I: pbuilder: network access will be disabled during build I: Current time: Tue Mar 19 08:03:27 -12 2024 I: pbuilder-time-stamp: 1710878607 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [genomicsdb_1.4.4-3.dsc] I: copying [./genomicsdb_1.4.4.orig-genomicsdb-htslib.tar.gz] I: copying [./genomicsdb_1.4.4.orig-genomicsdb-tiledb.tar.gz] I: copying [./genomicsdb_1.4.4.orig.tar.gz] I: copying [./genomicsdb_1.4.4-3.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Mar 26 01:44:40 2023 -12 gpgv: using RSA key 33CB284313E90BD27DCB4523600316A6DC277476 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./genomicsdb_1.4.4-3.dsc: no acceptable signature found dpkg-source: info: extracting genomicsdb in genomicsdb-1.4.4 dpkg-source: info: unpacking genomicsdb_1.4.4.orig.tar.gz dpkg-source: info: unpacking genomicsdb_1.4.4.orig-genomicsdb-htslib.tar.gz dpkg-source: info: unpacking genomicsdb_1.4.4.orig-genomicsdb-tiledb.tar.gz dpkg-source: info: unpacking genomicsdb_1.4.4-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying string_view_needs_cxx17.patch dpkg-source: info: applying no_download_of_dependencies.patch dpkg-source: info: applying using_htslib_from_component.patch dpkg-source: info: applying using_timedb_from_component.patch dpkg-source: info: applying strip_tiledb_CMakeLists.patch dpkg-source: info: applying ignoring_sdk_to_download.patch dpkg-source: info: applying use_shared_protobuf_lib.patch dpkg-source: info: applying missing_links_in_libs.patch dpkg-source: info: applying pom.patch dpkg-source: info: applying no_spark_in_Java_build.patch dpkg-source: info: applying JsonFormat_methods.patch dpkg-source: info: applying tests_in_all_target.patch dpkg-source: info: applying run_tests_in_not_yet_installed_dir.patch dpkg-source: info: applying build_jni.patch dpkg-source: info: applying library_names_and_install_paths.patch dpkg-source: info: applying htslib_define_PATH_MAX.patch dpkg-source: info: applying htslib_testShebang.patch dpkg-source: info: applying htslib_fix_float_precision dpkg-source: info: applying spelling.patch dpkg-source: info: applying handling_rpaths.patch dpkg-source: info: applying int_type_initialization.patch dpkg-source: info: applying missing_inclusion_tiledb_constants.patch dpkg-source: info: applying using_debian_packaged_catch2.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2438402/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='c2429cedf5bd4ada891ceea311fb9205' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2438402' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.V5OGhUoN/pbuilderrc_33g9 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.V5OGhUoN/b1 --logfile b1/build.log genomicsdb_1.4.4-3.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.104:3128' I: uname -a Linux codethink04-arm64 6.1.0-18-cloud-arm64 #1 SMP Debian 6.1.76-1 (2024-02-01) aarch64 GNU/Linux I: ls -l /bin total 7104 -rwxr-xr-x 1 root root 1346480 Apr 23 2023 bash -rwxr-xr-x 3 root root 67728 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 67728 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 67728 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 67664 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 68536 Sep 20 2022 cat -rwxr-xr-x 1 root root 68616 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 68552 Sep 20 2022 chmod -rwxr-xr-x 1 root root 68632 Sep 20 2022 chown -rwxr-xr-x 1 root root 200264 Sep 20 2022 cp -rwxr-xr-x 1 root root 133640 Jan 5 2023 dash -rwxr-xr-x 1 root root 134144 Sep 20 2022 date -rwxr-xr-x 1 root root 134248 Sep 20 2022 dd -rwxr-xr-x 1 root root 134888 Sep 20 2022 df -rwxr-xr-x 1 root root 200440 Sep 20 2022 dir -rwxr-xr-x 1 root root 141720 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 68408 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 68384 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 134584 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 67744 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 198880 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 93752 Apr 9 2022 gzip -rwxr-xr-x 1 root root 67592 Dec 19 2022 hostname -rwxr-xr-x 1 root root 68664 Sep 20 2022 ln -rwxr-xr-x 1 root root 69208 Mar 22 2023 login -rwxr-xr-x 1 root root 200440 Sep 20 2022 ls -rwxr-xr-x 1 root root 264360 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 134384 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 68768 Sep 20 2022 mknod -rwxr-xr-x 1 root root 68472 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 67752 Mar 22 2023 more -rwsr-xr-x 1 root root 67744 Mar 22 2023 mount -rwxr-xr-x 1 root root 67744 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 134728 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 68496 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 68456 Sep 20 2022 readlink -rwxr-xr-x 1 root root 68592 Sep 20 2022 rm -rwxr-xr-x 1 root root 68480 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 68392 Jul 28 2023 run-parts -rwxr-xr-x 1 root root 134536 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 68432 Sep 20 2022 sleep -rwxr-xr-x 1 root root 134088 Sep 20 2022 stty -rwsr-xr-x 1 root root 133312 Mar 22 2023 su -rwxr-xr-x 1 root root 68448 Sep 20 2022 sync -rwxr-xr-x 1 root root 539896 Jan 19 21:27 tar -rwxr-xr-x 1 root root 67904 Jul 28 2023 tempfile -rwxr-xr-x 1 root root 134160 Sep 20 2022 touch -rwxr-xr-x 1 root root 68384 Sep 20 2022 true -rwxr-xr-x 1 root root 67664 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 67744 Mar 22 2023 umount -rwxr-xr-x 1 root root 68416 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 200440 Sep 20 2022 vdir -rwxr-xr-x 1 root root 133312 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/2438402/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), catch2, cmake, default-jdk, javahelper, libbz2-dev, libcurlpp-dev, libfmt-dev, libmuparserx-dev, libopenmpi-dev, libprotobuf-dev, libspdlog-dev, libssl-dev, liblzma-dev, maven-debian-helper, protobuf-compiler, rapidjson-dev, testng, uuid-dev, libbuild-helper-maven-plugin-java, libcommons-io-java, libcommons-lang3-java, libgetopt-java, libguava-java, libhtsjdk-java, libjson-simple-java, liblog4j2-java, libmaven-antrun-plugin-java, libprotobuf-java, libprotobuf-java-format-java, libsurefire-java, chrpath dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19578 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on catch2; however: Package catch2 is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on default-jdk; however: Package default-jdk is not installed. pbuilder-satisfydepends-dummy depends on javahelper; however: Package javahelper is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libcurlpp-dev; however: Package libcurlpp-dev is not installed. pbuilder-satisfydepends-dummy depends on libfmt-dev; however: Package libfmt-dev is not installed. pbuilder-satisfydepends-dummy depends on libmuparserx-dev; however: Package libmuparserx-dev is not installed. pbuilder-satisfydepends-dummy depends on libopenmpi-dev; however: Package libopenmpi-dev is not installed. pbuilder-satisfydepends-dummy depends on libprotobuf-dev; however: Package libprotobuf-dev is not installed. pbuilder-satisfydepends-dummy depends on libspdlog-dev; however: Package libspdlog-dev is not installed. pbuilder-satisfydepends-dummy depends on libssl-dev; however: Package libssl-dev is not installed. pbuilder-satisfydepends-dummy depends on liblzma-dev; however: Package liblzma-dev is not installed. pbuilder-satisfydepends-dummy depends on maven-debian-helper; however: Package maven-debian-helper is not installed. pbuilder-satisfydepends-dummy depends on protobuf-compiler; however: Package protobuf-compiler is not installed. pbuilder-satisfydepends-dummy depends on rapidjson-dev; however: Package rapidjson-dev is not installed. pbuilder-satisfydepends-dummy depends on testng; however: Package testng is not installed. pbuilder-satisfydepends-dummy depends on uuid-dev; however: Package uuid-dev is not installed. pbuilder-satisfydepends-dummy depends on libbuild-helper-maven-plugin-java; however: Package libbuild-helper-maven-plugin-java is not installed. pbuilder-satisfydepends-dummy depends on libcommons-io-java; however: Package libcommons-io-java is not installed. pbuilder-satisfydepends-dummy depends on libcommons-lang3-java; however: Package libcommons-lang3-java is not installed. pbuilder-satisfydepends-dummy depends on libgetopt-java; however: Package libgetopt-java is not installed. pbuilder-satisfydepends-dummy depends on libguava-java; however: Package libguava-java is not installed. pbuilder-satisfydepends-dummy depends on libhtsjdk-java; however: Package libhtsjdk-java is not installed. pbuilder-satisfydepends-dummy depends on libjson-simple-java; however: Package libjson-simple-java is not installed. pbuilder-satisfydepends-dummy depends on liblog4j2-java; however: Package liblog4j2-java is not installed. pbuilder-satisfydepends-dummy depends on libmaven-antrun-plugin-java; however: Package libmaven-antrun-plugin-java is not installed. pbuilder-satisfydepends-dummy depends on libprotobuf-java; however: Package libprotobuf-java is not installed. pbuilder-satisfydepends-dummy depends on libprotobuf-java-format-java; however: Package libprotobuf-java-format-java is not installed. pbuilder-satisfydepends-dummy depends on libsurefire-java; however: Package libsurefire-java is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} ant{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} catch2{a} chrpath{a} cmake{a} cmake-data{a} dctrl-tools{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gfortran-12{a} gnupg{a} gnupg-l10n{a} gnupg-utils{a} gpg{a} gpg-agent{a} gpg-wks-client{a} gpg-wks-server{a} gpgconf{a} gpgsm{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} ibverbs-providers{a} intltool-debian{a} java-common{a} java-wrappers{a} javahelper{a} junit4{a} junit5{a} libaopalliance-java{a} libapache-pom-java{a} libapiguardian-java{a} libarchive-zip-perl{a} libarchive13{a} libasm-java{a} libasound2{a} libasound2-data{a} libassuan0{a} libatinject-jsr330-api-java{a} libatk1.0-0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libb-hooks-op-check-perl{a} libbatik-java{a} libbrotli1{a} libbsd0{a} libbsh-java{a} libbuild-helper-maven-plugin-java{a} libbz2-dev{a} libcairo2{a} libcbor0.8{a} libcdi-api-java{a} libclass-method-modifiers-perl{a} libclass-xsaccessor-perl{a} libclone-perl{a} libcommons-beanutils-java{a} libcommons-cli-java{a} libcommons-codec-java{a} libcommons-collections3-java{a} libcommons-compress-java{a} libcommons-configuration-java{a} libcommons-digester-java{a} libcommons-io-java{a} libcommons-jexl2-java{a} libcommons-lang-java{a} libcommons-lang3-java{a} libcommons-logging-java{a} libcommons-parent-java{a} libcommons-text-java{a} libcommons-validator-java{a} libcups2{a} libcurl4{a} libcurl4-openssl-dev{a} libcurlpp-dev{a} libcurlpp0{a} libdatrie1{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdom4j-java{a} libdoxia-core-java{a} libdoxia-java{a} libdoxia-sitetools-java{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libdynaloader-functions-perl{a} libedit2{a} libel-api-java{a} libelf1{a} libencode-locale-perl{a} liberror-prone-java{a} libevent-2.1-7{a} libevent-core-2.1-7{a} libevent-dev{a} libevent-extra-2.1-7{a} libevent-openssl-2.1-7{a} libevent-pthreads-2.1-7{a} libexpat1{a} libfabric1{a} libfido2-1{a} libfile-dirlist-perl{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-touch-perl{a} libfile-which-perl{a} libfmt-dev{a} libfmt9{a} libfontbox2-java{a} libfontconfig1{a} libfop-java{a} libfreetype6{a} libfribidi0{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgeronimo-annotation-1.3-spec-java{a} libgeronimo-interceptor-3.0-spec-java{a} libgetopt-java{a} libgfortran-12-dev{a} libgfortran5{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgoogle-gson-java{a} libgraphite2-3{a} libgtk2.0-0{a} libgtk2.0-common{a} libguava-java{a} libguice-java{a} libhamcrest-java{a} libharfbuzz0b{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhtsjdk-java{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libhttpclient-java{a} libhttpcore-java{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libibverbs-dev{a} libibverbs1{a} libicu72{a} libimport-into-perl{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libipc-run-perl{a} libitext1-java{a} libjansi-java{a} libjaxen-java{a} libjaxp1.3-java{a} libjbig0{a} libjcommander-java{a} libjetty9-java{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjson-simple-java{a} libjsoncpp25{a} libjsoup-java{a} libjsp-api-java{a} libjsr305-java{a} libjtidy-java{a} libksba8{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblightcouch-java{a} libllvm15{a} liblog4j2-java{a} libltdl-dev{a} libltdl7{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmaven-antrun-plugin-java{a} libmaven-archiver-java{a} libmaven-clean-plugin-java{a} libmaven-common-artifact-filters-java{a} libmaven-compiler-plugin-java{a} libmaven-file-management-java{a} libmaven-filtering-java{a} libmaven-jar-plugin-java{a} libmaven-parent-java{a} libmaven-plugin-tools-java{a} libmaven-reporting-api-java{a} libmaven-reporting-exec-java{a} libmaven-reporting-impl-java{a} libmaven-resolver-java{a} libmaven-resources-plugin-java{a} libmaven-shared-incremental-java{a} libmaven-shared-io-java{a} libmaven-shared-utils-java{a} libmaven-site-plugin-java{a} libmaven3-core-java{a} libmbedcrypto7{a} libmbedtls14{a} libmbedx509-1{a} libmjson-java{a} libmodule-runtime-perl{a} libmongodb-java{a} libmoo-perl{a} libmunge2{a} libmuparserx-dev{a} libmuparserx4.0.11{a} libncbi-ngs3{a} libncbi-vdb3{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnghttp2-14{a} libngs-java{a} libngs-jni{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnpth0{a} libnspr4{a} libnss3{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libopentest4j-java{a} libopentest4j-reporting-java{a} liboro-java{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libparams-classify-perl{a} libpciaccess0{a} libpcsclite1{a} libpicocli-java{a} libpipeline1{a} libpixman-1-0{a} libplexus-ant-factory-java{a} libplexus-archiver-java{a} libplexus-bsh-factory-java{a} libplexus-build-api-java{a} libplexus-cipher-java{a} libplexus-classworlds-java{a} libplexus-compiler-java{a} libplexus-component-annotations-java{a} libplexus-container-default-java{a} libplexus-container-default1.5-java{a} libplexus-i18n-java{a} libplexus-interpolation-java{a} libplexus-io-java{a} libplexus-languages-java{a} libplexus-sec-dispatcher-java{a} libplexus-utils2-java{a} libplexus-velocity-java{a} libpmix-dev{a} libpmix2{a} libpng16-16{a} libproc2-0{a} libprotobuf-dev{a} libprotobuf-java{a} libprotobuf-java-format-java{a} libprotobuf-lite32{a} libprotobuf32{a} libprotoc32{a} libpsl5{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqdox-java{a} libqdox2-java{a} librdmacm1{a} libreadline8{a} libregexp-ipv6-perl{a} librhash0{a} librhino-java{a} librole-tiny-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libservlet-api-java{a} libsisu-inject-java{a} libsisu-plexus-java{a} libslf4j-java{a} libsnappy-java{a} libsnappy-jni{a} libsnappy1v5{a} libspdlog-dev{a} libspdlog1.10{a} libssh2-1{a} libssl-dev{a} libsub-override-perl{a} libsub-quote-perl{a} libsurefire-java{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libucx0{a} libunivocity-parsers-java{a} liburi-perl{a} libuv1{a} libvelocity-tools-java{a} libwagon-file-java{a} libwagon-http-shaded-java{a} libwagon-provider-api-java{a} libwebp7{a} libwebsocket-api-java{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxalan2-java{a} libxau6{a} libxbean-reflect-java{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxerces2-java{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxml-commons-external-java{a} libxml-commons-resolver1.1-java{a} libxml2{a} libxml2-utils{a} libxmlgraphics-commons-java{a} libxnvctrl0{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxtst6{a} libxxf86vm1{a} libxz-java{a} libz3-4{a} m4{a} man-db{a} maven{a} maven-debian-helper{a} maven-repo-helper{a} media-types{a} ncbi-vdb-data{a} netbase{a} ocl-icd-libopencl1{a} openjdk-17-jdk{a} openjdk-17-jdk-headless{a} openjdk-17-jre{a} openjdk-17-jre-headless{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} openssl{a} patchutils{a} perl-openssl-defaults{a} pinentry-curses{a} po-debconf{a} procps{a} protobuf-compiler{a} python3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} rapidjson-dev{a} readline-common{a} sensible-utils{a} sgml-base{a} shared-mime-info{a} testng{a} unzip{a} uuid-dev{a} velocity{a} wdiff{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf ant-optional bzip2-doc curl dbus debian-keyring dput dput-ng dupload equivs fonts-dejavu-extra icc-profiles-free javascript-common libarchive-cpio-perl libatk-wrapper-java-jni libcoarrays-openmpi-dev libdata-dump-perl libdistro-info-perl libgail-common libgdk-pixbuf2.0-bin libgit-wrapper-perl libgitlab-api-v4-perl libglib2.0-data libgtk2.0-bin libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libldap-common liblist-compare-perl libmail-sendmail-perl libmailtools-perl libnamespace-clean-perl librsvg2-common libsasl2-modules libsaxon-java libsoap-lite-perl libstring-shellquote-perl libxstring-perl libxt-dev libyaml-snake-java licensecheck lintian lynx pristine-tar psmisc publicsuffix python3-apt python3-debian python3-magic python3-requests python3-unidiff python3-xdg strace wget xauth xdg-user-dirs 0 packages upgraded, 428 newly installed, 0 to remove and 0 not upgraded. Need to get 319 MB of archives. After unpacking 957 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-minimal arm64 3.11.2-6 [806 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 python3.11-minimal arm64 3.11.2-6 [1858 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 python3-minimal arm64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 libreadline8 arm64 8.2-1.3 [155 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-stdlib arm64 3.11.2-6 [1747 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 python3.11 arm64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 libpython3-stdlib arm64 3.11.2-1+b1 [9296 B] Get: 11 http://deb.debian.org/debian bookworm/main arm64 python3 arm64 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 sgml-base all 1.31 [15.4 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 netbase all 6.4 [12.8 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 libproc2-0 arm64 2:4.0.2-3 [60.1 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 procps arm64 2:4.0.2-3 [698 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 openssl arm64 3.0.11-1~deb12u2 [1385 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 ca-certificates all 20230311 [153 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 23 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 libbsd0 arm64 0.11.7-2 [115 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 libedit2 arm64 3.1-20221030-2 [88.1 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 libcbor0.8 arm64 0.8.0-2+b1 [26.0 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 libfido2-1 arm64 1.12.0-2+b1 [72.6 kB] Get: 32 http://deb.debian.org/debian bookworm/main arm64 openssh-client arm64 1:9.2p1-2+deb12u2 [933 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 hicolor-icon-theme all 0.17-2 [11.4 kB] Get: 34 http://deb.debian.org/debian bookworm/main arm64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-1 [306 kB] Get: 35 http://deb.debian.org/debian bookworm/main arm64 libglib2.0-0 arm64 2.74.6-2 [1310 kB] Get: 36 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 37 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.3~deb12u1 [619 kB] Get: 38 http://deb.debian.org/debian bookworm/main arm64 shared-mime-info arm64 2.2-1 [727 kB] Get: 39 http://deb.debian.org/debian bookworm/main arm64 libjpeg62-turbo arm64 1:2.1.5-2 [171 kB] Get: 40 http://deb.debian.org/debian bookworm/main arm64 libpng16-16 arm64 1.6.39-2 [269 kB] Get: 41 http://deb.debian.org/debian bookworm/main arm64 libdeflate0 arm64 1.14-1 [54.3 kB] Get: 42 http://deb.debian.org/debian bookworm/main arm64 libjbig0 arm64 2.1-6.1 [30.0 kB] Get: 43 http://deb.debian.org/debian bookworm/main arm64 liblerc4 arm64 4.0.0+ds-2 [138 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 libwebp7 arm64 1.2.4-0.2+deb12u1 [260 kB] Get: 45 http://deb.debian.org/debian bookworm/main arm64 libtiff6 arm64 4.5.0-6+deb12u1 [301 kB] Get: 46 http://deb.debian.org/debian bookworm/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.10+dfsg-1+b1 [130 kB] Get: 47 http://deb.debian.org/debian bookworm/main arm64 gtk-update-icon-cache arm64 3.24.38-2~deb12u1 [43.4 kB] Get: 48 http://deb.debian.org/debian bookworm/main arm64 adwaita-icon-theme all 43-1 [5124 kB] Get: 49 http://deb.debian.org/debian bookworm/main arm64 ca-certificates-java all 20230710~deb12u1 [11.9 kB] Get: 50 http://deb.debian.org/debian bookworm/main arm64 java-common all 0.74 [6388 B] Get: 51 http://deb.debian.org/debian bookworm/main arm64 libavahi-common-data arm64 0.8-10 [107 kB] Get: 52 http://deb.debian.org/debian bookworm/main arm64 libavahi-common3 arm64 0.8-10 [40.6 kB] Get: 53 http://deb.debian.org/debian bookworm/main arm64 libdbus-1-3 arm64 1.14.10-1~deb12u1 [193 kB] Get: 54 http://deb.debian.org/debian bookworm/main arm64 libavahi-client3 arm64 0.8-10 [43.8 kB] Get: 55 http://deb.debian.org/debian bookworm/main arm64 libcups2 arm64 2.4.2-3+deb12u5 [229 kB] Get: 56 http://deb.debian.org/debian bookworm/main arm64 liblcms2-2 arm64 2.14-2 [143 kB] Get: 57 http://deb.debian.org/debian bookworm/main arm64 libbrotli1 arm64 1.0.9-2+b6 [269 kB] Get: 58 http://deb.debian.org/debian bookworm/main arm64 libfreetype6 arm64 2.12.1+dfsg-5 [369 kB] Get: 59 http://deb.debian.org/debian bookworm/main arm64 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 60 http://deb.debian.org/debian bookworm/main arm64 fontconfig-config arm64 2.14.1-4 [315 kB] Get: 61 http://deb.debian.org/debian bookworm/main arm64 libfontconfig1 arm64 2.14.1-4 [381 kB] Get: 62 http://deb.debian.org/debian bookworm/main arm64 libnspr4 arm64 2:4.35-1 [105 kB] Get: 63 http://deb.debian.org/debian bookworm/main arm64 libnss3 arm64 2:3.87.1-1 [1218 kB] Get: 64 http://deb.debian.org/debian bookworm/main arm64 libasound2-data all 1.2.8-1 [20.5 kB] Get: 65 http://deb.debian.org/debian bookworm/main arm64 libasound2 arm64 1.2.8-1+b1 [327 kB] Get: 66 http://deb.debian.org/debian bookworm/main arm64 libgraphite2-3 arm64 1.3.14-1 [75.6 kB] Get: 67 http://deb.debian.org/debian bookworm/main arm64 libharfbuzz0b arm64 6.0.0+dfsg-3 [1914 kB] Get: 68 http://deb.debian.org/debian bookworm/main arm64 libpcsclite1 arm64 1.9.9-2 [49.3 kB] Get: 69 http://deb.debian.org/debian bookworm/main arm64 openjdk-17-jre-headless arm64 17.0.10+7-1~deb12u1 [42.7 MB] Get: 70 http://deb.debian.org/debian bookworm/main arm64 default-jre-headless arm64 2:1.17-74 [2932 B] Get: 71 http://deb.debian.org/debian bookworm/main arm64 ant all 1.10.13-1 [2161 kB] Get: 72 http://deb.debian.org/debian bookworm/main arm64 at-spi2-common all 2.46.0-5 [162 kB] Get: 73 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 74 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 75 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 76 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 77 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 78 http://deb.debian.org/debian bookworm/main arm64 catch2 arm64 2.13.10-1 [447 kB] Get: 79 http://deb.debian.org/debian bookworm/main arm64 chrpath arm64 0.16-2+b1 [16.0 kB] Get: 80 http://deb.debian.org/debian bookworm/main arm64 libarchive13 arm64 3.6.2-1 [316 kB] Get: 81 http://deb.debian.org/debian bookworm/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg-10 [20.8 kB] Get: 82 http://deb.debian.org/debian bookworm/main arm64 libsasl2-2 arm64 2.1.28+dfsg-10 [58.0 kB] Get: 83 http://deb.debian.org/debian bookworm/main arm64 libldap-2.5-0 arm64 2.5.13+dfsg-5 [171 kB] Get: 84 http://deb.debian.org/debian bookworm/main arm64 libnghttp2-14 arm64 1.52.0-1+deb12u1 [68.3 kB] Get: 85 http://deb.debian.org/debian bookworm/main arm64 libpsl5 arm64 0.21.2-1 [58.6 kB] Get: 86 http://deb.debian.org/debian bookworm/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 87 http://deb.debian.org/debian bookworm/main arm64 libssh2-1 arm64 1.10.0-3+b1 [172 kB] Get: 88 http://deb.debian.org/debian bookworm/main arm64 libcurl4 arm64 7.88.1-10+deb12u5 [366 kB] Get: 89 http://deb.debian.org/debian bookworm/main arm64 libjsoncpp25 arm64 1.9.5-4 [72.3 kB] Get: 90 http://deb.debian.org/debian bookworm/main arm64 librhash0 arm64 1.4.3-3 [131 kB] Get: 91 http://deb.debian.org/debian bookworm/main arm64 libuv1 arm64 1.44.2-1 [133 kB] Get: 92 http://deb.debian.org/debian bookworm/main arm64 cmake-data all 3.25.1-1 [2026 kB] Get: 93 http://deb.debian.org/debian bookworm/main arm64 cmake arm64 3.25.1-1 [6806 kB] Get: 94 http://deb.debian.org/debian bookworm/main arm64 dctrl-tools arm64 2.24-3 [101 kB] Get: 95 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 96 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 97 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 98 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 99 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 100 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 101 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 102 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 103 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 104 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 105 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 106 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 107 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 108 http://deb.debian.org/debian bookworm/main arm64 libgtk2.0-common all 2.24.33-2 [2700 kB] Get: 109 http://deb.debian.org/debian bookworm/main arm64 libatk1.0-0 arm64 2.46.0-5 [47.4 kB] Get: 110 http://deb.debian.org/debian bookworm/main arm64 libpixman-1-0 arm64 0.42.2-1 [470 kB] Get: 111 http://deb.debian.org/debian bookworm/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get: 112 http://deb.debian.org/debian bookworm/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 113 http://deb.debian.org/debian bookworm/main arm64 libxcb1 arm64 1.15-1 [143 kB] Get: 114 http://deb.debian.org/debian bookworm/main arm64 libx11-data all 2:1.8.4-2+deb12u2 [292 kB] Get: 115 http://deb.debian.org/debian bookworm/main arm64 libx11-6 arm64 2:1.8.4-2+deb12u2 [735 kB] Get: 116 http://deb.debian.org/debian bookworm/main arm64 libxcb-render0 arm64 1.15-1 [115 kB] Get: 117 http://deb.debian.org/debian bookworm/main arm64 libxcb-shm0 arm64 1.15-1 [106 kB] Get: 118 http://deb.debian.org/debian bookworm/main arm64 libxext6 arm64 2:1.3.4-1+b1 [51.7 kB] Get: 119 http://deb.debian.org/debian bookworm/main arm64 libxrender1 arm64 1:0.9.10-1.1 [32.0 kB] Get: 120 http://deb.debian.org/debian bookworm/main arm64 libcairo2 arm64 1.16.0-7 [527 kB] Get: 121 http://deb.debian.org/debian bookworm/main arm64 fontconfig arm64 2.14.1-4 [449 kB] Get: 122 http://deb.debian.org/debian bookworm/main arm64 libfribidi0 arm64 1.0.8-2.1 [64.9 kB] Get: 123 http://deb.debian.org/debian bookworm/main arm64 libthai-data all 0.1.29-1 [176 kB] Get: 124 http://deb.debian.org/debian bookworm/main arm64 libdatrie1 arm64 0.2.13-2+b1 [42.6 kB] Get: 125 http://deb.debian.org/debian bookworm/main arm64 libthai0 arm64 0.1.29-1 [56.2 kB] Get: 126 http://deb.debian.org/debian bookworm/main arm64 libpango-1.0-0 arm64 1.50.12+ds-1 [200 kB] Get: 127 http://deb.debian.org/debian bookworm/main arm64 libpangoft2-1.0-0 arm64 1.50.12+ds-1 [44.5 kB] Get: 128 http://deb.debian.org/debian bookworm/main arm64 libpangocairo-1.0-0 arm64 1.50.12+ds-1 [32.0 kB] Get: 129 http://deb.debian.org/debian bookworm/main arm64 libxcomposite1 arm64 1:0.4.5-1 [16.6 kB] Get: 130 http://deb.debian.org/debian bookworm/main arm64 libxfixes3 arm64 1:6.0.0-2 [22.9 kB] Get: 131 http://deb.debian.org/debian bookworm/main arm64 libxcursor1 arm64 1:1.2.1-1 [40.2 kB] Get: 132 http://deb.debian.org/debian bookworm/main arm64 libxdamage1 arm64 1:1.1.6-1 [15.2 kB] Get: 133 http://deb.debian.org/debian bookworm/main arm64 libxi6 arm64 2:1.8-1+b1 [82.3 kB] Get: 134 http://deb.debian.org/debian bookworm/main arm64 libxinerama1 arm64 2:1.1.4-3 [17.8 kB] Get: 135 http://deb.debian.org/debian bookworm/main arm64 libxrandr2 arm64 2:1.5.2-2+b1 [38.4 kB] Get: 136 http://deb.debian.org/debian bookworm/main arm64 libgtk2.0-0 arm64 2.24.33-2 [1704 kB] Get: 137 http://deb.debian.org/debian bookworm/main arm64 libglvnd0 arm64 1.6.0-1 [41.4 kB] Get: 138 http://deb.debian.org/debian bookworm/main arm64 libdrm-common all 2.4.114-1 [7112 B] Get: 139 http://deb.debian.org/debian bookworm/main arm64 libdrm2 arm64 2.4.114-1+b1 [36.7 kB] Get: 140 http://deb.debian.org/debian bookworm/main arm64 libglapi-mesa arm64 22.3.6-1+deb12u1 [44.7 kB] Get: 141 http://deb.debian.org/debian bookworm/main arm64 libx11-xcb1 arm64 2:1.8.4-2+deb12u2 [192 kB] Get: 142 http://deb.debian.org/debian bookworm/main arm64 libxcb-dri2-0 arm64 1.15-1 [107 kB] Get: 143 http://deb.debian.org/debian bookworm/main arm64 libxcb-dri3-0 arm64 1.15-1 [107 kB] Get: 144 http://deb.debian.org/debian bookworm/main arm64 libxcb-glx0 arm64 1.15-1 [123 kB] Get: 145 http://deb.debian.org/debian bookworm/main arm64 libxcb-present0 arm64 1.15-1 [106 kB] Get: 146 http://deb.debian.org/debian bookworm/main arm64 libxcb-randr0 arm64 1.15-1 [117 kB] Get: 147 http://deb.debian.org/debian bookworm/main arm64 libxcb-sync1 arm64 1.15-1 [109 kB] Get: 148 http://deb.debian.org/debian bookworm/main arm64 libxcb-xfixes0 arm64 1.15-1 [110 kB] Get: 149 http://deb.debian.org/debian bookworm/main arm64 libxshmfence1 arm64 1.3-1 [8712 B] Get: 150 http://deb.debian.org/debian bookworm/main arm64 libxxf86vm1 arm64 1:1.1.4-1+b2 [20.1 kB] Get: 151 http://deb.debian.org/debian bookworm/main arm64 libdrm-amdgpu1 arm64 2.4.114-1+b1 [20.4 kB] Get: 152 http://deb.debian.org/debian bookworm/main arm64 libdrm-nouveau2 arm64 2.4.114-1+b1 [18.4 kB] Get: 153 http://deb.debian.org/debian bookworm/main arm64 libdrm-radeon1 arm64 2.4.114-1+b1 [20.9 kB] Get: 154 http://deb.debian.org/debian bookworm/main arm64 libz3-4 arm64 4.8.12-3.1 [6282 kB] Get: 155 http://deb.debian.org/debian bookworm/main arm64 libllvm15 arm64 1:15.0.6-4+b1 [20.7 MB] Get: 156 http://deb.debian.org/debian bookworm/main arm64 libsensors-config all 1:3.6.0-7.1 [14.3 kB] Get: 157 http://deb.debian.org/debian bookworm/main arm64 libsensors5 arm64 1:3.6.0-7.1 [33.3 kB] Get: 158 http://deb.debian.org/debian bookworm/main arm64 libgl1-mesa-dri arm64 22.3.6-1+deb12u1 [6278 kB] Get: 159 http://deb.debian.org/debian bookworm/main arm64 libglx-mesa0 arm64 22.3.6-1+deb12u1 [146 kB] Get: 160 http://deb.debian.org/debian bookworm/main arm64 libglx0 arm64 1.6.0-1 [30.8 kB] Get: 161 http://deb.debian.org/debian bookworm/main arm64 libgl1 arm64 1.6.0-1 [90.2 kB] Get: 162 http://deb.debian.org/debian bookworm/main arm64 libgif7 arm64 5.2.1-2.5 [46.7 kB] Get: 163 http://deb.debian.org/debian bookworm/main arm64 x11-common all 1:7.7+23 [252 kB] Get: 164 http://deb.debian.org/debian bookworm/main arm64 libxtst6 arm64 2:1.2.3-1.1 [27.8 kB] Get: 165 http://deb.debian.org/debian bookworm/main arm64 openjdk-17-jre arm64 17.0.10+7-1~deb12u1 [173 kB] Get: 166 http://deb.debian.org/debian bookworm/main arm64 default-jre arm64 2:1.17-74 [1056 B] Get: 167 http://deb.debian.org/debian bookworm/main arm64 openjdk-17-jdk-headless arm64 17.0.10+7-1~deb12u1 [70.5 MB] Get: 168 http://deb.debian.org/debian bookworm/main arm64 default-jdk-headless arm64 2:1.17-74 [1108 B] Get: 169 http://deb.debian.org/debian bookworm/main arm64 openjdk-17-jdk arm64 17.0.10+7-1~deb12u1 [2377 kB] Get: 170 http://deb.debian.org/debian bookworm/main arm64 default-jdk arm64 2:1.17-74 [1068 B] Get: 171 http://deb.debian.org/debian bookworm/main arm64 libassuan0 arm64 2.5.5-5 [45.9 kB] Get: 172 http://deb.debian.org/debian bookworm/main arm64 gpgconf arm64 2.2.40-1.1 [557 kB] Get: 173 http://deb.debian.org/debian bookworm/main arm64 libksba8 arm64 1.6.3-2 [119 kB] Get: 174 http://deb.debian.org/debian bookworm/main arm64 libnpth0 arm64 1.6-3 [18.6 kB] Get: 175 http://deb.debian.org/debian bookworm/main arm64 dirmngr arm64 2.2.40-1.1 [770 kB] Get: 176 http://deb.debian.org/debian bookworm/main arm64 gnupg-l10n all 2.2.40-1.1 [1093 kB] Get: 177 http://deb.debian.org/debian bookworm/main arm64 gnupg-utils arm64 2.2.40-1.1 [880 kB] Get: 178 http://deb.debian.org/debian bookworm/main arm64 gpg arm64 2.2.40-1.1 [903 kB] Get: 179 http://deb.debian.org/debian bookworm/main arm64 pinentry-curses arm64 1.2.1-1 [75.2 kB] Get: 180 http://deb.debian.org/debian bookworm/main arm64 gpg-agent arm64 2.2.40-1.1 [673 kB] Get: 181 http://deb.debian.org/debian bookworm/main arm64 gpg-wks-client arm64 2.2.40-1.1 [532 kB] Get: 182 http://deb.debian.org/debian bookworm/main arm64 gpg-wks-server arm64 2.2.40-1.1 [524 kB] Get: 183 http://deb.debian.org/debian bookworm/main arm64 gpgsm arm64 2.2.40-1.1 [651 kB] Get: 184 http://deb.debian.org/debian bookworm/main arm64 gnupg all 2.2.40-1.1 [846 kB] Get: 185 http://deb.debian.org/debian bookworm/main arm64 libfile-dirlist-perl all 0.05-3 [7600 B] Get: 186 http://deb.debian.org/debian bookworm/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 187 http://deb.debian.org/debian bookworm/main arm64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get: 188 http://deb.debian.org/debian bookworm/main arm64 libfile-touch-perl all 0.12-2 [8816 B] Get: 189 http://deb.debian.org/debian bookworm/main arm64 libio-pty-perl arm64 1:1.17-1 [34.5 kB] Get: 190 http://deb.debian.org/debian bookworm/main arm64 libipc-run-perl all 20220807.0-1 [104 kB] Get: 191 http://deb.debian.org/debian bookworm/main arm64 libclass-method-modifiers-perl all 2.14-1 [18.1 kB] Get: 192 http://deb.debian.org/debian bookworm/main arm64 libclass-xsaccessor-perl arm64 1.19-4+b1 [35.3 kB] Get: 193 http://deb.debian.org/debian bookworm/main arm64 libb-hooks-op-check-perl arm64 0.22-2+b1 [10.4 kB] Get: 194 http://deb.debian.org/debian bookworm/main arm64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get: 195 http://deb.debian.org/debian bookworm/main arm64 libdevel-callchecker-perl arm64 0.008-2 [15.9 kB] Get: 196 http://deb.debian.org/debian bookworm/main arm64 libparams-classify-perl arm64 0.015-2+b1 [22.9 kB] Get: 197 http://deb.debian.org/debian bookworm/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 198 http://deb.debian.org/debian bookworm/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Get: 199 http://deb.debian.org/debian bookworm/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get: 200 http://deb.debian.org/debian bookworm/main arm64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get: 201 http://deb.debian.org/debian bookworm/main arm64 libmoo-perl all 2.005005-1 [58.0 kB] Get: 202 http://deb.debian.org/debian bookworm/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 203 http://deb.debian.org/debian bookworm/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 204 http://deb.debian.org/debian bookworm/main arm64 libhttp-date-perl all 6.05-2 [10.5 kB] Get: 205 http://deb.debian.org/debian bookworm/main arm64 libfile-listing-perl all 6.15-1 [12.6 kB] Get: 206 http://deb.debian.org/debian bookworm/main arm64 libhtml-tagset-perl all 3.20-6 [11.7 kB] Get: 207 http://deb.debian.org/debian bookworm/main arm64 libregexp-ipv6-perl all 0.03-3 [5212 B] Get: 208 http://deb.debian.org/debian bookworm/main arm64 liburi-perl all 5.17-1 [90.4 kB] Get: 209 http://deb.debian.org/debian bookworm/main arm64 libhtml-parser-perl arm64 3.81-1 [98.6 kB] Get: 210 http://deb.debian.org/debian bookworm/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 211 http://deb.debian.org/debian bookworm/main arm64 libclone-perl arm64 0.46-1 [13.5 kB] Get: 212 http://deb.debian.org/debian bookworm/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 213 http://deb.debian.org/debian bookworm/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 214 http://deb.debian.org/debian bookworm/main arm64 libhttp-message-perl all 6.44-1 [81.7 kB] Get: 215 http://deb.debian.org/debian bookworm/main arm64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get: 216 http://deb.debian.org/debian bookworm/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 217 http://deb.debian.org/debian bookworm/main arm64 perl-openssl-defaults arm64 7+b1 [7924 B] Get: 218 http://deb.debian.org/debian bookworm/main arm64 libnet-ssleay-perl arm64 1.92-2+b1 [308 kB] Get: 219 http://deb.debian.org/debian bookworm/main arm64 libio-socket-ssl-perl all 2.081-2 [219 kB] Get: 220 http://deb.debian.org/debian bookworm/main arm64 libnet-http-perl all 6.22-1 [25.3 kB] Get: 221 http://deb.debian.org/debian bookworm/main arm64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get: 222 http://deb.debian.org/debian bookworm/main arm64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 223 http://deb.debian.org/debian bookworm/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 224 http://deb.debian.org/debian bookworm/main arm64 libwww-perl all 6.68-1 [186 kB] Get: 225 http://deb.debian.org/debian bookworm/main arm64 patchutils arm64 0.4.2-1 [73.5 kB] Get: 226 http://deb.debian.org/debian bookworm/main arm64 wdiff arm64 1.2.2-5 [119 kB] Get: 227 http://deb.debian.org/debian bookworm/main arm64 devscripts arm64 2.23.4+deb12u1 [1073 kB] Get: 228 http://deb.debian.org/debian bookworm/main arm64 libgfortran5 arm64 12.2.0-14 [340 kB] Get: 229 http://deb.debian.org/debian bookworm/main arm64 libgfortran-12-dev arm64 12.2.0-14 [396 kB] Get: 230 http://deb.debian.org/debian bookworm/main arm64 gfortran-12 arm64 12.2.0-14 [8646 kB] Get: 231 http://deb.debian.org/debian bookworm/main arm64 libnl-3-200 arm64 3.7.0-0.2+b1 [60.2 kB] Get: 232 http://deb.debian.org/debian bookworm/main arm64 libnl-route-3-200 arm64 3.7.0-0.2+b1 [168 kB] Get: 233 http://deb.debian.org/debian bookworm/main arm64 libibverbs1 arm64 44.0-2 [56.8 kB] Get: 234 http://deb.debian.org/debian bookworm/main arm64 ibverbs-providers arm64 44.0-2 [306 kB] Get: 235 http://deb.debian.org/debian bookworm/main arm64 unzip arm64 6.0-28 [157 kB] Get: 236 http://deb.debian.org/debian bookworm/main arm64 java-wrappers all 0.4 [8916 B] Get: 237 http://deb.debian.org/debian bookworm/main arm64 javahelper all 0.78 [97.2 kB] Get: 238 http://deb.debian.org/debian bookworm/main arm64 libhamcrest-java all 2.2-1 [121 kB] Get: 239 http://deb.debian.org/debian bookworm/main arm64 junit4 all 4.13.2-3 [348 kB] Get: 240 http://deb.debian.org/debian bookworm/main arm64 libapiguardian-java all 1.1.2-1 [4656 B] Get: 241 http://deb.debian.org/debian bookworm/main arm64 libopentest4j-java all 1.2.0-4 [9516 B] Get: 242 http://deb.debian.org/debian bookworm/main arm64 libopentest4j-reporting-java all 0.1.0-M1-2 [49.0 kB] Get: 243 http://deb.debian.org/debian bookworm/main arm64 libpicocli-java all 4.6.2-2 [390 kB] Get: 244 http://deb.debian.org/debian bookworm/main arm64 libunivocity-parsers-java all 2.9.1-1 [397 kB] Get: 245 http://deb.debian.org/debian bookworm/main arm64 junit5 all 5.9.2-1 [2398 kB] Get: 246 http://deb.debian.org/debian bookworm/main arm64 libaopalliance-java all 20070526-7 [8572 B] Get: 247 http://deb.debian.org/debian bookworm/main arm64 libapache-pom-java all 29-2 [5276 B] Get: 248 http://deb.debian.org/debian bookworm/main arm64 libasm-java all 9.4-1 [389 kB] Get: 249 http://deb.debian.org/debian bookworm/main arm64 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] Get: 250 http://deb.debian.org/debian bookworm/main arm64 libjaxp1.3-java all 1.3.05-6 [227 kB] Get: 251 http://deb.debian.org/debian bookworm/main arm64 libxml-commons-external-java all 1.4.01-5 [240 kB] Get: 252 http://deb.debian.org/debian bookworm/main arm64 libcommons-parent-java all 56-1 [10.8 kB] Get: 253 http://deb.debian.org/debian bookworm/main arm64 libcommons-io-java all 2.11.0-2 [319 kB] Get: 254 http://deb.debian.org/debian bookworm/main arm64 libcommons-logging-java all 1.2-3 [62.4 kB] Get: 255 http://deb.debian.org/debian bookworm/main arm64 libxmlgraphics-commons-java all 2.8-2 [623 kB] Get: 256 http://deb.debian.org/debian bookworm/main arm64 libbatik-java all 1.16+dfsg-1+deb12u1 [3949 kB] Get: 257 http://deb.debian.org/debian bookworm/main arm64 libbsh-java all 2.0b4-20 [291 kB] Get: 258 http://deb.debian.org/debian bookworm/main arm64 libmaven-shared-utils-java all 3.3.4-1 [138 kB] Get: 259 http://deb.debian.org/debian bookworm/main arm64 libcommons-cli-java all 1.5.0-1 [60.0 kB] Get: 260 http://deb.debian.org/debian bookworm/main arm64 libcommons-lang3-java all 3.12.0-2 [561 kB] Get: 261 http://deb.debian.org/debian bookworm/main arm64 libgeronimo-annotation-1.3-spec-java all 1.3-1 [11.1 kB] Get: 262 http://deb.debian.org/debian bookworm/main arm64 liberror-prone-java all 2.18.0-1 [22.5 kB] Get: 263 http://deb.debian.org/debian bookworm/main arm64 libjsr305-java all 0.1~+svn49-11 [26.9 kB] Get: 264 http://deb.debian.org/debian bookworm/main arm64 libguava-java all 31.1-1 [2613 kB] Get: 265 http://deb.debian.org/debian bookworm/main arm64 libguice-java all 4.2.3-2 [1435 kB] Get: 266 http://deb.debian.org/debian bookworm/main arm64 libmaven-parent-java all 35-1 [6140 B] Get: 267 http://deb.debian.org/debian bookworm/main arm64 libplexus-utils2-java all 3.4.2-1 [258 kB] Get: 268 http://deb.debian.org/debian bookworm/main arm64 libwagon-provider-api-java all 3.5.3-1 [48.2 kB] Get: 269 http://deb.debian.org/debian bookworm/main arm64 libmaven-resolver-java all 1.6.3-1 [548 kB] Get: 270 http://deb.debian.org/debian bookworm/main arm64 libplexus-cipher-java all 2.0-1 [14.9 kB] Get: 271 http://deb.debian.org/debian bookworm/main arm64 libplexus-classworlds-java all 2.7.0-1 [50.6 kB] Get: 272 http://deb.debian.org/debian bookworm/main arm64 libplexus-component-annotations-java all 2.1.1-1 [7660 B] Get: 273 http://deb.debian.org/debian bookworm/main arm64 libplexus-interpolation-java all 1.26-1 [76.8 kB] Get: 274 http://deb.debian.org/debian bookworm/main arm64 libplexus-sec-dispatcher-java all 2.0-3 [28.3 kB] Get: 275 http://deb.debian.org/debian bookworm/main arm64 libgeronimo-interceptor-3.0-spec-java all 1.0.1-4 [8484 B] Get: 276 http://deb.debian.org/debian bookworm/main arm64 libcdi-api-java all 1.2-3 [54.3 kB] Get: 277 http://deb.debian.org/debian bookworm/main arm64 libslf4j-java all 1.7.32-1 [144 kB] Get: 278 http://deb.debian.org/debian bookworm/main arm64 libsisu-inject-java all 0.3.4-2 [347 kB] Get: 279 http://deb.debian.org/debian bookworm/main arm64 libsisu-plexus-java all 0.3.4-3 [181 kB] Get: 280 http://deb.debian.org/debian bookworm/main arm64 libmaven3-core-java all 3.8.7-1 [1572 kB] Get: 281 http://deb.debian.org/debian bookworm/main arm64 libmaven-shared-io-java all 3.0.0-4 [33.2 kB] Get: 282 http://deb.debian.org/debian bookworm/main arm64 libmaven-file-management-java all 3.0.0-1 [35.1 kB] Get: 283 http://deb.debian.org/debian bookworm/main arm64 libbuild-helper-maven-plugin-java all 3.3.0-1 [59.5 kB] Get: 284 http://deb.debian.org/debian bookworm/main arm64 libbz2-dev arm64 1.0.8-5+b1 [31.5 kB] Get: 285 http://deb.debian.org/debian bookworm/main arm64 libcommons-collections3-java all 3.2.2-2 [526 kB] Get: 286 http://deb.debian.org/debian bookworm/main arm64 libcommons-beanutils-java all 1.9.4-1 [232 kB] Get: 287 http://deb.debian.org/debian bookworm/main arm64 libcommons-codec-java all 1.15-1 [292 kB] Get: 288 http://deb.debian.org/debian bookworm/main arm64 libcommons-compress-java all 1.22-1 [615 kB] Get: 289 http://deb.debian.org/debian bookworm/main arm64 libcommons-lang-java all 2.6-10 [273 kB] Get: 290 http://deb.debian.org/debian bookworm/main arm64 libcommons-configuration-java all 1.10-6 [347 kB] Get: 291 http://deb.debian.org/debian bookworm/main arm64 libcommons-digester-java all 1.8.1-5 [168 kB] Get: 292 http://deb.debian.org/debian bookworm/main arm64 libcommons-jexl2-java all 2.1.1-6 [256 kB] Get: 293 http://deb.debian.org/debian bookworm/main arm64 libplexus-io-java all 3.3.1-2 [65.3 kB] Get: 294 http://deb.debian.org/debian bookworm/main arm64 libsnappy1v5 arm64 1.1.9-3 [25.4 kB] Get: 295 http://deb.debian.org/debian bookworm/main arm64 libsnappy-jni arm64 1.1.8.3-1 [7056 B] Get: 296 http://deb.debian.org/debian bookworm/main arm64 libsnappy-java all 1.1.8.3-1 [98.9 kB] Get: 297 http://deb.debian.org/debian bookworm/main arm64 libxz-java all 1.9-1 [143 kB] Get: 298 http://deb.debian.org/debian bookworm/main arm64 libplexus-archiver-java all 4.6.1-1 [187 kB] Get: 299 http://deb.debian.org/debian bookworm/main arm64 libmaven-archiver-java all 3.6.0-1 [25.1 kB] Get: 300 http://deb.debian.org/debian bookworm/main arm64 libmaven-jar-plugin-java all 3.3.0-2 [24.0 kB] Get: 301 http://deb.debian.org/debian bookworm/main arm64 libcommons-text-java all 1.10.0-1 [211 kB] Get: 302 http://deb.debian.org/debian bookworm/main arm64 libcommons-validator-java all 1:1.7-1 [181 kB] Get: 303 http://deb.debian.org/debian bookworm/main arm64 libcurl4-openssl-dev arm64 7.88.1-10+deb12u5 [476 kB] Get: 304 http://deb.debian.org/debian bookworm/main arm64 libcurlpp0 arm64 0.8.1-5.1 [25.2 kB] Get: 305 http://deb.debian.org/debian bookworm/main arm64 libcurlpp-dev arm64 0.8.1-5.1 [57.7 kB] Get: 306 http://deb.debian.org/debian bookworm/main arm64 libjaxen-java all 1.1.6-4 [214 kB] Get: 307 http://deb.debian.org/debian bookworm/main arm64 libdom4j-java all 2.1.3-2 [310 kB] Get: 308 http://deb.debian.org/debian bookworm/main arm64 libhttpcore-java all 4.4.16-1 [636 kB] Get: 309 http://deb.debian.org/debian bookworm/main arm64 libhttpclient-java all 4.5.14-1 [1247 kB] Get: 310 http://deb.debian.org/debian bookworm/main arm64 libdoxia-core-java all 1.12.0-1 [213 kB] Get: 311 http://deb.debian.org/debian bookworm/main arm64 libfontbox2-java all 2.0.27-2 [1510 kB] Get: 312 http://deb.debian.org/debian bookworm/main arm64 libqdox-java all 1.12.1-3 [172 kB] Get: 313 http://deb.debian.org/debian bookworm/main arm64 libfop-java all 1:2.8-2 [10.1 MB] Get: 314 http://deb.debian.org/debian bookworm/main arm64 libitext1-java all 1.4-7 [1257 kB] Get: 315 http://deb.debian.org/debian bookworm/main arm64 libxbean-reflect-java all 4.5-8 [133 kB] Get: 316 http://deb.debian.org/debian bookworm/main arm64 libplexus-container-default-java all 2.1.1-1 [193 kB] Get: 317 http://deb.debian.org/debian bookworm/main arm64 libdoxia-java all 1.12.0-1 [459 kB] Get: 318 http://deb.debian.org/debian bookworm/main arm64 libmaven-reporting-api-java all 3.1.1-1 [7240 B] Get: 319 http://deb.debian.org/debian bookworm/main arm64 libplexus-i18n-java all 1.0-beta-10-6 [13.4 kB] Get: 320 http://deb.debian.org/debian bookworm/main arm64 velocity all 1.7-6 [429 kB] Get: 321 http://deb.debian.org/debian bookworm/main arm64 libplexus-velocity-java all 1.2-3.1 [10.5 kB] Get: 322 http://deb.debian.org/debian bookworm/main arm64 liboro-java all 2.0.8a-14 [70.5 kB] Get: 323 http://deb.debian.org/debian bookworm/main arm64 libvelocity-tools-java all 2.0-8 [308 kB] Get: 324 http://deb.debian.org/debian bookworm/main arm64 libxml-commons-resolver1.1-java all 1.2-11 [98.3 kB] Get: 325 http://deb.debian.org/debian bookworm/main arm64 libxerces2-java all 2.12.2-1 [1440 kB] Get: 326 http://deb.debian.org/debian bookworm/main arm64 libxalan2-java all 2.7.2-4 [3419 kB] Get: 327 http://deb.debian.org/debian bookworm/main arm64 libdoxia-sitetools-java all 1.11.1-1 [202 kB] Get: 328 http://deb.debian.org/debian bookworm/main arm64 libel-api-java all 3.0.0-3 [64.9 kB] Get: 329 http://deb.debian.org/debian bookworm/main arm64 libevent-2.1-7 arm64 2.1.12-stable-8 [168 kB] Get: 330 http://deb.debian.org/debian bookworm/main arm64 libevent-core-2.1-7 arm64 2.1.12-stable-8 [124 kB] Get: 331 http://deb.debian.org/debian bookworm/main arm64 libevent-extra-2.1-7 arm64 2.1.12-stable-8 [101 kB] Get: 332 http://deb.debian.org/debian bookworm/main arm64 libevent-pthreads-2.1-7 arm64 2.1.12-stable-8 [53.7 kB] Get: 333 http://deb.debian.org/debian bookworm/main arm64 libevent-openssl-2.1-7 arm64 2.1.12-stable-8 [59.7 kB] Get: 334 http://deb.debian.org/debian bookworm/main arm64 libevent-dev arm64 2.1.12-stable-8 [302 kB] Get: 335 http://deb.debian.org/debian bookworm/main arm64 librdmacm1 arm64 44.0-2 [64.9 kB] Get: 336 http://deb.debian.org/debian bookworm/main arm64 libfabric1 arm64 1.17.0-3 [476 kB] Get: 337 http://deb.debian.org/debian bookworm/main arm64 libfmt9 arm64 9.1.0+ds1-2 [107 kB] Get: 338 http://deb.debian.org/debian bookworm/main arm64 libfmt-dev arm64 9.1.0+ds1-2 [171 kB] Get: 339 http://deb.debian.org/debian bookworm/main arm64 libgetopt-java all 1.0.14+dfsg-6 [25.7 kB] Get: 340 http://deb.debian.org/debian bookworm/main arm64 libgoogle-gson-java all 2.10-1 [261 kB] Get: 341 http://deb.debian.org/debian bookworm/main arm64 libmjson-java all 1.4.0-3 [60.4 kB] Get: 342 http://deb.debian.org/debian bookworm/main arm64 libmbedcrypto7 arm64 2.28.3-1 [263 kB] Get: 343 http://deb.debian.org/debian bookworm/main arm64 libmbedx509-1 arm64 2.28.3-1 [127 kB] Get: 344 http://deb.debian.org/debian bookworm/main arm64 libmbedtls14 arm64 2.28.3-1 [156 kB] Get: 345 http://deb.debian.org/debian bookworm/main arm64 ncbi-vdb-data all 3.0.2+dfsg-2 [73.3 kB] Get: 346 http://deb.debian.org/debian bookworm/main arm64 libncbi-vdb3 arm64 3.0.2+dfsg-2 [977 kB] Get: 347 http://deb.debian.org/debian bookworm/main arm64 libncbi-ngs3 arm64 3.0.3+dfsg-6~deb12u1 [141 kB] Get: 348 http://deb.debian.org/debian bookworm/main arm64 libngs-jni arm64 3.0.3+dfsg-6~deb12u1 [23.5 kB] Get: 349 http://deb.debian.org/debian bookworm/main arm64 libngs-java arm64 3.0.3+dfsg-6~deb12u1 [110 kB] Get: 350 http://deb.debian.org/debian bookworm/main arm64 librhino-java all 1.7.14-2.1 [1357 kB] Get: 351 http://deb.debian.org/debian bookworm/main arm64 libhtsjdk-java all 3.0.4+dfsg-2 [1813 kB] Get: 352 http://deb.debian.org/debian bookworm/main arm64 libhwloc15 arm64 2.9.0-1 [133 kB] Get: 353 http://deb.debian.org/debian bookworm/main arm64 libnuma1 arm64 2.0.16-1 [20.3 kB] Get: 354 http://deb.debian.org/debian bookworm/main arm64 libnuma-dev arm64 2.0.16-1 [36.0 kB] Get: 355 http://deb.debian.org/debian bookworm/main arm64 libltdl7 arm64 2.4.7-5 [392 kB] Get: 356 http://deb.debian.org/debian bookworm/main arm64 libltdl-dev arm64 2.4.7-5 [165 kB] Get: 357 http://deb.debian.org/debian bookworm/main arm64 libhwloc-dev arm64 2.9.0-1 [734 kB] Get: 358 http://deb.debian.org/debian bookworm/main arm64 libpciaccess0 arm64 0.17-2 [50.4 kB] Get: 359 http://deb.debian.org/debian bookworm/main arm64 libxnvctrl0 arm64 525.85.05-3~deb12u1 [13.4 kB] Get: 360 http://deb.debian.org/debian bookworm/main arm64 ocl-icd-libopencl1 arm64 2.3.1-1 [42.1 kB] Get: 361 http://deb.debian.org/debian bookworm/main arm64 libhwloc-plugins arm64 2.9.0-1 [17.2 kB] Get: 362 http://deb.debian.org/debian bookworm/main arm64 libnl-3-dev arm64 3.7.0-0.2+b1 [104 kB] Get: 363 http://deb.debian.org/debian bookworm/main arm64 libnl-route-3-dev arm64 3.7.0-0.2+b1 [200 kB] Get: 364 http://deb.debian.org/debian bookworm/main arm64 libibverbs-dev arm64 44.0-2 [613 kB] Get: 365 http://deb.debian.org/debian bookworm/main arm64 libjansi-java all 2.4.0-2 [105 kB] Get: 366 http://deb.debian.org/debian bookworm/main arm64 libjcommander-java all 1.71-4 [73.0 kB] Get: 367 http://deb.debian.org/debian bookworm/main arm64 libjsp-api-java all 2.3.4-3 [53.7 kB] Get: 368 http://deb.debian.org/debian bookworm/main arm64 libservlet-api-java all 4.0.1-2 [81.0 kB] Get: 369 http://deb.debian.org/debian bookworm/main arm64 libwebsocket-api-java all 1.1-2 [40.1 kB] Get: 370 http://deb.debian.org/debian bookworm/main arm64 libjetty9-java all 9.4.50-4+deb12u2 [2981 kB] Get: 371 http://deb.debian.org/debian bookworm/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 372 http://deb.debian.org/debian bookworm/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 373 http://deb.debian.org/debian bookworm/main arm64 libjson-simple-java all 2.3.0-1 [63.8 kB] Get: 374 http://deb.debian.org/debian bookworm/main arm64 libjsoup-java all 1.15.3-1 [431 kB] Get: 375 http://deb.debian.org/debian bookworm/main arm64 libjtidy-java all 7+svn20110807-5 [250 kB] Get: 376 http://deb.debian.org/debian bookworm/main arm64 liblightcouch-java all 0.2.0-1 [75.0 kB] Get: 377 http://deb.debian.org/debian bookworm/main arm64 libmongodb-java all 3.6.3-2 [1901 kB] Get: 378 http://deb.debian.org/debian bookworm/main arm64 liblog4j2-java all 2.19.0-2 [2310 kB] Get: 379 http://deb.debian.org/debian bookworm/main arm64 liblzma-dev arm64 5.4.1-0.2 [255 kB] Get: 380 http://deb.debian.org/debian bookworm/main arm64 libmaven-antrun-plugin-java all 3.1.0-1 [36.9 kB] Get: 381 http://deb.debian.org/debian bookworm/main arm64 libmaven-clean-plugin-java all 3.2.0-2 [32.2 kB] Get: 382 http://deb.debian.org/debian bookworm/main arm64 libmaven-common-artifact-filters-java all 3.3.2-1 [48.2 kB] Get: 383 http://deb.debian.org/debian bookworm/main arm64 libmaven-shared-incremental-java all 1.1-3 [9524 B] Get: 384 http://deb.debian.org/debian bookworm/main arm64 libplexus-compiler-java all 2.12.1-1 [99.8 kB] Get: 385 http://deb.debian.org/debian bookworm/main arm64 libqdox2-java all 2.0.3-1 [296 kB] Get: 386 http://deb.debian.org/debian bookworm/main arm64 libplexus-languages-java all 1.1.1-2 [47.3 kB] Get: 387 http://deb.debian.org/debian bookworm/main arm64 libmaven-compiler-plugin-java all 3.10.1-2 [59.0 kB] Get: 388 http://deb.debian.org/debian bookworm/main arm64 libplexus-build-api-java all 0.0.7-4 [10.3 kB] Get: 389 http://deb.debian.org/debian bookworm/main arm64 libmaven-filtering-java all 3.3.0-1 [50.2 kB] Get: 390 http://deb.debian.org/debian bookworm/main arm64 libmaven-reporting-impl-java all 3.2.0-2 [15.2 kB] Get: 391 http://deb.debian.org/debian bookworm/main arm64 libplexus-container-default1.5-java all 2.1.1-1 [4476 B] Get: 392 http://deb.debian.org/debian bookworm/main arm64 libplexus-ant-factory-java all 1.0~alpha2.1-4 [11.4 kB] Get: 393 http://deb.debian.org/debian bookworm/main arm64 libplexus-bsh-factory-java all 1.0~alpha7-5 [8360 B] Get: 394 http://deb.debian.org/debian bookworm/main arm64 libmaven-plugin-tools-java all 3.7.1-1 [265 kB] Get: 395 http://deb.debian.org/debian bookworm/main arm64 libmaven-reporting-exec-java all 1.6.0-1 [26.8 kB] Get: 396 http://deb.debian.org/debian bookworm/main arm64 libmaven-resources-plugin-java all 3.3.0-1 [28.4 kB] Get: 397 http://deb.debian.org/debian bookworm/main arm64 libmaven-site-plugin-java all 3.12.1-2 [107 kB] Get: 398 http://deb.debian.org/debian bookworm/main arm64 libmunge2 arm64 0.5.15-2 [18.8 kB] Get: 399 http://deb.debian.org/debian bookworm/main arm64 libmuparserx4.0.11 arm64 4.0.11-2 [167 kB] Get: 400 http://deb.debian.org/debian bookworm/main arm64 libmuparserx-dev arm64 4.0.11-2 [38.5 kB] Get: 401 http://deb.debian.org/debian bookworm/main arm64 libpmix2 arm64 4.2.2-1+deb12u1 [554 kB] Get: 402 http://deb.debian.org/debian bookworm/main arm64 libucx0 arm64 1.13.1-1 [734 kB] Get: 403 http://deb.debian.org/debian bookworm/main arm64 libopenmpi3 arm64 4.1.4-3+b1 [2161 kB] Get: 404 http://deb.debian.org/debian bookworm/main arm64 openmpi-common all 4.1.4-3 [167 kB] Get: 405 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB] Get: 406 http://deb.debian.org/debian bookworm/main arm64 libpmix-dev arm64 4.2.2-1+deb12u1 [884 kB] Get: 407 http://deb.debian.org/debian bookworm/main arm64 openmpi-bin arm64 4.1.4-3+b1 [225 kB] Get: 408 http://deb.debian.org/debian bookworm/main arm64 libopenmpi-dev arm64 4.1.4-3+b1 [970 kB] Get: 409 http://deb.debian.org/debian bookworm/main arm64 libprotobuf32 arm64 3.21.12-3 [821 kB] Get: 410 http://deb.debian.org/debian bookworm/main arm64 libprotobuf-lite32 arm64 3.21.12-3 [240 kB] Get: 411 http://deb.debian.org/debian bookworm/main arm64 libprotobuf-dev arm64 3.21.12-3 [1219 kB] Get: 412 http://deb.debian.org/debian bookworm/main arm64 libprotobuf-java all 3.21.12-3 [1257 kB] Get: 413 http://deb.debian.org/debian bookworm/main arm64 libprotobuf-java-format-java all 1.3-1.1 [90.3 kB] Get: 414 http://deb.debian.org/debian bookworm/main arm64 libprotoc32 arm64 3.21.12-3 [718 kB] Get: 415 http://deb.debian.org/debian bookworm/main arm64 libspdlog1.10 arm64 1:1.10.0+ds-0.4 [119 kB] Get: 416 http://deb.debian.org/debian bookworm/main arm64 libspdlog-dev arm64 1:1.10.0+ds-0.4 [209 kB] Get: 417 http://deb.debian.org/debian bookworm/main arm64 libssl-dev arm64 3.0.11-1~deb12u2 [2302 kB] Get: 418 http://deb.debian.org/debian bookworm/main arm64 libsurefire-java all 2.22.3-2 [1169 kB] Get: 419 http://deb.debian.org/debian bookworm/main arm64 libwagon-file-java all 3.5.3-1 [8388 B] Get: 420 http://deb.debian.org/debian bookworm/main arm64 libwagon-http-shaded-java all 3.5.3-1 [1341 kB] Get: 421 http://deb.debian.org/debian bookworm/main arm64 libxml2-utils arm64 2.9.14+dfsg-1.3~deb12u1 [97.2 kB] Get: 422 http://deb.debian.org/debian bookworm/main arm64 maven all 3.8.7-1 [18.9 kB] Get: 423 http://deb.debian.org/debian bookworm/main arm64 maven-repo-helper all 1.11 [142 kB] Get: 424 http://deb.debian.org/debian bookworm/main arm64 maven-debian-helper all 2.6.3 [108 kB] Get: 425 http://deb.debian.org/debian bookworm/main arm64 protobuf-compiler arm64 3.21.12-3 [83.9 kB] Get: 426 http://deb.debian.org/debian bookworm/main arm64 rapidjson-dev all 1.1.0+dfsg2-7.1 [97.7 kB] Get: 427 http://deb.debian.org/debian bookworm/main arm64 testng all 6.9.12-4 [795 kB] Get: 428 http://deb.debian.org/debian bookworm/main arm64 uuid-dev arm64 2.38.1-5+b1 [40.5 kB] Fetched 319 MB in 11s (28.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19578 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.2-6) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.5.0-1_arm64.deb ... Unpacking libexpat1:arm64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_arm64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:arm64 (3.11.2-6) ... Setting up libexpat1:arm64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19894 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_arm64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../3-libreadline8_8.2-1.3_arm64.deb ... Unpacking libreadline8:arm64 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:arm64. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_arm64.deb ... Unpacking libpython3.11-stdlib:arm64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_arm64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20328 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_arm64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package netbase. Preparing to unpack .../002-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../003-libproc2-0_2%3a4.0.2-3_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../004-procps_2%3a4.0.2-3_arm64.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../005-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package openssl. Preparing to unpack .../006-openssl_3.0.11-1~deb12u2_arm64.deb ... Unpacking openssl (3.0.11-1~deb12u2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../007-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../008-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../009-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../010-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../011-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../012-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../013-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../014-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../015-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../016-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../017-libbsd0_0.11.7-2_arm64.deb ... Unpacking libbsd0:arm64 (0.11.7-2) ... Selecting previously unselected package libedit2:arm64. Preparing to unpack .../018-libedit2_3.1-20221030-2_arm64.deb ... Unpacking libedit2:arm64 (3.1-20221030-2) ... Selecting previously unselected package libcbor0.8:arm64. Preparing to unpack .../019-libcbor0.8_0.8.0-2+b1_arm64.deb ... Unpacking libcbor0.8:arm64 (0.8.0-2+b1) ... Selecting previously unselected package libfido2-1:arm64. Preparing to unpack .../020-libfido2-1_1.12.0-2+b1_arm64.deb ... Unpacking libfido2-1:arm64 (1.12.0-2+b1) ... Selecting previously unselected package openssh-client. Preparing to unpack .../021-openssh-client_1%3a9.2p1-2+deb12u2_arm64.deb ... Unpacking openssh-client (1:9.2p1-2+deb12u2) ... Selecting previously unselected package hicolor-icon-theme. Preparing to unpack .../022-hicolor-icon-theme_0.17-2_all.deb ... Unpacking hicolor-icon-theme (0.17-2) ... Selecting previously unselected package libgdk-pixbuf2.0-common. Preparing to unpack .../023-libgdk-pixbuf2.0-common_2.42.10+dfsg-1_all.deb ... Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-1) ... Selecting previously unselected package libglib2.0-0:arm64. Preparing to unpack .../024-libglib2.0-0_2.74.6-2_arm64.deb ... Unpacking libglib2.0-0:arm64 (2.74.6-2) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../025-libicu72_72.1-3_arm64.deb ... Unpacking libicu72:arm64 (72.1-3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../026-libxml2_2.9.14+dfsg-1.3~deb12u1_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.3~deb12u1) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../027-shared-mime-info_2.2-1_arm64.deb ... Unpacking shared-mime-info (2.2-1) ... Selecting previously unselected package libjpeg62-turbo:arm64. Preparing to unpack .../028-libjpeg62-turbo_1%3a2.1.5-2_arm64.deb ... Unpacking libjpeg62-turbo:arm64 (1:2.1.5-2) ... Selecting previously unselected package libpng16-16:arm64. Preparing to unpack .../029-libpng16-16_1.6.39-2_arm64.deb ... Unpacking libpng16-16:arm64 (1.6.39-2) ... Selecting previously unselected package libdeflate0:arm64. Preparing to unpack .../030-libdeflate0_1.14-1_arm64.deb ... Unpacking libdeflate0:arm64 (1.14-1) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../031-libjbig0_2.1-6.1_arm64.deb ... Unpacking libjbig0:arm64 (2.1-6.1) ... Selecting previously unselected package liblerc4:arm64. Preparing to unpack .../032-liblerc4_4.0.0+ds-2_arm64.deb ... Unpacking liblerc4:arm64 (4.0.0+ds-2) ... Selecting previously unselected package libwebp7:arm64. Preparing to unpack .../033-libwebp7_1.2.4-0.2+deb12u1_arm64.deb ... Unpacking libwebp7:arm64 (1.2.4-0.2+deb12u1) ... Selecting previously unselected package libtiff6:arm64. Preparing to unpack .../034-libtiff6_4.5.0-6+deb12u1_arm64.deb ... Unpacking libtiff6:arm64 (4.5.0-6+deb12u1) ... Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64. Preparing to unpack .../035-libgdk-pixbuf-2.0-0_2.42.10+dfsg-1+b1_arm64.deb ... Unpacking libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-1+b1) ... Selecting previously unselected package gtk-update-icon-cache. Preparing to unpack .../036-gtk-update-icon-cache_3.24.38-2~deb12u1_arm64.deb ... Unpacking gtk-update-icon-cache (3.24.38-2~deb12u1) ... Selecting previously unselected package adwaita-icon-theme. 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Setting up libavahi-common3:arm64 (0.8-10) ... Setting up libncbi-vdb3:arm64 (3.0.2+dfsg-2) ... Setting up libcommons-logging-java (1.2-3) ... Setting up libevent-openssl-2.1-7:arm64 (2.1.12-stable-8) ... Setting up libnet-http-perl (6.22-1) ... Setting up libsisu-inject-java (0.3.4-2) ... Setting up libnss3:arm64 (2:3.87.1-1) ... Setting up libgfortran-12-dev:arm64 (12.2.0-14) ... Setting up libxcb-shm0:arm64 (1.15-1) ... Setting up libdevel-callchecker-perl:arm64 (0.008-2) ... Setting up libcommons-lang-java (2.6-10) ... Setting up libldap-2.5-0:arm64 (2.5.13+dfsg-5) ... Setting up libplexus-cipher-java (2.0-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnuma-dev:arm64 (2.0.16-1) ... Setting up libnl-route-3-200:arm64 (3.7.0-0.2+b1) ... Setting up libprotobuf-dev:arm64 (3.21.12-3) ... Setting up libxcb-present0:arm64 (1.15-1) ... Setting up dh-autoreconf (20) ... Setting up patchutils (0.4.2-1) ... Setting up libcommons-jexl2-java (2.1.1-6) ... Setting up libltdl-dev:arm64 (2.4.7-5) ... Setting up libthai0:arm64 (0.1.29-1) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libsisu-plexus-java (0.3.4-3) ... Setting up gfortran-12 (12.2.0-14) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:arm64 (2.12.1+dfsg-5) ... Setting up libxcb-sync1:arm64 (1.15-1) ... Setting up libxalan2-java (2.7.2-4) ... Setting up testng (6.9.12-4) ... Setting up shared-mime-info (2.2-1) ... Setting up libevent-dev (2.1.12-stable-8) ... Setting up libfmt-dev:arm64 (9.1.0+ds1-2) ... Setting up libcommons-lang3-java (3.12.0-2) ... Setting up libxcb-dri2-0:arm64 (1.15-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libdrm2:arm64 (2.4.114-1+b1) ... Setting up dwz (0.15-1) ... Setting up libnl-3-dev:arm64 (3.7.0-0.2+b1) ... Setting up libmaven-common-artifact-filters-java (3.3.2-1) ... Setting up groff-base (1.22.4-10) ... Setting up libxcb-randr0:arm64 (1.15-1) ... Setting up libhtml-parser-perl:arm64 (3.81-1) ... Setting up libllvm15:arm64 (1:15.0.6-4+b1) ... Setting up gpgconf (2.2.40-1.1) ... Setting up libcommons-beanutils-java (1.9.4-1) ... Setting up libcurl4:arm64 (7.88.1-10+deb12u5) ... Setting up libplexus-sec-dispatcher-java (2.0-3) ... Setting up libx11-6:arm64 (2:1.8.4-2+deb12u2) ... Setting up libharfbuzz0b:arm64 (6.0.0+dfsg-3) ... Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-1+b1) ... Setting up libhwloc-dev:arm64 (2.9.0-1) ... Setting up libsnappy-java (1.1.8.3-1) ... Setting up libfontconfig1:arm64 (2.14.1-4) ... Setting up ca-certificates-java (20230710~deb12u1) ... No JRE found. Skipping Java certificates setup. Setting up libcommons-configuration-java (1.10-6) ... Setting up libwagon-file-java (3.5.3-1) ... Setting up libxml2-utils (2.9.14+dfsg-1.3~deb12u1) ... Setting up libcommons-codec-java (1.15-1) ... Setting up libxcomposite1:arm64 (1:0.4.5-1) ... Setting up libavahi-client3:arm64 (0.8-10) ... Setting up libio-socket-ssl-perl (2.081-2) ... Setting up gpg (2.2.40-1.1) ... Setting up gnupg-utils (2.2.40-1.1) ... Setting up libhttp-message-perl (6.44-1) ... Setting up libdrm-amdgpu1:arm64 (2.4.114-1+b1) ... Setting up libncbi-ngs3:arm64 (3.0.3+dfsg-6~deb12u1) ... Setting up libxcb-dri3-0:arm64 (1.15-1) ... Setting up gtk-update-icon-cache (3.24.38-2~deb12u1) ... Setting up libcurlpp0:arm64 (0.8.1-5.1) ... Setting up libx11-xcb1:arm64 (2:1.8.4-2+deb12u2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up velocity (1.7-6) ... Setting up libibverbs1:arm64 (44.0-2) ... Setting up fontconfig (2.14.1-4) ... Regenerating fonts cache... done. Setting up libngs-jni:arm64 (3.0.3+dfsg-6~deb12u1) ... Setting up libdrm-nouveau2:arm64 (2.4.114-1+b1) ... Setting up libxdamage1:arm64 (1:1.1.6-1) ... Setting up gpg-agent (2.2.40-1.1) ... Setting up libxrender1:arm64 (1:0.9.10-1.1) ... Setting up libcommons-compress-java (1.22-1) ... Setting up ibverbs-providers:arm64 (44.0-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libcommons-io-java (2.11.0-2) ... Setting up libdrm-radeon1:arm64 (2.4.114-1+b1) ... Setting up libcommons-digester-java (1.8.1-5) ... Setting up openssh-client (1:9.2p1-2+deb12u2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libpython3.11-stdlib:arm64 (3.11.2-6) ... Setting up libparams-classify-perl:arm64 (0.015-2+b1) ... Setting up gpgsm (2.2.40-1.1) ... Setting up libpango-1.0-0:arm64 (1.50.12+ds-1) ... Setting up libgl1-mesa-dri:arm64 (22.3.6-1+deb12u1) ... Setting up libxext6:arm64 (2:1.3.4-1+b1) ... Setting up libxmlgraphics-commons-java (2.8-2) ... Setting up libspdlog-dev:arm64 (1:1.10.0+ds-0.4) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:arm64 (1.16.0-7) ... Setting up libxxf86vm1:arm64 (1:1.1.4-1+b2) ... Setting up libxnvctrl0:arm64 (525.85.05-3~deb12u1) ... Setting up libnl-route-3-dev:arm64 (3.7.0-0.2+b1) ... Setting up dirmngr (2.2.40-1.1) ... Setting up libmaven-filtering-java (3.3.0-1) ... Setting up libmaven-resolver-java (1.6.3-1) ... Setting up adwaita-icon-theme (43-1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libmodule-runtime-perl (0.016-2) ... Setting up libxfixes3:arm64 (1:6.0.0-2) ... Setting up libcurl4-openssl-dev:arm64 (7.88.1-10+deb12u5) ... Setting up libxinerama1:arm64 (2:1.1.4-3) ... Setting up libxrandr2:arm64 (2:1.5.2-2+b1) ... Setting up libcurlpp-dev:arm64 (0.8.1-5.1) ... Setting up gpg-wks-server (2.2.40-1.1) ... Setting up libcups2:arm64 (2.4.2-3+deb12u5) ... Setting up libhttpclient-java (4.5.14-1) ... Setting up cmake (3.25.1-1) ... Setting up liblightcouch-java (0.2.0-1) ... Setting up libmaven-shared-utils-java (3.3.4-1) ... Setting up libngs-java:arm64 (3.0.3+dfsg-6~deb12u1) ... Setting up libpangoft2-1.0-0:arm64 (1.50.12+ds-1) ... Setting up libmaven-resources-plugin-java (3.3.0-1) ... Setting up libhtsjdk-java (3.0.4+dfsg-2) ... Setting up libpangocairo-1.0-0:arm64 (1.50.12+ds-1) ... Setting up libpython3-stdlib:arm64 (3.11.2-1+b1) ... Setting up librdmacm1:arm64 (44.0-2) ... Setting up python3.11 (3.11.2-6) ... Setting up libucx0:arm64 (1.13.1-1) ... Setting up libplexus-io-java (3.3.1-2) ... Setting up libglx-mesa0:arm64 (22.3.6-1+deb12u1) ... Setting up libxi6:arm64 (2:1.8-1+b1) ... Setting up gpg-wks-client (2.2.40-1.1) ... Setting up libglx0:arm64 (1.6.0-1) ... Setting up libcommons-validator-java (1:1.7-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libxtst6:arm64 (2:1.2.3-1.1) ... Setting up libbatik-java (1.16+dfsg-1+deb12u1) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblog4j2-java (2.19.0-2) ... Setting up libxcursor1:arm64 (1:1.2.1-1) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up libibverbs-dev:arm64 (44.0-2) ... Setting up libhwloc-plugins:arm64 (2.9.0-1) ... Setting up libgl1:arm64 (1.6.0-1) ... Setting up libmaven-clean-plugin-java (3.2.0-2) ... Setting up openjdk-17-jre-headless:arm64 (17.0.10+7-1~deb12u1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up gnupg (2.2.40-1.1) ... Setting up libplexus-archiver-java (4.6.1-1) ... Setting up libfabric1:arm64 (1.17.0-3) ... Setting up libfop-java (1:2.8-2) ... Setting up libpmix2:arm64 (4.2.2-1+deb12u1) ... Setting up libgtk2.0-0:arm64 (2.24.33-2) ... Setting up libopenmpi3:arm64 (4.1.4-3+b1) ... Setting up libmaven-archiver-java (3.6.0-1) ... Setting up libpmix-dev:arm64 (4.2.2-1+deb12u1) ... Setting up openmpi-bin (4.1.4-3+b1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:arm64 (4.1.4-3+b1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/openmpi/include to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode Setting up liberror-prone-java (2.18.0-1) ... Setting up libwww-perl (6.68-1) ... Setting up devscripts (2.23.4+deb12u1) ... Setting up libguava-java (31.1-1) ... Setting up javahelper (0.78) ... Setting up libplexus-container-default-java (2.1.1-1) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up libguice-java (4.2.3-2) ... Setting up libplexus-i18n-java (1.0-beta-10-6) ... Setting up libplexus-container-default1.5-java (2.1.1-1) ... Setting up libplexus-velocity-java (1.2-3.1) ... Setting up libmaven3-core-java (3.8.7-1) ... Setting up libmaven-shared-incremental-java (1.1-3) ... Setting up libmaven-shared-io-java (3.0.0-4) ... Setting up libplexus-bsh-factory-java (1.0~alpha7-5) ... Setting up libplexus-compiler-java (2.12.1-1) ... Setting up libmaven-compiler-plugin-java (3.10.1-2) ... Setting up libmaven-file-management-java (3.0.0-1) ... Setting up libbuild-helper-maven-plugin-java (3.3.0-1) ... Setting up libmaven-jar-plugin-java (3.3.0-2) ... Setting up libcommons-text-java (1.10.0-1) ... Setting up libdoxia-core-java (1.12.0-1) ... Setting up libdoxia-java (1.12.0-1) ... Setting up libmaven-reporting-api-java (3.1.1-1) ... Setting up libmaven-reporting-exec-java (1.6.0-1) ... Processing triggers for libc-bin (2.36-9+deb12u4) ... Processing triggers for ca-certificates-java (20230710~deb12u1) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068_2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:E-Tugra_Global_Root_CA_ECC_v3.pem Adding debian:E-Tugra_Global_Root_CA_RSA_v3.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up maven-repo-helper (1.11) ... Setting up maven (3.8.7-1) ... update-alternatives: using /usr/share/maven/bin/mvn to provide /usr/bin/mvn (mvn) in auto mode Setting up openjdk-17-jdk-headless:arm64 (17.0.10+7-1~deb12u1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up ant (1.10.13-1) ... Setting up junit4 (4.13.2-3) ... Setting up default-jre-headless (2:1.17-74) ... Setting up openjdk-17-jre:arm64 (17.0.10+7-1~deb12u1) ... Setting up default-jre (2:1.17-74) ... Setting up openjdk-17-jdk:arm64 (17.0.10+7-1~deb12u1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up libmaven-antrun-plugin-java (3.1.0-1) ... Setting up libplexus-ant-factory-java (1.0~alpha2.1-4) ... Setting up default-jdk-headless (2:1.17-74) ... Setting up junit5 (5.9.2-1) ... Setting up default-jdk (2:1.17-74) ... Processing triggers for sgml-base (1.31) ... Setting up libvelocity-tools-java (2.0-8) ... Setting up libdoxia-sitetools-java (1.11.1-1) ... Setting up libmaven-site-plugin-java (3.12.1-2) ... Setting up libmaven-reporting-impl-java (3.2.0-2) ... Setting up libmaven-plugin-tools-java (3.7.1-1) ... Setting up libsurefire-java (2.22.3-2) ... Setting up maven-debian-helper (2.6.3) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20230710~deb12u1) ... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/genomicsdb-1.4.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../genomicsdb_1.4.4-3_source.changes dpkg-buildpackage: info: source package genomicsdb dpkg-buildpackage: info: source version 1.4.4-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Pierre Gruet dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=cmake --with javahelper debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4' # Removing the files we provided manually for the build of the component if [ -e genomicsdb-htslib/CMakeLists.txt ]; then rm genomicsdb-htslib/CMakeLists.txt; fi if [ -e genomicsdb-htslib/config.h ]; then rm genomicsdb-htslib/config.h; fi if [ -e genomicsdb-htslib/version.h ]; then rm genomicsdb-htslib/version.h; fi dh_auto_clean dh_auto_clean --buildsystem=maven bash -c "for dir in \$(find . -name target -type d); do if [ -f \$(echo \$dir | sed -e s/target\$/pom.xml/) ]; then rm -Rf \$dir; fi done" mh_unpatchpoms -plibgenomicsdb-java # Removing the debian/maven.properties file we setup during configure step. if [ -e debian/maven.properties ]; then rm debian/maven.properties; fi # Removing the patched pom.xml file. if [ -e pom.xml.old ]; then mv pom.xml.old pom.xml; fi make[1]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4' dh_autoreconf_clean -O--buildsystem=cmake jh_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake --with javahelper dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4' # Preparing the build of the htslib component. cp debian/htslibComponentFiles/* genomicsdb-htslib/ echo '#define HTS_VERSION_TEXT ""' > genomicsdb-htslib/version.h # Configuring the C++ part using CMake. dh_auto_configure -- \ -DBUILD_JAVA:BOOL=False \ -DCMAKE_INSTALL_PREFIX:PATH=/usr \ -DJAVA_HOME:PATH=/usr/lib/jvm/default-java \ -DPROTOBUF_ROOT_DIR:PATH=/usr \ -DCMAKE_LIBRARY_ARCHITECTURE:STRING=aarch64-linux-gnu \ -DVERSION=1.4.4 \ -DSOVERSION=0 cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DBUILD_JAVA:BOOL=False -DCMAKE_INSTALL_PREFIX:PATH=/usr -DJAVA_HOME:PATH=/usr/lib/jvm/default-java -DPROTOBUF_ROOT_DIR:PATH=/usr -DCMAKE_LIBRARY_ARCHITECTURE:STRING=aarch64-linux-gnu -DVERSION=1.4.4 -DSOVERSION=0 .. -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found BZip2: /usr/lib/aarch64-linux-gnu/libbz2.so (found version "1.0.8") -- Looking for BZ2_bzCompressInit -- Looking for BZ2_bzCompressInit - found -- Found CURL: /usr/lib/aarch64-linux-gnu/libcurl.so (found version "7.88.1") -- Looking for lzma_auto_decoder in /usr/lib/aarch64-linux-gnu/liblzma.so -- Looking for lzma_auto_decoder in /usr/lib/aarch64-linux-gnu/liblzma.so - found -- Looking for lzma_easy_encoder in /usr/lib/aarch64-linux-gnu/liblzma.so -- Looking for lzma_easy_encoder in /usr/lib/aarch64-linux-gnu/liblzma.so - found -- Looking for lzma_lzma_preset in /usr/lib/aarch64-linux-gnu/liblzma.so -- Looking for lzma_lzma_preset in /usr/lib/aarch64-linux-gnu/liblzma.so - found -- Found LibLZMA: /usr/lib/aarch64-linux-gnu/liblzma.so (found version "5.4.1") -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.2.13") -- Found libuuid: /usr/include -- Found OpenSSL: /usr/lib/aarch64-linux-gnu/libcrypto.so (found version "3.0.11") -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Performing Test CXX_2011_FOUND -- Performing Test CXX_2011_FOUND - Success -- Compiler supports C++ 2011. -- The TileDB library is compiled with verbosity. -- CMAKE_BUILD_TYPE=None -- Performing Test test_cpp_2011 -- Performing Test test_cpp_2011 - Success -- Performing Test test_stack_protector_strong -- Performing Test test_stack_protector_strong - Success -- Found MPI_C: /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Performing Test OPENMPV4_FOUND -- Performing Test OPENMPV4_FOUND - Success -- Performing Test STRING_VIEW_FOUND -- Performing Test STRING_VIEW_FOUND - Success -- string_view found -- RapidJSON found. Headers: /usr/include -- Found Spdlog: /usr/include -- Try finding Protobuf Library -- Could not find libcsv headers and/or libraries (missing: LIBCSV_LIBRARY LIBCSV_INCLUDE_DIR) -- Could not find safestring headers and/or libraries (missing: SAFESTRINGLIB_INCLUDE_DIR SAFESTRINGLIB_LIBRARY) -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4' debian/rules override_dh_auto_configure-indep make[1]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4' # Preparing the build of the htslib component. cp debian/htslibComponentFiles/* genomicsdb-htslib/ echo '#define HTS_VERSION_TEXT ""' > genomicsdb-htslib/version.h # Configuring the C++ part using CMake. dh_auto_configure -- \ -DBUILD_JAVA:BOOL=False \ -DCMAKE_INSTALL_PREFIX:PATH=/usr \ -DJAVA_HOME:PATH=/usr/lib/jvm/default-java \ -DPROTOBUF_ROOT_DIR:PATH=/usr \ -DCMAKE_LIBRARY_ARCHITECTURE:STRING=aarch64-linux-gnu \ -DVERSION=1.4.4 \ -DSOVERSION=0 cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DBUILD_JAVA:BOOL=False -DCMAKE_INSTALL_PREFIX:PATH=/usr -DJAVA_HOME:PATH=/usr/lib/jvm/default-java -DPROTOBUF_ROOT_DIR:PATH=/usr -DCMAKE_LIBRARY_ARCHITECTURE:STRING=aarch64-linux-gnu -DVERSION=1.4.4 -DSOVERSION=0 .. -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Compiler supports C++ 2011. -- The TileDB library is compiled with verbosity. -- CMAKE_BUILD_TYPE=None -- string_view found -- RapidJSON found. Headers: /usr/include -- Try finding Protobuf Library -- Could not find libcsv headers and/or libraries (missing: LIBCSV_LIBRARY LIBCSV_INCLUDE_DIR) -- Could not find safestring headers and/or libraries (missing: SAFESTRINGLIB_INCLUDE_DIR SAFESTRINGLIB_LIBRARY) -- Configuring done -- Generating done -- Build files have been written to: /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu # Configuring the Java part using Maven. # First we put the arch triplet in d/maven.properties for the tests. echo "build.triplet=aarch64-linux-gnu" > debian/maven.properties mv pom.xml pom.xml.old sed 's/\${genomicsdb\.version}/1.4.4/; s,\${protoc\.filepath},/usr/bin/protoc,' pom.xml.old > pom.xml dh_auto_configure --buildsystem=maven skip faking of existing gnu-getopt:getopt::debian mh_patchpoms -plibgenomicsdb-java --debian-build --keep-pom-version --maven-repo=/build/reproducible-path/genomicsdb-1.4.4/debian/maven-repo make[1]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4' jh_linkjars -O--buildsystem=cmake debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4' dh_auto_build cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/genomicsdb-1.4.4 -B/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/build.make genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/depend make -f genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build.make genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/depend make -f CMakeFiles/protobuf_ep.dir/build.make CMakeFiles/protobuf_ep.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/CMakeFiles/protobuf_ep.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/build.make genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f CMakeFiles/protobuf_ep.dir/build.make CMakeFiles/protobuf_ep.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'CMakeFiles/protobuf_ep.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build.make genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 0%] Built target protobuf_ep [ 0%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/kfunc.c.o make -f src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build.make src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/src/resources /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/DependInfo.cmake --color= [ 0%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/kfunc.c.o -MF CMakeFiles/genomicsdb-hts.dir/kfunc.c.o.d -o CMakeFiles/genomicsdb-hts.dir/kfunc.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/kfunc.c [ 3%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/kstring.c.o [ 3%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_iterator.cc.o [ 3%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/array/array.cc cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_iterator.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_iterator.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/array/array_iterator.cc [ 3%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o [ 3%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_read_state.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_read_state.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_read_state.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_read_state.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/array/array_read_state.cc cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/kstring.c.o -MF CMakeFiles/genomicsdb-hts.dir/kstring.c.o.d -o CMakeFiles/genomicsdb-hts.dir/kstring.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/kstring.c [ 3%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/knetfile.c.o [ 3%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/bcf_sr_sort.c.o [ 3%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/bgzf.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/array/array_schema.cc cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/array/array_sorted_read_state.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/knetfile.c.o -MF CMakeFiles/genomicsdb-hts.dir/knetfile.c.o.d -o CMakeFiles/genomicsdb-hts.dir/knetfile.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/knetfile.c [ 3%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o make -f src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build.make src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/array/array_sorted_write_state.cc make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/bcf_sr_sort.c.o -MF CMakeFiles/genomicsdb-hts.dir/bcf_sr_sort.c.o.d -o CMakeFiles/genomicsdb-hts.dir/bcf_sr_sort.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/bcf_sr_sort.c cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/bgzf.c.o -MF CMakeFiles/genomicsdb-hts.dir/bgzf.c.o.d -o CMakeFiles/genomicsdb-hts.dir/bgzf.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/bgzf.c [ 3%] Generating source/header files from .proto files cd /build/reproducible-path/genomicsdb-1.4.4/src/resources && /usr/bin/protoc --cpp_out=/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources genomicsdb_coordinates.proto genomicsdb_callsets_mapping.proto genomicsdb_export_config.proto genomicsdb_import_config.proto genomicsdb_vid_mapping.proto [ 4%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/errmod.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/errmod.c.o -MF CMakeFiles/genomicsdb-hts.dir/errmod.c.o.d -o CMakeFiles/genomicsdb-hts.dir/errmod.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/errmod.c [ 4%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/faidx.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/faidx.c.o -MF CMakeFiles/genomicsdb-hts.dir/faidx.c.o.d -o CMakeFiles/genomicsdb-hts.dir/faidx.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/faidx.c [ 4%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/header.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/header.c.o -MF CMakeFiles/genomicsdb-hts.dir/header.c.o.d -o CMakeFiles/genomicsdb-hts.dir/header.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/header.c make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 4%] Built target PROTOBUF_GENERATED_CXX_TARGET [ 5%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hfile.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hfile.c.o -MF CMakeFiles/genomicsdb-hts.dir/hfile.c.o.d -o CMakeFiles/genomicsdb-hts.dir/hfile.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/hfile.c [ 5%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hfile_libcurl.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hfile_libcurl.c.o -MF CMakeFiles/genomicsdb-hts.dir/hfile_libcurl.c.o.d -o CMakeFiles/genomicsdb-hts.dir/hfile_libcurl.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/hfile_libcurl.c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/hfile_libcurl.c: In function 'libcurl_open': /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/hfile_libcurl.c:1335:9: warning: 'CURLINFO_CONTENT_LENGTH_DOWNLOAD' is deprecated: since 7.55.0. Use CURLINFO_CONTENT_LENGTH_DOWNLOAD_T [-Wdeprecated-declarations] 1335 | if (curl_easy_getinfo(fp->easy, CURLINFO_CONTENT_LENGTH_DOWNLOAD, | ^~ In file included from /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/hfile_libcurl.c:47: /usr/include/aarch64-linux-gnu/curl/curl.h:2858:3: note: declared here 2858 | CURLINFO_CONTENT_LENGTH_DOWNLOAD | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hfile_net.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hfile_net.c.o -MF CMakeFiles/genomicsdb-hts.dir/hfile_net.c.o.d -o CMakeFiles/genomicsdb-hts.dir/hfile_net.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/hfile_net.c [ 6%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hts.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hts.c.o -MF CMakeFiles/genomicsdb-hts.dir/hts.c.o.d -o CMakeFiles/genomicsdb-hts.dir/hts.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/hts.c [ 6%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hts_os.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hts_os.c.o -MF CMakeFiles/genomicsdb-hts.dir/hts_os.c.o.d -o CMakeFiles/genomicsdb-hts.dir/hts_os.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/hts_os.c [ 6%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/md5.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/md5.c.o -MF CMakeFiles/genomicsdb-hts.dir/md5.c.o.d -o CMakeFiles/genomicsdb-hts.dir/md5.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/md5.c [ 6%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/multipart.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/multipart.c.o -MF CMakeFiles/genomicsdb-hts.dir/multipart.c.o.d -o CMakeFiles/genomicsdb-hts.dir/multipart.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/multipart.c [ 7%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/probaln.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/probaln.c.o -MF CMakeFiles/genomicsdb-hts.dir/probaln.c.o.d -o CMakeFiles/genomicsdb-hts.dir/probaln.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/probaln.c [ 7%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/realn.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/realn.c.o -MF CMakeFiles/genomicsdb-hts.dir/realn.c.o.d -o CMakeFiles/genomicsdb-hts.dir/realn.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/realn.c [ 7%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/regidx.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/regidx.c.o -MF CMakeFiles/genomicsdb-hts.dir/regidx.c.o.d -o CMakeFiles/genomicsdb-hts.dir/regidx.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/regidx.c [ 8%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/region.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/region.c.o -MF CMakeFiles/genomicsdb-hts.dir/region.c.o.d -o CMakeFiles/genomicsdb-hts.dir/region.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/region.c [ 8%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/sam.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/sam.c.o -MF CMakeFiles/genomicsdb-hts.dir/sam.c.o.d -o CMakeFiles/genomicsdb-hts.dir/sam.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/sam.c [ 8%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/synced_bcf_reader.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/synced_bcf_reader.c.o -MF CMakeFiles/genomicsdb-hts.dir/synced_bcf_reader.c.o.d -o CMakeFiles/genomicsdb-hts.dir/synced_bcf_reader.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/synced_bcf_reader.c [ 9%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o -MF CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o.d -o CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/vcf_sweep.c [ 9%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/tbx.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/tbx.c.o -MF CMakeFiles/genomicsdb-hts.dir/tbx.c.o.d -o CMakeFiles/genomicsdb-hts.dir/tbx.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/tbx.c [ 9%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/textutils.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/textutils.c.o -MF CMakeFiles/genomicsdb-hts.dir/textutils.c.o.d -o CMakeFiles/genomicsdb-hts.dir/textutils.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/textutils.c [ 9%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/c_api/tiledb.cc [ 10%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/thread_pool.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/thread_pool.c.o -MF CMakeFiles/genomicsdb-hts.dir/thread_pool.c.o.d -o CMakeFiles/genomicsdb-hts.dir/thread_pool.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/thread_pool.c [ 10%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcf.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcf.c.o -MF CMakeFiles/genomicsdb-hts.dir/vcf.c.o.d -o CMakeFiles/genomicsdb-hts.dir/vcf.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/vcf.c [ 10%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o -MF CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o.d -o CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/vcfutils.c [ 11%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/cram/cram_codecs.c [ 11%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/cram/cram_decode.c [ 11%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/cram/cram_encode.c [ 12%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/cram/cram_external.c [ 13%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb_utils.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb_utils.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb_utils.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb_utils.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/c_api/tiledb_utils.cc [ 13%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/cram/cram_index.c [ 13%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/cram/cram_io.c [ 13%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/codec.cc /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/c_api/tiledb_utils.cc: In function 'void TileDBUtils::print_md5_hash(unsigned char*, size_t)': /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/c_api/tiledb_utils.cc:330:6: warning: 'unsigned char* TileDBUtils::MD5(const unsigned char*, size_t, unsigned char*)' is deprecated: Since OpenSSL 3.0 [-Wdeprecated-declarations] 330 | MD5(buffer, length, md); | ~~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/c_api/tiledb_utils.cc:327: /usr/include/openssl/md5.h:52:38: note: declared here 52 | OSSL_DEPRECATEDIN_3_0 unsigned char *MD5(const unsigned char *d, size_t n, | ^~~ [ 14%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/cram/cram_samtools.c [ 14%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/cram/cram_stats.c [ 14%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/codec_blosc.cc [ 14%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/cram/mFILE.c [ 15%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/codec_filter.cc [ 16%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/cram/open_trace_file.c [ 16%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_bit_shuffle.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_bit_shuffle.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_bit_shuffle.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_bit_shuffle.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/codec_filter_bit_shuffle.cc [ 16%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/cram/pooled_alloc.c [ 16%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/cram/rANS_static.c [ 16%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib/cram/string_alloc.c make -f src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build.make src/main/CMakeFiles/GenomicsDB_library_object_files.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/src/main /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/DependInfo.cmake --color= [ 16%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/codec_filter_delta_encode.cc [ 17%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/codec_gzip.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build.make src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build [ 17%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_lz4.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_lz4.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_lz4.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_lz4.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/codec_lz4.cc make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 17%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/query_operations/variant_operations.cc [ 17%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/codec_rle.cc [ 18%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/codec_zstd.cc [ 18%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/query_operations/broad_combined_gvcf.cc [ 18%] Building C object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/bitshuffle_core.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cc -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -std=gnu11 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/bitshuffle_core.c.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/bitshuffle_core.c.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/bitshuffle_core.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle/bitshuffle_core.c [ 18%] Building C object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cc -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -std=gnu11 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle/iochain.c [ 19%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/expressions/expression.cc [ 19%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/fragment/book_keeping.cc [ 19%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/fragment/fragment.cc [ 20%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/fragment/read_state.cc [ 20%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/fragment/write_state.cc [ 20%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/metadata/metadata.cc [ 20%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/metadata/metadata_iterator.cc [ 21%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/misc/error.cc [ 22%] Linking C shared library libgenomicsdb-hts.so cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib && /usr/bin/cmake -E cmake_link_script CMakeFiles/genomicsdb-hts.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libgenomicsdb-hts.so -o libgenomicsdb-hts.so "CMakeFiles/genomicsdb-hts.dir/kfunc.c.o" "CMakeFiles/genomicsdb-hts.dir/knetfile.c.o" "CMakeFiles/genomicsdb-hts.dir/kstring.c.o" "CMakeFiles/genomicsdb-hts.dir/bcf_sr_sort.c.o" "CMakeFiles/genomicsdb-hts.dir/bgzf.c.o" "CMakeFiles/genomicsdb-hts.dir/errmod.c.o" "CMakeFiles/genomicsdb-hts.dir/faidx.c.o" "CMakeFiles/genomicsdb-hts.dir/header.c.o" "CMakeFiles/genomicsdb-hts.dir/hfile.c.o" "CMakeFiles/genomicsdb-hts.dir/hfile_libcurl.c.o" "CMakeFiles/genomicsdb-hts.dir/hfile_net.c.o" "CMakeFiles/genomicsdb-hts.dir/hts.c.o" "CMakeFiles/genomicsdb-hts.dir/hts_os.c.o" "CMakeFiles/genomicsdb-hts.dir/md5.c.o" "CMakeFiles/genomicsdb-hts.dir/multipart.c.o" "CMakeFiles/genomicsdb-hts.dir/probaln.c.o" "CMakeFiles/genomicsdb-hts.dir/realn.c.o" "CMakeFiles/genomicsdb-hts.dir/regidx.c.o" "CMakeFiles/genomicsdb-hts.dir/region.c.o" "CMakeFiles/genomicsdb-hts.dir/sam.c.o" "CMakeFiles/genomicsdb-hts.dir/synced_bcf_reader.c.o" "CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o" "CMakeFiles/genomicsdb-hts.dir/tbx.c.o" "CMakeFiles/genomicsdb-hts.dir/textutils.c.o" "CMakeFiles/genomicsdb-hts.dir/thread_pool.c.o" "CMakeFiles/genomicsdb-hts.dir/vcf.c.o" "CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o" /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/liblzma.so make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 22%] Built target genomicsdb-hts [ 22%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/misc/hilbert_curve.cc In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations/variant_operations.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/query_operations/variant_operations.cc:23: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:30, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/gt_common.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant.h:27: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 22%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/misc/mem_utils.cc In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations/variant_operations.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations/broad_combined_gvcf.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/query_operations/broad_combined_gvcf.cc:24: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:30, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/gt_common.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant.h:27: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 23%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/misc/progress_bar.cc [ 23%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/misc/uri.cc [ 23%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/misc/utils.cc [ 24%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_buffer.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_buffer.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_buffer.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_buffer.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/storage_manager/storage_buffer.cc /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/metadata/metadata.cc: In member function 'int Metadata::read(const char*, void**, size_t*)': /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/metadata/metadata.cc:105:6: warning: 'unsigned char* MD5(const unsigned char*, size_t, unsigned char*)' is deprecated: Since OpenSSL 3.0 [-Wdeprecated-declarations] 105 | MD5((const unsigned char*) key, strlen(key)+1, (unsigned char*) coords); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/metadata/metadata.cc:36: /usr/include/openssl/md5.h:52:38: note: declared here 52 | OSSL_DEPRECATEDIN_3_0 unsigned char *MD5(const unsigned char *d, size_t n, | ^~~ /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/metadata/metadata.cc: In member function 'void Metadata::compute_array_coords(const char*, size_t, void*&, size_t&) const': /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/metadata/metadata.cc:418:8: warning: 'unsigned char* MD5(const unsigned char*, size_t, unsigned char*)' is deprecated: Since OpenSSL 3.0 [-Wdeprecated-declarations] 418 | MD5(keys_c, key_size, coords_c); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/openssl/md5.h:52:38: note: declared here 52 | OSSL_DEPRECATEDIN_3_0 unsigned char *MD5(const unsigned char *d, size_t n, | ^~~ [ 24%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_fs.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_fs.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_fs.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_fs.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/storage_manager/storage_fs.cc [ 24%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_manager.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_manager.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_manager.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_manager.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/storage_manager/storage_manager.cc [ 25%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_manager_config.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_manager_config.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_manager_config.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_manager_config.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/storage_manager/storage_manager_config.cc [ 25%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_posixfs.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_posixfs.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_posixfs.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_posixfs.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/storage_manager/storage_posixfs.cc [ 25%] Building C object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cc -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/storage_manager -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4 -std=gnu11 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/src/codec/external/lz4/lz4.c [ 25%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/query_operations/variant_operations_columnar.cc [ 26%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf_columnar.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf_columnar.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf_columnar.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf_columnar.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/query_operations/broad_combined_gvcf_columnar.cc [ 26%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc [ 26%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/genomicsdb/variant_cell.cc In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations/variant_operations.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/query_operations/variant_operations_columnar.cc:23: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:30, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/gt_common.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant.h:27: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc:25: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:30, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations/gt_remapper.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations/gt_remapper_template_definition.h:25, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc:23: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/genomicsdb/variant_cell.cc:23: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:30, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations/variant_operations.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/query_operations/broad_combined_gvcf_columnar.cc:23: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:30, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/gt_common.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant.h:27: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 27%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/genomicsdb/variant_storage_manager.cc [ 27%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/genomicsdb/variant_field_data.cc [ 27%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_array_schema.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_array_schema.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_array_schema.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_array_schema.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/genomicsdb/variant_array_schema.cc In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/genomicsdb/variant_storage_manager.cc:24: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:30, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:27: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 28%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_handler.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_handler.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_handler.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_handler.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/genomicsdb/variant_field_handler.cc [ 28%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/genomicsdb/variant_array_schema.cc:25: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:30, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_array_schema.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/genomicsdb/variant_array_schema.cc:24: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/genomicsdb/variant.cc In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/genomicsdb/variant_field_data.cc:23: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/memory:63, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_field_data.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations/variant_operations.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/genomicsdb/variant_field_handler.cc:23: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:30, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/gt_common.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant.h:27: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 28%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/genomicsdb/query_variants.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 28%] Built target TILEDB_CORE_OBJECTS make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 28%] Linking CXX static library libgenomicsdb-tiledb.a cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cmake -P CMakeFiles/tiledb_static.dir/cmake_clean_target.cmake cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_static.dir/link.txt --verbose=1 /usr/bin/ar qc libgenomicsdb-tiledb.a CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_iterator.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_read_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb_utils.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_bit_shuffle.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_lz4.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/bitshuffle_core.c.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_buffer.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_fs.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_manager.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_manager_config.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_posixfs.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o /usr/bin/ranlib libgenomicsdb-tiledb.a In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/genomicsdb/variant.cc:23: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:30, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/gt_common.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant.h:27: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/genomicsdb/variant_field_handler.cc: In instantiation of 'bool VariantFieldHandler::concatenate_field(const Variant&, const VariantQueryConfig&, unsigned int, const void**, unsigned int&) [with DataType = std::__cxx11::basic_string; CombineResultType = std::__cxx11::basic_string]': /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/genomicsdb/variant_field_handler.cc:973:16: required from here /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:56:54: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of type '__gnu_cxx::__alloc_traits >, std::__cxx11::basic_string >::value_type' {aka 'class std::__cxx11::basic_string'} with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 56 | #define memcpy_s(dst, dst_size, src, src_size) memcpy((dst), (src), (src_size)) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/genomicsdb/variant_field_handler.cc:724:7: note: in expansion of macro 'memcpy_s' 724 | memcpy_s(&(m_concatenation_result[curr_result_size]), vec.size()*sizeof(DataType), &(vec[0]), | ^~~~~~~~ In file included from /usr/include/c++/12/string:53: /usr/include/c++/12/bits/basic_string.h:85:11: note: '__gnu_cxx::__alloc_traits >, std::__cxx11::basic_string >::value_type' {aka 'class std::__cxx11::basic_string'} declared here 85 | class basic_string | ^~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/genomicsdb/variant_field_handler.cc: In instantiation of 'bool VariantFieldHandler::collect_and_extend_fields(const Variant&, const VariantQueryConfig&, unsigned int, const void**, uint64_t&, bool, bool, bool) [with DataType = std::__cxx11::basic_string; CombineResultType = std::__cxx11::basic_string; uint64_t = long unsigned int]': /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/genomicsdb/variant_field_handler.cc:973:16: required from here /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:56:54: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of type '__gnu_cxx::__alloc_traits >, std::__cxx11::basic_string >::value_type' {aka 'class std::__cxx11::basic_string'} with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 56 | #define memcpy_s(dst, dst_size, src, src_size) memcpy((dst), (src), (src_size)) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/genomicsdb/variant_field_handler.cc:797:7: note: in expansion of macro 'memcpy_s' 797 | memcpy_s(&(m_extended_field_vector[extended_field_vector_idx]), field_ptr->length()*sizeof(DataType), | ^~~~~~~~ /usr/include/c++/12/bits/basic_string.h:85:11: note: '__gnu_cxx::__alloc_traits >, std::__cxx11::basic_string >::value_type' {aka 'class std::__cxx11::basic_string'} declared here 85 | class basic_string | ^~~~~~~~~~~~ [ 28%] Built target tiledb_static make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 29%] Linking CXX shared library libgenomicsdb-tiledb.so cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libgenomicsdb-tiledb.so -o libgenomicsdb-tiledb.so CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_iterator.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_read_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb_utils.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_bit_shuffle.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_lz4.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/bitshuffle_core.c.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_buffer.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_fs.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_manager.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_manager_config.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_posixfs.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 29%] Built target tiledb_shared make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 29%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o [ 30%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o -MF CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o.d -o CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/array/test_array_schema.cc cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/genomicsdb/genomicsdb_columnar_field.cc [ 30%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/genomicsdb/genomicsdb_iterators.cc In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/query_variants.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/genomicsdb/query_variants.cc:24: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:30, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/gt_common.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/genomicsdb/query_variants.cc:23: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/genomicsdb/genomicsdb_iterators.cc:24: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:30, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/genomicsdb/genomicsdb_columnar_field.cc:23: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:30, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 30%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc [ 31%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/loader/tiledb_loader_text_file.cc In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_multid_vector_field.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc:24: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:30, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/vid_mapper.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc:23: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 31%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/loader/load_operators.cc In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/loader/tiledb_loader_text_file.cc:32: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:30, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/gt_common.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader/tiledb_loader_file_base.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader/tiledb_loader_text_file.h:33, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/loader/tiledb_loader_text_file.cc:30: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/query_variants.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader/load_operators.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/loader/load_operators.cc:24: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:30, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/vid_mapper.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader/load_operators.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 31%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/loader/genomicsdb_importer.cc In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/query_variants.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader/load_operators.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader/tiledb_loader.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader/genomicsdb_importer.h:25, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/loader/genomicsdb_importer.cc:23: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:30, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/vid_mapper.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader/tiledb_loader.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 32%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/loader/tiledb_loader_file_base.cc [ 32%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/loader/tiledb_loader.cc [ 32%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/utils/memory_measure.cc [ 33%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/utils/histogram.cc [ 33%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/utils/vid_mapper_pb.cc [ 33%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/utils/lut.cc In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/query_variants.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader/load_operators.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader/tiledb_loader.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/loader/tiledb_loader.cc:23: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:30, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/vid_mapper.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader/tiledb_loader.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 33%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/known_field_info.cc.o make -f genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/depend cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/known_field_info.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/known_field_info.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/known_field_info.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/utils/known_field_info.cc make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 34%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o -MF CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o.d -o CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/benchmark/test_print_array_schema.cc [ 34%] Linking CXX executable test_print_array_schema cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_print_array_schema.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o -o test_print_array_schema ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -ldl -lmuparserx [ 35%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/utils/vid_mapper.cc [ 35%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_sql.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_sql.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_sql.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_sql.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/utils/vid_mapper_sql.cc [ 35%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/timer.cc.o make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/timer.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/timer.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/timer.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/utils/timer.cc [ 35%] Built target test_print_array_schema make -f genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 35%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o -MF CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o.d -o CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/benchmark/test_print_book_keeping.cc In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations/variant_operations.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/utils/known_field_info.cc:27: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:30, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/gt_common.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf/known_field_info.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/utils/known_field_info.cc:24: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 36%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/genomicsdb_logger.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/genomicsdb_logger.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/genomicsdb_logger.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/genomicsdb_logger.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/utils/genomicsdb_logger.cc [ 36%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc [ 37%] Linking CXX executable test_print_book_keeping cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_print_book_keeping.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o -o test_print_book_keeping ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -ldl -lmuparserx In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/utils/vid_mapper.cc:33: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:30, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/vid_mapper.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/utils/vid_mapper.cc:25: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 37%] Built target test_print_book_keeping make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 38%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o -MF CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o.d -o CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/benchmark/test_sparse_array_benchmark.cc In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc:24: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:30, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/alleles_combiner.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/alleles_combiner_template_definition.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc:23: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 38%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/vcf/vcf_adapter.cc [ 39%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/vcf/genomicsdb_bcf_generator.cc In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations/variant_operations.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations/broad_combined_gvcf.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf/genomicsdb_bcf_generator.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/vcf/genomicsdb_bcf_generator.cc:23: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:30, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf/genomicsdb_bcf_generator.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 39%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/vcf/vcf2binary.cc [ 39%] Building C object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/cc -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/vcf/hfile_genomicsdb.c [ 40%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/vcf/htslib_fs_adapter.cc In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_multid_vector_field.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/vcf/vcf2binary.cc:29: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:30, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf/vcf2binary.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/vcf/vcf2binary.cc:24: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 40%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/config/variant_query_config.cc /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/vcf/htslib_fs_adapter.cc: In function 'void* genomicsdb_filesystem_init(const char*, int)': /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/vcf/htslib_fs_adapter.cc:81:13: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'TileDB_Config' {aka 'struct TileDB_Config'}; use assignment or value-initialization instead [-Wclass-memaccess] 81 | memset(&tiledb_config, 0, sizeof(TileDB_Config)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/vcf/htslib_fs_adapter.cc:26: /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api/tiledb.h:93:16: note: 'TileDB_Config' {aka 'struct TileDB_Config'} declared here 93 | typedef struct TileDB_Config { | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/query_variants.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/config/variant_query_config.cc:25: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/config/variant_query_config.cc:23: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 40%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/config/genomicsdb_config_base.cc [ 41%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/json_config.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/json_config.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/json_config.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/json_config.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/config/json_config.cc [ 41%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/config/pb_config.cc [ 41%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/api/annotation_service.cc [ 42%] Linking CXX executable test_array_schema cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_array_schema.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o -o test_array_schema ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -ldl -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 42%] Built target test_array_schema make -f genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 43%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o -MF CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o.d -o CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc [ 44%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/api/genomicsdb.cc [ 44%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/api/genomicsdb_field.cc [ 44%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/api/genomicsdb_plink.cc [ 45%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources/genomicsdb_coordinates.pb.cc In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations/variant_operations.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations/broad_combined_gvcf.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/api/genomicsdb.cc:39: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api/genomicsdb_exception.h:37, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api/genomicsdb.h:36, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/api/genomicsdb.cc:33: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 45%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources/genomicsdb_callsets_mapping.pb.cc [ 45%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources/genomicsdb_export_config.pb.cc In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/query_variants.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/api/genomicsdb_plink.cc:39: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api/genomicsdb_exception.h:37, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api/genomicsdb.h:36, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api/genomicsdb_plink.h:35, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/api/genomicsdb_plink.cc:33: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/api/genomicsdb_plink.cc: In member function 'virtual void GenomicsDBPlinkProcessor::process(const std::string&, const int64_t*, const genomic_interval_t&, const std::vector&, bool)': /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/api/genomicsdb_plink.cc:366:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 366 | if(g < 0 || g >= vec.size()) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/api/genomicsdb_plink.cc: In member function 'void GenomicsDBPlinkProcessor::advance_state()': /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/api/genomicsdb_plink.cc:653:24: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 653 | for(int i = 0; i < num_rows; i++) { | ~~^~~~~~~~~~ [ 46%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources/genomicsdb_import_config.pb.cc [ 46%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources/genomicsdb_vid_mapping.pb.cc make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 46%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o -MF CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o.d -o CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/c_api/test_array_schema_api.cc make -f genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 46%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o -MF CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o.d -o CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/c_api/test_dense_array_api.cc make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 46%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o -MF CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o.d -o CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/c_api/test_sparse_array_api.cc make -f genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 46%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o -MF CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o.d -o CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/c_api/test_tiledb_utils.cc make -f genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 47%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o -MF CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o.d -o CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/codec/test_codec.cc make -f genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 47%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o -MF CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o.d -o CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/codec/test_codec_filter.cc make -f genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 47%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o -MF CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o.d -o CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/expressions/test_expressions.cc make -f genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 47%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o -MF CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o.d -o CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/misc/test_mem_utils.cc make -f genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 48%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o -MF CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o.d -o CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/misc/test_uri.cc [ 48%] Linking CXX executable test_sparse_array_benchmark cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sparse_array_benchmark.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o -o test_sparse_array_benchmark ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -ldl -lmuparserx /usr/bin/ld: In file included from /usr/include/c++/12/string:40: In static member function 'static constexpr void std::char_traits::assign(char_type&, const char_type&)', inlined from 'void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::push_back(_CharT) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/12/bits/basic_string.h:1529:21, inlined from 'GenomicsDBPlinkProcessor::process(const std::string&, const int64_t*, const genomic_interval_t&, const std::vector&, bool)::&, size_t)>' at /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/api/genomicsdb_plink.cc:625:26, inlined from 'constexpr _Res std::__invoke_impl(__invoke_other, _Fn&&, _Args&& ...) [with _Res = void; _Fn = GenomicsDBPlinkProcessor::process(const std::string&, const int64_t*, const genomic_interval_t&, const std::vector&, bool)::&, size_t)>&; _Args = {const vector >&, long unsigned int}]' at /usr/include/c++/12/bits/invoke.h:61:36, inlined from 'constexpr std::enable_if_t, _Res> std::__invoke_r(_Callable&&, _Args&& ...) [with _Res = void; _Callable = GenomicsDBPlinkProcessor::process(const std::string&, const int64_t*, const genomic_interval_t&, const std::vector&, bool)::&, size_t)>&; _Args = {const vector >&, long unsigned int}]' at /usr/include/c++/12/bits/invoke.h:111:28, inlined from 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = void; _Functor = GenomicsDBPlinkProcessor::process(const std::string&, const int64_t*, const genomic_interval_t&, const std::vector&, bool)::&, size_t)>; _ArgTypes = {const std::vector >&, long unsigned int}]' at /usr/include/c++/12/bits/std_function.h:290:30: /usr/include/c++/12/bits/char_traits.h:354:14: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized] 354 | __c1 = __c2; | ~~~~~^~~~~~ /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/api/genomicsdb_plink.cc: In static member function 'static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = void; _Functor = GenomicsDBPlinkProcessor::process(const std::string&, const int64_t*, const genomic_interval_t&, const std::vector&, bool)::&, size_t)>; _ArgTypes = {const std::vector >&, long unsigned int}]': /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/src/api/genomicsdb_plink.cc:606:12: note: 'p' was declared here 606 | char p; | ^ CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o: in function `TempDir::create_temp_directory()': ./obj-aarch64-linux-gnu/genomicsdb-tiledb/test/./genomicsdb-tiledb/test/include/catch2/catch.h:99: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 48%] Built target test_sparse_array_benchmark make -f genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 48%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o -MF CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o.d -o CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/misc/test_utils.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 48%] Built target GenomicsDB_library_object_files make -f genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 48%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/src/storage_manager/test_posixfs.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/src/storage_manager/test_posixfs.cc.o -MF CMakeFiles/test_posixfs.dir/src/storage_manager/test_posixfs.cc.o.d -o CMakeFiles/test_posixfs.dir/src/storage_manager/test_posixfs.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/storage_manager/test_posixfs.cc [ 48%] Linking CXX executable test_array_iterator cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_array_iterator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o -o test_array_iterator ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -ldl -lmuparserx /usr/bin/ld: CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o: in function `TempDir::create_temp_directory()': ./obj-aarch64-linux-gnu/genomicsdb-tiledb/test/./genomicsdb-tiledb/test/include/catch2/catch.h:99: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 48%] Built target test_array_iterator make -f genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 48%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o -MF CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o.d -o CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/storage_manager/test_storage_buffer.cc [ 48%] Linking CXX executable test_dense_array_api cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_dense_array_api.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o -o test_dense_array_api ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -ldl -lmuparserx /usr/bin/ld: CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o: in function `TempDir::create_temp_directory()': ./obj-aarch64-linux-gnu/genomicsdb-tiledb/test/./genomicsdb-tiledb/test/include/catch2/catch.h:99: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 48%] Built target test_dense_array_api make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 49%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o -MF CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o.d -o CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_aio_read_dense.cc [ 49%] Linking CXX executable test_array_schema_api cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_array_schema_api.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o -o test_array_schema_api ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -ldl -lmuparserx [ 49%] Linking CXX executable tiledb_array_aio_read_dense cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_aio_read_dense.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o -o tiledb_array_aio_read_dense ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx In file included from /usr/include/string.h:535, from /usr/include/c++/12/cstring:42, from /usr/include/catch2/catch.hpp:5717, from /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/include/catch2/catch.h:37, from /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:38: In function 'void* memcpy(void*, const void*, size_t)', inlined from 'void C_A_T_C_H_T_E_S_T_0()' at /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:183:11: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:29:33: warning: 'void* __builtin_memcpy(void*, const void*, long unsigned int)' reading 16 bytes from a region of size 8 [-Wstringop-overread] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function 'void C_A_T_C_H_T_E_S_T_0()': /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:180:10: note: source object 'j' of size 8 180 | double j = 0.1, k = 0.2; | ^ /usr/bin/ldIn function 'void* memcpy(void*, const void*, size_t)', inlined from 'void C_A_T_C_H_T_E_S_T_0()' at /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:185:11: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:29:33: warning: 'void* __builtin_memcpy(void*, const void*, long unsigned int)' reading 16 bytes from a region of size 8 [-Wstringop-overread] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function 'void C_A_T_C_H_T_E_S_T_0()': /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:180:19: note: source object 'k' of size 8 180 | double j = 0.1, k = 0.2; | ^ In function 'void* memcpy(void*, const void*, size_t)', inlined from 'void C_A_T_C_H_T_E_S_T_0()' at /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:190:11: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:29:33: warning: 'void* __builtin_memcpy(void*, const void*, long unsigned int)' reading 16 bytes from a region of size 8 [-Wstringop-overread] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function 'void C_A_T_C_H_T_E_S_T_0()': /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:180:10: note: source object 'j' of size 8 180 | double j = 0.1, k = 0.2; | ^ In function 'void* memcpy(void*, const void*, size_t)', inlined from 'void C_A_T_C_H_T_E_S_T_0()' at /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:191:11: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:29:33: warning: 'void* __builtin_memcpy(void*, const void*, long unsigned int)' reading 16 bytes from a region of size 8 [-Wstringop-overread] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function 'void C_A_T_C_H_T_E_S_T_0()': /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:180:19: note: source object 'k' of size 8 180 | double j = 0.1, k = 0.2; | ^ In function 'void* memcpy(void*, const void*, size_t)', inlined from 'void C_A_T_C_H_T_E_S_T_0()' at /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:195:11: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:29:33: warning: 'void* __builtin_memcpy(void*, const void*, long unsigned int)' reading 16 bytes from a region of size 8 [-Wstringop-overread] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function 'void C_A_T_C_H_T_E_S_T_0()': /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:180:10: note: source object 'j' of size 8 180 | double j = 0.1, k = 0.2; | ^ In function 'void* memcpy(void*, const void*, size_t)', inlined from 'void C_A_T_C_H_T_E_S_T_0()' at /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:197:11: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:29:33: warning: 'void* __builtin_memcpy(void*, const void*, long unsigned int)' reading 16 bytes from a region of size 8 [-Wstringop-overread] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function 'void C_A_T_C_H_T_E_S_T_0()': /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:180:19: note: source object 'k' of size 8 180 | double j = 0.1, k = 0.2; | ^ : CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o: in function `TempDir::create_temp_directory()': ./obj-aarch64-linux-gnu/genomicsdb-tiledb/test/./genomicsdb-tiledb/test/include/catch2/catch.h:99: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 49%] Built target tiledb_array_aio_read_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 49%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o -MF CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o.d -o CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_aio_write_dense.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 49%] Built target test_array_schema_api make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 49%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o -MF CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o.d -o CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_consolidate.cc [ 50%] Linking CXX executable tiledb_array_aio_write_dense cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_aio_write_dense.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o -o tiledb_array_aio_write_dense ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx [ 50%] Linking CXX executable tiledb_array_consolidate cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_consolidate.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o -o tiledb_array_consolidate ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 50%] Built target tiledb_array_aio_write_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 51%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o -MF CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o.d -o CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_create_dense.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 51%] Built target tiledb_array_consolidate make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 51%] Linking CXX executable test_tiledb_utils cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_tiledb_utils.dir/link.txt --verbose=1 [ 51%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/src/tiledb_array_create_sparse.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/src/tiledb_array_create_sparse.cc.o -MF CMakeFiles/tiledb_array_create_sparse.dir/src/tiledb_array_create_sparse.cc.o.d -o CMakeFiles/tiledb_array_create_sparse.dir/src/tiledb_array_create_sparse.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_create_sparse.cc /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o -o test_tiledb_utils ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -ldl -lmuparserx /usr/bin/ld: [ 51%] Linking CXX executable tiledb_array_create_dense cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_create_dense.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o -o tiledb_array_create_dense ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx [ 52%] Linking CXX executable tiledb_array_create_sparse cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_create_sparse.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_create_sparse.dir/src/tiledb_array_create_sparse.cc.o -o tiledb_array_create_sparse ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o: in function `TempDir::create_temp_directory()': ./obj-aarch64-linux-gnu/genomicsdb-tiledb/test/./genomicsdb-tiledb/test/include/catch2/catch.h:99: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 52%] Built target tiledb_array_create_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 52%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o -MF CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o.d -o CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_iterator_dense.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 52%] Built target tiledb_array_create_sparse make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 52%] Linking CXX executable test_codec cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_codec.dir/link.txt --verbose=1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 52%] Built target test_tiledb_utils make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/DependInfo.cmake --color= /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o -o test_codec ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -ldl -lmuparserx [ 53%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o -MF CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o.d -o CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_iterator_sparse.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 53%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o -MF CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o.d -o CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_iterator_sparse_filter.cc [ 53%] Linking CXX executable tiledb_array_iterator_dense cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_iterator_dense.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o -o tiledb_array_iterator_dense ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx [ 53%] Linking CXX executable tiledb_array_iterator_sparse cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_iterator_sparse.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o -o tiledb_array_iterator_sparse ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 53%] Built target test_codec make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/depend [ 54%] Linking CXX executable test_codec_filter make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/DependInfo.cmake --color= cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_codec_filter.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o -o test_codec_filter ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -ldl -lmuparserx [ 54%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o -MF CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o.d -o CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_parallel_consolidate_dense.cc [ 55%] Linking CXX executable tiledb_array_iterator_sparse_filter cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_iterator_sparse_filter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o -o tiledb_array_iterator_sparse_filter ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 55%] Built target tiledb_array_iterator_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 56%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o -MF CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o.d -o CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_parallel_consolidate_sparse.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 56%] Built target tiledb_array_iterator_sparse make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 56%] Built target test_codec_filter make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/DependInfo.cmake --color= [ 56%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/src/tiledb_array_parallel_read_dense_1.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/src/tiledb_array_parallel_read_dense_1.cc.o -MF CMakeFiles/tiledb_array_parallel_read_dense_1.dir/src/tiledb_array_parallel_read_dense_1.cc.o.d -o CMakeFiles/tiledb_array_parallel_read_dense_1.dir/src/tiledb_array_parallel_read_dense_1.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_parallel_read_dense_1.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 56%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o -MF CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o.d -o CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_parallel_read_dense_2.cc [ 56%] Linking CXX executable tiledb_array_parallel_consolidate_dense cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o -o tiledb_array_parallel_consolidate_dense ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx [ 56%] Linking CXX executable tiledb_array_parallel_consolidate_sparse cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o -o tiledb_array_parallel_consolidate_sparse ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx [ 57%] Linking CXX executable tiledb_array_parallel_read_dense_1 cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_read_dense_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_parallel_read_dense_1.dir/src/tiledb_array_parallel_read_dense_1.cc.o -o tiledb_array_parallel_read_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 57%] Linking CXX executable tiledb_array_parallel_read_dense_2 cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_read_dense_2.dir/link.txt --verbose=1 [ 57%] Built target tiledb_array_iterator_sparse_filter make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/DependInfo.cmake --color= /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o -o tiledb_array_parallel_read_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 57%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o -MF CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o.d -o CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_parallel_read_mpi_io_dense.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 57%] Built target tiledb_array_parallel_consolidate_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 57%] Built target tiledb_array_parallel_read_dense_1 [ 57%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/depend cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o -MF CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_parallel_read_sparse_1.cc make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/DependInfo.cmake --color= [ 58%] Linking CXX executable tiledb_array_parallel_read_mpi_io_dense cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/link.txt --verbose=1 [ 58%] Built target tiledb_array_parallel_consolidate_sparse make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o -o tiledb_array_parallel_read_mpi_io_dense ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 59%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/src/tiledb_array_parallel_read_sparse_2.cc.o [ 59%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o -MF CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o.d -o CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_parallel_write_dense_1.cc cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/src/tiledb_array_parallel_read_sparse_2.cc.o -MF CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/src/tiledb_array_parallel_read_sparse_2.cc.o.d -o CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/src/tiledb_array_parallel_read_sparse_2.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_parallel_read_sparse_2.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 59%] Built target tiledb_array_parallel_read_mpi_io_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/DependInfo.cmake --color= [ 59%] Built target tiledb_array_parallel_read_dense_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 59%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o [ 60%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o -MF CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o.d -o CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_parallel_write_dense_2.cc cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o -MF CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_parallel_write_sparse_1.cc [ 60%] Linking CXX executable tiledb_array_parallel_read_sparse_1 cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o -o tiledb_array_parallel_read_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx [ 61%] Linking CXX executable tiledb_array_parallel_write_dense_1 cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_write_dense_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o -o tiledb_array_parallel_write_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx [ 61%] Linking CXX executable tiledb_array_parallel_write_sparse_1 cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o -o tiledb_array_parallel_write_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx [ 61%] Linking CXX executable tiledb_array_parallel_write_dense_2 cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_write_dense_2.dir/link.txt --verbose=1 [ 61%] Linking CXX executable tiledb_array_parallel_read_sparse_2 cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o -o tiledb_array_parallel_write_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/src/tiledb_array_parallel_read_sparse_2.cc.o -o tiledb_array_parallel_read_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 61%] Built target tiledb_array_parallel_read_sparse_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 61%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o -MF CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o.d -o CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_parallel_write_sparse_2.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 61%] Built target tiledb_array_parallel_write_sparse_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 61%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o -MF CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o.d -o CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_primitive.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 61%] Built target tiledb_array_parallel_write_dense_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/DependInfo.cmake --color= [ 61%] Built target tiledb_array_parallel_read_sparse_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 61%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o -MF CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o.d -o CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_read_dense_2.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 62%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o -MF CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o.d -o CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_read_dense_1.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 63%] Linking CXX executable tiledb_array_parallel_write_sparse_2 cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/link.txt --verbose=1 [ 63%] Built target tiledb_array_parallel_write_dense_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/depend /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o -o tiledb_array_parallel_write_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 63%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o -MF CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o.d -o CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_read_dense_3.cc [ 64%] Linking CXX executable tiledb_array_read_dense_2 cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_dense_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o -o tiledb_array_read_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx [ 64%] Linking CXX executable tiledb_array_primitive cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_primitive.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o -o tiledb_array_primitive ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx [ 64%] Linking CXX executable tiledb_array_read_dense_1 [ 65%] Linking CXX executable test_mem_utils cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_dense_1.dir/link.txt --verbose=1 cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mem_utils.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o -o tiledb_array_read_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o -o test_mem_utils ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -ldl -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 65%] Built target tiledb_array_parallel_write_sparse_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/DependInfo.cmake --color= [ 65%] Linking CXX executable tiledb_array_read_dense_3 cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_dense_3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o -o tiledb_array_read_dense_3 ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 65%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o -MF CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o.d -o CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_read_dense_sorted.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 65%] Built target tiledb_array_read_dense_2 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build [ 65%] Built target test_mem_utils make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/DependInfo.cmake --color= [ 65%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o -MF CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_1.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 66%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o -MF CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_2.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 66%] Built target tiledb_array_primitive make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/depend [ 66%] Built target tiledb_array_read_dense_1 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/DependInfo.cmake --color= make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 66%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o -MF CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_filter_2.cc [ 66%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o -MF CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_filter_1.cc [ 67%] Linking CXX executable tiledb_array_read_dense_sorted cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_dense_sorted.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o -o tiledb_array_read_dense_sorted ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx [ 67%] Linking CXX executable tiledb_array_read_sparse_1 cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_1.dir/link.txt --verbose=1 [ 67%] Linking CXX executable tiledb_array_read_sparse_2 cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o -o tiledb_array_read_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o -o tiledb_array_read_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 67%] Built target tiledb_array_read_dense_3 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 68%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o -MF CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_sorted.cc [ 68%] Linking CXX executable tiledb_array_read_sparse_filter_2 cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_filter_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o -o tiledb_array_read_sparse_filter_2 ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx [ 69%] Linking CXX executable tiledb_array_read_sparse_filter_1 cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_filter_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o -o tiledb_array_read_sparse_filter_1 ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 69%] Built target tiledb_array_read_dense_sorted make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 69%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o -MF CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o.d -o CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_update_dense_1.cc [ 69%] Linking CXX executable tiledb_array_read_sparse_sorted cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_sorted.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o -o tiledb_array_read_sparse_sorted ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx [ 69%] Built target tiledb_array_read_sparse_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 69%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o -MF CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o.d -o CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_update_dense_2.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 69%] Built target tiledb_array_read_sparse_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 70%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o -MF CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_update_sparse_1.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 70%] Built target tiledb_array_read_sparse_filter_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/DependInfo.cmake --color= [ 70%] Built target tiledb_array_read_sparse_sorted make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 71%] Linking CXX executable tiledb_array_update_dense_1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_update_dense_1.dir/link.txt --verbose=1 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 71%] Linking CXX executable tiledb_array_update_dense_2 cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_update_dense_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o -o tiledb_array_update_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx [ 71%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o -MF CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o.d -o CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_update_sparse_2.cc [ 71%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o -MF CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o.d -o CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_write_dense_1.cc /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o -o tiledb_array_update_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx [ 71%] Built target tiledb_array_read_sparse_filter_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 72%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o -MF CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o.d -o CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_write_dense_2.cc [ 72%] Linking CXX executable tiledb_array_update_sparse_1 cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_update_sparse_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o -o tiledb_array_update_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx [ 72%] Linking CXX executable tiledb_array_write_dense_1 cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_dense_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o -o tiledb_array_write_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 73%] Linking CXX executable tiledb_array_update_sparse_2 cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_update_sparse_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o -o tiledb_array_update_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx [ 73%] Built target tiledb_array_update_dense_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/DependInfo.cmake --color= [ 73%] Built target tiledb_array_update_dense_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 73%] Linking CXX executable tiledb_array_write_dense_2 cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_dense_2.dir/link.txt --verbose=1 [ 73%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o -MF CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o.d -o CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_write_dense_sorted.cc [ 74%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o -MF CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_write_sparse_1.cc /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o -o tiledb_array_write_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 74%] Built target tiledb_array_update_sparse_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 74%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o -MF CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o.d -o CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_write_sparse_2.cc [ 74%] Linking CXX executable tiledb_array_write_dense_sorted cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_dense_sorted.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o -o tiledb_array_write_dense_sorted ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 74%] Built target tiledb_array_update_sparse_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 74%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o -MF CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o.d -o CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_write_sparse_3.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 74%] Built target tiledb_array_write_dense_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 75%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o -MF CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o.d -o CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_array_write_sparse_4.cc [ 75%] Linking CXX executable tiledb_array_write_sparse_1 cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_sparse_1.dir/link.txt --verbose=1 [ 76%] Linking CXX executable tiledb_array_write_sparse_2 cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_sparse_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o -o tiledb_array_write_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o -o tiledb_array_write_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 76%] Linking CXX executable tiledb_array_write_sparse_3 cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_sparse_3.dir/link.txt --verbose=1 [ 76%] Built target tiledb_array_write_dense_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/depend /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o -o tiledb_array_write_sparse_3 ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 76%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o -MF CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o.d -o CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_catching_errors.cc [ 76%] Linking CXX executable tiledb_array_write_sparse_4 cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_sparse_4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o -o tiledb_array_write_sparse_4 ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 76%] Built target tiledb_array_write_dense_sorted make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 76%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o -MF CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o.d -o CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_clear_delete_move.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 76%] Built target tiledb_array_write_sparse_4 [ 77%] Linking CXX executable tiledb_catching_errors make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/depend cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_catching_errors.dir/link.txt --verbose=1 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/DependInfo.cmake --color= /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o -o tiledb_catching_errors ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 78%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o -MF CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o.d -o CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_config.cc [ 78%] Built target tiledb_array_write_sparse_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 78%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o -MF CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o.d -o CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_delete.cc [ 78%] Built target tiledb_array_write_sparse_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 78%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o -MF CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o.d -o CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_ls.cc [ 78%] Linking CXX executable tiledb_clear_delete_move cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_clear_delete_move.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o -o tiledb_clear_delete_move ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx [ 78%] Built target tiledb_array_write_sparse_3 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 79%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o -MF CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o.d -o CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_ls_workspaces.cc [ 79%] Linking CXX executable tiledb_config cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_config.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o -o tiledb_config ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx [ 79%] Linking CXX executable tiledb_ls cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_ls.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o -o tiledb_ls ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx [ 80%] Linking CXX executable tiledb_delete cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_delete.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o -o tiledb_delete ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 80%] Built target tiledb_catching_errors make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 80%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o -MF CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o.d -o CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_metadata_consolidate.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 80%] Built target tiledb_config make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/DependInfo.cmake --color= [ 80%] Linking CXX executable tiledb_ls_workspaces cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_ls_workspaces.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o -o tiledb_ls_workspaces ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 80%] Built target tiledb_clear_delete_move make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/depend [ 80%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o -MF CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o.d -o CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_metadata_create.cc make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 80%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o -MF CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o.d -o CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_metadata_iterator.cc [ 81%] Linking CXX executable tiledb_metadata_consolidate cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_consolidate.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o -o tiledb_metadata_consolidate ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx [ 81%] Built target tiledb_ls make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 81%] Built target tiledb_delete make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/DependInfo.cmake --color= [ 81%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o -MF CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o.d -o CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_metadata_primitive.cc [ 81%] Linking CXX executable tiledb_metadata_create cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_create.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o -o tiledb_metadata_create ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx [ 82%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o -MF CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o.d -o CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_metadata_read.cc [ 83%] Linking CXX executable tiledb_metadata_iterator cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_iterator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o -o tiledb_metadata_iterator ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 83%] Built target tiledb_ls_workspaces make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 83%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o -MF CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o.d -o CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_metadata_update.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 83%] Built target tiledb_metadata_consolidate make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/DependInfo.cmake --color= [ 83%] Linking CXX executable tiledb_metadata_read cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_read.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o -o tiledb_metadata_read ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx [ 83%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o -MF CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o.d -o CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_metadata_write.cc [ 83%] Linking CXX executable tiledb_metadata_primitive cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_primitive.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now 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CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o -o tiledb_metadata_update ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx [ 84%] Built target tiledb_metadata_iterator make -f src/main/CMakeFiles/tiledbgenomicsdb.dir/build.make src/main/CMakeFiles/tiledbgenomicsdb.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/src/main /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/tiledbgenomicsdb.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f src/main/CMakeFiles/tiledbgenomicsdb.dir/build.make src/main/CMakeFiles/tiledbgenomicsdb.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 84%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/src/tiledb_workspace_group_create.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/src/tiledb_workspace_group_create.cc.o -MF CMakeFiles/tiledb_workspace_group_create.dir/src/tiledb_workspace_group_create.cc.o.d -o CMakeFiles/tiledb_workspace_group_create.dir/src/tiledb_workspace_group_create.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples/src/tiledb_workspace_group_create.cc [ 84%] Linking CXX shared library libgenomicsdb.so cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledbgenomicsdb.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -shared -Wl,-soname,libgenomicsdb.so.0 -o libgenomicsdb.so.1.4.4 CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o 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CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/json_config.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o -Wl,-rpath,/usr/lib/aarch64-linux-gnu/openmpi/lib:/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib:/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core: /usr/lib/aarch64-linux-gnu/libprotobuf.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libuuid.so -ldl ../../genomicsdb-htslib/libgenomicsdb-hts.so ../../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/libfmt.so.9.1.0 /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libmuparserx.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libuuid.so -ldl /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/liblzma.so make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 84%] Built target tiledb_metadata_read make -f src/main/CMakeFiles/genomicsdb.dir/build.make src/main/CMakeFiles/genomicsdb.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/src/main /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/genomicsdb.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f src/main/CMakeFiles/genomicsdb.dir/build.make src/main/CMakeFiles/genomicsdb.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 85%] Linking CXX static library libgenomicsdb.a cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/cmake -P CMakeFiles/genomicsdb.dir/cmake_clean_target.cmake cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/cmake -E cmake_link_script CMakeFiles/genomicsdb.dir/link.txt --verbose=1 /usr/bin/ar qc libgenomicsdb.a CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o 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CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/json_config.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o [ 85%] Linking CXX executable tiledb_metadata_write cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_write.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o -o tiledb_metadata_write ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 85%] Linking CXX executable test_uri cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_uri.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 85%] Built target tiledb_metadata_primitive /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o -o test_uri ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -ldl -lmuparserx [ 85%] Built target tiledb_metadata_update [ 86%] Linking CXX executable tiledb_workspace_group_create cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_workspace_group_create.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_workspace_group_create.dir/src/tiledb_workspace_group_create.cc.o -o tiledb_workspace_group_create ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 86%] Built target tiledb_metadata_write /usr/bin/ranlib libgenomicsdb.a make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 86%] Built target test_uri make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 86%] Built target tiledb_workspace_group_create make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 86%] Built target genomicsdb make -f src/test/cpp/CMakeFiles/ctests.dir/build.make src/test/cpp/CMakeFiles/ctests.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/DependInfo.cmake --color= make -f src/test/cpp/CMakeFiles/api_tests.dir/build.make src/test/cpp/CMakeFiles/api_tests.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp/CMakeFiles/api_tests.dir/DependInfo.cmake --color= make -f tools/CMakeFiles/create_genomicsdb_workspace.dir/build.make tools/CMakeFiles/create_genomicsdb_workspace.dir/depend make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f src/test/cpp/CMakeFiles/ctests.dir/build.make src/test/cpp/CMakeFiles/ctests.dir/build cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/tools /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools/CMakeFiles/create_genomicsdb_workspace.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f tools/CMakeFiles/gt_mpi_gather.dir/build.make tools/CMakeFiles/gt_mpi_gather.dir/depend make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/tools /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools/CMakeFiles/gt_mpi_gather.dir/DependInfo.cmake --color= make -f src/test/cpp/CMakeFiles/api_tests.dir/build.make src/test/cpp/CMakeFiles/api_tests.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 86%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/ctest_main.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/tests/\" -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader 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-Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/ctest_main.cc.o -MF CMakeFiles/ctests.dir/src/ctest_main.cc.o.d -o CMakeFiles/ctests.dir/src/ctest_main.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/src/ctest_main.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f tools/CMakeFiles/create_genomicsdb_workspace.dir/build.make tools/CMakeFiles/create_genomicsdb_workspace.dir/build [ 86%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_config.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/tests/\" -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_config.cc.o -MF CMakeFiles/ctests.dir/src/test_config.cc.o.d -o CMakeFiles/ctests.dir/src/test_config.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/src/test_config.cc make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 87%] Building CXX object src/test/cpp/CMakeFiles/api_tests.dir/src/ctest_main.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT src/test/cpp/CMakeFiles/api_tests.dir/src/ctest_main.cc.o -MF CMakeFiles/api_tests.dir/src/ctest_main.cc.o.d -o CMakeFiles/api_tests.dir/src/ctest_main.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/src/ctest_main.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f tools/CMakeFiles/gt_mpi_gather.dir/build.make tools/CMakeFiles/gt_mpi_gather.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 87%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_non_diploid_mapper.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/tests/\" -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_non_diploid_mapper.cc.o -MF CMakeFiles/ctests.dir/src/test_non_diploid_mapper.cc.o.d -o CMakeFiles/ctests.dir/src/test_non_diploid_mapper.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/src/test_non_diploid_mapper.cc [ 87%] Building CXX object tools/CMakeFiles/create_genomicsdb_workspace.dir/src/create_genomicsdb_workspace.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.4.4/tools/include -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT tools/CMakeFiles/create_genomicsdb_workspace.dir/src/create_genomicsdb_workspace.cc.o -MF CMakeFiles/create_genomicsdb_workspace.dir/src/create_genomicsdb_workspace.cc.o.d -o CMakeFiles/create_genomicsdb_workspace.dir/src/create_genomicsdb_workspace.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/tools/src/create_genomicsdb_workspace.cc [ 87%] Building CXX object tools/CMakeFiles/gt_mpi_gather.dir/src/gt_mpi_gather.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.4.4/tools/include -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT tools/CMakeFiles/gt_mpi_gather.dir/src/gt_mpi_gather.cc.o -MF CMakeFiles/gt_mpi_gather.dir/src/gt_mpi_gather.cc.o.d -o CMakeFiles/gt_mpi_gather.dir/src/gt_mpi_gather.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/tools/src/gt_mpi_gather.cc [ 88%] Linking CXX executable create_genomicsdb_workspace cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/create_genomicsdb_workspace.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie CMakeFiles/create_genomicsdb_workspace.dir/src/create_genomicsdb_workspace.cc.o -o create_genomicsdb_workspace -Wl,-rpath,/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib:/usr/lib/aarch64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/libprotobuf.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libuuid.so -ldl /usr/lib/aarch64-linux-gnu/libfmt.so.9.1.0 /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libmuparserx.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libuuid.so -ldl make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 88%] Built target create_genomicsdb_workspace make -f tools/CMakeFiles/vcf2genomicsdb_init.dir/build.make tools/CMakeFiles/vcf2genomicsdb_init.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/tools /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools/CMakeFiles/vcf2genomicsdb_init.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f tools/CMakeFiles/vcf2genomicsdb_init.dir/build.make tools/CMakeFiles/vcf2genomicsdb_init.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 88%] Building CXX object tools/CMakeFiles/vcf2genomicsdb_init.dir/src/vcf2genomicsdb_init.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.4.4/tools/include -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT tools/CMakeFiles/vcf2genomicsdb_init.dir/src/vcf2genomicsdb_init.cc.o -MF CMakeFiles/vcf2genomicsdb_init.dir/src/vcf2genomicsdb_init.cc.o.d -o CMakeFiles/vcf2genomicsdb_init.dir/src/vcf2genomicsdb_init.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/tools/src/vcf2genomicsdb_init.cc cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/cmake -E cmake_symlink_library libgenomicsdb.so.1.4.4 libgenomicsdb.so.0 libgenomicsdb.so make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 88%] Built target tiledbgenomicsdb make -f tools/CMakeFiles/vcf2genomicsdb.dir/build.make tools/CMakeFiles/vcf2genomicsdb.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/tools /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools/CMakeFiles/vcf2genomicsdb.dir/DependInfo.cmake --color= In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/query_variants.h:27, from /build/reproducible-path/genomicsdb-1.4.4/tools/src/gt_mpi_gather.cc:30: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/tools/src/gt_mpi_gather.cc:24: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f tools/CMakeFiles/vcf2genomicsdb.dir/build.make tools/CMakeFiles/vcf2genomicsdb.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 88%] Building CXX object tools/CMakeFiles/vcf2genomicsdb.dir/src/vcf2genomicsdb.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.4.4/tools/include -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT tools/CMakeFiles/vcf2genomicsdb.dir/src/vcf2genomicsdb.cc.o -MF CMakeFiles/vcf2genomicsdb.dir/src/vcf2genomicsdb.cc.o.d -o CMakeFiles/vcf2genomicsdb.dir/src/vcf2genomicsdb.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/tools/src/vcf2genomicsdb.cc In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations/variant_operations.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/src/test_non_diploid_mapper.cc:26: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/catch2/catch.hpp:477, from /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/src/test_non_diploid_mapper.cc:24: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 88%] Linking CXX executable test_sparse_array_api cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sparse_array_api.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o -o test_sparse_array_api ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -ldl -lmuparserx /usr/bin/ld: In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/query_variants.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader/load_operators.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader/tiledb_loader.h:29, from /build/reproducible-path/genomicsdb-1.4.4/tools/src/vcf2genomicsdb.cc:25: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:30, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf/vcf2binary.h:26, from /build/reproducible-path/genomicsdb-1.4.4/tools/src/vcf2genomicsdb.cc:24: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o: in function `TempDir::create_temp_directory()': ./obj-aarch64-linux-gnu/genomicsdb-tiledb/test/./genomicsdb-tiledb/test/include/catch2/catch.h:99: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 88%] Built target test_sparse_array_api make -f tools/CMakeFiles/vcfdiff.dir/build.make tools/CMakeFiles/vcfdiff.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/tools /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools/CMakeFiles/vcfdiff.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f tools/CMakeFiles/vcfdiff.dir/build.make tools/CMakeFiles/vcfdiff.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 88%] Building CXX object tools/CMakeFiles/vcfdiff.dir/src/vcfdiff.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.4.4/tools/include -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT tools/CMakeFiles/vcfdiff.dir/src/vcfdiff.cc.o -MF CMakeFiles/vcfdiff.dir/src/vcfdiff.cc.o.d -o CMakeFiles/vcfdiff.dir/src/vcfdiff.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/tools/src/vcfdiff.cc [ 88%] Linking CXX executable test_utils cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_utils.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o -o test_utils ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -ldl -lmuparserx /usr/bin/ld: CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o: in function `TempDir::create_temp_directory()': ./obj-aarch64-linux-gnu/genomicsdb-tiledb/test/./genomicsdb-tiledb/test/include/catch2/catch.h:99: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations/variant_operations.h:26, from /build/reproducible-path/genomicsdb-1.4.4/tools/include/vcfdiff.h:31, from /build/reproducible-path/genomicsdb-1.4.4/tools/src/vcfdiff.cc:25: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/bits/stl_tree.h:63, from /usr/include/c++/12/map:60, from /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:42, from /usr/lib/aarch64-linux-gnu/openmpi/include/mpi.h:2887, from /build/reproducible-path/genomicsdb-1.4.4/tools/src/vcfdiff.cc:24: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 89%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_multid_vector.cc.o [ 89%] Built target test_utils cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/tests/\" -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_multid_vector.cc.o -MF CMakeFiles/ctests.dir/src/test_multid_vector.cc.o.d -o CMakeFiles/ctests.dir/src/test_multid_vector.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/src/test_multid_vector.cc make -f tools/CMakeFiles/vcf_histogram.dir/build.make tools/CMakeFiles/vcf_histogram.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/tools /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools/CMakeFiles/vcf_histogram.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f tools/CMakeFiles/vcf_histogram.dir/build.make tools/CMakeFiles/vcf_histogram.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 90%] Building CXX object tools/CMakeFiles/vcf_histogram.dir/src/vcf_histogram.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.4.4/tools/include -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT tools/CMakeFiles/vcf_histogram.dir/src/vcf_histogram.cc.o -MF CMakeFiles/vcf_histogram.dir/src/vcf_histogram.cc.o.d -o CMakeFiles/vcf_histogram.dir/src/vcf_histogram.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/tools/src/vcf_histogram.cc [ 90%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_pb.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/tests/\" -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_pb.cc.o -MF CMakeFiles/ctests.dir/src/test_pb.cc.o.d -o CMakeFiles/ctests.dir/src/test_pb.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/src/test_pb.cc In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_multid_vector_field.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/src/test_multid_vector.cc:27: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/catch2/catch.hpp:477, from /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/src/test_multid_vector.cc:24: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 90%] Linking CXX executable test_posixfs cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_posixfs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/test_posixfs.dir/src/storage_manager/test_posixfs.cc.o -o test_posixfs ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -ldl -lmuparserx /usr/bin/ld: In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/query_variants.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader/load_operators.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader/tiledb_loader.h:29, from /build/reproducible-path/genomicsdb-1.4.4/tools/src/vcf_histogram.cc:24: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:30, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf/vcf2binary.h:26, from /build/reproducible-path/genomicsdb-1.4.4/tools/src/vcf_histogram.cc:23: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ CMakeFiles/test_posixfs.dir/src/storage_manager/test_posixfs.cc.o: in function `TempDir::create_temp_directory()': ./obj-aarch64-linux-gnu/genomicsdb-tiledb/test/./genomicsdb-tiledb/test/include/catch2/catch.h:99: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' [ 90%] Linking CXX executable gt_mpi_gather cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/gt_mpi_gather.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie CMakeFiles/gt_mpi_gather.dir/src/gt_mpi_gather.cc.o -o gt_mpi_gather -Wl,-rpath,/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib:/usr/lib/aarch64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/libprotobuf.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libuuid.so -ldl /usr/lib/aarch64-linux-gnu/libfmt.so.9.1.0 /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libmuparserx.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libuuid.so -ldl [ 91%] Linking CXX executable test_expressions cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_expressions.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o -o test_expressions ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -ldl -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 91%] Built target test_posixfs make -f tools/CMakeFiles/consolidate_genomicsdb_array.dir/build.make tools/CMakeFiles/consolidate_genomicsdb_array.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/tools /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools/CMakeFiles/consolidate_genomicsdb_array.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f tools/CMakeFiles/consolidate_genomicsdb_array.dir/build.make tools/CMakeFiles/consolidate_genomicsdb_array.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 92%] Building CXX object tools/CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.4.4/tools/include -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT tools/CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o -MF CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o.d -o CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/tools/src/consolidate_genomicsdb_array.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 92%] Built target test_expressions make -f example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build.make example/CMakeFiles/test_genomicsdb_bcf_generator.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/example /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/example /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/example/CMakeFiles/test_genomicsdb_bcf_generator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build.make example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 92%] Building CXX object example/CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/example && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT example/CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o -MF CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o.d -o CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/example/src/test_genomicsdb_bcf_generator.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 92%] Built target gt_mpi_gather make -f example/CMakeFiles/test_genomicsdb_importer.dir/build.make example/CMakeFiles/test_genomicsdb_importer.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/example /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/example /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/example/CMakeFiles/test_genomicsdb_importer.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f example/CMakeFiles/test_genomicsdb_importer.dir/build.make example/CMakeFiles/test_genomicsdb_importer.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 93%] Building CXX object example/CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/example && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT example/CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o -MF CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o.d -o CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/example/src/test_genomicsdb_importer.cc In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations/variant_operations.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations/broad_combined_gvcf.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf/genomicsdb_bcf_generator.h:27, from /build/reproducible-path/genomicsdb-1.4.4/example/src/test_genomicsdb_bcf_generator.cc:25: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:30, from /build/reproducible-path/genomicsdb-1.4.4/example/src/test_genomicsdb_bcf_generator.cc:24: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/query_variants.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader/load_operators.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader/tiledb_loader.h:29, from /build/reproducible-path/genomicsdb-1.4.4/tools/src/consolidate_genomicsdb_array.cc:28: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/tools/src/consolidate_genomicsdb_array.cc:25: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/query_variants.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader/load_operators.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader/tiledb_loader.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader/genomicsdb_importer.h:25, from /build/reproducible-path/genomicsdb-1.4.4/example/src/test_genomicsdb_importer.cc:25: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:30, from /build/reproducible-path/genomicsdb-1.4.4/example/src/test_genomicsdb_importer.cc:24: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 93%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_logger.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/tests/\" -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_logger.cc.o -MF CMakeFiles/ctests.dir/src/test_logger.cc.o.d -o CMakeFiles/ctests.dir/src/test_logger.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/src/test_logger.cc [ 93%] Linking CXX executable test_genomicsdb_bcf_generator cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_genomicsdb_bcf_generator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o -o test_genomicsdb_bcf_generator -Wl,-rpath,/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib:/usr/lib/aarch64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/libprotobuf.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libuuid.so -ldl /usr/lib/aarch64-linux-gnu/libfmt.so.9.1.0 /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libmuparserx.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libuuid.so -ldl [ 94%] Linking CXX executable vcfdiff cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfdiff.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie CMakeFiles/vcfdiff.dir/src/vcfdiff.cc.o -o vcfdiff -Wl,-rpath,/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib:/usr/lib/aarch64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/libprotobuf.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libuuid.so -ldl /usr/lib/aarch64-linux-gnu/libfmt.so.9.1.0 /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libmuparserx.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libuuid.so -ldl [ 95%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_columnar_gvcf_iterator.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/tests/\" -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_columnar_gvcf_iterator.cc.o -MF CMakeFiles/ctests.dir/src/test_columnar_gvcf_iterator.cc.o.d -o CMakeFiles/ctests.dir/src/test_columnar_gvcf_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/src/test_columnar_gvcf_iterator.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 95%] Built target test_genomicsdb_bcf_generator make -f src/main/CMakeFiles/genomicsdbjni.dir/build.make src/main/CMakeFiles/genomicsdbjni.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/src/main /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f src/main/CMakeFiles/genomicsdbjni.dir/build.make src/main/CMakeFiles/genomicsdbjni.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 95%] Building CXX object src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -Dgenomicsdbjni_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.4.4/src/main/jni/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o -MF CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o.d -o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/jni/src/genomicsdb_GenomicsDBUtils.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 95%] Built target vcfdiff [ 95%] Building CXX object src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBImporter.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -Dgenomicsdbjni_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.4.4/src/main/jni/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBImporter.cc.o -MF CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBImporter.cc.o.d -o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBImporter.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc [ 96%] Linking CXX executable test_storage_buffer cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_storage_buffer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o -o test_storage_buffer ../core/libgenomicsdb-tiledb.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libuuid.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so -ldl /usr/lib/aarch64-linux-gnu/libmuparserx.so -ldl -lmuparserx /usr/bin/ld: CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o: in function `TempDir::create_temp_directory()': ./obj-aarch64-linux-gnu/genomicsdb-tiledb/test/./genomicsdb-tiledb/test/include/catch2/catch.h:99: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/jni/src/genomicsdb_GenomicsDBUtils.cc:28: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api/tiledb.h:43, from /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api/tiledb_utils.h:38, from /build/reproducible-path/genomicsdb-1.4.4/src/main/jni/src/genomicsdb_GenomicsDBUtils.cc:24: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/query_variants.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/src/test_columnar_gvcf_iterator.cc:30: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/catch2/catch.hpp:477, from /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/src/test_columnar_gvcf_iterator.cc:28: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 96%] Built target test_storage_buffer [ 97%] Building CXX object src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -Dgenomicsdbjni_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.4.4/src/main/jni/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o -MF CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o.d -o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/jni/src/genomicsdb_GenomicsDBQuery.cc In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/query_variants.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader/load_operators.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader/tiledb_loader.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc:24: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:30, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf/vcf2binary.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc:23: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 97%] Building CXX object src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -Dgenomicsdbjni_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.4.4/src/main/jni/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o -MF CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o.d -o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/jni/src/genomicsdb_GenomicsDBQueryStream.cc [ 97%] Building CXX object src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -Dgenomicsdbjni_EXPORTS -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.4.4/src/main/jni/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o -MF CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o.d -o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/main/jni/src/genomicsdb_jni_init.cc /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/src/test_columnar_gvcf_iterator.cc: In function 'void C_A_T_C_H_T_E_S_T_2()': /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/src/test_columnar_gvcf_iterator.cc:390:59: warning: comparison of integer expressions of different signedness: 'int32_t' {aka 'int'} and 'uint64_t' {aka 'long unsigned int'} [-Wsign-compare] 390 | REQUIRE(bcf_hdr_nsamples(bag.hdr[GoldTestEnum::GOLD]) == query_config.get_num_rows_to_query()); In file included from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations/variant_operations.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations/broad_combined_gvcf.h:26, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf/genomicsdb_bcf_generator.h:27, from /build/reproducible-path/genomicsdb-1.4.4/src/main/jni/src/genomicsdb_GenomicsDBQueryStream.cc:25: /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils/headers.h:30, from /build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf/genomicsdb_bcf_generator.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 98%] Linking CXX executable vcf2genomicsdb cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf2genomicsdb.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie CMakeFiles/vcf2genomicsdb.dir/src/vcf2genomicsdb.cc.o -o vcf2genomicsdb -Wl,-rpath,/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib:/usr/lib/aarch64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/libprotobuf.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libuuid.so -ldl /usr/lib/aarch64-linux-gnu/libfmt.so.9.1.0 /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libmuparserx.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libuuid.so -ldl [ 98%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_htslib_plugin.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/tests/\" -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_htslib_plugin.cc.o -MF CMakeFiles/ctests.dir/src/test_htslib_plugin.cc.o.d -o CMakeFiles/ctests.dir/src/test_htslib_plugin.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/src/test_htslib_plugin.cc [ 98%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_alleles_combiner.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/tests/\" -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_alleles_combiner.cc.o -MF CMakeFiles/ctests.dir/src/test_alleles_combiner.cc.o.d -o CMakeFiles/ctests.dir/src/test_alleles_combiner.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/src/test_alleles_combiner.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 98%] Built target vcf2genomicsdb [ 98%] Building CXX object src/test/cpp/CMakeFiles/api_tests.dir/src/test_genomicsdb_api.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT src/test/cpp/CMakeFiles/api_tests.dir/src/test_genomicsdb_api.cc.o -MF CMakeFiles/api_tests.dir/src/test_genomicsdb_api.cc.o.d -o CMakeFiles/api_tests.dir/src/test_genomicsdb_api.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/src/test_genomicsdb_api.cc [ 99%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/tests/\" -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o -MF CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o.d -o CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/src/test_gt_remapper.cc [ 99%] Linking CXX executable vcf_histogram cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf_histogram.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie CMakeFiles/vcf_histogram.dir/src/vcf_histogram.cc.o -o vcf_histogram -Wl,-rpath,/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib:/usr/lib/aarch64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/libprotobuf.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libuuid.so -ldl /usr/lib/aarch64-linux-gnu/libfmt.so.9.1.0 /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libmuparserx.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libuuid.so -ldl [ 99%] Linking CXX executable consolidate_genomicsdb_array cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/consolidate_genomicsdb_array.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o -o consolidate_genomicsdb_array -Wl,-rpath,/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib:/usr/lib/aarch64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/libprotobuf.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libuuid.so -ldl /usr/lib/aarch64-linux-gnu/libfmt.so.9.1.0 /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libmuparserx.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libuuid.so -ldl [ 99%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_bgen.cc.o cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.4.4/tests/\" -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.4.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_bgen.cc.o -MF CMakeFiles/ctests.dir/src/test_bgen.cc.o.d -o CMakeFiles/ctests.dir/src/test_bgen.cc.o -c /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/src/test_bgen.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 99%] Built target consolidate_genomicsdb_array make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 99%] Built target vcf_histogram In file included from /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/src/test_genomicsdb_api.cc:28: /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/src/test_genomicsdb_api.cc: In member function 'virtual void OneQueryIntervalProcessor::process(const std::string&, const int64_t*, const genomic_interval_t&, const std::vector&)': /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/src/test_genomicsdb_api.cc:296:37: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 296 | CHECK(genomic_fields.size() == m_attributes_size + 2); // Add '2' for REF and ALT fields | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/src/test_genomicsdb_api.cc: In function 'void C_A_T_C_H_T_E_S_T_40()': /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/src/test_genomicsdb_api.cc:589:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 589 | CHECK(num_threads == threads.size()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ [ 99%] Linking CXX executable test_genomicsdb_importer cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_genomicsdb_importer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o -o test_genomicsdb_importer -Wl,-rpath,/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib:/usr/lib/aarch64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/libprotobuf.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libuuid.so -ldl /usr/lib/aarch64-linux-gnu/libfmt.so.9.1.0 /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libmuparserx.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libuuid.so -ldl [ 99%] Linking CXX executable vcf2genomicsdb_init cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf2genomicsdb_init.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie CMakeFiles/vcf2genomicsdb_init.dir/src/vcf2genomicsdb_init.cc.o -o vcf2genomicsdb_init -Wl,-rpath,/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib:/usr/lib/aarch64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/libprotobuf.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libuuid.so -ldl /usr/lib/aarch64-linux-gnu/libfmt.so.9.1.0 /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libmuparserx.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libuuid.so -ldl make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 99%] Built target vcf2genomicsdb_init make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 99%] Built target test_genomicsdb_importer [100%] Linking CXX shared library libgenomicsdbjni.so cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main && /usr/bin/cmake -E cmake_link_script CMakeFiles/genomicsdbjni.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -shared -Wl,-soname,libgenomicsdbjni.so -o libgenomicsdbjni.so CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBImporter.cc.o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o -Wl,-rpath,/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main:/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core:/usr/lib/aarch64-linux-gnu/openmpi/lib:/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib libgenomicsdb.so.1.4.4 ../../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libmuparserx.so /usr/lib/aarch64-linux-gnu/libprotobuf.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libuuid.so -ldl ../../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/libfmt.so.9.1.0 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [100%] Built target genomicsdbjni [100%] Linking CXX executable ctests cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/ctests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now CMakeFiles/ctests.dir/src/ctest_main.cc.o CMakeFiles/ctests.dir/src/test_config.cc.o CMakeFiles/ctests.dir/src/test_non_diploid_mapper.cc.o CMakeFiles/ctests.dir/src/test_multid_vector.cc.o CMakeFiles/ctests.dir/src/test_pb.cc.o CMakeFiles/ctests.dir/src/test_logger.cc.o CMakeFiles/ctests.dir/src/test_columnar_gvcf_iterator.cc.o CMakeFiles/ctests.dir/src/test_htslib_plugin.cc.o CMakeFiles/ctests.dir/src/test_alleles_combiner.cc.o CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o CMakeFiles/ctests.dir/src/test_bgen.cc.o -o ctests -Wl,-rpath,/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib:/usr/lib/aarch64-linux-gnu/openmpi/lib ../../main/libgenomicsdb.a ../../../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../../../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/libprotobuf.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libuuid.so -ldl /usr/lib/aarch64-linux-gnu/libfmt.so.9.1.0 /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libmuparserx.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libuuid.so -ldl [100%] Linking CXX executable api_tests cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/api_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now CMakeFiles/api_tests.dir/src/ctest_main.cc.o CMakeFiles/api_tests.dir/src/test_genomicsdb_api.cc.o -o api_tests -Wl,-rpath,/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib:/usr/lib/aarch64-linux-gnu/openmpi/lib ../../main/libgenomicsdb.a ../../../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../../../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/aarch64-linux-gnu/librt.a /usr/lib/aarch64-linux-gnu/libprotobuf.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libuuid.so -ldl /usr/lib/aarch64-linux-gnu/libfmt.so.9.1.0 /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libmuparserx.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/aarch64-linux-gnu/liblzma.so /usr/lib/aarch64-linux-gnu/libssl.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libuuid.so -ldl cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp && /usr/bin/cmake -E tar xzf /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp/../inputs/test.tgz make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [100%] Built target api_tests make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [100%] Built target ctests make[3]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4' # Building the Java part with Maven. dh_auto_build --buildsystem=maven /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/build/reproducible-path/genomicsdb-1.4.4 -Dclassworlds.conf=/etc/maven/m2-debian.conf -Dproperties.file.manual=/build/reproducible-path/genomicsdb-1.4.4/debian/maven.properties org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/build/reproducible-path/genomicsdb-1.4.4/debian -Dmaven.repo.local=/build/reproducible-path/genomicsdb-1.4.4/debian/maven-repo --batch-mode package -DskipTests -Dnotimestamp=true -Dlocale=en_US OpenJDK 64-Bit Server VM warning: Options -Xverify:none and -noverify were deprecated in JDK 13 and will likely be removed in a future release. [INFO] Scanning for projects... [WARNING] [WARNING] Some problems were encountered while building the effective model for org.genomicsdb:genomicsdb:jar:1.4.4 [WARNING] 'build.plugins.plugin.(groupId:artifactId)' must be unique but found duplicate declaration of plugin org.apache.maven.plugins:maven-antrun-plugin @ line 235, column 12 [WARNING] [WARNING] It is highly recommended to fix these problems because they threaten the stability of your build. [WARNING] [WARNING] For this reason, future Maven versions might no longer support building such malformed projects. [WARNING] [INFO] [INFO] ---------------------< org.genomicsdb:genomicsdb >---------------------- [INFO] Building org.genomicsdb:genomicsdb 1.4.4 [INFO] --------------------------------[ jar ]--------------------------------- [WARNING] The artifact org.apache.maven.plugins:maven-resources-plugin:jar:2.6 has been relocated to org.apache.maven.plugins:maven-resources-plugin:jar:3.3.0 [WARNING] The artifact org.apache.maven.plugins:maven-jar-plugin:jar:2.4 has been relocated to org.apache.maven.plugins:maven-jar-plugin:jar:3.3.0 [WARNING] The artifact com.googlecode.json-simple:json-simple:jar:debian has been relocated to com.github.cliftonlabs:json-simple:jar:debian [INFO] [INFO] --- maven-antrun-plugin:3.1.0:run (exec-protoc) @ genomicsdb --- [INFO] Executing tasks [INFO] [mkdir] Created dir: /build/reproducible-path/genomicsdb-1.4.4/build/src/main/java [INFO] Executed tasks [INFO] [INFO] --- build-helper-maven-plugin:3.3.0:add-source (add-source) @ genomicsdb --- [INFO] Source directory: /build/reproducible-path/genomicsdb-1.4.4/build/src/main/java added. [INFO] Source directory: /build/reproducible-path/genomicsdb-1.4.4/src/main/java added. [INFO] Source directory: /build/reproducible-path/genomicsdb-1.4.4/src/main/scala added. [INFO] [INFO] --- maven-resources-plugin:3.3.0:resources (default-resources) @ genomicsdb --- [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.10.1:compile (default-compile) @ genomicsdb --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 30 source files to /build/reproducible-path/genomicsdb-1.4.4/build/classes [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[48,23] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[49,23] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[50,30] org.json.simple.parser.JSONParser in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[51,30] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[48,23] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[49,23] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[50,30] org.json.simple.parser.JSONParser in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[51,30] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[48,23] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[49,23] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[50,30] org.json.simple.parser.JSONParser in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[51,30] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/extensions/VidMapExtensions.java:[253,55] unchecked conversion required: java.util.List found: java.util.ArrayList [WARNING] /build/reproducible-path/genomicsdb-1.4.4/build/src/main/java/org/genomicsdb/model/GenomicsDBExportConfiguration.java:[483,84] PARSER in org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/build/src/main/java/org/genomicsdb/model/GenomicsDBExportConfiguration.java:[7297,72] PARSER in org.genomicsdb.model.Coordinates.ContigInterval has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[107,13] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[107,13] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[107,13] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[107,50] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[176,28] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[340,73] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[340,73] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[340,73] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[351,9] org.json.simple.parser.JSONParser in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[351,33] org.json.simple.parser.JSONParser in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[352,9] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[352,30] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[354,9] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[354,41] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[356,13] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[356,36] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[360,17] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[360,40] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[385,44] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[385,44] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[385,44] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[480,17] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[480,45] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[501,9] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[501,41] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[816,58] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[816,58] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[816,58] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/reader/GenomicsDBQuery.java:[174,32] unchecked method invocation: method jniQueryVariantCalls in class org.genomicsdb.reader.GenomicsDBQuery is applied to given types required: long,java.lang.String,java.util.List,java.util.List found: long,java.lang.String,java.util.List,java.util.List [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/reader/GenomicsDBQuery.java:[174,63] unchecked conversion required: java.util.List found: java.util.List [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/reader/GenomicsDBQuery.java:[174,87] unchecked conversion required: java.util.List found: java.util.List [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/reader/GenomicsDBQuery.java:[174,32] unchecked conversion required: java.util.List found: java.util.List [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/reader/GenomicsDBQuery.java:[180,32] unchecked method invocation: method jniQueryVariantCalls in class org.genomicsdb.reader.GenomicsDBQuery is applied to given types required: long,java.lang.String,java.util.List,java.util.List found: long,java.lang.String,java.util.List,java.util.List [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/reader/GenomicsDBQuery.java:[180,77] unchecked conversion required: java.util.List found: java.util.List [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/reader/GenomicsDBQuery.java:[180,32] unchecked conversion required: java.util.List found: java.util.List [INFO] [INFO] --- maven-resources-plugin:3.3.0:testResources (default-testResources) @ genomicsdb --- [INFO] skip non existing resourceDirectory /build/reproducible-path/genomicsdb-1.4.4/src/test/resources [INFO] [INFO] --- maven-antrun-plugin:3.1.0:run (unzip-test-artifacts) @ genomicsdb --- [INFO] Executing tasks [INFO] [mkdir] Created dir: /build/reproducible-path/genomicsdb-1.4.4/build/test [INFO] [copy] Copying 1 file to /build/reproducible-path/genomicsdb-1.4.4/build/test [INFO] [gunzip] Expanding test.tar.gz to /build/reproducible-path/genomicsdb-1.4.4/build/test/test.tar [INFO] [untar] Expanding: /build/reproducible-path/genomicsdb-1.4.4/build/test/test.tar into /build/reproducible-path/genomicsdb-1.4.4/build/test [INFO] Executed tasks [INFO] [INFO] --- maven-compiler-plugin:3.10.1:testCompile (default-testCompile) @ genomicsdb --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 12 source files to /build/reproducible-path/genomicsdb-1.4.4/build/test-classes [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[52,23] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[53,23] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[54,30] org.json.simple.parser.JSONParser in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[55,30] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[52,23] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[53,23] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[54,30] org.json.simple.parser.JSONParser in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[55,30] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[52,23] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[53,23] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[54,30] org.json.simple.parser.JSONParser in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[55,30] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[104,43] unchecked conversion required: java.util.Set found: java.util.LinkedHashSet [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[119,43] unchecked conversion required: java.util.Set found: java.util.LinkedHashSet [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[133,43] unchecked conversion required: java.util.Set found: java.util.LinkedHashSet [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[171,9] org.json.simple.parser.JSONParser in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[171,33] org.json.simple.parser.JSONParser in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[175,13] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[175,38] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[176,13] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[176,39] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[181,17] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[181,44] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[195,18] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[252,79] unchecked conversion required: htsjdk.tribble.CloseableTribbleIterator found: htsjdk.tribble.CloseableTribbleIterator [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[283,79] unchecked conversion required: htsjdk.tribble.CloseableTribbleIterator found: htsjdk.tribble.CloseableTribbleIterator [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[315,76] unchecked conversion required: htsjdk.tribble.CloseableTribbleIterator found: htsjdk.tribble.CloseableTribbleIterator [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[354,81] unchecked conversion required: htsjdk.tribble.CloseableTribbleIterator found: htsjdk.tribble.CloseableTribbleIterator [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[390,79] unchecked conversion required: htsjdk.tribble.CloseableTribbleIterator found: htsjdk.tribble.CloseableTribbleIterator [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[434,81] unchecked conversion required: htsjdk.tribble.CloseableTribbleIterator found: htsjdk.tribble.CloseableTribbleIterator [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[473,79] unchecked conversion required: htsjdk.tribble.CloseableTribbleIterator found: htsjdk.tribble.CloseableTribbleIterator [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[526,79] unchecked conversion required: htsjdk.tribble.CloseableTribbleIterator found: htsjdk.tribble.CloseableTribbleIterator [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/model/ImportConfigSpec.java:[65,43] unchecked conversion required: java.util.Set found: java.util.HashSet [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/GenomicsDBUtilsTest.java:[36,24] createTempDir() in com.google.common.io.Files has been deprecated [INFO] [INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ genomicsdb --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ genomicsdb --- [INFO] Building jar: /build/reproducible-path/genomicsdb-1.4.4/build/genomicsdb-1.4.4.jar [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 7.083 s [INFO] Finished at: 2024-03-19T08:09:05-12:00 [INFO] ------------------------------------------------------------------------ make[1]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4' jh_build -O--buildsystem=cmake debian/rules override_dh_auto_test-indep make[1]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4' dh_auto_build cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/genomicsdb-1.4.4 -B/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/build.make genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/depend make -f genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build.make genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/depend make -f CMakeFiles/protobuf_ep.dir/build.make CMakeFiles/protobuf_ep.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-htslib /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/DependInfo.cmake --color= cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/CMakeFiles/protobuf_ep.dir/DependInfo.cmake --color= Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/bcf_sr_sort.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". 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Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/errmod.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". 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Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_posixfs.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target genomicsdb-hts [ 0%] Built target protobuf_ep make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/build.make genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/build make -f src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build.make src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/src/resources /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Consolidate compiler generated dependencies of target TILEDB_CORE_OBJECTS make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build.make genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build.make src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 13%] Built target genomicsdb-hts [ 13%] Built target PROTOBUF_GENERATED_CXX_TARGET make -f src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build.make src/main/CMakeFiles/GenomicsDB_library_object_files.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/src/main /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/DependInfo.cmake --color= [ 25%] Built target TILEDB_CORE_OBJECTS Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/depend Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/depend Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/DependInfo.cmake --color= Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/DependInfo.cmake --color= Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/json_config.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_array_schema.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_handler.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf_columnar.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/genomicsdb_logger.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/known_field_info.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/timer.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_sql.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 25%] Built target tiledb_static make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/depend make -f genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/depend [ 26%] Built target tiledb_shared make -f genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/depend cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/depend cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/DependInfo.cmake --color= make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/depend Consolidate compiler generated dependencies of target GenomicsDB_library_object_files make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_print_array_schema make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/DependInfo.cmake --color= Consolidate compiler generated dependencies of target test_print_book_keeping make -f src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build.make src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/compiler_depend.internal". make -f genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Consolidate compiler generated dependencies of target test_array_schema Consolidate compiler generated dependencies of target test_sparse_array_benchmark make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/compiler_depend.internal". make -f genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_array_schema_api make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build Consolidate compiler generated dependencies of target test_array_iterator make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 31%] Built target test_print_array_schema [ 42%] Built target GenomicsDB_library_object_files make -f genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/depend [ 43%] Built target test_sparse_array_benchmark [ 44%] Built target test_array_schema [ 45%] Built target test_array_iterator make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/depend make -f genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/depend cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/DependInfo.cmake --color= make -f genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/depend cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/DependInfo.cmake --color= [ 46%] Built target test_print_book_keeping Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_dense_array_api make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/DependInfo.cmake --color= make -f genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/depend Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 46%] Built target test_array_schema_api Consolidate compiler generated dependencies of target test_sparse_array_api Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/compiler_depend.internal". make -f genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/DependInfo.cmake --color= Consolidate compiler generated dependencies of target test_tiledb_utils Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build Consolidate compiler generated dependencies of target test_codec_filter make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build Consolidate compiler generated dependencies of target test_expressions make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build'. make -f genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_codec make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/compiler_depend.internal". [ 46%] Built target test_sparse_array_api Consolidate compiler generated dependencies of target test_mem_utils make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 46%] Built target test_dense_array_api make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 46%] Built target test_tiledb_utils make -f genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/depend [ 47%] Built target test_expressions [ 49%] Built target test_codec [ 49%] Built target test_codec_filter make -f genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/DependInfo.cmake --color= make -f genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/DependInfo.cmake --color= make -f genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/depend [ 50%] Built target test_mem_utils make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/DependInfo.cmake --color= make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/depend cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/depend cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/DependInfo.cmake --color= Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_utils Consolidate compiler generated dependencies of target test_storage_buffer Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_uri make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/DependInfo.cmake --color= Consolidate compiler generated dependencies of target tiledb_array_aio_read_dense make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/src/storage_manager/test_posixfs.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_posixfs make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build make -f genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_aio_write_dense make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Consolidate compiler generated dependencies of target tiledb_array_consolidate make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 50%] Built target test_utils [ 50%] Built target test_posixfs make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 51%] Built target test_uri make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/depend cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/DependInfo.cmake --color= [ 52%] Built target tiledb_array_aio_read_dense make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/depend cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/depend [ 53%] Built target test_storage_buffer cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/DependInfo.cmake --color= [ 54%] Built target tiledb_array_aio_write_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/depend cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/DependInfo.cmake --color= Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_create_dense [ 54%] Built target tiledb_array_consolidate make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/DependInfo.cmake --color= Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_iterator_dense Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/src/tiledb_array_create_sparse.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_iterator_sparse Consolidate compiler generated dependencies of target tiledb_array_create_sparse make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Consolidate compiler generated dependencies of target tiledb_array_iterator_sparse_filter Consolidate compiler generated dependencies of target tiledb_array_parallel_consolidate_dense make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/src/tiledb_array_parallel_read_dense_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Consolidate compiler generated dependencies of target tiledb_array_parallel_read_dense_1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_parallel_consolidate_sparse make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 55%] Built target tiledb_array_iterator_sparse [ 56%] Built target tiledb_array_create_dense [ 56%] Built target tiledb_array_iterator_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 57%] Built target tiledb_array_create_sparse [ 58%] Built target tiledb_array_iterator_sparse_filter [ 58%] Built target tiledb_array_parallel_consolidate_dense [ 59%] Built target tiledb_array_parallel_read_dense_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/DependInfo.cmake --color= make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/depend cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/DependInfo.cmake --color= make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/DependInfo.cmake --color= make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/DependInfo.cmake --color= make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/depend [ 60%] Built target tiledb_array_parallel_consolidate_sparse make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/depend cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/depend cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/depend cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/DependInfo.cmake --color= Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_parallel_read_dense_2 Consolidate compiler generated dependencies of target tiledb_array_parallel_read_sparse_1 Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Consolidate compiler generated dependencies of target tiledb_array_parallel_read_mpi_io_dense make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/DependInfo.cmake --color= Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_parallel_write_sparse_1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/src/tiledb_array_parallel_read_sparse_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_parallel_read_sparse_2 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_primitive Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Consolidate compiler generated dependencies of target tiledb_array_parallel_write_dense_1 Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_parallel_write_sparse_2 Consolidate compiler generated dependencies of target tiledb_array_parallel_write_dense_2 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_read_dense_1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 61%] Built target tiledb_array_parallel_read_mpi_io_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build [ 62%] Built target tiledb_array_parallel_read_sparse_2 [ 61%] Built target tiledb_array_parallel_read_sparse_1 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 62%] Built target tiledb_array_parallel_read_dense_2 [ 63%] Built target tiledb_array_parallel_write_dense_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/depend cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/DependInfo.cmake --color= [ 64%] Built target tiledb_array_parallel_write_sparse_2 [ 65%] Built target tiledb_array_parallel_write_sparse_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/depend [ 65%] Built target tiledb_array_parallel_write_dense_2 [ 65%] Built target tiledb_array_primitive make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/DependInfo.cmake --color= make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/depend [ 66%] Built target tiledb_array_read_dense_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/depend Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/DependInfo.cmake --color= Consolidate compiler generated dependencies of target tiledb_array_read_dense_2 Consolidate compiler generated dependencies of target tiledb_array_read_dense_3 Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build Consolidate compiler generated dependencies of target tiledb_array_read_dense_sorted make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/depend make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_read_sparse_1 Consolidate compiler generated dependencies of target tiledb_array_read_sparse_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/depend make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_read_sparse_filter_1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 66%] Built target tiledb_array_read_dense_3 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/DependInfo.cmake --color= make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 67%] Built target tiledb_array_read_dense_sorted [ 68%] Built target tiledb_array_read_dense_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/depend Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_read_sparse_filter_2 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 68%] Built target tiledb_array_read_sparse_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/DependInfo.cmake --color= make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/DependInfo.cmake --color= [ 69%] Built target tiledb_array_read_sparse_2 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/DependInfo.cmake --color= make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/DependInfo.cmake --color= make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/depend Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_read_sparse_sorted Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_update_dense_1 Consolidate compiler generated dependencies of target tiledb_array_update_dense_2 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 70%] Built target tiledb_array_read_sparse_filter_1 Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build Consolidate compiler generated dependencies of target tiledb_array_update_sparse_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 70%] Built target tiledb_array_read_sparse_filter_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/depend Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_update_sparse_1 Consolidate compiler generated dependencies of target tiledb_array_write_dense_1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 71%] Built target tiledb_array_read_sparse_sorted [ 72%] Built target tiledb_array_update_sparse_2 [ 72%] Built target tiledb_array_update_dense_2 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/DependInfo.cmake --color= make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/depend make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build'. cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/DependInfo.cmake --color= [ 73%] Built target tiledb_array_update_dense_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/DependInfo.cmake --color= make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/DependInfo.cmake --color= make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/DependInfo.cmake --color= Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_write_dense_2 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/compiler_depend.internal". [ 74%] Built target tiledb_array_update_sparse_1 Consolidate compiler generated dependencies of target tiledb_array_write_dense_sorted make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/DependInfo.cmake --color= Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_write_sparse_1 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Consolidate compiler generated dependencies of target tiledb_array_write_sparse_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 74%] Built target tiledb_array_write_dense_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_write_sparse_3 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build [ 75%] Built target tiledb_array_write_dense_2 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Consolidate compiler generated dependencies of target tiledb_array_write_sparse_4 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Consolidate compiler generated dependencies of target tiledb_catching_errors make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/depend [ 75%] Built target tiledb_array_write_dense_sorted [ 76%] Built target tiledb_array_write_sparse_2 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 77%] Built target tiledb_array_write_sparse_3 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/depend cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/DependInfo.cmake --color= [ 77%] Built target tiledb_array_write_sparse_1 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/DependInfo.cmake --color= make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/depend [ 78%] Built target tiledb_array_write_sparse_4 [ 79%] Built target tiledb_catching_errors make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/depend cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/depend cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/DependInfo.cmake --color= Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_config Consolidate compiler generated dependencies of target tiledb_clear_delete_move make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/depend cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_delete make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_ls_workspaces Consolidate compiler generated dependencies of target tiledb_ls make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/DependInfo.cmake --color= make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build Consolidate compiler generated dependencies of target tiledb_metadata_consolidate make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_metadata_create make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build'. make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 80%] Built target tiledb_delete [ 81%] Built target tiledb_config [ 81%] Built target tiledb_clear_delete_move make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/depend [ 81%] Built target tiledb_ls make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/depend cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/DependInfo.cmake --color= [ 83%] Built target tiledb_metadata_consolidate [ 83%] Built target tiledb_ls_workspaces [ 83%] Built target tiledb_metadata_create make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/depend cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/DependInfo.cmake --color= make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/DependInfo.cmake --color= make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/DependInfo.cmake --color= Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_metadata_primitive Consolidate compiler generated dependencies of target tiledb_metadata_update Consolidate compiler generated dependencies of target tiledb_metadata_iterator make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f src/main/CMakeFiles/tiledbgenomicsdb.dir/build.make src/main/CMakeFiles/tiledbgenomicsdb.dir/depend make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/src/main /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/tiledbgenomicsdb.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_metadata_read make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/src/tiledb_workspace_group_create.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_metadata_write Consolidate compiler generated dependencies of target tiledb_workspace_group_create make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f src/main/CMakeFiles/tiledbgenomicsdb.dir/build.make src/main/CMakeFiles/tiledbgenomicsdb.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'src/main/CMakeFiles/tiledbgenomicsdb.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 84%] Built target tiledb_metadata_iterator make -f src/main/CMakeFiles/genomicsdb.dir/build.make src/main/CMakeFiles/genomicsdb.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/src/main /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/genomicsdb.dir/DependInfo.cmake --color= [ 85%] Built target tiledb_metadata_read [ 86%] Built target tiledb_metadata_update [ 86%] Built target tiledb_metadata_write [ 86%] Built target tiledb_metadata_primitive make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f src/main/CMakeFiles/genomicsdb.dir/build.make src/main/CMakeFiles/genomicsdb.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'src/main/CMakeFiles/genomicsdb.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 87%] Built target tiledb_workspace_group_create [ 87%] Built target tiledbgenomicsdb make -f src/main/CMakeFiles/genomicsdbjni.dir/build.make src/main/CMakeFiles/genomicsdbjni.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/src/main /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/DependInfo.cmake --color= [ 88%] Built target genomicsdb make -f src/test/cpp/CMakeFiles/ctests.dir/build.make src/test/cpp/CMakeFiles/ctests.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/DependInfo.cmake --color= Dependencies file "src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBImporter.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/compiler_depend.internal". make -f src/test/cpp/CMakeFiles/api_tests.dir/build.make src/test/cpp/CMakeFiles/api_tests.dir/depend Dependencies file "src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f tools/CMakeFiles/create_genomicsdb_workspace.dir/build.make tools/CMakeFiles/create_genomicsdb_workspace.dir/depend cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/src/test/cpp /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp/CMakeFiles/api_tests.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f tools/CMakeFiles/gt_mpi_gather.dir/build.make tools/CMakeFiles/gt_mpi_gather.dir/depend cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/tools /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools/CMakeFiles/create_genomicsdb_workspace.dir/DependInfo.cmake --color= make -f tools/CMakeFiles/vcf2genomicsdb_init.dir/build.make tools/CMakeFiles/vcf2genomicsdb_init.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/tools /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools/CMakeFiles/gt_mpi_gather.dir/DependInfo.cmake --color= Consolidate compiler generated dependencies of target genomicsdbjni make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f tools/CMakeFiles/vcf2genomicsdb.dir/build.make tools/CMakeFiles/vcf2genomicsdb.dir/depend cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/tools /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools/CMakeFiles/vcf2genomicsdb_init.dir/DependInfo.cmake --color= Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/ctest_main.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_alleles_combiner.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_bgen.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". make -f src/main/CMakeFiles/genomicsdbjni.dir/build.make src/main/CMakeFiles/genomicsdbjni.dir/build cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/tools /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools/CMakeFiles/vcf2genomicsdb.dir/DependInfo.cmake --color= Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_columnar_gvcf_iterator.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". make -f tools/CMakeFiles/vcfdiff.dir/build.make tools/CMakeFiles/vcfdiff.dir/depend Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_config.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_htslib_plugin.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". make -f tools/CMakeFiles/vcf_histogram.dir/build.make tools/CMakeFiles/vcf_histogram.dir/depend cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/tools /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools/CMakeFiles/vcfdiff.dir/DependInfo.cmake --color= Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_logger.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_multid_vector.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_non_diploid_mapper.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_pb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'src/main/CMakeFiles/genomicsdbjni.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Dependencies file "src/test/cpp/CMakeFiles/api_tests.dir/src/ctest_main.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp/CMakeFiles/api_tests.dir/compiler_depend.internal". Dependencies file "src/test/cpp/CMakeFiles/api_tests.dir/src/test_genomicsdb_api.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/test/cpp/CMakeFiles/api_tests.dir/compiler_depend.internal". Dependencies file "tools/CMakeFiles/create_genomicsdb_workspace.dir/src/create_genomicsdb_workspace.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools/CMakeFiles/create_genomicsdb_workspace.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/tools /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools/CMakeFiles/vcf_histogram.dir/DependInfo.cmake --color= Consolidate compiler generated dependencies of target create_genomicsdb_workspace Consolidate compiler generated dependencies of target api_tests make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Consolidate compiler generated dependencies of target ctests make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f src/test/cpp/CMakeFiles/ctests.dir/build.make src/test/cpp/CMakeFiles/ctests.dir/build Dependencies file "tools/CMakeFiles/vcf2genomicsdb_init.dir/src/vcf2genomicsdb_init.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools/CMakeFiles/vcf2genomicsdb_init.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f tools/CMakeFiles/create_genomicsdb_workspace.dir/build.make tools/CMakeFiles/create_genomicsdb_workspace.dir/build Consolidate compiler generated dependencies of target vcf2genomicsdb_init Dependencies file "tools/CMakeFiles/vcf_histogram.dir/src/vcf_histogram.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools/CMakeFiles/vcf_histogram.dir/compiler_depend.internal". Dependencies file "tools/CMakeFiles/vcf2genomicsdb.dir/src/vcf2genomicsdb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools/CMakeFiles/vcf2genomicsdb.dir/compiler_depend.internal". make -f src/test/cpp/CMakeFiles/api_tests.dir/build.make src/test/cpp/CMakeFiles/api_tests.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'tools/CMakeFiles/create_genomicsdb_workspace.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Consolidate compiler generated dependencies of target vcf2genomicsdb Consolidate compiler generated dependencies of target vcf_histogram make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'src/test/cpp/CMakeFiles/ctests.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f tools/CMakeFiles/vcf2genomicsdb_init.dir/build.make tools/CMakeFiles/vcf2genomicsdb_init.dir/build [ 90%] Built target genomicsdbjni Dependencies file "tools/CMakeFiles/vcfdiff.dir/src/vcfdiff.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools/CMakeFiles/vcfdiff.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'src/test/cpp/CMakeFiles/api_tests.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Consolidate compiler generated dependencies of target vcfdiff make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'tools/CMakeFiles/vcf2genomicsdb_init.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f tools/CMakeFiles/vcf2genomicsdb.dir/build.make tools/CMakeFiles/vcf2genomicsdb.dir/build make -f tools/CMakeFiles/vcfdiff.dir/build.make tools/CMakeFiles/vcfdiff.dir/build make -f tools/CMakeFiles/vcf_histogram.dir/build.make tools/CMakeFiles/vcf_histogram.dir/build Dependencies file "tools/CMakeFiles/gt_mpi_gather.dir/src/gt_mpi_gather.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools/CMakeFiles/gt_mpi_gather.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'tools/CMakeFiles/vcfdiff.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'tools/CMakeFiles/vcf2genomicsdb.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Consolidate compiler generated dependencies of target gt_mpi_gather make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'tools/CMakeFiles/vcf_histogram.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f tools/CMakeFiles/gt_mpi_gather.dir/build.make tools/CMakeFiles/gt_mpi_gather.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'tools/CMakeFiles/gt_mpi_gather.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 95%] Built target create_genomicsdb_workspace [ 95%] Built target api_tests [ 95%] Built target ctests [ 95%] Built target vcf2genomicsdb_init [ 96%] Built target vcfdiff [ 98%] Built target vcf_histogram [ 98%] Built target vcf2genomicsdb make -f tools/CMakeFiles/consolidate_genomicsdb_array.dir/build.make tools/CMakeFiles/consolidate_genomicsdb_array.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/tools /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools/CMakeFiles/consolidate_genomicsdb_array.dir/DependInfo.cmake --color= make -f example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build.make example/CMakeFiles/test_genomicsdb_bcf_generator.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/example /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/example /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/example/CMakeFiles/test_genomicsdb_bcf_generator.dir/DependInfo.cmake --color= make -f example/CMakeFiles/test_genomicsdb_importer.dir/build.make example/CMakeFiles/test_genomicsdb_importer.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.4.4 /build/reproducible-path/genomicsdb-1.4.4/example /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/example /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/example/CMakeFiles/test_genomicsdb_importer.dir/DependInfo.cmake --color= [ 98%] Built target gt_mpi_gather Dependencies file "tools/CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/tools/CMakeFiles/consolidate_genomicsdb_array.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target consolidate_genomicsdb_array Dependencies file "example/CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/example/CMakeFiles/test_genomicsdb_importer.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Consolidate compiler generated dependencies of target test_genomicsdb_importer make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' Dependencies file "example/CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/example/CMakeFiles/test_genomicsdb_bcf_generator.dir/compiler_depend.internal". make -f tools/CMakeFiles/consolidate_genomicsdb_array.dir/build.make tools/CMakeFiles/consolidate_genomicsdb_array.dir/build Consolidate compiler generated dependencies of target test_genomicsdb_bcf_generator make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f example/CMakeFiles/test_genomicsdb_importer.dir/build.make example/CMakeFiles/test_genomicsdb_importer.dir/build make[4]: Nothing to be done for 'tools/CMakeFiles/consolidate_genomicsdb_array.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make -f example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build.make example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'example/CMakeFiles/test_genomicsdb_importer.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' [ 99%] Built target test_genomicsdb_importer [ 99%] Built target test_genomicsdb_bcf_generator [100%] Built target consolidate_genomicsdb_array make[3]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu' # Testing the Java part. We extend LD_LIBRARY_PATH because some test code is # run without surefire. LD_LIBRARY_PATH=":obj-aarch64-linux-gnu/src/main" dh_auto_test --buildsystem=maven /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/build/reproducible-path/genomicsdb-1.4.4 -Dclassworlds.conf=/etc/maven/m2-debian.conf -Dproperties.file.manual=/build/reproducible-path/genomicsdb-1.4.4/debian/maven.properties org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/build/reproducible-path/genomicsdb-1.4.4/debian -Dmaven.repo.local=/build/reproducible-path/genomicsdb-1.4.4/debian/maven-repo --batch-mode test OpenJDK 64-Bit Server VM warning: Options -Xverify:none and -noverify were deprecated in JDK 13 and will likely be removed in a future release. [INFO] Scanning for projects... [WARNING] [WARNING] Some problems were encountered while building the effective model for org.genomicsdb:genomicsdb:jar:1.4.4 [WARNING] 'build.plugins.plugin.(groupId:artifactId)' must be unique but found duplicate declaration of plugin org.apache.maven.plugins:maven-antrun-plugin @ line 235, column 12 [WARNING] [WARNING] It is highly recommended to fix these problems because they threaten the stability of your build. [WARNING] [WARNING] For this reason, future Maven versions might no longer support building such malformed projects. [WARNING] [INFO] [INFO] ---------------------< org.genomicsdb:genomicsdb >---------------------- [INFO] Building org.genomicsdb:genomicsdb 1.4.4 [INFO] --------------------------------[ jar ]--------------------------------- [WARNING] The artifact org.apache.maven.plugins:maven-resources-plugin:jar:2.6 has been relocated to org.apache.maven.plugins:maven-resources-plugin:jar:3.3.0 [WARNING] The artifact com.googlecode.json-simple:json-simple:jar:debian has been relocated to com.github.cliftonlabs:json-simple:jar:debian [INFO] [INFO] --- maven-antrun-plugin:3.1.0:run (exec-protoc) @ genomicsdb --- [INFO] Executing tasks [INFO] Executed tasks [INFO] [INFO] --- build-helper-maven-plugin:3.3.0:add-source (add-source) @ genomicsdb --- [INFO] Source directory: /build/reproducible-path/genomicsdb-1.4.4/build/src/main/java added. [INFO] Source directory: /build/reproducible-path/genomicsdb-1.4.4/src/main/java added. [INFO] Source directory: /build/reproducible-path/genomicsdb-1.4.4/src/main/scala added. [INFO] [INFO] --- maven-resources-plugin:3.3.0:resources (default-resources) @ genomicsdb --- [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.10.1:compile (default-compile) @ genomicsdb --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 30 source files to /build/reproducible-path/genomicsdb-1.4.4/build/classes [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[48,23] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[49,23] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[50,30] org.json.simple.parser.JSONParser in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[51,30] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[48,23] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[49,23] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[50,30] org.json.simple.parser.JSONParser in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[51,30] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[48,23] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[49,23] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[50,30] org.json.simple.parser.JSONParser in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[51,30] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/extensions/VidMapExtensions.java:[253,55] unchecked conversion required: java.util.List found: java.util.ArrayList [WARNING] /build/reproducible-path/genomicsdb-1.4.4/build/src/main/java/org/genomicsdb/model/GenomicsDBExportConfiguration.java:[483,84] PARSER in org.genomicsdb.model.Coordinates.GenomicsDBColumnOrInterval has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/build/src/main/java/org/genomicsdb/model/GenomicsDBExportConfiguration.java:[7297,72] PARSER in org.genomicsdb.model.Coordinates.ContigInterval has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[107,13] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[107,13] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[107,13] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[107,50] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[176,28] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[340,73] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[340,73] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[340,73] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[351,9] org.json.simple.parser.JSONParser in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[351,33] org.json.simple.parser.JSONParser in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[352,9] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[352,30] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[354,9] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[354,41] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[356,13] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[356,36] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[360,17] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[360,40] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[385,44] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[385,44] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[385,44] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[480,17] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[480,45] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[501,9] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[501,41] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[816,58] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[816,58] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/importer/GenomicsDBImporter.java:[816,58] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/reader/GenomicsDBQuery.java:[174,32] unchecked method invocation: method jniQueryVariantCalls in class org.genomicsdb.reader.GenomicsDBQuery is applied to given types required: long,java.lang.String,java.util.List,java.util.List found: long,java.lang.String,java.util.List,java.util.List [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/reader/GenomicsDBQuery.java:[174,63] unchecked conversion required: java.util.List found: java.util.List [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/reader/GenomicsDBQuery.java:[174,87] unchecked conversion required: java.util.List found: java.util.List [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/reader/GenomicsDBQuery.java:[174,32] unchecked conversion required: java.util.List found: java.util.List [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/reader/GenomicsDBQuery.java:[180,32] unchecked method invocation: method jniQueryVariantCalls in class org.genomicsdb.reader.GenomicsDBQuery is applied to given types required: long,java.lang.String,java.util.List,java.util.List found: long,java.lang.String,java.util.List,java.util.List [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/reader/GenomicsDBQuery.java:[180,77] unchecked conversion required: java.util.List found: java.util.List [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/main/java/org/genomicsdb/reader/GenomicsDBQuery.java:[180,32] unchecked conversion required: java.util.List found: java.util.List [INFO] [INFO] --- maven-resources-plugin:3.3.0:testResources (default-testResources) @ genomicsdb --- [INFO] skip non existing resourceDirectory /build/reproducible-path/genomicsdb-1.4.4/src/test/resources [INFO] [INFO] --- maven-antrun-plugin:3.1.0:run (unzip-test-artifacts) @ genomicsdb --- [INFO] Executing tasks [INFO] [untar] Expanding: /build/reproducible-path/genomicsdb-1.4.4/build/test/test.tar into /build/reproducible-path/genomicsdb-1.4.4/build/test [INFO] Executed tasks [INFO] [INFO] --- maven-compiler-plugin:3.10.1:testCompile (default-testCompile) @ genomicsdb --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 12 source files to /build/reproducible-path/genomicsdb-1.4.4/build/test-classes [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[52,23] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[53,23] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[54,30] org.json.simple.parser.JSONParser in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[55,30] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[52,23] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[53,23] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[54,30] org.json.simple.parser.JSONParser in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[55,30] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[52,23] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[53,23] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[54,30] org.json.simple.parser.JSONParser in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[55,30] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[104,43] unchecked conversion required: java.util.Set found: java.util.LinkedHashSet [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[119,43] unchecked conversion required: java.util.Set found: java.util.LinkedHashSet [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[133,43] unchecked conversion required: java.util.Set found: java.util.LinkedHashSet [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[171,9] org.json.simple.parser.JSONParser in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[171,33] org.json.simple.parser.JSONParser in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[175,13] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[175,38] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[176,13] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[176,39] org.json.simple.JSONArray in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[181,17] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[181,44] org.json.simple.JSONObject in org.json.simple has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[195,18] org.json.simple.parser.ParseException in org.json.simple.parser has been deprecated [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[252,79] unchecked conversion required: htsjdk.tribble.CloseableTribbleIterator found: htsjdk.tribble.CloseableTribbleIterator [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[283,79] unchecked conversion required: htsjdk.tribble.CloseableTribbleIterator found: htsjdk.tribble.CloseableTribbleIterator [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[315,76] unchecked conversion required: htsjdk.tribble.CloseableTribbleIterator found: htsjdk.tribble.CloseableTribbleIterator [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[354,81] unchecked conversion required: htsjdk.tribble.CloseableTribbleIterator found: htsjdk.tribble.CloseableTribbleIterator [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[390,79] unchecked conversion required: htsjdk.tribble.CloseableTribbleIterator found: htsjdk.tribble.CloseableTribbleIterator [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[434,81] unchecked conversion required: htsjdk.tribble.CloseableTribbleIterator found: htsjdk.tribble.CloseableTribbleIterator [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[473,79] unchecked conversion required: htsjdk.tribble.CloseableTribbleIterator found: htsjdk.tribble.CloseableTribbleIterator [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/importer/GenomicsDBImporterSpec.java:[526,79] unchecked conversion required: htsjdk.tribble.CloseableTribbleIterator found: htsjdk.tribble.CloseableTribbleIterator [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/model/ImportConfigSpec.java:[65,43] unchecked conversion required: java.util.Set found: java.util.HashSet [WARNING] /build/reproducible-path/genomicsdb-1.4.4/src/test/java/org/genomicsdb/GenomicsDBUtilsTest.java:[36,24] createTempDir() in com.google.common.io.Files has been deprecated [INFO] [INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ genomicsdb --- [INFO] [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running TestSuite GenomicsDB: org.genomicsdb.importer.extensions.VidMapExtensions VCF header has 2 lines with the same field name test_field and header line type -- only the first line is considered by GenomicsDB GenomicsDB: org.genomicsdb.importer.extensions.VidMapExtensions VCF header has 2 lines with the same field name test_field and header line type -- only the first line is considered by GenomicsDB ERROR StatusLogger Reconfiguration failed: No configuration found for '2cdf8d8a' at 'null' in 'null' [INFO] [INFO] Results: [INFO] [INFO] Tests run: 0, Failures: 0, Errors: 0, Skipped: 0 [INFO] [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 16.783 s [INFO] Finished at: 2024-03-19T08:09:26-12:00 [INFO] ------------------------------------------------------------------------ [ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.22.3:test (default-test) on project genomicsdb: There are test failures. [ERROR] [ERROR] Please refer to /build/reproducible-path/genomicsdb-1.4.4/build/surefire-reports for the individual test results. [ERROR] Please refer to dump files (if any exist) [date].dump, [date]-jvmRun[N].dump and [date].dumpstream. [ERROR] The forked VM terminated without properly saying goodbye. VM crash or System.exit called? [ERROR] Command was /bin/sh -c cd '/build/reproducible-path/genomicsdb-1.4.4' && '/usr/lib/jvm/java-17-openjdk-arm64/bin/java' '-Djava.library.path=:obj-aarch64-linux-gnu/src/main:/usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib:/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main' '-jar' '/build/reproducible-path/genomicsdb-1.4.4/build/surefire/surefirebooter12358576022561128530.jar' '/build/reproducible-path/genomicsdb-1.4.4/build/surefire' '2024-03-19T08-09-15_996-jvmRun1' 'surefire5373849955119162524tmp' 'surefire_015042540614019594360tmp' [ERROR] Error occurred in starting fork, check output in log [ERROR] Process Exit Code: 134 [ERROR] Crashed tests: [ERROR] org.genomicsdb.importer.GenomicsDBImporterSpec [ERROR] org.apache.maven.surefire.booter.SurefireBooterForkException: The forked VM terminated without properly saying goodbye. VM crash or System.exit called? [ERROR] Command was /bin/sh -c cd '/build/reproducible-path/genomicsdb-1.4.4' && '/usr/lib/jvm/java-17-openjdk-arm64/bin/java' '-Djava.library.path=:obj-aarch64-linux-gnu/src/main:/usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib:/build/reproducible-path/genomicsdb-1.4.4/obj-aarch64-linux-gnu/src/main' '-jar' '/build/reproducible-path/genomicsdb-1.4.4/build/surefire/surefirebooter12358576022561128530.jar' '/build/reproducible-path/genomicsdb-1.4.4/build/surefire' '2024-03-19T08-09-15_996-jvmRun1' 'surefire5373849955119162524tmp' 'surefire_015042540614019594360tmp' [ERROR] Error occurred in starting fork, check output in log [ERROR] Process Exit Code: 134 [ERROR] Crashed tests: [ERROR] org.genomicsdb.importer.GenomicsDBImporterSpec [ERROR] at org.apache.maven.plugin.surefire.booterclient.ForkStarter.fork(ForkStarter.java:669) [ERROR] at org.apache.maven.plugin.surefire.booterclient.ForkStarter.run(ForkStarter.java:282) [ERROR] at org.apache.maven.plugin.surefire.booterclient.ForkStarter.run(ForkStarter.java:245) [ERROR] at org.apache.maven.plugin.surefire.AbstractSurefireMojo.executeProvider(AbstractSurefireMojo.java:1186) [ERROR] at org.apache.maven.plugin.surefire.AbstractSurefireMojo.executeAfterPreconditionsChecked(AbstractSurefireMojo.java:1014) [ERROR] at org.apache.maven.plugin.surefire.AbstractSurefireMojo.execute(AbstractSurefireMojo.java:860) [ERROR] at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:137) [ERROR] at org.apache.maven.lifecycle.internal.MojoExecutor.doExecute2(MojoExecutor.java:370) [ERROR] at org.apache.maven.lifecycle.internal.MojoExecutor.doExecute(MojoExecutor.java:351) [ERROR] at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:215) [ERROR] at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:171) [ERROR] at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:163) [ERROR] at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:117) [ERROR] at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:81) [ERROR] at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build(SingleThreadedBuilder.java:56) [ERROR] at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:128) [ERROR] at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:298) [ERROR] at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:192) [ERROR] at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:105) [ERROR] at org.apache.maven.cli.MavenCli.execute(MavenCli.java:960) [ERROR] at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:293) [ERROR] at org.apache.maven.cli.MavenCli.main(MavenCli.java:196) [ERROR] at org.apache.maven.cli.MavenCli.main(MavenCli.java:185) [ERROR] at org.debian.maven.Wrapper.main(Wrapper.java:89) [ERROR] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [ERROR] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77) [ERROR] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [ERROR] at java.base/java.lang.reflect.Method.invoke(Method.java:568) [ERROR] at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:322) [ERROR] at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:235) [ERROR] at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:407) [ERROR] at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:348) [ERROR] -> [Help 1] [ERROR] [ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch. [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException dh_auto_test: error: /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/build/reproducible-path/genomicsdb-1.4.4 -Dclassworlds.conf=/etc/maven/m2-debian.conf -Dproperties.file.manual=/build/reproducible-path/genomicsdb-1.4.4/debian/maven.properties org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/build/reproducible-path/genomicsdb-1.4.4/debian -Dmaven.repo.local=/build/reproducible-path/genomicsdb-1.4.4/debian/maven-repo --batch-mode test returned exit code 1 make[1]: *** [debian/rules:66: override_dh_auto_test-indep] Error 25 make[1]: Leaving directory '/build/reproducible-path/genomicsdb-1.4.4' make: *** [debian/rules:17: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2438402 and its subdirectories