I: pbuilder: network access will be disabled during build
I: Current time: Mon Jun 10 20:57:06 -12 2024
I: pbuilder-time-stamp: 1718096226
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [garlic_1.6-3.dsc]
I: copying [./garlic_1.6.orig.tar.gz]
I: copying [./garlic_1.6-3.debian.tar.xz]
I: Extracting source
gpgv: Signature made Wed Jan 2 01:48:19 2019 -12
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./garlic_1.6-3.dsc: no acceptable signature found
dpkg-source: info: extracting garlic in garlic-1.6
dpkg-source: info: unpacking garlic_1.6.orig.tar.gz
dpkg-source: info: unpacking garlic_1.6-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hardening.patch
I: using fakeroot in build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/30708/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='arm64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8'
DISTRIBUTION='bookworm'
HOME='/var/lib/jenkins'
HOST_ARCH='arm64'
IFS='
'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='30708'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7p8h1A6E/pbuilderrc_bQ6O --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7p8h1A6E/b1 --logfile b1/build.log garlic_1.6-3.dsc'
SUDO_GID='117'
SUDO_UID='110'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
USERNAME='root'
_='/usr/bin/systemd-run'
http_proxy='http://192.168.101.16:3128'
I: uname -a
Linux codethink9-arm64 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Jun 10 04:48 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/30708/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper (>= 11~), libx11-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19616 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however:
Package debhelper is not installed.
pbuilder-satisfydepends-dummy depends on libx11-dev; however:
Package libx11-dev is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libpthread-stubs0-dev{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} x11proto-dev{a} xorg-sgml-doctools{a} xtrans-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget
0 packages upgraded, 44 newly installed, 0 to remove and 0 not upgraded.
Need to get 21.5 MB of archives. After unpacking 84.1 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 2 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB]
Get: 3 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB]
Get: 4 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB]
Get: 5 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB]
Get: 6 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB]
Get: 7 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB]
Get: 8 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB]
Get: 9 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB]
Get: 10 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB]
Get: 11 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB]
Get: 12 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB]
Get: 13 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get: 15 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB]
Get: 16 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 17 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB]
Get: 18 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 19 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 20 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B]
Get: 21 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 22 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 23 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB]
Get: 24 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB]
Get: 25 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB]
Get: 26 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB]
Get: 27 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB]
Get: 28 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 29 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 30 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB]
Get: 31 http://deb.debian.org/debian bookworm/main arm64 libbsd0 arm64 0.11.7-2 [115 kB]
Get: 32 http://deb.debian.org/debian bookworm/main arm64 libpthread-stubs0-dev arm64 0.4-1 [5336 B]
Get: 33 http://deb.debian.org/debian bookworm/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB]
Get: 34 http://deb.debian.org/debian bookworm/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB]
Get: 35 http://deb.debian.org/debian bookworm/main arm64 libxcb1 arm64 1.15-1 [143 kB]
Get: 36 http://deb.debian.org/debian bookworm/main arm64 libx11-data all 2:1.8.4-2 [292 kB]
Get: 37 http://deb.debian.org/debian bookworm/main arm64 libx11-6 arm64 2:1.8.4-2 [736 kB]
Get: 38 http://deb.debian.org/debian bookworm/main arm64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB]
Get: 39 http://deb.debian.org/debian bookworm/main arm64 x11proto-dev all 2022.1-1 [599 kB]
Get: 40 http://deb.debian.org/debian bookworm/main arm64 libxau-dev arm64 1:1.0.9-1 [23.2 kB]
Get: 41 http://deb.debian.org/debian bookworm/main arm64 libxdmcp-dev arm64 1:1.1.2-3 [41.2 kB]
Get: 42 http://deb.debian.org/debian bookworm/main arm64 xtrans-dev all 1.4.0-1 [98.7 kB]
Get: 43 http://deb.debian.org/debian bookworm/main arm64 libxcb1-dev arm64 1.15-1 [182 kB]
Get: 44 http://deb.debian.org/debian bookworm/main arm64 libx11-dev arm64 2:1.8.4-2 [817 kB]
Fetched 21.5 MB in 1s (38.9 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sensible-utils.
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(Reading database ... 19616 files and directories currently installed.)
Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ...
Unpacking sensible-utils (0.0.17+nmu1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_arm64.deb ...
Unpacking libmagic-mgc (1:5.44-3) ...
Selecting previously unselected package libmagic1:arm64.
Preparing to unpack .../02-libmagic1_1%3a5.44-3_arm64.deb ...
Unpacking libmagic1:arm64 (1:5.44-3) ...
Selecting previously unselected package file.
Preparing to unpack .../03-file_1%3a5.44-3_arm64.deb ...
Unpacking file (1:5.44-3) ...
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Preparing to unpack .../04-gettext-base_0.21-12_arm64.deb ...
Unpacking gettext-base (0.21-12) ...
Selecting previously unselected package libuchardet0:arm64.
Preparing to unpack .../05-libuchardet0_0.0.7-1_arm64.deb ...
Unpacking libuchardet0:arm64 (0.0.7-1) ...
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Preparing to unpack .../06-groff-base_1.22.4-10_arm64.deb ...
Unpacking groff-base (1.22.4-10) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_arm64.deb ...
Unpacking bsdextrautils (2.38.1-5+b1) ...
Selecting previously unselected package libpipeline1:arm64.
Preparing to unpack .../08-libpipeline1_1.5.7-1_arm64.deb ...
Unpacking libpipeline1:arm64 (1.5.7-1) ...
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Preparing to unpack .../09-man-db_2.11.2-2_arm64.deb ...
Unpacking man-db (2.11.2-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../10-m4_1.4.19-3_arm64.deb ...
Unpacking m4 (1.4.19-3) ...
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Preparing to unpack .../11-autoconf_2.71-3_all.deb ...
Unpacking autoconf (2.71-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
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Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
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Preparing to unpack .../14-autopoint_0.21-12_all.deb ...
Unpacking autopoint (0.21-12) ...
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Unpacking libdebhelper-perl (13.11.4) ...
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Preparing to unpack .../16-libtool_2.4.7-5_all.deb ...
Unpacking libtool (2.4.7-5) ...
Selecting previously unselected package dh-autoreconf.
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Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
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Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ...
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Unpacking dh-strip-nondeterminism (1.13.1-1) ...
Selecting previously unselected package libelf1:arm64.
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Unpacking libelf1:arm64 (0.188-2.1) ...
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Unpacking libicu72:arm64 (72.1-3) ...
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Unpacking libxml2:arm64 (2.9.14+dfsg-1.2) ...
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Unpacking gettext (0.21-12) ...
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Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ...
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Unpacking debhelper (13.11.4) ...
Selecting previously unselected package libbsd0:arm64.
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Unpacking libbsd0:arm64 (0.11.7-2) ...
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Unpacking libpthread-stubs0-dev:arm64 (0.4-1) ...
Selecting previously unselected package libxau6:arm64.
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Unpacking libxau6:arm64 (1:1.0.9-1) ...
Selecting previously unselected package libxdmcp6:arm64.
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Unpacking libxdmcp6:arm64 (1:1.1.2-3) ...
Selecting previously unselected package libxcb1:arm64.
Preparing to unpack .../34-libxcb1_1.15-1_arm64.deb ...
Unpacking libxcb1:arm64 (1.15-1) ...
Selecting previously unselected package libx11-data.
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Unpacking libx11-data (2:1.8.4-2) ...
Selecting previously unselected package libx11-6:arm64.
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Unpacking libx11-6:arm64 (2:1.8.4-2) ...
Selecting previously unselected package xorg-sgml-doctools.
Preparing to unpack .../37-xorg-sgml-doctools_1%3a1.11-1.1_all.deb ...
Unpacking xorg-sgml-doctools (1:1.11-1.1) ...
Selecting previously unselected package x11proto-dev.
Preparing to unpack .../38-x11proto-dev_2022.1-1_all.deb ...
Unpacking x11proto-dev (2022.1-1) ...
Selecting previously unselected package libxau-dev:arm64.
Preparing to unpack .../39-libxau-dev_1%3a1.0.9-1_arm64.deb ...
Unpacking libxau-dev:arm64 (1:1.0.9-1) ...
Selecting previously unselected package libxdmcp-dev:arm64.
Preparing to unpack .../40-libxdmcp-dev_1%3a1.1.2-3_arm64.deb ...
Unpacking libxdmcp-dev:arm64 (1:1.1.2-3) ...
Selecting previously unselected package xtrans-dev.
Preparing to unpack .../41-xtrans-dev_1.4.0-1_all.deb ...
Unpacking xtrans-dev (1.4.0-1) ...
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Unpacking libxcb1-dev:arm64 (1.15-1) ...
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Preparing to unpack .../43-libx11-dev_2%3a1.8.4-2_arm64.deb ...
Unpacking libx11-dev:arm64 (2:1.8.4-2) ...
Setting up libpipeline1:arm64 (1.5.7-1) ...
Setting up libxau6:arm64 (1:1.0.9-1) ...
Setting up libicu72:arm64 (72.1-3) ...
Setting up bsdextrautils (2.38.1-5+b1) ...
Setting up libmagic-mgc (1:5.44-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.11.4) ...
Setting up libmagic1:arm64 (1:5.44-3) ...
Setting up gettext-base (0.21-12) ...
Setting up m4 (1.4.19-3) ...
Setting up file (1:5.44-3) ...
Setting up libpthread-stubs0-dev:arm64 (0.4-1) ...
Setting up xtrans-dev (1.4.0-1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libx11-data (2:1.8.4-2) ...
Setting up autopoint (0.21-12) ...
Setting up autoconf (2.71-3) ...
Setting up sensible-utils (0.0.17+nmu1) ...
Setting up libuchardet0:arm64 (0.0.7-1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up xorg-sgml-doctools (1:1.11-1.1) ...
Setting up libbsd0:arm64 (0.11.7-2) ...
Setting up libelf1:arm64 (0.188-2.1) ...
Setting up libxml2:arm64 (2.9.14+dfsg-1.2) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up x11proto-dev (2022.1-1) ...
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up libxdmcp6:arm64 (1:1.1.2-3) ...
Setting up libxcb1:arm64 (1.15-1) ...
Setting up gettext (0.21-12) ...
Setting up libxau-dev:arm64 (1:1.0.9-1) ...
Setting up libtool (2.4.7-5) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libxdmcp-dev:arm64 (1:1.1.2-3) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.22.4-10) ...
Setting up libx11-6:arm64 (2:1.8.4-2) ...
Setting up libxcb1-dev:arm64 (1.15-1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libx11-dev:arm64 (2:1.8.4-2) ...
Setting up man-db (2.11.2-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up debhelper (13.11.4) ...
Processing triggers for libc-bin (2.36-9) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
fakeroot is already the newest version (1.31-1.2).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: Running cd /build/garlic-1.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../garlic_1.6-3_source.changes
dpkg-buildpackage: info: source package garlic
dpkg-buildpackage: info: source version 1.6-3
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
fakeroot debian/rules clean
dh clean
dh_auto_clean
debian/rules override_dh_clean
make[1]: Entering directory '/build/garlic-1.6'
dh_clean *.o garlicrc garlic
make[1]: Leaving directory '/build/garlic-1.6'
debian/rules build
dh build
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
debian/rules override_dh_auto_build
make[1]: Entering directory '/build/garlic-1.6'
dh_auto_build -- CCOPT="-g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security"
make -j8 "INSTALL=install --strip-program=true" "CCOPT=-g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security"
make[2]: Entering directory '/build/garlic-1.6'
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security garlic.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security print_usage.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security print_help.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security print_version.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security register.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security alloc_gui.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security alloc_config.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security alloc_mol_complex.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security free_memory.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security display_init.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security disp_color_cap.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security color_shifts.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security calc_params.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security errmsg.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security warnmsg.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security openfile_r.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security read_config.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security open_config_file.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_int.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security ex2ints.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_double.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security ex2doubles.c
openfile_r.c: In function 'OpenFileForReading_':
openfile_r.c:123:31: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
123 | path_nameA[n] = '\0';
| ~~~~~~~~~~~~~~^~~~~~
openfile_r.c:52:17: note: at offset [-2147483648, -1] into destination object 'path_nameA' of size 1024
52 | char path_nameA[STRINGSIZE];
| ^~~~~~~~~~
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_phrase.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_index.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security ex_rot_steps.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security ex_trans_steps.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security ex_slab_steps.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security ex_fading_steps.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_args.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security parse_options.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security parse_color.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security load_font.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security prepare_cursor.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security print_config.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security create_windows.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security make_pixmap.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security make_pixmap2.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security rgbs_from_xcolor.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security pixel_from_rgbs.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security size_hints.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security wmhints.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_events.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security hide_control.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security load_complex.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security read_file.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security fileformat.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security is_pdb.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security read_pdb.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security init_header.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security pdb_atom.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_field.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security copypur.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security realloc_pdb.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security headerline.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security geomcenter.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security init_slab.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security init_fading.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security flip_vector.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security translate_complex.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extent.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security stereo_data.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security strong_bonds.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security pseudo_bonds.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security check_dist.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security add_bond.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security event_loop.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security alloc_nearest.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security init_nearest.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security main_refresh.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security key_press.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security rotation_angle.c
alloc_nearest.c: In function 'AllocateNearest_':
alloc_nearest.c:70:39: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' {aka 'long unsigned int'} [-Wformat=]
70 | fprintf (stderr, "A total of %d bytes required.\n", mem_size);
| ~^ ~~~~~~~~
| | |
| int size_t {aka long unsigned int}
| %ld
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security rotate.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security translation_shift.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security translate.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security slab_shift.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security move_back_slab.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security move_front_slab.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security fading_shift.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security move_back_fading.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security move_front_fading.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security key_release.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security refresh_pixmap.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security slab.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security no_slab.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security planar_slab.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security sphere_slab.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security half_sphere_slab.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security cylin_slab.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security half_cylin_slab.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security project_atoms.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security fading.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security prepare_color.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security no_fading.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security planar_fading.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security sphere_fading.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security half_sphere_fading.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security cylin_fading.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security half_cylin_fading.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security reset_pos_flag.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security atoms_style1.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security atoms_style2.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security atoms_style3.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security atoms_style4.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security atoms_style5.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security atoms_style6.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security atoms_style7.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bonds_style1.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bond_style1_quad1.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bond_style1_quad2.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bond_style1_quad3.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bond_style1_quad4.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bonds_style2.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bond_style2_quad1.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bond_style2_quad2.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bond_style2_quad3.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bond_style2_quad4.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bonds_style3.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security interpolate_color.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bond_style3_quad1.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bond_style3_quad2.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bond_style3_quad3.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bond_style3_quad4.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bonds_style4.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security add_two_colors.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bond_style4_quad1.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bond_style4_quad2.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bond_style4_quad3.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bond_style4_quad4.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bonds_style5.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security add_three_colors.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bond_style5_quad1.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bond_style5_quad2.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bond_style5_quad3.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bond_style5_quad4.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_system.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security motion_notify.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security assign_hyphob.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security control_refresh.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security print_cursor_names.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security main_resize.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security init_runtime.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security add_char.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security input_refresh.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security eat_left_char.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security eat_right_char.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security execute_command1.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security execute_command2.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security truncate_comm.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security create_log_file.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security load.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security catch.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security discard.c
load.c: In function 'Load_':
load.c:122:60: warning: '%s' directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=]
122 | sprintf (runtimeSP->messageA, "Unable to open file %s!", tokenA);
| ^~ ~~~~~~
load.c:122:9: note: 'sprintf' output between 22 and 1045 bytes into a destination of size 1024
122 | sprintf (runtimeSP->messageA, "Unable to open file %s!", tokenA);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security full_select.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security include.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security chains.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security residue_ranges.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_token.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_serials.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security residue_names.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security atom_names.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security exclude.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security skip_keyword.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security apply_selection.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security show.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security hide.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security color_schemes.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security init_colors.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security color.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security special_select.c
color.c: In function 'Color_':
color.c:106:32: warning: '%s' directive writing up to 1023 bytes into a region of size 1011 [-Wformat-overflow=]
106 | "Color scheme %s is not available!", tokenA);
| ^~ ~~~~~~
color.c:105:9: note: 'sprintf' output between 32 and 1055 bytes into a destination of size 1024
105 | sprintf (runtimeSP->messageA,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
106 | "Color scheme %s is not available!", tokenA);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_hetero.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_element.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_atoms.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security quick_select.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security replace_command.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security atoms.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bonds.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security execute_script.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security comm_rotate.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security comm_translate.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security comm_slab.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security comm_fading.c
execute_script.c: In function 'ExecuteScript_':
execute_script.c:101:48: warning: '%s' directive writing up to 1023 bytes into a region of size 1002 [-Wformat-overflow=]
101 | "Unable to open script %s!", tokenA);
| ^~ ~~~~~~
execute_script.c:100:17: note: 'sprintf' output between 24 and 1047 bytes into a destination of size 1024
100 | sprintf (runtimeSP->messageA,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
101 | "Unable to open script %s!", tokenA);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security log.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security prepare_backbone.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security background.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security text_background.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security text_foreground.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security change_slab.c
log.c: In function 'Log_':
log.c:130:64: warning: '%s' directive writing up to 1023 bytes into a region of size 1000 [-Wformat-overflow=]
130 | sprintf (runtimeSP->messageA, "Unable to open log file %s!", tokenA);
| ^~ ~~~~~~
log.c:130:9: note: 'sprintf' output between 26 and 1049 bytes into a destination of size 1024
130 | sprintf (runtimeSP->messageA, "Unable to open log file %s!", tokenA);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security change_fading.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security full_colors.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security is_old.c
prepare_backbone.c: In function 'PrepareBackbone_':
prepare_backbone.c:103:39: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' {aka 'long unsigned int'} [-Wformat=]
103 | fprintf (stderr, "A total of %d bytes required.\n", mem_size);
| ~^ ~~~~~~~~
| | |
| int size_t {aka long unsigned int}
| %ld
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security font.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security cpk.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security zebra.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security chain.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security color_hyphob.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security mix_colors.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security comm_backbone.c
font.c: In function 'Font_':
font.c:87:45: warning: '%s' directive writing up to 1023 bytes into a region of size 1019 [-Wformat-overflow=]
87 | sprintf (runtimeSP->messageA, "Font %s is not available!", tokenA);
| ^~ ~~~~~~
font.c:87:9: note: 'sprintf' output between 24 and 1047 bytes into a destination of size 1024
87 | sprintf (runtimeSP->messageA, "Font %s is not available!", tokenA);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
comm_backbone.c: In function 'CommandBackbone_':
comm_backbone.c:106:52: warning: '%s' directive writing up to 1023 bytes into a region of size 1000 [-Wformat-overflow=]
106 | "Backbone drawing style \"%s\" not available!",
| ^~
107 | tokenA);
| ~~~~~~
comm_backbone.c:105:17: note: 'sprintf' output between 41 and 1064 bytes into a destination of size 1024
105 | sprintf (runtimeSP->messageA,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
106 | "Backbone drawing style \"%s\" not available!",
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
107 | tokenA);
| ~~~~~~~
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security hide_no_refresh.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security show_no_refresh.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security backbone.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security hybonds.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security generate_hybonds.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security hybond_style.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security show_backbone.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security hide_backbone.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security pdb_id.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security generate_plane.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security stereo.c
hybonds.c: In function 'HydrogenBonds_':
hybonds.c:94:57: warning: '%s' directive writing up to 1023 bytes into a region of size 995 [-Wformat-overflow=]
94 | "Hydrogen bond drawing style \"%s\" not available!",
| ^~
95 | tokenA);
| ~~~~~~
hybonds.c:93:17: note: 'sprintf' output between 46 and 1069 bytes into a destination of size 1024
93 | sprintf (runtimeSP->messageA,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
94 | "Hydrogen bond drawing style \"%s\" not available!",
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
95 | tokenA);
| ~~~~~~~
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security mono.c
stereo.c: In function 'CommandStereo_':
stereo.c:79:35: warning: '%s' directive writing up to 1023 bytes into a region of size 1016 [-Wformat-overflow=]
79 | "Keyword %s not recognized!",
| ^~
80 | tokenA);
| ~~~~~~
stereo.c:78:17: note: 'sprintf' output between 25 and 1048 bytes into a destination of size 1024
78 | sprintf (runtimeSP->messageA,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | "Keyword %s not recognized!",
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | tokenA);
| ~~~~~~~
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security position.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security copy_doubles.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security title.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security free_runtime.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_titles.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security foreground.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security prepare_oc.c
title.c: In function 'Title_':
title.c:205:35: warning: '%s' directive writing up to 1023 bytes into a region of size 1016 [-Wformat-overflow=]
205 | "Keyword %s not recognized!", tokenA);
| ^~ ~~~~~~
title.c:204:17: note: 'sprintf' output between 25 and 1048 bytes into a destination of size 1024
204 | sprintf (runtimeSP->messageA,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
205 | "Keyword %s not recognized!", tokenA);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_complement.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security labels.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_labels.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security assign_radii.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security spacefill.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security spacefill_color.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_balls.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security center.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security save.c
labels.c: In function 'Labels_':
labels.c:81:35: warning: '%s' directive writing up to 1023 bytes into a region of size 1016 [-Wformat-overflow=]
81 | "Keyword %s not recognized!",
| ^~
82 | tokenA);
| ~~~~~~
labels.c:80:17: note: 'sprintf' output between 25 and 1048 bytes into a destination of size 1024
80 | sprintf (runtimeSP->messageA,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | "Keyword %s not recognized!",
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
82 | tokenA);
| ~~~~~~~
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security write_line.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security big_spheres.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security tag.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_tags.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security tag_position.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security button_press.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security control_click.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security identify_button.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security init_buttons.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security write_hints.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_sequence.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security count_residues.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security sequence.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security parse_sequence.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security sequence_from.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security load_sequence.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_sequence.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security compare_sequences.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security dihedral_angles.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_ncaco.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security phi_from_cncac.c
load_sequence.c: In function 'LoadSequence_':
load_sequence.c:139:53: warning: '%s' directive writing between 4 and 1023 bytes into a region of size 1006 [-Wformat-overflow=]
139 | "Bad residue name: %s", tokenA);
| ^~ ~~~~~~
load_sequence.c:138:25: note: 'sprintf' output between 23 and 1042 bytes into a destination of size 1024
138 | sprintf (runtimeSP->messageA,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
139 | "Bad residue name: %s", tokenA);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security psi_from_ncaco.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security vector_product.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security absolute_value.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security scalar_product.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security omega_from_cacnca.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_cis_trans.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security ramachandran.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_ramachandran.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security rama_frame.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security rama_mouse.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security read_fasta.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security save_sequence.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security wheel.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security wheel_top_view.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security wheel_bottom_view.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security hydrophobicity.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security weight_colors.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security angle.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security radius.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_sphere.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security disulfide_bonds.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security venn.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_venn.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security spacefill2.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security sp2_color.c
draw_venn.c: In function 'DrawVenn_':
draw_venn.c:481:28: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' {aka 'long unsigned int'} [-Wformat=]
481 | sprintf (stringA, "TOTAL: %d", residuesN);
| ~^ ~~~~~~~~~
| | |
| int size_t {aka long unsigned int}
| %ld
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security save_seq_w_numbers.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security ssb.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_alternate.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_model.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security color_model.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security window.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security plot.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_plots.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security weighted_hydrophobicity.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security average_hydrophobicity.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security init_hyphob.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security plot_mouse.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security project_planes.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_planes.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security plane_extent.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security rotate_plane.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security translate_plane.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security comm_move.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security plane.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_above.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_below.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security big2.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security scale.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security pattern.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security dock.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security align_normal.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security align_complexes.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security docking_window.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security docking_resize.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security docking_refresh.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security docking_project.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security list_exposed_polar.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security is_polar.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security representative_atoms.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security exclude_distant.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_bottom.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_top.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security copy_sequence.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security compare.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_comparison.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security neighborhood.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_balls2.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security comparison_mouse.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security structure.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security parse_sec_structure.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security copy_sec_structure.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security load_sec_structure.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security save_sec_structure.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security alloc_sec_structure.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security sec_structure_from.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security create.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security open_template_file.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security read_template_file.c
open_template_file.c: In function 'OpenTemplateFile_':
open_template_file.c:68:1: warning: 'strncat' specified bound 13 equals source length [-Wstringop-overflow=]
68 | strncat (template_file_nameA, "/residues.pdb", 13);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
open_template_file.c:79:1: warning: 'strncat' specified bound 20 equals source length [-Wstringop-overflow=]
79 | strncat (template_file_nameA, "/garlic/residues.pdb", 20);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security ex_template_residues.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security count_template_res.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security create_structure.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security required_atoms.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security copy_template_atoms.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security fix_chain.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security reset_phi.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_hncac.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security phi_from_hncac.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security rotate_atom.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security parallel_part.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security reset_psi.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security build_chain.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_ncac.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security translate_range.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security rotate_range.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security apply_structure.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security generate_phi_psi.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_nca.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_c.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security replace.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_n.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security refresh_backbone.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security edit.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_edit_symbol.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_squid.c
replace.c: In function 'Replace_':
replace.c:204:67: warning: format '%d' expects argument of type 'int', but argument 4 has type 'size_t' {aka 'long unsigned int'} [-Wformat=]
204 | "%d resid. selected but sequence buffer contains %d!",
| ~^
| |
| int
| %ld
205 | selected_residuesN, runtimeSP->residuesN);
| ~~~~~~~~~~~~~~~~~~~~
| |
| size_t {aka long unsigned int}
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_seahorse.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security are_atoms_bound.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bond_partners.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security edit_phi.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security edit_psi.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_cac.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security small_ramachandran.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security edit_omega.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security small_omega.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_h.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_o.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security psi_from_ncacn.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security is_standard.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_four_atoms.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security chi1_from_ncacbcg.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security chi1_from_ncacbsg.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security chi1_from_ncacbcg1.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security chi1_from_ncacbog.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security chi1_from_ncacbog1.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security chi2_from_cacbcgcd.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security chi2_from_cacbcgod1.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security chi2_from_cacbcgnd1.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security chi2_from_cacbcg1cd.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security chi2_from_cacbcgcd1.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security chi2_from_cacbcgsd.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security chi3_from_cbcgcdne.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security chi3_from_cbcgcdoe1.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security chi3_from_cbcgcdce.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security chi3_from_cbcgsdce.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security chi4_from_cgcdnecz.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security chi4_from_cgcdcenz.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security chi5_from_cdnecznh1.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security is_part_of_ring.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security edit_bond.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security edit_chi2.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_cacb.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security edit_chi1.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_cbxg.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security resize_complex.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security membrane.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security inform_user.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security alpha_membrane.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_ca.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_vector.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security alpha_membrane_center.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security init_membrane.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security alpha_normal.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security project_membranes.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_membranes.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security rotate_membrane.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security translate_membrane.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_triplet.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security set.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security set_phi.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security set_psi.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security set_omega.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security set_chi1.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security set_chi2.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security set_chi3.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_cgxd.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security set_chi4.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_cdxe.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security set_chi5.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_necz.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security pick_bond.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security nice_bonds.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security covalent.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security covalent2.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security half_nice_bond.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security probe.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security small_atoms.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security small_atoms2.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_sticks.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security half_stick.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security command_refresh.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security acceptor_dipole.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security donor_dipole.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security sticks.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security balls.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security blur.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security blur_main_window.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security group.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security beta_membrane.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_cg.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_tm.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security parse_pattern.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_pattern.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security hyphob_function1.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security hyphob_function2.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security hyphob_function3.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security hyphob_function4.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security hyphob_function5.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security hyphob_function6.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security hyphob_function7.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security color_size.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security command_dump.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security is_aromatic.c
command_dump.c: In function 'Dump_':
command_dump.c:195:57: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' {aka 'long unsigned int'} [-Wformat=]
195 | if (output_fileF) fprintf (outfileP, "%8d", residueI);
| ~~^ ~~~~~~~~
| | |
| int size_t {aka long unsigned int}
| %8ld
command_dump.c:196:42: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' {aka 'long unsigned int'} [-Wformat=]
196 | else fprintf (stdout, "%8d", residueI);
| ~~^ ~~~~~~~~
| | |
| int size_t {aka long unsigned int}
| %8ld
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_2c3.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_2cz3.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_2nz3.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_3c4.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_3cz4.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_3nz4.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_3c5.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_3cz5.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_3nz5.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_3p5.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_4c5.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_4cz5.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_4nz5.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_3c6.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_3cz6.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_3nz6.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_4c6.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_4cz6.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_4nz6.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_4p6.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_5c6.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_5cz6.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_5nz6.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_4c7.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_4cz7.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_4nz7.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_5c7.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_5cz7.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_5nz7.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_5p7.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_6p7.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_4c9.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_4cz9.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_4nz9.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_5c9.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_5cz9.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_5nz9.c
gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security color_weighted.c
gcc -o garlic -L/usr/X11R6/lib garlic.o print_usage.o print_help.o print_version.o register.o alloc_gui.o alloc_config.o alloc_mol_complex.o free_memory.o display_init.o disp_color_cap.o color_shifts.o calc_params.o errmsg.o warnmsg.o openfile_r.o read_config.o open_config_file.o extract_int.o ex2ints.o extract_double.o ex2doubles.o extract_phrase.o extract_index.o ex_rot_steps.o ex_trans_steps.o ex_slab_steps.o ex_fading_steps.o extract_args.o parse_options.o parse_color.o load_font.o prepare_cursor.o print_config.o create_windows.o make_pixmap.o make_pixmap2.o rgbs_from_xcolor.o pixel_from_rgbs.o size_hints.o wmhints.o select_events.o hide_control.o load_complex.o read_file.o fileformat.o is_pdb.o read_pdb.o init_header.o pdb_atom.o extract_field.o copypur.o realloc_pdb.o headerline.o geomcenter.o init_slab.o init_fading.o flip_vector.o translate_complex.o extent.o stereo_data.o strong_bonds.o pseudo_bonds.o check_dist.o add_bond.o event_loop.o alloc_nearest.o init_nearest.o main_refresh.o key_press.o rotation_angle.o rotate.o translation_shift.o translate.o slab_shift.o move_back_slab.o move_front_slab.o fading_shift.o move_back_fading.o move_front_fading.o key_release.o refresh_pixmap.o slab.o no_slab.o planar_slab.o sphere_slab.o half_sphere_slab.o cylin_slab.o half_cylin_slab.o project_atoms.o fading.o prepare_color.o no_fading.o planar_fading.o sphere_fading.o half_sphere_fading.o cylin_fading.o half_cylin_fading.o reset_pos_flag.o atoms_style1.o atoms_style2.o atoms_style3.o atoms_style4.o atoms_style5.o atoms_style6.o atoms_style7.o bonds_style1.o bond_style1_quad1.o bond_style1_quad2.o bond_style1_quad3.o bond_style1_quad4.o bonds_style2.o bond_style2_quad1.o bond_style2_quad2.o bond_style2_quad3.o bond_style2_quad4.o bonds_style3.o interpolate_color.o bond_style3_quad1.o bond_style3_quad2.o bond_style3_quad3.o bond_style3_quad4.o bonds_style4.o add_two_colors.o bond_style4_quad1.o bond_style4_quad2.o bond_style4_quad3.o bond_style4_quad4.o bonds_style5.o add_three_colors.o bond_style5_quad1.o bond_style5_quad2.o bond_style5_quad3.o bond_style5_quad4.o draw_system.o motion_notify.o assign_hyphob.o control_refresh.o print_cursor_names.o main_resize.o init_runtime.o add_char.o input_refresh.o eat_left_char.o eat_right_char.o execute_command1.o execute_command2.o truncate_comm.o create_log_file.o load.o catch.o discard.o select.o full_select.o include.o chains.o residue_ranges.o extract_token.o extract_serials.o residue_names.o atom_names.o exclude.o skip_keyword.o apply_selection.o show.o hide.o color_schemes.o init_colors.o color.o special_select.o select_hetero.o select_element.o select_atoms.o quick_select.o replace_command.o atoms.o bonds.o execute_script.o comm_rotate.o comm_translate.o comm_slab.o comm_fading.o log.o prepare_backbone.o background.o text_background.o text_foreground.o change_slab.o change_fading.o full_colors.o is_old.o font.o cpk.o zebra.o chain.o color_hyphob.o mix_colors.o comm_backbone.o hide_no_refresh.o show_no_refresh.o backbone.o hybonds.o generate_hybonds.o hybond_style.o show_backbone.o hide_backbone.o pdb_id.o generate_plane.o stereo.o mono.o position.o copy_doubles.o title.o free_runtime.o draw_titles.o foreground.o prepare_oc.o select_complement.o labels.o draw_labels.o assign_radii.o spacefill.o spacefill_color.o draw_balls.o center.o save.o write_line.o big_spheres.o tag.o draw_tags.o tag_position.o button_press.o control_click.o identify_button.o init_buttons.o write_hints.o extract_sequence.o count_residues.o sequence.o parse_sequence.o sequence_from.o load_sequence.o select_sequence.o compare_sequences.o dihedral_angles.o extract_ncaco.o phi_from_cncac.o psi_from_ncaco.o vector_product.o absolute_value.o scalar_product.o omega_from_cacnca.o select_cis_trans.o ramachandran.o draw_ramachandran.o rama_frame.o rama_mouse.o read_fasta.o save_sequence.o wheel.o wheel_top_view.o wheel_bottom_view.o hydrophobicity.o weight_colors.o angle.o radius.o select_sphere.o disulfide_bonds.o venn.o draw_venn.o spacefill2.o sp2_color.o save_seq_w_numbers.o ssb.o select_alternate.o select_model.o color_model.o window.o plot.o draw_plots.o weighted_hydrophobicity.o average_hydrophobicity.o init_hyphob.o plot_mouse.o project_planes.o draw_planes.o plane_extent.o rotate_plane.o translate_plane.o comm_move.o plane.o select_above.o select_below.o big2.o scale.o pattern.o dock.o align_normal.o align_complexes.o docking_window.o docking_resize.o docking_refresh.o docking_project.o list_exposed_polar.o is_polar.o representative_atoms.o exclude_distant.o draw_bottom.o draw_top.o copy_sequence.o compare.o draw_comparison.o neighborhood.o draw_balls2.o comparison_mouse.o structure.o parse_sec_structure.o copy_sec_structure.o load_sec_structure.o save_sec_structure.o alloc_sec_structure.o sec_structure_from.o create.o open_template_file.o read_template_file.o ex_template_residues.o count_template_res.o create_structure.o required_atoms.o copy_template_atoms.o fix_chain.o reset_phi.o extract_hncac.o phi_from_hncac.o rotate_atom.o parallel_part.o reset_psi.o build_chain.o extract_ncac.o translate_range.o rotate_range.o apply_structure.o generate_phi_psi.o extract_nca.o extract_c.o replace.o extract_n.o refresh_backbone.o edit.o draw_edit_symbol.o draw_squid.o draw_seahorse.o are_atoms_bound.o bond_partners.o edit_phi.o edit_psi.o extract_cac.o small_ramachandran.o edit_omega.o small_omega.o extract_h.o extract_o.o psi_from_ncacn.o is_standard.o extract_four_atoms.o chi1_from_ncacbcg.o chi1_from_ncacbsg.o chi1_from_ncacbcg1.o chi1_from_ncacbog.o chi1_from_ncacbog1.o chi2_from_cacbcgcd.o chi2_from_cacbcgod1.o chi2_from_cacbcgnd1.o chi2_from_cacbcg1cd.o chi2_from_cacbcgcd1.o chi2_from_cacbcgsd.o chi3_from_cbcgcdne.o chi3_from_cbcgcdoe1.o chi3_from_cbcgcdce.o chi3_from_cbcgsdce.o chi4_from_cgcdnecz.o chi4_from_cgcdcenz.o chi5_from_cdnecznh1.o is_part_of_ring.o edit_bond.o edit_chi2.o extract_cacb.o edit_chi1.o extract_cbxg.o resize_complex.o membrane.o inform_user.o alpha_membrane.o extract_ca.o extract_vector.o alpha_membrane_center.o init_membrane.o alpha_normal.o project_membranes.o draw_membranes.o rotate_membrane.o translate_membrane.o select_triplet.o set.o set_phi.o set_psi.o set_omega.o set_chi1.o set_chi2.o set_chi3.o extract_cgxd.o set_chi4.o extract_cdxe.o set_chi5.o extract_necz.o pick_bond.o nice_bonds.o covalent.o covalent2.o half_nice_bond.o probe.o small_atoms.o small_atoms2.o draw_sticks.o half_stick.o command_refresh.o acceptor_dipole.o donor_dipole.o sticks.o balls.o blur.o blur_main_window.o group.o beta_membrane.o extract_cg.o select_tm.o parse_pattern.o select_pattern.o hyphob_function1.o hyphob_function2.o hyphob_function3.o hyphob_function4.o hyphob_function5.o hyphob_function6.o hyphob_function7.o color_size.o command_dump.o is_aromatic.o select_2c3.o select_2cz3.o select_2nz3.o select_3c4.o select_3cz4.o select_3nz4.o select_3c5.o select_3cz5.o select_3nz5.o select_3p5.o select_4c5.o select_4cz5.o select_4nz5.o select_3c6.o select_3cz6.o select_3nz6.o select_4c6.o select_4cz6.o select_4nz6.o select_4p6.o select_5c6.o select_5cz6.o select_5nz6.o select_4c7.o select_4cz7.o select_4nz7.o select_5c7.o select_5cz7.o select_5nz7.o select_5p7.o select_6p7.o select_4c9.o select_4cz9.o select_4nz9.o select_5c9.o select_5cz9.o select_5nz9.o color_weighted.o -lX11 -lm -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/build/garlic-1.6'
cp .garlicrc garlicrc
make[1]: Leaving directory '/build/garlic-1.6'
dh_auto_test
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary
dh binary
dh_testroot
dh_prep
dh_auto_install --destdir=debian/garlic/
dh_install
dh_installdocs
dh_installchangelogs
dh_installexamples
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
debian/rules override_dh_compress
make[1]: Entering directory '/build/garlic-1.6'
dh_compress -Xusr/share/doc/garlic/examples
chmod 644 /build/garlic-1.6/debian/garlic/usr/share/doc/garlic/examples/*.script
make[1]: Leaving directory '/build/garlic-1.6'
dh_fixperms
dh_missing
dh_strip
dh_makeshlibs
dh_shlibdeps
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'garlic' in '../garlic_1.6-3_arm64.deb'.
dpkg-deb: building package 'garlic-dbgsym' in '../garlic-dbgsym_1.6-3_arm64.deb'.
dpkg-genbuildinfo --build=binary -O../garlic_1.6-3_arm64.buildinfo
dpkg-genchanges --build=binary -O../garlic_1.6-3_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/30708 and its subdirectories
I: Current time: Mon Jun 10 20:58:53 -12 2024
I: pbuilder-time-stamp: 1718096333