I: pbuilder: network access will be disabled during build
I: Current time: Sat Jun 1 14:39:45 -12 2024
I: pbuilder-time-stamp: 1717295985
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [tigr-glimmer_3.02b-6.dsc]
I: copying [./tigr-glimmer_3.02b.orig.tar.gz]
I: copying [./tigr-glimmer_3.02b-6.debian.tar.xz]
I: Extracting source
gpgv: Signature made Sat Oct 16 06:40:48 2021 -12
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./tigr-glimmer_3.02b-6.dsc: no acceptable signature found
dpkg-source: info: extracting tigr-glimmer in tigr-glimmer-3.02b
dpkg-source: info: unpacking tigr-glimmer_3.02b.orig.tar.gz
dpkg-source: info: unpacking tigr-glimmer_3.02b-6.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 10_gcc4.3.patch
dpkg-source: info: applying mayhem.patch
dpkg-source: info: applying make-errs.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/4064230/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='amd64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16'
DISTRIBUTION='bookworm'
HOME='/root'
HOST_ARCH='amd64'
IFS='
'
INVOCATION_ID='baabda8076264e6ab2bbb726c4dab0e7'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='4064230'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.llWvRk8y/pbuilderrc_p5xA --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.llWvRk8y/b1 --logfile b1/build.log tigr-glimmer_3.02b-6.dsc'
SUDO_GID='111'
SUDO_UID='106'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://85.184.249.68:3128'
I: uname -a
Linux ionos15-amd64 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux
I: ls -l /bin
total 5632
-rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash
-rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2
-rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep
-rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2
-rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore
-rwxr-xr-x 1 root root 44016 Sep 20 2022 cat
-rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp
-rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod
-rwxr-xr-x 1 root root 72752 Sep 20 2022 chown
-rwxr-xr-x 1 root root 151152 Sep 20 2022 cp
-rwxr-xr-x 1 root root 125640 Jan 5 2023 dash
-rwxr-xr-x 1 root root 121904 Sep 20 2022 date
-rwxr-xr-x 1 root root 89240 Sep 20 2022 dd
-rwxr-xr-x 1 root root 102200 Sep 20 2022 df
-rwxr-xr-x 1 root root 151344 Sep 20 2022 dir
-rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg
lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname
-rwxr-xr-x 1 root root 43856 Sep 20 2022 echo
-rwxr-xr-x 1 root root 41 Jan 24 2023 egrep
-rwxr-xr-x 1 root root 35664 Sep 20 2022 false
-rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep
-rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt
-rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount
-rwxr-xr-x 1 root root 203152 Jan 24 2023 grep
-rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip
-rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe
-rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip
-rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname
-rwxr-xr-x 1 root root 72824 Sep 20 2022 ln
-rwxr-xr-x 1 root root 53024 Mar 23 2023 login
-rwxr-xr-x 1 root root 151344 Sep 20 2022 ls
-rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk
-rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir
-rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod
-rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp
-rwxr-xr-x 1 root root 59712 Mar 22 2023 more
-rwsr-xr-x 1 root root 59704 Mar 22 2023 mount
-rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint
-rwxr-xr-x 1 root root 142968 Sep 20 2022 mv
lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd
lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash
-rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink
-rwxr-xr-x 1 root root 72752 Sep 20 2022 rm
-rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir
-rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts
-rwxr-xr-x 1 root root 126424 Jan 5 2023 sed
lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash
-rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep
-rwxr-xr-x 1 root root 85008 Sep 20 2022 stty
-rwsr-xr-x 1 root root 72000 Mar 22 2023 su
-rwxr-xr-x 1 root root 39824 Sep 20 2022 sync
-rwxr-xr-x 1 root root 531984 Apr 6 2023 tar
-rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile
-rwxr-xr-x 1 root root 109616 Sep 20 2022 touch
-rwxr-xr-x 1 root root 35664 Sep 20 2022 true
-rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server
-rwsr-xr-x 1 root root 35128 Mar 22 2023 umount
-rwxr-xr-x 1 root root 43888 Sep 20 2022 uname
-rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress
-rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir
-rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl
lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat
-rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp
-rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff
-rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep
-rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep
-rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce
-rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep
-rwxr-xr-x 1 root root 2206 Apr 9 2022 zless
-rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore
-rwxr-xr-x 1 root root 4577 Apr 9 2022 znew
I: user script /srv/workspace/pbuilder/4064230/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13)
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19596 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget
0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded.
Need to get 18.7 MB of archives. After unpacking 72.4 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 2 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB]
Get: 3 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB]
Get: 4 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB]
Get: 5 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB]
Get: 6 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB]
Get: 7 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB]
Get: 8 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB]
Get: 9 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB]
Get: 10 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB]
Get: 11 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB]
Get: 12 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB]
Get: 13 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get: 15 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB]
Get: 16 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 17 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB]
Get: 18 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 19 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 20 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B]
Get: 21 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 22 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 23 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB]
Get: 24 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB]
Get: 25 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB]
Get: 26 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB]
Get: 27 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB]
Get: 28 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 29 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 30 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB]
Fetched 18.7 MB in 0s (90.0 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sensible-utils.
(Reading database ...
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(Reading database ... 10%
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19596 files and directories currently installed.)
Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ...
Unpacking sensible-utils (0.0.17+nmu1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_amd64.deb ...
Unpacking libmagic-mgc (1:5.44-3) ...
Selecting previously unselected package libmagic1:amd64.
Preparing to unpack .../02-libmagic1_1%3a5.44-3_amd64.deb ...
Unpacking libmagic1:amd64 (1:5.44-3) ...
Selecting previously unselected package file.
Preparing to unpack .../03-file_1%3a5.44-3_amd64.deb ...
Unpacking file (1:5.44-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../04-gettext-base_0.21-12_amd64.deb ...
Unpacking gettext-base (0.21-12) ...
Selecting previously unselected package libuchardet0:amd64.
Preparing to unpack .../05-libuchardet0_0.0.7-1_amd64.deb ...
Unpacking libuchardet0:amd64 (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../06-groff-base_1.22.4-10_amd64.deb ...
Unpacking groff-base (1.22.4-10) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_amd64.deb ...
Unpacking bsdextrautils (2.38.1-5+b1) ...
Selecting previously unselected package libpipeline1:amd64.
Preparing to unpack .../08-libpipeline1_1.5.7-1_amd64.deb ...
Unpacking libpipeline1:amd64 (1.5.7-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../09-man-db_2.11.2-2_amd64.deb ...
Unpacking man-db (2.11.2-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../10-m4_1.4.19-3_amd64.deb ...
Unpacking m4 (1.4.19-3) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../11-autoconf_2.71-3_all.deb ...
Unpacking autoconf (2.71-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../14-autopoint_0.21-12_all.deb ...
Unpacking autopoint (0.21-12) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ...
Unpacking libdebhelper-perl (13.11.4) ...
Selecting previously unselected package libtool.
Preparing to unpack .../16-libtool_2.4.7-5_all.deb ...
Unpacking libtool (2.4.7-5) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../17-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ...
Unpacking libsub-override-perl (0.09-4) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.13.1-1) ...
Selecting previously unselected package libelf1:amd64.
Preparing to unpack .../22-libelf1_0.188-2.1_amd64.deb ...
Unpacking libelf1:amd64 (0.188-2.1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../23-dwz_0.15-1_amd64.deb ...
Unpacking dwz (0.15-1) ...
Selecting previously unselected package libicu72:amd64.
Preparing to unpack .../24-libicu72_72.1-3_amd64.deb ...
Unpacking libicu72:amd64 (72.1-3) ...
Selecting previously unselected package libxml2:amd64.
Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.2_amd64.deb ...
Unpacking libxml2:amd64 (2.9.14+dfsg-1.2) ...
Selecting previously unselected package gettext.
Preparing to unpack .../26-gettext_0.21-12_amd64.deb ...
Unpacking gettext (0.21-12) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../29-debhelper_13.11.4_all.deb ...
Unpacking debhelper (13.11.4) ...
Setting up libpipeline1:amd64 (1.5.7-1) ...
Setting up libicu72:amd64 (72.1-3) ...
Setting up bsdextrautils (2.38.1-5+b1) ...
Setting up libmagic-mgc (1:5.44-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.11.4) ...
Setting up libmagic1:amd64 (1:5.44-3) ...
Setting up gettext-base (0.21-12) ...
Setting up m4 (1.4.19-3) ...
Setting up file (1:5.44-3) ...
Setting up autotools-dev (20220109.1) ...
Setting up autopoint (0.21-12) ...
Setting up autoconf (2.71-3) ...
Setting up sensible-utils (0.0.17+nmu1) ...
Setting up libuchardet0:amd64 (0.0.7-1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libelf1:amd64 (0.188-2.1) ...
Setting up libxml2:amd64 (2.9.14+dfsg-1.2) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up gettext (0.21-12) ...
Setting up libtool (2.4.7-5) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.22.4-10) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.11.2-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up debhelper (13.11.4) ...
Processing triggers for libc-bin (2.36-9) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/tigr-glimmer-3.02b/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../tigr-glimmer_3.02b-6_source.changes
dpkg-buildpackage: info: source package tigr-glimmer
dpkg-buildpackage: info: source version 3.02b-6
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
debian/rules clean
dh clean
debian/rules override_dh_clean
make[1]: Entering directory '/build/tigr-glimmer-3.02b'
dh_clean
cd src; make clean
make[2]: Entering directory '/build/tigr-glimmer-3.02b/src'
cd /build/tigr-glimmer-3.02b/obj; rm -f
cd /build/tigr-glimmer-3.02b/lib; rm -f
cd /build/tigr-glimmer-3.02b/bin; rm -f
rm -f
echo "* Make Target is " clean;
* Make Target is clean
set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "##### Making Directory " `pwd` " " clean " #####"; make clean; cd ..; fi; done;
##### Making Directory /build/tigr-glimmer-3.02b/src/Common clean #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Common'
if [ -e gene.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc gene.cc \
| sed '\''s/gene\\.o[ :]*/& gene.d/g'\'' > gene.d' ; \
fi ;
if [ -e fasta.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc fasta.cc \
| sed '\''s/fasta\\.o[ :]*/& fasta.d/g'\'' > fasta.d' ; \
fi ;
if [ -e delcher.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc delcher.cc \
| sed '\''s/delcher\\.o[ :]*/& delcher.d/g'\'' > delcher.d' ; \
fi ;
cd /build/tigr-glimmer-3.02b/obj; rm -f delcher.o fasta.o gene.o
cd /build/tigr-glimmer-3.02b/lib; rm -f libGLMcommon.a
cd /build/tigr-glimmer-3.02b/bin; rm -f
rm -f delcher.d fasta.d gene.d
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Common'
##### Making Directory /build/tigr-glimmer-3.02b/src/ICM clean #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/ICM'
if [ -e score-fixed.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc score-fixed.cc \
| sed '\''s/score-fixed\\.o[ :]*/& score-fixed.d/g'\'' > score-fixed.d' ; \
fi ;
if [ -e build-fixed.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc build-fixed.cc \
| sed '\''s/build-fixed\\.o[ :]*/& build-fixed.d/g'\'' > build-fixed.d' ; \
fi ;
if [ -e build-icm.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc build-icm.cc \
| sed '\''s/build-icm\\.o[ :]*/& build-icm.d/g'\'' > build-icm.d' ; \
fi ;
if [ -e icm.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc icm.cc \
| sed '\''s/icm\\.o[ :]*/& icm.d/g'\'' > icm.d' ; \
fi ;
cd /build/tigr-glimmer-3.02b/obj; rm -f icm.o build-icm.o build-fixed.o score-fixed.o
cd /build/tigr-glimmer-3.02b/lib; rm -f libGLMicm.a
cd /build/tigr-glimmer-3.02b/bin; rm -f build-icm build-fixed score-fixed
rm -f icm.d build-icm.d build-fixed.d score-fixed.d
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/ICM'
##### Making Directory /build/tigr-glimmer-3.02b/src/Glimmer clean #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Glimmer'
if [ -e test.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc test.cc \
| sed '\''s/test\\.o[ :]*/& test.d/g'\'' > test.d' ; \
fi ;
if [ -e long-orfs.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc long-orfs.cc \
| sed '\''s/long-orfs\\.o[ :]*/& long-orfs.d/g'\'' > long-orfs.d' ; \
fi ;
if [ -e glimmer3.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc glimmer3.cc \
| sed '\''s/glimmer3\\.o[ :]*/& glimmer3.d/g'\'' > glimmer3.d' ; \
fi ;
if [ -e anomaly.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc anomaly.cc \
| sed '\''s/anomaly\\.o[ :]*/& anomaly.d/g'\'' > anomaly.d' ; \
fi ;
cd /build/tigr-glimmer-3.02b/obj; rm -f anomaly.o glimmer3.o long-orfs.o test.o
cd /build/tigr-glimmer-3.02b/lib; rm -f
cd /build/tigr-glimmer-3.02b/bin; rm -f anomaly glimmer3 long-orfs test
rm -f anomaly.d glimmer3.d long-orfs.d test.d
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Glimmer'
##### Making Directory /build/tigr-glimmer-3.02b/src/Util clean #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Util'
if [ -e window-acgt.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc window-acgt.cc \
| sed '\''s/window-acgt\\.o[ :]*/& window-acgt.d/g'\'' > window-acgt.d' ; \
fi ;
if [ -e uncovered.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc uncovered.cc \
| sed '\''s/uncovered\\.o[ :]*/& uncovered.d/g'\'' > uncovered.d' ; \
fi ;
if [ -e start-codon-distrib.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc start-codon-distrib.cc \
| sed '\''s/start-codon-distrib\\.o[ :]*/& start-codon-distrib.d/g'\'' > start-codon-distrib.d' ; \
fi ;
if [ -e multi-extract.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc multi-extract.cc \
| sed '\''s/multi-extract\\.o[ :]*/& multi-extract.d/g'\'' > multi-extract.d' ; \
fi ;
if [ -e extract.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc extract.cc \
| sed '\''s/extract\\.o[ :]*/& extract.d/g'\'' > extract.d' ; \
fi ;
if [ -e entropy-score.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc entropy-score.cc \
| sed '\''s/entropy-score\\.o[ :]*/& entropy-score.d/g'\'' > entropy-score.d' ; \
fi ;
if [ -e entropy-profile.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc entropy-profile.cc \
| sed '\''s/entropy-profile\\.o[ :]*/& entropy-profile.d/g'\'' > entropy-profile.d' ; \
fi ;
cd /build/tigr-glimmer-3.02b/obj; rm -f entropy-profile.o entropy-score.o extract.o multi-extract.o start-codon-distrib.o uncovered.o window-acgt.o
cd /build/tigr-glimmer-3.02b/lib; rm -f
cd /build/tigr-glimmer-3.02b/bin; rm -f entropy-profile entropy-score extract multi-extract start-codon-distrib uncovered window-acgt
rm -f entropy-profile.d entropy-score.d extract.d multi-extract.d start-codon-distrib.d uncovered.d window-acgt.d
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Util'
make[2]: Leaving directory '/build/tigr-glimmer-3.02b/src'
rm -f bin/* lib/* obj/*
make[1]: Leaving directory '/build/tigr-glimmer-3.02b'
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
debian/rules override_dh_auto_build
make[1]: Entering directory '/build/tigr-glimmer-3.02b'
dh_auto_build --sourcedirectory=src -- CFLAGS="-g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now"
cd src && make -j16 "INSTALL=install --strip-program=true" "CFLAGS=-g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security" "CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2" "CXXFLAGS=-g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security" "LDFLAGS=-Wl,-z,relro -Wl,-z,now"
make[2]: Entering directory '/build/tigr-glimmer-3.02b/src'
TGT=objs
echo "* Make Target is " all;
* Make Target is all
set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "##### Making Directory " `pwd` " " all " #####"; make all; cd ..; fi; done;
##### Making Directory /build/tigr-glimmer-3.02b/src/Common all #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Common'
make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
if [ -e gene.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc gene.cc \
| sed '\''s/gene\\.o[ :]*/& gene.d/g'\'' > gene.d' ; \
fi ;
if [ -e fasta.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc fasta.cc \
| sed '\''s/fasta\\.o[ :]*/& fasta.d/g'\'' > fasta.d' ; \
fi ;
if [ -e delcher.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc delcher.cc \
| sed '\''s/delcher\\.o[ :]*/& delcher.d/g'\'' > delcher.d' ; \
fi ;
make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
@@@@@@@@@@@@@@@@@@@ delcher.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e delcher.cc ] ; then \
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
-I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/delcher.o delcher.cc ; \
else \
/cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
" :/build/tigr-glimmer-3.02b/obj" delcher.o ; \
fi ;
@@@@@@@@@@@@@@@@@@@ fasta.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e fasta.cc ] ; then \
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
-I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/fasta.o fasta.cc ; \
else \
/cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
" :/build/tigr-glimmer-3.02b/obj" fasta.o ; \
fi ;
@@@@@@@@@@@@@@@@@@@ gene.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e gene.cc ] ; then \
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
-I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/gene.o gene.cc ; \
else \
/cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
" :/build/tigr-glimmer-3.02b/obj" gene.o ; \
fi ;
gene.cc: In member function 'bool PWM_t::Read(FILE*)':
gene.cc:319:11: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
319 | fscanf (fp, "%d", & width);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~
gene.cc:332:14: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
332 | fscanf (fp, "%s", tag); // skip tag in first column
| ~~~~~~~^~~~~~~~~~~~~~~
gene.cc:335:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
335 | fscanf (fp, "%lf", & x);
| ~~~~~~~^~~~~~~~~~~~~~~~
gene.cc: In function 'int Read_String(FILE*, char*&, long int&, char*, int)':
gene.cc:848:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
848 | fgets (Line, MAX_LINE, fp);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
################### libGLMcommon.a #####################
cd /build/tigr-glimmer-3.02b/obj && \
ar rvs /build/tigr-glimmer-3.02b/lib/libGLMcommon.a delcher.o fasta.o gene.o
ar: creating /build/tigr-glimmer-3.02b/lib/libGLMcommon.a
a - delcher.o
a - fasta.o
a - gene.o
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Common'
##### Making Directory /build/tigr-glimmer-3.02b/src/ICM all #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/ICM'
make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
if [ -e score-fixed.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc score-fixed.cc \
| sed '\''s/score-fixed\\.o[ :]*/& score-fixed.d/g'\'' > score-fixed.d' ; \
fi ;
if [ -e build-fixed.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc build-fixed.cc \
| sed '\''s/build-fixed\\.o[ :]*/& build-fixed.d/g'\'' > build-fixed.d' ; \
fi ;
if [ -e build-icm.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc build-icm.cc \
| sed '\''s/build-icm\\.o[ :]*/& build-icm.d/g'\'' > build-icm.d' ; \
fi ;
if [ -e icm.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc icm.cc \
| sed '\''s/icm\\.o[ :]*/& icm.d/g'\'' > icm.d' ; \
fi ;
make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
@@@@@@@@@@@@@@@@@@@ icm.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e icm.cc ] ; then \
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
-I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/icm.o icm.cc ; \
else \
/cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
" :/build/tigr-glimmer-3.02b/obj" icm.o ; \
fi ;
icm.cc: In member function 'void Fixed_Length_ICM_t::read(const char*)':
icm.cc:1491:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
1491 | fread (line, sizeof (char), ID_STRING_LEN, fp); // skip the text header line
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
icm.cc:1519:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
1519 | fread (permutation, sizeof (int), length, fp);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@@@@@@@@@@@@@@@@@@ build-icm.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e build-icm.cc ] ; then \
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
-I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/build-icm.o build-icm.cc ; \
else \
/cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
" :/build/tigr-glimmer-3.02b/obj" build-icm.o ; \
fi ;
@@@@@@@@@@@@@@@@@@@ build-fixed.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e build-fixed.cc ] ; then \
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
-I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/build-fixed.o build-fixed.cc ; \
else \
/cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
" :/build/tigr-glimmer-3.02b/obj" build-fixed.o ; \
fi ;
@@@@@@@@@@@@@@@@@@@ score-fixed.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e score-fixed.cc ] ; then \
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
-I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/score-fixed.o score-fixed.cc ; \
else \
/cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
" :/build/tigr-glimmer-3.02b/obj" score-fixed.o ; \
fi ;
################### libGLMicm.a #####################
cd /build/tigr-glimmer-3.02b/obj && \
ar rvs /build/tigr-glimmer-3.02b/lib/libGLMicm.a icm.o build-icm.o build-fixed.o score-fixed.o
ar: creating /build/tigr-glimmer-3.02b/lib/libGLMicm.a
a - icm.o
a - build-icm.o
a - build-fixed.o
a - score-fixed.o
++++++++++++++++++++ build-icm ++++++++++++++++++++++
set -e ; \
STATUS=0 ; \
if [ -z "build-icm.o" ] ; then \
cd /build/tigr-glimmer-3.02b/obj; \
cc -o /build/tigr-glimmer-3.02b/bin/build-icm -Wl,-z,relro -Wl,-z,now \
-L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-icm.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
-lGLMicm \
|| STATUS=${?} ; \
if [ ${STATUS} != 0 ] ; then \
rm -f /build/tigr-glimmer-3.02b/bin/build-icm; \
exit ${STATUS}; \
fi; \
else \
cd /build/tigr-glimmer-3.02b/obj; \
g++ -o /build/tigr-glimmer-3.02b/bin/build-icm -Wl,-z,relro -Wl,-z,now \
-L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-icm.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
-lGLMicm \
|| STATUS=${?} ; \
if [ ${STATUS} != 0 ] ; then \
rm -f /build/tigr-glimmer-3.02b/bin/build-icm; \
exit ${STATUS}; \
fi; \
fi ;
++++++++++++++++++++ build-fixed ++++++++++++++++++++++
set -e ; \
STATUS=0 ; \
if [ -z "build-fixed.o" ] ; then \
cd /build/tigr-glimmer-3.02b/obj; \
cc -o /build/tigr-glimmer-3.02b/bin/build-fixed -Wl,-z,relro -Wl,-z,now \
-L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-fixed.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
-lGLMicm \
|| STATUS=${?} ; \
if [ ${STATUS} != 0 ] ; then \
rm -f /build/tigr-glimmer-3.02b/bin/build-fixed; \
exit ${STATUS}; \
fi; \
else \
cd /build/tigr-glimmer-3.02b/obj; \
g++ -o /build/tigr-glimmer-3.02b/bin/build-fixed -Wl,-z,relro -Wl,-z,now \
-L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-fixed.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
-lGLMicm \
|| STATUS=${?} ; \
if [ ${STATUS} != 0 ] ; then \
rm -f /build/tigr-glimmer-3.02b/bin/build-fixed; \
exit ${STATUS}; \
fi; \
fi ;
++++++++++++++++++++ score-fixed ++++++++++++++++++++++
set -e ; \
STATUS=0 ; \
if [ -z "score-fixed.o" ] ; then \
cd /build/tigr-glimmer-3.02b/obj; \
cc -o /build/tigr-glimmer-3.02b/bin/score-fixed -Wl,-z,relro -Wl,-z,now \
-L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib score-fixed.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
-lGLMicm \
|| STATUS=${?} ; \
if [ ${STATUS} != 0 ] ; then \
rm -f /build/tigr-glimmer-3.02b/bin/score-fixed; \
exit ${STATUS}; \
fi; \
else \
cd /build/tigr-glimmer-3.02b/obj; \
g++ -o /build/tigr-glimmer-3.02b/bin/score-fixed -Wl,-z,relro -Wl,-z,now \
-L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib score-fixed.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
-lGLMicm \
|| STATUS=${?} ; \
if [ ${STATUS} != 0 ] ; then \
rm -f /build/tigr-glimmer-3.02b/bin/score-fixed; \
exit ${STATUS}; \
fi; \
fi ;
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/ICM'
##### Making Directory /build/tigr-glimmer-3.02b/src/Glimmer all #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Glimmer'
make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
if [ -e test.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc test.cc \
| sed '\''s/test\\.o[ :]*/& test.d/g'\'' > test.d' ; \
fi ;
if [ -e long-orfs.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc long-orfs.cc \
| sed '\''s/long-orfs\\.o[ :]*/& long-orfs.d/g'\'' > long-orfs.d' ; \
fi ;
if [ -e glimmer3.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc glimmer3.cc \
| sed '\''s/glimmer3\\.o[ :]*/& glimmer3.d/g'\'' > glimmer3.d' ; \
fi ;
if [ -e anomaly.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc anomaly.cc \
| sed '\''s/anomaly\\.o[ :]*/& anomaly.d/g'\'' > anomaly.d' ; \
fi ;
make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
@@@@@@@@@@@@@@@@@@@ anomaly.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e anomaly.cc ] ; then \
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
-I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/anomaly.o anomaly.cc ; \
else \
/cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
" :/build/tigr-glimmer-3.02b/obj" anomaly.o ; \
fi ;
@@@@@@@@@@@@@@@@@@@ glimmer3.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e glimmer3.cc ] ; then \
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
-I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/glimmer3.o glimmer3.cc ; \
else \
/cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
" :/build/tigr-glimmer-3.02b/obj" glimmer3.o ; \
fi ;
glimmer3.cc: In function 'void Read_Entropy_Profiles(const char*, bool&)':
glimmer3.cc:2607:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
2607 | fgets (line, MAX_LINE, fp); // skip header line
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
@@@@@@@@@@@@@@@@@@@ long-orfs.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e long-orfs.cc ] ; then \
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
-I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/long-orfs.o long-orfs.cc ; \
else \
/cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
" :/build/tigr-glimmer-3.02b/obj" long-orfs.o ; \
fi ;
long-orfs.cc: In function 'void Read_Entropy_Profiles(const char*, bool&)':
long-orfs.cc:1317:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
1317 | fgets (line, MAX_LINE, fp); // skip header line
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
@@@@@@@@@@@@@@@@@@@ test.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e test.cc ] ; then \
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
-I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/test.o test.cc ; \
else \
/cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
" :/build/tigr-glimmer-3.02b/obj" test.o ; \
fi ;
++++++++++++++++++++ anomaly ++++++++++++++++++++++
set -e ; \
STATUS=0 ; \
if [ -z "anomaly.o" ] ; then \
cd /build/tigr-glimmer-3.02b/obj; \
cc -o /build/tigr-glimmer-3.02b/bin/anomaly -Wl,-z,relro -Wl,-z,now \
-L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib anomaly.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
\
|| STATUS=${?} ; \
if [ ${STATUS} != 0 ] ; then \
rm -f /build/tigr-glimmer-3.02b/bin/anomaly; \
exit ${STATUS}; \
fi; \
else \
cd /build/tigr-glimmer-3.02b/obj; \
g++ -o /build/tigr-glimmer-3.02b/bin/anomaly -Wl,-z,relro -Wl,-z,now \
-L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib anomaly.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
\
|| STATUS=${?} ; \
if [ ${STATUS} != 0 ] ; then \
rm -f /build/tigr-glimmer-3.02b/bin/anomaly; \
exit ${STATUS}; \
fi; \
fi ;
++++++++++++++++++++ glimmer3 ++++++++++++++++++++++
set -e ; \
STATUS=0 ; \
if [ -z "glimmer3.o" ] ; then \
cd /build/tigr-glimmer-3.02b/obj; \
cc -o /build/tigr-glimmer-3.02b/bin/glimmer3 -Wl,-z,relro -Wl,-z,now \
-L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib glimmer3.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a /build/tigr-glimmer-3.02b/lib/libGLMicm.a \
\
|| STATUS=${?} ; \
if [ ${STATUS} != 0 ] ; then \
rm -f /build/tigr-glimmer-3.02b/bin/glimmer3; \
exit ${STATUS}; \
fi; \
else \
cd /build/tigr-glimmer-3.02b/obj; \
g++ -o /build/tigr-glimmer-3.02b/bin/glimmer3 -Wl,-z,relro -Wl,-z,now \
-L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib glimmer3.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a /build/tigr-glimmer-3.02b/lib/libGLMicm.a \
\
|| STATUS=${?} ; \
if [ ${STATUS} != 0 ] ; then \
rm -f /build/tigr-glimmer-3.02b/bin/glimmer3; \
exit ${STATUS}; \
fi; \
fi ;
++++++++++++++++++++ long-orfs ++++++++++++++++++++++
set -e ; \
STATUS=0 ; \
if [ -z "long-orfs.o" ] ; then \
cd /build/tigr-glimmer-3.02b/obj; \
cc -o /build/tigr-glimmer-3.02b/bin/long-orfs -Wl,-z,relro -Wl,-z,now \
-L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib long-orfs.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
\
|| STATUS=${?} ; \
if [ ${STATUS} != 0 ] ; then \
rm -f /build/tigr-glimmer-3.02b/bin/long-orfs; \
exit ${STATUS}; \
fi; \
else \
cd /build/tigr-glimmer-3.02b/obj; \
g++ -o /build/tigr-glimmer-3.02b/bin/long-orfs -Wl,-z,relro -Wl,-z,now \
-L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib long-orfs.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
\
|| STATUS=${?} ; \
if [ ${STATUS} != 0 ] ; then \
rm -f /build/tigr-glimmer-3.02b/bin/long-orfs; \
exit ${STATUS}; \
fi; \
fi ;
++++++++++++++++++++ test ++++++++++++++++++++++
set -e ; \
STATUS=0 ; \
if [ -z "test.o" ] ; then \
cd /build/tigr-glimmer-3.02b/obj; \
cc -o /build/tigr-glimmer-3.02b/bin/test -Wl,-z,relro -Wl,-z,now \
-L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib test.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
\
|| STATUS=${?} ; \
if [ ${STATUS} != 0 ] ; then \
rm -f /build/tigr-glimmer-3.02b/bin/test; \
exit ${STATUS}; \
fi; \
else \
cd /build/tigr-glimmer-3.02b/obj; \
g++ -o /build/tigr-glimmer-3.02b/bin/test -Wl,-z,relro -Wl,-z,now \
-L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib test.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
\
|| STATUS=${?} ; \
if [ ${STATUS} != 0 ] ; then \
rm -f /build/tigr-glimmer-3.02b/bin/test; \
exit ${STATUS}; \
fi; \
fi ;
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Glimmer'
##### Making Directory /build/tigr-glimmer-3.02b/src/Util all #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Util'
make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
if [ -e window-acgt.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc window-acgt.cc \
| sed '\''s/window-acgt\\.o[ :]*/& window-acgt.d/g'\'' > window-acgt.d' ; \
fi ;
if [ -e uncovered.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc uncovered.cc \
| sed '\''s/uncovered\\.o[ :]*/& uncovered.d/g'\'' > uncovered.d' ; \
fi ;
if [ -e start-codon-distrib.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc start-codon-distrib.cc \
| sed '\''s/start-codon-distrib\\.o[ :]*/& start-codon-distrib.d/g'\'' > start-codon-distrib.d' ; \
fi ;
if [ -e multi-extract.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc multi-extract.cc \
| sed '\''s/multi-extract\\.o[ :]*/& multi-extract.d/g'\'' > multi-extract.d' ; \
fi ;
if [ -e extract.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc extract.cc \
| sed '\''s/extract\\.o[ :]*/& extract.d/g'\'' > extract.d' ; \
fi ;
if [ -e entropy-score.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc entropy-score.cc \
| sed '\''s/entropy-score\\.o[ :]*/& entropy-score.d/g'\'' > entropy-score.d' ; \
fi ;
if [ -e entropy-profile.cc ] ; then \
/bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc entropy-profile.cc \
| sed '\''s/entropy-profile\\.o[ :]*/& entropy-profile.d/g'\'' > entropy-profile.d' ; \
fi ;
make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
@@@@@@@@@@@@@@@@@@@ entropy-profile.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e entropy-profile.cc ] ; then \
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
-I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/entropy-profile.o entropy-profile.cc ; \
else \
/cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
" :/build/tigr-glimmer-3.02b/obj" entropy-profile.o ; \
fi ;
@@@@@@@@@@@@@@@@@@@ entropy-score.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e entropy-score.cc ] ; then \
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
-I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/entropy-score.o entropy-score.cc ; \
else \
/cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
" :/build/tigr-glimmer-3.02b/obj" entropy-score.o ; \
fi ;
entropy-score.cc: In function 'void Read_Entropy_Profiles(const char*, bool&)':
entropy-score.cc:327:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
327 | fgets (line, MAX_LINE, fp); // skip header line
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
@@@@@@@@@@@@@@@@@@@ extract.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e extract.cc ] ; then \
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
-I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/extract.o extract.cc ; \
else \
/cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
" :/build/tigr-glimmer-3.02b/obj" extract.o ; \
fi ;
@@@@@@@@@@@@@@@@@@@ multi-extract.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e multi-extract.cc ] ; then \
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
-I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/multi-extract.o multi-extract.cc ; \
else \
/cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
" :/build/tigr-glimmer-3.02b/obj" multi-extract.o ; \
fi ;
@@@@@@@@@@@@@@@@@@@ start-codon-distrib.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e start-codon-distrib.cc ] ; then \
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
-I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/start-codon-distrib.o start-codon-distrib.cc ; \
else \
/cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
" :/build/tigr-glimmer-3.02b/obj" start-codon-distrib.o ; \
fi ;
@@@@@@@@@@@@@@@@@@@ uncovered.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e uncovered.cc ] ; then \
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
-I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/uncovered.o uncovered.cc ; \
else \
/cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
" :/build/tigr-glimmer-3.02b/obj" uncovered.o ; \
fi ;
@@@@@@@@@@@@@@@@@@@ window-acgt.cc @@@@@@@@@@@@@@@@@@@@@
set -e ; \
if [ -e window-acgt.cc ] ; then \
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/tigr-glimmer-3.02b=. -fstack-protector-strong -Wformat -Werror=format-security -c \
-I/build/tigr-glimmer-3.02b/inc -I/../SYS/inc -I/build/tigr-glimmer-3.02b/src/Common -I/build/tigr-glimmer-3.02b/src/ICM -I/build/tigr-glimmer-3.02b/src/Glimmer -I/build/tigr-glimmer-3.02b/src/Util -I/build/tigr-glimmer-3.02b/inc -o /build/tigr-glimmer-3.02b/obj/window-acgt.o window-acgt.cc ; \
else \
/cm/cmtools/bin/links.pl /build/tigr-glimmer-3.02b/obj \
" :/build/tigr-glimmer-3.02b/obj" window-acgt.o ; \
fi ;
++++++++++++++++++++ entropy-profile ++++++++++++++++++++++
set -e ; \
STATUS=0 ; \
if [ -z "entropy-profile.o" ] ; then \
cd /build/tigr-glimmer-3.02b/obj; \
cc -o /build/tigr-glimmer-3.02b/bin/entropy-profile -Wl,-z,relro -Wl,-z,now \
-L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-profile.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
\
|| STATUS=${?} ; \
if [ ${STATUS} != 0 ] ; then \
rm -f /build/tigr-glimmer-3.02b/bin/entropy-profile; \
exit ${STATUS}; \
fi; \
else \
cd /build/tigr-glimmer-3.02b/obj; \
g++ -o /build/tigr-glimmer-3.02b/bin/entropy-profile -Wl,-z,relro -Wl,-z,now \
-L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-profile.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
\
|| STATUS=${?} ; \
if [ ${STATUS} != 0 ] ; then \
rm -f /build/tigr-glimmer-3.02b/bin/entropy-profile; \
exit ${STATUS}; \
fi; \
fi ;
++++++++++++++++++++ entropy-score ++++++++++++++++++++++
set -e ; \
STATUS=0 ; \
if [ -z "entropy-score.o" ] ; then \
cd /build/tigr-glimmer-3.02b/obj; \
cc -o /build/tigr-glimmer-3.02b/bin/entropy-score -Wl,-z,relro -Wl,-z,now \
-L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-score.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
\
|| STATUS=${?} ; \
if [ ${STATUS} != 0 ] ; then \
rm -f /build/tigr-glimmer-3.02b/bin/entropy-score; \
exit ${STATUS}; \
fi; \
else \
cd /build/tigr-glimmer-3.02b/obj; \
g++ -o /build/tigr-glimmer-3.02b/bin/entropy-score -Wl,-z,relro -Wl,-z,now \
-L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-score.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
\
|| STATUS=${?} ; \
if [ ${STATUS} != 0 ] ; then \
rm -f /build/tigr-glimmer-3.02b/bin/entropy-score; \
exit ${STATUS}; \
fi; \
fi ;
++++++++++++++++++++ extract ++++++++++++++++++++++
set -e ; \
STATUS=0 ; \
if [ -z "extract.o" ] ; then \
cd /build/tigr-glimmer-3.02b/obj; \
cc -o /build/tigr-glimmer-3.02b/bin/extract -Wl,-z,relro -Wl,-z,now \
-L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib extract.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
\
|| STATUS=${?} ; \
if [ ${STATUS} != 0 ] ; then \
rm -f /build/tigr-glimmer-3.02b/bin/extract; \
exit ${STATUS}; \
fi; \
else \
cd /build/tigr-glimmer-3.02b/obj; \
g++ -o /build/tigr-glimmer-3.02b/bin/extract -Wl,-z,relro -Wl,-z,now \
-L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib extract.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
\
|| STATUS=${?} ; \
if [ ${STATUS} != 0 ] ; then \
rm -f /build/tigr-glimmer-3.02b/bin/extract; \
exit ${STATUS}; \
fi; \
fi ;
++++++++++++++++++++ multi-extract ++++++++++++++++++++++
set -e ; \
STATUS=0 ; \
if [ -z "multi-extract.o" ] ; then \
cd /build/tigr-glimmer-3.02b/obj; \
cc -o /build/tigr-glimmer-3.02b/bin/multi-extract -Wl,-z,relro -Wl,-z,now \
-L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib multi-extract.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
\
|| STATUS=${?} ; \
if [ ${STATUS} != 0 ] ; then \
rm -f /build/tigr-glimmer-3.02b/bin/multi-extract; \
exit ${STATUS}; \
fi; \
else \
cd /build/tigr-glimmer-3.02b/obj; \
g++ -o /build/tigr-glimmer-3.02b/bin/multi-extract -Wl,-z,relro -Wl,-z,now \
-L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib multi-extract.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
\
|| STATUS=${?} ; \
if [ ${STATUS} != 0 ] ; then \
rm -f /build/tigr-glimmer-3.02b/bin/multi-extract; \
exit ${STATUS}; \
fi; \
fi ;
++++++++++++++++++++ start-codon-distrib ++++++++++++++++++++++
set -e ; \
STATUS=0 ; \
if [ -z "start-codon-distrib.o" ] ; then \
cd /build/tigr-glimmer-3.02b/obj; \
cc -o /build/tigr-glimmer-3.02b/bin/start-codon-distrib -Wl,-z,relro -Wl,-z,now \
-L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib start-codon-distrib.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
\
|| STATUS=${?} ; \
if [ ${STATUS} != 0 ] ; then \
rm -f /build/tigr-glimmer-3.02b/bin/start-codon-distrib; \
exit ${STATUS}; \
fi; \
else \
cd /build/tigr-glimmer-3.02b/obj; \
g++ -o /build/tigr-glimmer-3.02b/bin/start-codon-distrib -Wl,-z,relro -Wl,-z,now \
-L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib start-codon-distrib.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
\
|| STATUS=${?} ; \
if [ ${STATUS} != 0 ] ; then \
rm -f /build/tigr-glimmer-3.02b/bin/start-codon-distrib; \
exit ${STATUS}; \
fi; \
fi ;
++++++++++++++++++++ uncovered ++++++++++++++++++++++
set -e ; \
STATUS=0 ; \
if [ -z "uncovered.o" ] ; then \
cd /build/tigr-glimmer-3.02b/obj; \
cc -o /build/tigr-glimmer-3.02b/bin/uncovered -Wl,-z,relro -Wl,-z,now \
-L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib uncovered.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
\
|| STATUS=${?} ; \
if [ ${STATUS} != 0 ] ; then \
rm -f /build/tigr-glimmer-3.02b/bin/uncovered; \
exit ${STATUS}; \
fi; \
else \
cd /build/tigr-glimmer-3.02b/obj; \
g++ -o /build/tigr-glimmer-3.02b/bin/uncovered -Wl,-z,relro -Wl,-z,now \
-L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib uncovered.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
\
|| STATUS=${?} ; \
if [ ${STATUS} != 0 ] ; then \
rm -f /build/tigr-glimmer-3.02b/bin/uncovered; \
exit ${STATUS}; \
fi; \
fi ;
++++++++++++++++++++ window-acgt ++++++++++++++++++++++
set -e ; \
STATUS=0 ; \
if [ -z "window-acgt.o" ] ; then \
cd /build/tigr-glimmer-3.02b/obj; \
cc -o /build/tigr-glimmer-3.02b/bin/window-acgt -Wl,-z,relro -Wl,-z,now \
-L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib window-acgt.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
\
|| STATUS=${?} ; \
if [ ${STATUS} != 0 ] ; then \
rm -f /build/tigr-glimmer-3.02b/bin/window-acgt; \
exit ${STATUS}; \
fi; \
else \
cd /build/tigr-glimmer-3.02b/obj; \
g++ -o /build/tigr-glimmer-3.02b/bin/window-acgt -Wl,-z,relro -Wl,-z,now \
-L/build/tigr-glimmer-3.02b/lib -L/build/tigr-glimmer-3.02b/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib window-acgt.o /build/tigr-glimmer-3.02b/lib/libGLMcommon.a \
\
|| STATUS=${?} ; \
if [ ${STATUS} != 0 ] ; then \
rm -f /build/tigr-glimmer-3.02b/bin/window-acgt; \
exit ${STATUS}; \
fi; \
fi ;
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Util'
TGT=libs
echo "* Make Target is " all;
* Make Target is all
set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "##### Making Directory " `pwd` " " all " #####"; make all; cd ..; fi; done;
##### Making Directory /build/tigr-glimmer-3.02b/src/Common all #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Common'
make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Common'
##### Making Directory /build/tigr-glimmer-3.02b/src/ICM all #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/ICM'
make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/ICM'
##### Making Directory /build/tigr-glimmer-3.02b/src/Glimmer all #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Glimmer'
make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Glimmer'
##### Making Directory /build/tigr-glimmer-3.02b/src/Util all #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Util'
make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Util'
TGT=progs
echo "* Make Target is " all;
* Make Target is all
set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "##### Making Directory " `pwd` " " all " #####"; make all; cd ..; fi; done;
##### Making Directory /build/tigr-glimmer-3.02b/src/Common all #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Common'
make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Common'
##### Making Directory /build/tigr-glimmer-3.02b/src/ICM all #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/ICM'
make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/ICM'
##### Making Directory /build/tigr-glimmer-3.02b/src/Glimmer all #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Glimmer'
make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Glimmer'
##### Making Directory /build/tigr-glimmer-3.02b/src/Util all #####
make[3]: Entering directory '/build/tigr-glimmer-3.02b/src/Util'
make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/tigr-glimmer-3.02b/src/Util'
make[2]: Leaving directory '/build/tigr-glimmer-3.02b/src'
make[1]: Leaving directory '/build/tigr-glimmer-3.02b'
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install --destdir=debian/tigr-glimmer/
dh_install
dh_installdocs
dh_installchangelogs
dh_installexamples
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'tigr-glimmer' in '../tigr-glimmer_3.02b-6_amd64.deb'.
dpkg-deb: building package 'tigr-glimmer-dbgsym' in '../tigr-glimmer-dbgsym_3.02b-6_amd64.deb'.
dpkg-genbuildinfo --build=binary -O../tigr-glimmer_3.02b-6_amd64.buildinfo
dpkg-genchanges --build=binary -O../tigr-glimmer_3.02b-6_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/4064230 and its subdirectories
I: Current time: Sat Jun 1 14:40:51 -12 2024
I: pbuilder-time-stamp: 1717296051