==========] Running 8 tests from 1 test suite. 8: [----------] Global test environment set-up. 8: [----------] 8 tests from minimiser_options_test 8: [ RUN ] minimiser_options_test.no_options 9: Running main() from ./googletest/src/gtest_main.cc 9: [==========] Running 5 tests from 1 test suite. 9: [----------] Global test environment set-up. 9: [----------] 5 tests from estimate_options_test 9: [ RUN ] estimate_options_test.no_options 1/10 Test #1: test/api/count_test ............... Passed 0.04 sec 2/10 Test #4: test/api/ibfmin_test .............. Passed 0.03 sec 8: [ OK ] minimiser_options_test.no_options (8 ms) 8: [ RUN ] minimiser_options_test.fail_no_argument 10: Running main() from ./googletest/src/gtest_main.cc 10: [==========] Running 5 tests from 1 test suite. 10: [----------] Global test environment set-up. 10: [----------] 5 tests from count_options_test 10: [ RUN ] count_options_test.no_options 5: [ OK ] minimiser.small_example (11 ms) 5: [ RUN ] minimiser.small_example_different_shape 5: [ OK ] minimiser.small_example_different_shape (1 ms) 5: [ RUN ] minimiser.small_example_samplewise 6: [ OK ] needle_options_test.fail_no_argument (8 ms) 6: [----------] 2 tests from needle_options_test (17 ms total) 6: 6: [----------] Global test environment tear-down 6: [==========] 2 tests from 1 test suite ran. (17 ms total) 6: [ PASSED ] 2 tests. 3/10 Test #6: test/cli/needle_options_test ...... Passed 0.03 sec 5: [ OK ] minimiser.small_example_samplewise (2 ms) 5: [ RUN ] minimiser.cutoff_by_filesize 5: [ OK ] minimiser.cutoff_by_filesize (0 ms) 5: [ RUN ] minimiser.small_example_two_threads 5: [ OK ] minimiser.small_example_two_threads (1 ms) 5: [ RUN ] minimiser.small_example_include 7: [ OK ] ibf_options_test.ibf_fail_no_argument (16 ms) 7: [ RUN ] ibf_options_test.ibf_fail_contradiction 5: [ OK ] minimiser.small_example_include (0 ms) 5: [ RUN ] minimiser.small_example_exclude 5: [ OK ] minimiser.small_example_exclude (0 ms) 5: [ RUN ] minimiser.small_example_shape 5: [ OK ] minimiser.small_example_shape (0 ms) 5: [----------] 8 tests from minimiser (21 ms total) 5: 5: [----------] Global test environment tear-down 5: [==========] 8 tests from 1 test suite ran. (21 ms total) 5: [ PASSED ] 8 tests. 8: [ OK ] minimiser_options_test.fail_no_argument (11 ms) 8: [ RUN ] minimiser_options_test.with_arguments 4/10 Test #5: test/api/minimiser_test ........... Passed 0.04 sec 9: [ OK ] estimate_options_test.no_options (18 ms) 9: [ RUN ] estimate_options_test.fail_no_argument 10: [ OK ] count_options_test.no_options (13 ms) 10: [ RUN ] count_options_test.fail_no_argument 9: [ OK ] estimate_options_test.fail_no_argument (6 ms) 9: [ RUN ] estimate_options_test.with_argument 7: [ OK ] ibf_options_test.ibf_fail_contradiction (12 ms) 7: [ RUN ] ibf_options_test.ibf_fail_contradiction2 10: [ OK ] count_options_test.fail_no_argument (9 ms) 10: [ RUN ] count_options_test.with_arguments 7: [ OK ] ibf_options_test.ibf_fail_contradiction2 (15 ms) 7: [ RUN ] ibf_options_test.ibf_fail_no_fpr 8: [ OK ] minimiser_options_test.with_arguments (25 ms) 8: [ RUN ] minimiser_options_test.cutoff 10: [ OK ] count_options_test.with_arguments (14 ms) 10: [ RUN ] count_options_test.multithreads 8: [ OK ] minimiser_options_test.cutoff (16 ms) 8: [ RUN ] minimiser_options_test.multiple_sample 10: [ OK ] count_options_test.multithreads (18 ms) 10: [ RUN ] count_options_test.paired 7: [ OK ] ibf_options_test.ibf_fail_no_fpr (28 ms) 7: [ RUN ] ibf_options_test.ibf_fail_incorrect_number_of_fprs 10: [ OK ] count_options_test.paired (15 ms) 10: [----------] 5 tests from count_options_test (71 ms total) 10: 10: [----------] Global test environment tear-down 10: [==========] 5 tests from 1 test suite ran. (71 ms total) 10: [ PASSED ] 5 tests. 8: [ OK ] minimiser_options_test.multiple_sample (19 ms) 8: [ RUN ] minimiser_options_test.multithreads 5/10 Test #10: test/cli/count_options_test ....... Passed 0.08 sec 7: [ OK ] ibf_options_test.ibf_fail_incorrect_number_of_fprs (10 ms) 7: [ RUN ] ibf_options_test.ibf_with_argument 8: [ OK ] minimiser_options_test.multithreads (20 ms) 8: [ RUN ] minimiser_options_test.paired 8: [ OK ] minimiser_options_test.paired (16 ms) 8: [ RUN ] minimiser_options_test.invalid_argument 8: [ OK ] minimiser_options_test.invalid_argument (8 ms) 8: [----------] 8 tests from minimiser_options_test (127 ms total) 8: 8: [----------] Global test environment tear-down 8: [==========] 8 tests from 1 test suite ran. (127 ms total) 8: [ PASSED ] 8 tests. 6/10 Test #8: test/cli/minimiser_options_test ... Passed 0.13 sec 3: [ OK ] ibf.different_file_sizes (6113 ms) 3: [----------] 8 tests from ibf (6118 ms total) 3: 3: [----------] Global test environment tear-down 3: [==========] 8 tests from 1 test suite ran. (6118 ms total) 3: [ PASSED ] 8 tests. 7/10 Test #3: test/api/ibf_test ................. Passed 6.12 sec 2: [ OK ] estimate.example (10319 ms) 2: [ RUN ] estimate.example_multiple_threads 7: [ OK ] ibf_options_test.ibf_with_argument (10582 ms) 7: [ RUN ] ibf_options_test.ibf_with_argument_with_options 9: [ OK ] estimate_options_test.with_argument (15604 ms) 9: [ RUN ] estimate_options_test.with_argument_normalization_method 2: [ OK ] estimate.example_multiple_threads (14307 ms) 2: [ RUN ] estimate.example_different_expressions_per_level 7: [ OK ] ibf_options_test.ibf_with_argument_with_options (14470 ms) 7: [ RUN ] ibf_options_test.ibf_with_argument_with_userdefined_shape 2: [ OK ] estimate.example_different_expressions_per_level (2434 ms) 2: [ RUN ] estimate.example_different_expressions_per_level_multiple_threads 2: [ OK ] estimate.example_different_expressions_per_level_multiple_threads (2273 ms) 2: [----------] 10 tests from estimate (29342 ms total) 2: 2: [----------] Global test environment tear-down 2: [==========] 10 tests from 1 test suite ran. (29343 ms total) 2: [ PASSED ] 10 tests. 8/10 Test #2: test/api/estimate_test ............ Passed 29.35 sec 9: [ OK ] estimate_options_test.with_argument_normalization_method (16516 ms) 9: [ RUN ] estimate_options_test.with_argument_out 7: [ OK ] ibf_options_test.ibf_with_argument_with_userdefined_shape (10936 ms) 7: [ RUN ] ibf_options_test.ibfmin_no_options 7: [ OK ] ibf_options_test.ibfmin_no_options (6 ms) 7: [ RUN ] ibf_options_test.ibfmin_fail_no_argument 7: [ OK ] ibf_options_test.ibfmin_fail_no_argument (5 ms) 7: [ RUN ] ibf_options_test.ibfmin_fail_contradiction 7: [ OK ] ibf_options_test.ibfmin_fail_contradiction (5 ms) 7: [ RUN ] ibf_options_test.ibfmin_fail_contradiction2 7: [ OK ] ibf_options_test.ibfmin_fail_contradiction2 (5 ms) 7: [ RUN ] ibf_options_test.ibfmin_fail_no_fpr 7: [ OK ] ibf_options_test.ibfmin_fail_no_fpr (6 ms) 7: [ RUN ] ibf_options_test.ibfmin_fail_incorrect_number_of_fprs 7: [ OK ] ibf_options_test.ibfmin_fail_incorrect_number_of_fprs (5 ms) 7: [ RUN ] ibf_options_test.ibfmin_with_argument 7: [ OK ] ibf_options_test.ibfmin_with_argument (22 ms) 7: [ RUN ] ibf_options_test.compressed 7: [ OK ] ibf_options_test.compressed (7 ms) 7: [ RUN ] ibf_options_test.more_hash_functions 7: [ OK ] ibf_options_test.more_hash_functions (8 ms) 7: [ RUN ] ibf_options_test.expression_thresholds 7: [ OK ] ibf_options_test.expression_thresholds (6 ms) 7: [----------] 19 tests from ibf_options_test (36161 ms total) 7: 7: [----------] Global test environment tear-down 7: [==========] 19 tests from 1 test suite ran. (36161 ms total) 7: [ PASSED ] 19 tests. 9/10 Test #7: test/cli/ibf_options_test ......... Passed 36.17 sec 9: [ OK ] estimate_options_test.with_argument_out (11369 ms) 9: [----------] 5 tests from estimate_options_test (43515 ms total) 9: 9: [----------] Global test environment tear-down 9: [==========] 5 tests from 1 test suite ran. (43515 ms total) 9: [ PASSED ] 5 tests. 10/10 Test #9: test/cli/estimate_options_test .... Passed 43.52 sec 100% tests passed, 0 tests failed out of 10 Total Test time (real) = 259.90 sec make[1]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/seqan-needle-1.0.1.0.0.git.3011926\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/seqan-needle-1.0.1.0.0.git.3011926+ds -B/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/seqan-needle-1.0.1.0.0.git.3011926+ds/debian/tmp/usr/include/robin_hood.h -- Installing: /build/seqan-needle-1.0.1.0.0.git.3011926+ds/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/robin_hood/robin_hoodConfig.cmake -- Installing: /build/seqan-needle-1.0.1.0.0.git.3011926+ds/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/robin_hood/robin_hood-targets.cmake make[1]: Leaving directory '/build/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-x86_64-linux-gnu' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'seqan-needle' in '../seqan-needle_1.0.1.0.0.git.3011926+ds-4_amd64.deb'. dpkg-deb: building package 'seqan-needle-dbgsym' in '../seqan-needle-dbgsym_1.0.1.0.0.git.3011926+ds-4_amd64.deb'. dpkg-deb: building package 'seqan-needle-doc' in '../seqan-needle-doc_1.0.1.0.0.git.3011926+ds-4_all.deb'. dpkg-genbuildinfo --build=binary -O../seqan-needle_1.0.1.0.0.git.3011926+ds-4_amd64.buildinfo dpkg-genchanges --build=binary -O../seqan-needle_1.0.1.0.0.git.3011926+ds-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2822293 and its subdirectories I: Current time: Fri Jun 14 03:50:36 -12 2024 I: pbuilder-time-stamp: 1718380236