I: pbuilder: network access will be disabled during build
I: Current time: Fri Apr 28 06:23:54 +14 2023
I: pbuilder-time-stamp: 1682612634
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
tar: ./bin: time stamp 2024-05-29 06:48:56 is 34302301.68637756 s in the future
tar: ./dev/ptmx: time stamp 2024-05-29 06:48:25 is 34302270.68599288 s in the future
tar: ./dev/pts: time stamp 2024-05-29 06:48:25 is 34302270.68593008 s in the future
tar: ./dev/console: time stamp 2024-05-29 06:48:25 is 34302270.68582992 s in the future
tar: ./dev/tty: time stamp 2024-05-29 06:48:25 is 34302270.6857663 s in the future
tar: ./dev/urandom: time stamp 2024-05-29 06:48:25 is 34302270.68570916 s in the future
tar: ./dev/random: time stamp 2024-05-29 06:48:25 is 34302270.6856544 s in the future
tar: ./dev/full: time stamp 2024-05-29 06:48:25 is 34302270.68560202 s in the future
tar: ./dev/zero: time stamp 2024-05-29 06:48:25 is 34302270.68551606 s in the future
tar: ./dev/null: time stamp 2024-05-29 06:48:25 is 34302270.68545728 s in the future
tar: ./etc/shells: time stamp 2024-05-29 06:48:56 is 34302301.684793 s in the future
tar: ./etc/subgid: time stamp 2024-05-29 06:48:54 is 34302299.68473048 s in the future
tar: ./etc/subuid: time stamp 2024-05-29 06:48:54 is 34302299.68468634 s in the future
tar: ./etc/group: time stamp 2024-05-29 06:48:54 is 34302299.68462528 s in the future
tar: ./etc/group-: time stamp 2024-05-29 06:48:25 is 34302270.6845717 s in the future
tar: ./etc/gshadow: time stamp 2024-05-29 06:48:54 is 34302299.68444464 s in the future
tar: ./etc/passwd: time stamp 2024-05-29 06:48:54 is 34302299.68418196 s in the future
tar: ./etc/passwd-: time stamp 2024-05-29 06:48:25 is 34302270.68410226 s in the future
tar: ./etc/shadow: time stamp 2024-05-29 06:48:54 is 34302299.68399098 s in the future
tar: ./etc/.pwd.lock: time stamp 2024-05-29 06:48:54 is 34302299.68390098 s in the future
tar: ./etc/environment: time stamp 2024-05-29 06:48:54 is 34302299.68385196 s in the future
tar: ./etc/timezone: time stamp 2024-05-29 06:48:48 is 34302293.68376366 s in the future
tar: ./etc/opt: time stamp 2024-05-29 06:48:26 is 34302271.68369024 s in the future
tar: ./etc/fstab: time stamp 2024-05-29 06:48:25 is 34302270.68356104 s in the future
tar: ./etc/init.d: time stamp 2024-05-29 06:48:49 is 34302294.6834661 s in the future
tar: ./etc/perl/Net: time stamp 2024-05-29 06:48:54 is 34302299.68327692 s in the future
tar: ./etc/pam.d/common-session-noninteractive: time stamp 2024-05-29 06:48:54 is 34302299.68318508 s in the future
tar: ./etc/pam.d/common-session: time stamp 2024-05-29 06:48:54 is 34302299.683125 s in the future
tar: ./etc/pam.d/common-password: time stamp 2024-05-29 06:48:54 is 34302299.68306662 s in the future
tar: ./etc/pam.d/common-account: time stamp 2024-05-29 06:48:54 is 34302299.6829867 s in the future
tar: ./etc/pam.d/common-auth: time stamp 2024-05-29 06:48:54 is 34302299.68291672 s in the future
tar: ./etc/pam.d: time stamp 2024-05-29 06:48:54 is 34302299.68246388 s in the future
tar: ./etc/security/opasswd: time stamp 2024-05-29 06:48:54 is 34302299.68234154 s in the future
tar: ./etc/security: time stamp 2024-05-29 06:48:54 is 34302299.68189644 s in the future
tar: ./etc/terminfo: time stamp 2024-05-29 06:48:48 is 34302293.68179938 s in the future
tar: ./etc/selinux: time stamp 2024-05-29 06:48:47 is 34302292.68172028 s in the future
tar: ./etc/cron.d: time stamp 2024-05-29 06:48:49 is 34302294.68079218 s in the future
tar: ./etc/update-motd.d: time stamp 2024-05-29 06:48:49 is 34302294.67906542 s in the future
tar: ./etc/skel: time stamp 2024-05-29 06:48:49 is 34302294.67887468 s in the future
tar: ./etc/dpkg/dpkg.cfg.d/02speedup: time stamp 2024-05-29 06:50:35 is 34302400.67859512 s in the future
tar: ./etc/dpkg/dpkg.cfg.d: time stamp 2024-05-29 06:50:35 is 34302400.67855196 s in the future
tar: ./etc/dpkg/origins/default: time stamp 2024-05-29 06:48:26 is 34302271.6784404 s in the future
tar: ./etc/dpkg/origins: time stamp 2024-05-29 06:48:49 is 34302294.67833126 s in the future
tar: ./etc/default: time stamp 2024-05-29 06:48:54 is 34302299.67815568 s in the future
tar: ./etc/apt/trusted.gpg.d: time stamp 2024-05-29 06:48:47 is 34302292.67711018 s in the future
tar: ./etc/apt/apt.conf.d/80proxy: time stamp 2024-05-29 06:50:35 is 34302400.6768122 s in the future
tar: ./etc/apt/apt.conf.d: time stamp 2024-05-29 06:50:35 is 34302400.67677076 s in the future
tar: ./etc/apt/sources.list: time stamp 2024-05-29 06:50:35 is 34302400.67671654 s in the future
tar: ./etc/apt: time stamp 2024-05-29 06:50:35 is 34302400.67668114 s in the future
tar: ./lib: time stamp 2024-05-29 06:48:56 is 34302301.67659354 s in the future
tar: ./media: time stamp 2024-05-29 06:48:26 is 34302271.67654054 s in the future
tar: ./mnt: time stamp 2024-05-29 06:48:26 is 34302271.67649304 s in the future
tar: ./opt: time stamp 2024-05-29 06:48:26 is 34302271.67644958 s in the future
tar: ./root: time stamp 2024-05-29 06:48:26 is 34302271.67625956 s in the future
tar: ./run/lock: time stamp 2024-05-29 06:48:26 is 34302271.67615948 s in the future
tar: ./run/mount: time stamp 2024-05-29 06:48:25 is 34302270.6761145 s in the future
tar: ./sbin: time stamp 2024-05-29 06:48:56 is 34302301.6760751 s in the future
tar: ./srv: time stamp 2024-05-29 06:48:26 is 34302271.67602922 s in the future
tar: ./usr/local/man: time stamp 2024-05-29 06:48:26 is 34302271.67590208 s in the future
tar: ./usr/local/etc: time stamp 2024-05-29 06:48:26 is 34302271.67585008 s in the future
tar: ./usr/local/src: time stamp 2024-05-29 06:48:26 is 34302271.67580372 s in the future
tar: ./usr/local/sbin: time stamp 2024-05-29 06:48:26 is 34302271.67576068 s in the future
tar: ./usr/local/include: time stamp 2024-05-29 06:48:26 is 34302271.67571918 s in the future
tar: ./usr/local/lib: time stamp 2024-05-29 06:48:26 is 34302271.67567804 s in the future
tar: ./usr/local/games: time stamp 2024-05-29 06:48:26 is 34302271.67563758 s in the future
tar: ./usr/local/bin: time stamp 2024-05-29 06:48:26 is 34302271.67559734 s in the future
tar: ./usr/local/share/man: time stamp 2024-05-29 06:48:26 is 34302271.6755429 s in the future
tar: ./usr/local/share: time stamp 2024-05-29 06:48:26 is 34302271.67551646 s in the future
tar: ./usr/local: time stamp 2024-05-29 06:48:26 is 34302271.67549208 s in the future
tar: ./usr/libexec/dpkg: time stamp 2024-05-29 06:48:35 is 34302280.67535654 s in the future
tar: ./usr/libexec/coreutils: time stamp 2024-05-29 06:48:34 is 34302279.6750154 s in the future
tar: ./usr/libexec: time stamp 2024-05-29 06:48:15 is 34302260.6749756 s in the future
tar: ./usr/share/util-linux/logcheck/ignore.d.server: time stamp 2024-05-29 06:48:46 is 34302290.19300452 s in the future
tar: ./usr/share/zoneinfo/right/Pacific: time stamp 2024-05-29 06:48:45 is 34302289.18677418 s in the future
tar: ./usr/share/zoneinfo/right/Indian: time stamp 2024-05-29 06:48:45 is 34302289.186021 s in the future
tar: ./usr/share/zoneinfo/right/Etc: time stamp 2024-05-29 06:48:45 is 34302289.18141234 s in the future
tar: ./usr/share/zoneinfo/right/Australia: time stamp 2024-05-29 06:48:45 is 34302289.17991086 s in the future
tar: ./usr/share/zoneinfo/right/Atlantic: time stamp 2024-05-29 06:48:45 is 34302289.1792545 s in the future
tar: ./usr/share/zoneinfo/right/America/North_Dakota: time stamp 2024-05-29 06:48:45 is 34302289.16847936 s in the future
tar: ./usr/share/zoneinfo/right/America/Kentucky: time stamp 2024-05-29 06:48:45 is 34302289.16820486 s in the future
tar: ./usr/share/zoneinfo/right/America/Indiana: time stamp 2024-05-29 06:48:45 is 34302289.16769278 s in the future
tar: ./usr/share/zoneinfo/right/America/Argentina: time stamp 2024-05-29 06:48:45 is 34302289.16714422 s in the future
tar: ./usr/share/zoneinfo/right/America: time stamp 2024-05-29 06:48:45 is 34302289.16711026 s in the future
tar: ./usr/share/zoneinfo/right/Africa: time stamp 2024-05-29 06:48:45 is 34302289.16492122 s in the future
tar: ./usr/share/zoneinfo/Pacific: time stamp 2024-05-29 06:48:45 is 34302289.1614769 s in the future
tar: ./usr/share/zoneinfo/Indian: time stamp 2024-05-29 06:48:45 is 34302289.16094594 s in the future
tar: ./usr/share/zoneinfo/Etc: time stamp 2024-05-29 06:48:45 is 34302289.15740918 s in the future
tar: ./usr/share/zoneinfo/Australia: time stamp 2024-05-29 06:48:45 is 34302289.1561327 s in the future
tar: ./usr/share/zoneinfo/Atlantic: time stamp 2024-05-29 06:48:45 is 34302289.15547728 s in the future
tar: ./usr/share/zoneinfo/America/North_Dakota: time stamp 2024-05-29 06:48:45 is 34302289.1435624 s in the future
tar: ./usr/share/zoneinfo/America/Kentucky: time stamp 2024-05-29 06:48:45 is 34302289.14333102 s in the future
tar: ./usr/share/zoneinfo/America/Indiana: time stamp 2024-05-29 06:48:45 is 34302289.14282532 s in the future
tar: ./usr/share/zoneinfo/America/Argentina: time stamp 2024-05-29 06:48:45 is 34302289.14208968 s in the future
tar: ./usr/share/zoneinfo/America: time stamp 2024-05-29 06:48:45 is 34302289.14203884 s in the future
tar: ./usr/share/zoneinfo/Africa: time stamp 2024-05-29 06:48:45 is 34302289.13923618 s in the future
tar: ./usr/share/perl/5.36.0/warnings: time stamp 2024-05-29 06:48:44 is 34302288.1221637 s in the future
tar: ./usr/share/perl/5.36.0/version: time stamp 2024-05-29 06:48:44 is 34302288.12188522 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/XIDS: time stamp 2024-05-29 06:48:44 is 34302288.10597956 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/XIDC: time stamp 2024-05-29 06:48:44 is 34302288.10578614 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/WB: time stamp 2024-05-29 06:48:44 is 34302288.10499542 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Vo: time stamp 2024-05-29 06:48:44 is 34302288.10469784 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/VS: time stamp 2024-05-29 06:48:44 is 34302288.10456008 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Upper: time stamp 2024-05-29 06:48:44 is 34302288.10439916 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/UIdeo: time stamp 2024-05-29 06:48:44 is 34302288.1040925 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Term: time stamp 2024-05-29 06:48:44 is 34302288.10393684 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Scx: time stamp 2024-05-29 06:48:44 is 34302288.10017508 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Sc: time stamp 2024-05-29 06:48:44 is 34302288.09845534 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/STerm: time stamp 2024-05-29 06:48:44 is 34302288.098315 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/SD: time stamp 2024-05-29 06:48:44 is 34302288.09816732 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/SB: time stamp 2024-05-29 06:48:44 is 34302288.09736326 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/QMark: time stamp 2024-05-29 06:48:44 is 34302288.09722212 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Perl: time stamp 2024-05-29 06:48:44 is 34302288.09572512 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/PatSyn: time stamp 2024-05-29 06:48:44 is 34302288.09556626 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/PCM: time stamp 2024-05-29 06:48:44 is 34302288.0954382 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Nv: time stamp 2024-05-29 06:48:44 is 34302288.09188458 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Nt: time stamp 2024-05-29 06:48:44 is 34302288.09161426 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/NFKDQC: time stamp 2024-05-29 06:48:44 is 34302288.09140294 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/NFKCQC: time stamp 2024-05-29 06:48:44 is 34302288.09119434 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/NFDQC: time stamp 2024-05-29 06:48:44 is 34302288.09101606 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/NFCQC: time stamp 2024-05-29 06:48:44 is 34302288.09081264 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Math: time stamp 2024-05-29 06:48:44 is 34302288.09067552 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Lower: time stamp 2024-05-29 06:48:44 is 34302288.09051684 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Lb: time stamp 2024-05-29 06:48:44 is 34302288.08927438 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Jt: time stamp 2024-05-29 06:48:44 is 34302288.08883942 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Jg: time stamp 2024-05-29 06:48:44 is 34302288.0875245 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/InSC: time stamp 2024-05-29 06:48:44 is 34302288.086219 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/InPC: time stamp 2024-05-29 06:48:44 is 34302288.08546268 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/In: time stamp 2024-05-29 06:48:44 is 34302288.08374886 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Ideo: time stamp 2024-05-29 06:48:44 is 34302288.08360276 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/IdType: time stamp 2024-05-29 06:48:44 is 34302288.08284016 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/IdStatus: time stamp 2024-05-29 06:48:44 is 34302288.08261854 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/IDS: time stamp 2024-05-29 06:48:44 is 34302288.08246154 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/IDC: time stamp 2024-05-29 06:48:44 is 34302288.08227436 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Hyphen: time stamp 2024-05-29 06:48:44 is 34302288.0821466 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Hst: time stamp 2024-05-29 06:48:44 is 34302288.08202866 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Hex: time stamp 2024-05-29 06:48:44 is 34302288.0819104 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/GrExt: time stamp 2024-05-29 06:48:44 is 34302288.08176488 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/GrBase: time stamp 2024-05-29 06:48:44 is 34302288.08160018 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Gc: time stamp 2024-05-29 06:48:44 is 34302288.0796299 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/GCB: time stamp 2024-05-29 06:48:44 is 34302288.07913932 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/ExtPict: time stamp 2024-05-29 06:48:44 is 34302288.07899776 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Ext: time stamp 2024-05-29 06:48:44 is 34302288.07885768 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Emoji: time stamp 2024-05-29 06:48:44 is 34302288.07871518 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Ea: time stamp 2024-05-29 06:48:44 is 34302288.07840534 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/EPres: time stamp 2024-05-29 06:48:44 is 34302288.0782724 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/EComp: time stamp 2024-05-29 06:48:44 is 34302288.07813452 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/EBase: time stamp 2024-05-29 06:48:44 is 34302288.07797542 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Dt: time stamp 2024-05-29 06:48:44 is 34302288.07714578 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Dia: time stamp 2024-05-29 06:48:44 is 34302288.07700716 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Dep: time stamp 2024-05-29 06:48:44 is 34302288.07687268 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Dash: time stamp 2024-05-29 06:48:44 is 34302288.07673186 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/DI: time stamp 2024-05-29 06:48:44 is 34302288.07658936 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/CompEx: time stamp 2024-05-29 06:48:44 is 34302288.07643304 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Ccc: time stamp 2024-05-29 06:48:44 is 34302288.07574142 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Cased: time stamp 2024-05-29 06:48:44 is 34302288.07560772 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/CWU: time stamp 2024-05-29 06:48:44 is 34302288.07544302 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/CWT: time stamp 2024-05-29 06:48:44 is 34302288.07529674 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/CWL: time stamp 2024-05-29 06:48:44 is 34302288.07517118 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/CWKCF: time stamp 2024-05-29 06:48:44 is 34302288.07502494 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/CWCM: time stamp 2024-05-29 06:48:44 is 34302288.07489034 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/CWCF: time stamp 2024-05-29 06:48:44 is 34302288.07473422 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/CI: time stamp 2024-05-29 06:48:44 is 34302288.0746044 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/CE: time stamp 2024-05-29 06:48:44 is 34302288.07447208 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Bpt: time stamp 2024-05-29 06:48:44 is 34302288.07423326 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Blk: time stamp 2024-05-29 06:48:44 is 34302288.07408716 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/BidiM: time stamp 2024-05-29 06:48:44 is 34302288.07393952 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/BidiC: time stamp 2024-05-29 06:48:44 is 34302288.073808 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Bc: time stamp 2024-05-29 06:48:44 is 34302288.0730187 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Alpha: time stamp 2024-05-29 06:48:44 is 34302288.07286092 s in the future
tar: ./usr/share/perl/5.36.0/unicore/lib/Age: time stamp 2024-05-29 06:48:44 is 34302288.07164684 s in the future
tar: ./usr/share/perl/5.36.0/unicore/To: time stamp 2024-05-29 06:48:44 is 34302288.06203662 s in the future
tar: ./usr/share/perl/5.36.0/unicore: time stamp 2024-05-29 06:48:44 is 34302288.0619656 s in the future
tar: ./usr/share/perl/5.36.0/pod: time stamp 2024-05-29 06:48:43 is 34302287.0585186 s in the future
tar: ./usr/share/perl/5.36.0/overload: time stamp 2024-05-29 06:48:43 is 34302287.0583578 s in the future
tar: ./usr/share/perl/5.36.0/encoding: time stamp 2024-05-29 06:48:43 is 34302287.05818406 s in the future
tar: ./usr/share/perl/5.36.0/autodie/exception: time stamp 2024-05-29 06:48:43 is 34302287.05765348 s in the future
tar: ./usr/share/perl/5.36.0/autodie/Scope: time stamp 2024-05-29 06:48:43 is 34302287.0574215 s in the future
tar: ./usr/share/perl/5.36.0/autodie: time stamp 2024-05-29 06:48:43 is 34302287.05737334 s in the future
tar: ./usr/share/perl/5.36.0/User: time stamp 2024-05-29 06:48:43 is 34302287.05715022 s in the future
tar: ./usr/share/perl/5.36.0/Unicode/Collate/Locale: time stamp 2024-05-29 06:48:43 is 34302287.02925702 s in the future
tar: ./usr/share/perl/5.36.0/Unicode/Collate/CJK: time stamp 2024-05-29 06:48:43 is 34302287.02131638 s in the future
tar: ./usr/share/perl/5.36.0/Unicode/Collate: time stamp 2024-05-29 06:48:43 is 34302287.02124848 s in the future
tar: ./usr/share/perl/5.36.0/Unicode: time stamp 2024-05-29 06:48:43 is 34302287.02121632 s in the future
tar: ./usr/share/perl/5.36.0/Time: time stamp 2024-05-29 06:48:43 is 34302287.02087672 s in the future
tar: ./usr/share/perl/5.36.0/Tie/Hash: time stamp 2024-05-29 06:48:43 is 34302287.01927996 s in the future
tar: ./usr/share/perl/5.36.0/Tie: time stamp 2024-05-29 06:48:43 is 34302287.01922588 s in the future
tar: ./usr/share/perl/5.36.0/Thread: time stamp 2024-05-29 06:48:43 is 34302287.01901754 s in the future
tar: ./usr/share/perl/5.36.0/Text: time stamp 2024-05-29 06:48:43 is 34302287.01793728 s in the future
tar: ./usr/share/perl/5.36.0/Test2/Util: time stamp 2024-05-29 06:48:43 is 34302287.01615644 s in the future
tar: ./usr/share/perl/5.36.0/Test2/Tools: time stamp 2024-05-29 06:48:43 is 34302287.01596502 s in the future
tar: ./usr/share/perl/5.36.0/Test2/IPC/Driver: time stamp 2024-05-29 06:48:43 is 34302287.01572106 s in the future
tar: ./usr/share/perl/5.36.0/Test2/IPC: time stamp 2024-05-29 06:48:43 is 34302287.01567044 s in the future
tar: ./usr/share/perl/5.36.0/Test2/Hub/Interceptor: time stamp 2024-05-29 06:48:43 is 34302287.01541062 s in the future
tar: ./usr/share/perl/5.36.0/Test2/Hub: time stamp 2024-05-29 06:48:43 is 34302287.01536034 s in the future
tar: ./usr/share/perl/5.36.0/Test2/Formatter: time stamp 2024-05-29 06:48:43 is 34302287.01519452 s in the future
tar: ./usr/share/perl/5.36.0/Test2/EventFacet/Info: time stamp 2024-05-29 06:48:43 is 34302287.01437194 s in the future
tar: ./usr/share/perl/5.36.0/Test2/EventFacet: time stamp 2024-05-29 06:48:43 is 34302287.01431966 s in the future
tar: ./usr/share/perl/5.36.0/Test2/Event/TAP: time stamp 2024-05-29 06:48:43 is 34302287.01340378 s in the future
tar: ./usr/share/perl/5.36.0/Test2/Event: time stamp 2024-05-29 06:48:43 is 34302287.01335076 s in the future
tar: ./usr/share/perl/5.36.0/Test2/API/InterceptResult: time stamp 2024-05-29 06:48:43 is 34302287.01256912 s in the future
tar: ./usr/share/perl/5.36.0/Test2/API: time stamp 2024-05-29 06:48:43 is 34302287.01251646 s in the future
tar: ./usr/share/perl/5.36.0/Test2: time stamp 2024-05-29 06:48:43 is 34302287.01248912 s in the future
tar: ./usr/share/perl/5.36.0/Test/use: time stamp 2024-05-29 06:48:43 is 34302287.01036174 s in the future
tar: ./usr/share/perl/5.36.0/Test/Tester: time stamp 2024-05-29 06:48:43 is 34302287.01009058 s in the future
tar: ./usr/share/perl/5.36.0/Test/Builder/Tester: time stamp 2024-05-29 06:48:43 is 34302287.00968516 s in the future
tar: ./usr/share/perl/5.36.0/Test/Builder/IO: time stamp 2024-05-29 06:48:43 is 34302287.00950982 s in the future
tar: ./usr/share/perl/5.36.0/Test/Builder: time stamp 2024-05-29 06:48:43 is 34302287.00945952 s in the future
tar: ./usr/share/perl/5.36.0/Test: time stamp 2024-05-29 06:48:43 is 34302287.0094244 s in the future
tar: ./usr/share/perl/5.36.0/Term: time stamp 2024-05-29 06:48:43 is 34302287.00862234 s in the future
tar: ./usr/share/perl/5.36.0/TAP/Parser/YAMLish: time stamp 2024-05-29 06:48:43 is 34302287.00659402 s in the future
tar: ./usr/share/perl/5.36.0/TAP/Parser/SourceHandler: time stamp 2024-05-29 06:48:43 is 34302287.00618514 s in the future
tar: ./usr/share/perl/5.36.0/TAP/Parser/Scheduler: time stamp 2024-05-29 06:48:43 is 34302287.0059898 s in the future
tar: ./usr/share/perl/5.36.0/TAP/Parser/Result: time stamp 2024-05-29 06:48:43 is 34302287.00550696 s in the future
tar: ./usr/share/perl/5.36.0/TAP/Parser/Iterator: time stamp 2024-05-29 06:48:43 is 34302287.0052105 s in the future
tar: ./usr/share/perl/5.36.0/TAP/Parser: time stamp 2024-05-29 06:48:43 is 34302287.00515998 s in the future
tar: ./usr/share/perl/5.36.0/TAP/Harness: time stamp 2024-05-29 06:48:43 is 34302287.004934 s in the future
tar: ./usr/share/perl/5.36.0/TAP/Formatter/File: time stamp 2024-05-29 06:48:43 is 34302287.0044759 s in the future
tar: ./usr/share/perl/5.36.0/TAP/Formatter/Console: time stamp 2024-05-29 06:48:43 is 34302287.00422836 s in the future
tar: ./usr/share/perl/5.36.0/TAP/Formatter: time stamp 2024-05-29 06:48:43 is 34302287.00417784 s in the future
tar: ./usr/share/perl/5.36.0/TAP: time stamp 2024-05-29 06:48:43 is 34302287.00414932 s in the future
tar: ./usr/share/perl/5.36.0/Search: time stamp 2024-05-29 06:48:43 is 34302287.0040113 s in the future
tar: ./usr/share/perl/5.36.0/Pod/Text: time stamp 2024-05-29 06:48:43 is 34302286.99979488 s in the future
tar: ./usr/share/perl/5.36.0/Pod/Simple: time stamp 2024-05-29 06:48:43 is 34302286.99530314 s in the future
tar: ./usr/share/perl/5.36.0/Pod/Perldoc: time stamp 2024-05-29 06:48:43 is 34302286.99451516 s in the future
tar: ./usr/share/perl/5.36.0/Pod/Html: time stamp 2024-05-29 06:48:43 is 34302286.9943573 s in the future
tar: ./usr/share/perl/5.36.0/Pod: time stamp 2024-05-29 06:48:43 is 34302286.99431294 s in the future
tar: ./usr/share/perl/5.36.0/PerlIO/via: time stamp 2024-05-29 06:48:43 is 34302286.99416804 s in the future
tar: ./usr/share/perl/5.36.0/Perl: time stamp 2024-05-29 06:48:43 is 34302286.99400944 s in the future
tar: ./usr/share/perl/5.36.0/Parse/CPAN: time stamp 2024-05-29 06:48:43 is 34302286.99383418 s in the future
tar: ./usr/share/perl/5.36.0/Params: time stamp 2024-05-29 06:48:43 is 34302286.99362328 s in the future
tar: ./usr/share/perl/5.36.0/Net/FTP: time stamp 2024-05-29 06:48:43 is 34302286.99017758 s in the future
tar: ./usr/share/perl/5.36.0/Net: time stamp 2024-05-29 06:48:43 is 34302286.9901163 s in the future
tar: ./usr/share/perl/5.36.0/Module/Load: time stamp 2024-05-29 06:48:43 is 34302286.98252984 s in the future
tar: ./usr/share/perl/5.36.0/Module/CoreList: time stamp 2024-05-29 06:48:43 is 34302286.98230682 s in the future
tar: ./usr/share/perl/5.36.0/Module: time stamp 2024-05-29 06:48:43 is 34302286.98225922 s in the future
tar: ./usr/share/perl/5.36.0/Memoize: time stamp 2024-05-29 06:48:43 is 34302286.9817791 s in the future
tar: ./usr/share/perl/5.36.0/Math/BigRat: time stamp 2024-05-29 06:48:43 is 34302286.97582694 s in the future
tar: ./usr/share/perl/5.36.0/Math/BigInt: time stamp 2024-05-29 06:48:43 is 34302286.97420944 s in the future
tar: ./usr/share/perl/5.36.0/Math/BigFloat: time stamp 2024-05-29 06:48:43 is 34302286.97406364 s in the future
tar: ./usr/share/perl/5.36.0/Math: time stamp 2024-05-29 06:48:43 is 34302286.974019 s in the future
tar: ./usr/share/perl/5.36.0/Locale/Maketext: time stamp 2024-05-29 06:48:43 is 34302286.9723821 s in the future
tar: ./usr/share/perl/5.36.0/Locale: time stamp 2024-05-29 06:48:43 is 34302286.97230826 s in the future
tar: ./usr/share/perl/5.36.0/JSON/PP: time stamp 2024-05-29 06:48:43 is 34302286.97141134 s in the future
tar: ./usr/share/perl/5.36.0/JSON: time stamp 2024-05-29 06:48:43 is 34302286.97135958 s in the future
tar: ./usr/share/perl/5.36.0/IPC: time stamp 2024-05-29 06:48:43 is 34302286.97035486 s in the future
tar: ./usr/share/perl/5.36.0/IO/Uncompress/Adapter: time stamp 2024-05-29 06:48:43 is 34302286.9675021 s in the future
tar: ./usr/share/perl/5.36.0/IO/Uncompress: time stamp 2024-05-29 06:48:43 is 34302286.96744346 s in the future
tar: ./usr/share/perl/5.36.0/IO/Socket: time stamp 2024-05-29 06:48:43 is 34302286.96725216 s in the future
tar: ./usr/share/perl/5.36.0/IO/Compress/Zlib: time stamp 2024-05-29 06:48:43 is 34302286.96503656 s in the future
tar: ./usr/share/perl/5.36.0/IO/Compress/Zip: time stamp 2024-05-29 06:48:43 is 34302286.96488872 s in the future
tar: ./usr/share/perl/5.36.0/IO/Compress/Gzip: time stamp 2024-05-29 06:48:43 is 34302286.96475154 s in the future
tar: ./usr/share/perl/5.36.0/IO/Compress/Base: time stamp 2024-05-29 06:48:43 is 34302286.96458292 s in the future
tar: ./usr/share/perl/5.36.0/IO/Compress/Adapter: time stamp 2024-05-29 06:48:43 is 34302286.96431998 s in the future
tar: ./usr/share/perl/5.36.0/IO/Compress: time stamp 2024-05-29 06:48:43 is 34302286.96426956 s in the future
tar: ./usr/share/perl/5.36.0/IO: time stamp 2024-05-29 06:48:43 is 34302286.96423314 s in the future
tar: ./usr/share/perl/5.36.0/I18N/LangTags: time stamp 2024-05-29 06:48:43 is 34302286.96380576 s in the future
tar: ./usr/share/perl/5.36.0/I18N: time stamp 2024-05-29 06:48:43 is 34302286.96375586 s in the future
tar: ./usr/share/perl/5.36.0/HTTP: time stamp 2024-05-29 06:48:43 is 34302286.96285496 s in the future
tar: ./usr/share/perl/5.36.0/Getopt: time stamp 2024-05-29 06:48:43 is 34302286.961759 s in the future
tar: ./usr/share/perl/5.36.0/Filter: time stamp 2024-05-29 06:48:43 is 34302286.9613346 s in the future
tar: ./usr/share/perl/5.36.0/File: time stamp 2024-05-29 06:48:43 is 34302286.95796414 s in the future
tar: ./usr/share/perl/5.36.0/ExtUtils/Typemaps: time stamp 2024-05-29 06:48:43 is 34302286.94912936 s in the future
tar: ./usr/share/perl/5.36.0/ExtUtils/ParseXS: time stamp 2024-05-29 06:48:43 is 34302286.94876074 s in the future
tar: ./usr/share/perl/5.36.0/ExtUtils/MakeMaker: time stamp 2024-05-29 06:48:43 is 34302286.94831406 s in the future
tar: ./usr/share/perl/5.36.0/ExtUtils/Liblist: time stamp 2024-05-29 06:48:43 is 34302286.94811966 s in the future
tar: ./usr/share/perl/5.36.0/ExtUtils/Constant: time stamp 2024-05-29 06:48:43 is 34302286.94743282 s in the future
tar: ./usr/share/perl/5.36.0/ExtUtils/Command: time stamp 2024-05-29 06:48:43 is 34302286.94726616 s in the future
tar: ./usr/share/perl/5.36.0/ExtUtils/CBuilder/Platform/Windows: time stamp 2024-05-29 06:48:43 is 34302286.9463775 s in the future
tar: ./usr/share/perl/5.36.0/ExtUtils/CBuilder/Platform: time stamp 2024-05-29 06:48:43 is 34302286.94632174 s in the future
tar: ./usr/share/perl/5.36.0/ExtUtils/CBuilder: time stamp 2024-05-29 06:48:43 is 34302286.94629034 s in the future
tar: ./usr/share/perl/5.36.0/ExtUtils: time stamp 2024-05-29 06:48:43 is 34302286.94626252 s in the future
tar: ./usr/share/perl/5.36.0/Exporter: time stamp 2024-05-29 06:48:43 is 34302286.94612548 s in the future
tar: ./usr/share/perl/5.36.0/Encode: time stamp 2024-05-29 06:48:43 is 34302286.94530414 s in the future
tar: ./usr/share/perl/5.36.0/Digest: time stamp 2024-05-29 06:48:43 is 34302286.94512194 s in the future
tar: ./usr/share/perl/5.36.0/Devel: time stamp 2024-05-29 06:48:43 is 34302286.94496148 s in the future
tar: ./usr/share/perl/5.36.0/DBM_Filter: time stamp 2024-05-29 06:48:43 is 34302286.94462704 s in the future
tar: ./usr/share/perl/5.36.0/Config/Perl: time stamp 2024-05-29 06:48:43 is 34302286.94438724 s in the future
tar: ./usr/share/perl/5.36.0/Config: time stamp 2024-05-29 06:48:43 is 34302286.94432172 s in the future
tar: ./usr/share/perl/5.36.0/Compress: time stamp 2024-05-29 06:48:43 is 34302286.9441213 s in the future
tar: ./usr/share/perl/5.36.0/Class: time stamp 2024-05-29 06:48:43 is 34302286.94395334 s in the future
tar: ./usr/share/perl/5.36.0/Carp: time stamp 2024-05-29 06:48:43 is 34302286.94383268 s in the future
tar: ./usr/share/perl/5.36.0/CPAN/Plugin: time stamp 2024-05-29 06:48:43 is 34302286.9375091 s in the future
tar: ./usr/share/perl/5.36.0/CPAN/Meta/History: time stamp 2024-05-29 06:48:43 is 34302286.93491226 s in the future
tar: ./usr/share/perl/5.36.0/CPAN/Meta: time stamp 2024-05-29 06:48:43 is 34302286.93485166 s in the future
tar: ./usr/share/perl/5.36.0/CPAN/LWP: time stamp 2024-05-29 06:48:43 is 34302286.93471978 s in the future
tar: ./usr/share/perl/5.36.0/CPAN/Kwalify: time stamp 2024-05-29 06:48:43 is 34302286.93454046 s in the future
tar: ./usr/share/perl/5.36.0/CPAN/HTTP: time stamp 2024-05-29 06:48:43 is 34302286.93432658 s in the future
tar: ./usr/share/perl/5.36.0/CPAN/FTP: time stamp 2024-05-29 06:48:43 is 34302286.93419032 s in the future
tar: ./usr/share/perl/5.36.0/CPAN/Exception: time stamp 2024-05-29 06:48:43 is 34302286.93389174 s in the future
tar: ./usr/share/perl/5.36.0/CPAN/API: time stamp 2024-05-29 06:48:43 is 34302286.933758 s in the future
tar: ./usr/share/perl/5.36.0/CPAN: time stamp 2024-05-29 06:48:43 is 34302286.93371158 s in the future
tar: ./usr/share/perl/5.36.0/B: time stamp 2024-05-29 06:48:43 is 34302286.93158588 s in the future
tar: ./usr/share/perl/5.36.0/Attribute: time stamp 2024-05-29 06:48:43 is 34302286.93086298 s in the future
tar: ./usr/share/perl/5.36.0/Archive/Tar: time stamp 2024-05-29 06:48:43 is 34302286.92968264 s in the future
tar: ./usr/share/perl/5.36.0/Archive: time stamp 2024-05-29 06:48:43 is 34302286.92963046 s in the future
tar: ./usr/share/perl/5.36.0/App/Prove/State/Result: time stamp 2024-05-29 06:48:43 is 34302286.92883098 s in the future
tar: ./usr/share/perl/5.36.0/App/Prove/State: time stamp 2024-05-29 06:48:43 is 34302286.92878172 s in the future
tar: ./usr/share/perl/5.36.0/App/Prove: time stamp 2024-05-29 06:48:43 is 34302286.92875472 s in the future
tar: ./usr/share/perl/5.36.0/App: time stamp 2024-05-29 06:48:43 is 34302286.92872628 s in the future
tar: ./usr/share/perl/5.36.0: time stamp 2024-05-29 06:48:44 is 34302287.92869812 s in the future
tar: ./usr/share/pam: time stamp 2024-05-29 06:48:41 is 34302284.92820974 s in the future
tar: ./usr/share/pam-configs: time stamp 2024-05-29 06:48:41 is 34302284.9280745 s in the future
tar: ./usr/share/tabset: time stamp 2024-05-29 06:48:40 is 34302283.9278537 s in the future
tar: ./usr/share/libgcrypt20: time stamp 2024-05-29 06:48:38 is 34302281.92776808 s in the future
tar: ./usr/share/libc-bin: time stamp 2024-05-29 06:48:36 is 34302279.9276834 s in the future
tar: ./usr/share/gcc/python/libstdcxx/v6: time stamp 2024-05-29 06:48:36 is 34302279.92661296 s in the future
tar: ./usr/share/gcc/python/libstdcxx: time stamp 2024-05-29 06:48:36 is 34302279.92656762 s in the future
tar: ./usr/share/polkit-1/actions: time stamp 2024-05-29 06:48:35 is 34302278.92643422 s in the future
tar: ./usr/share/dpkg/sh: time stamp 2024-05-29 06:48:35 is 34302278.9257678 s in the future
tar: ./usr/share/keyrings: time stamp 2024-05-29 06:48:34 is 34302277.9228161 s in the future
tar: ./usr/share/pixmaps: time stamp 2024-05-29 06:48:34 is 34302277.922683 s in the future
tar: ./usr/share/perl5/Text: time stamp 2024-05-29 06:48:39 is 34302282.91552546 s in the future
tar: ./usr/share/perl5/Number: time stamp 2024-05-29 06:48:39 is 34302282.91537456 s in the future
tar: ./usr/share/perl5/File/Find/Rule: time stamp 2024-05-29 06:48:38 is 34302281.9151082 s in the future
tar: ./usr/share/perl5/File/Find: time stamp 2024-05-29 06:48:38 is 34302281.91506224 s in the future
tar: ./usr/share/perl5/Debian/DebConf/Client: time stamp 2024-05-29 06:48:34 is 34302277.91484388 s in the future
tar: ./usr/share/perl5/Debconf/Template: time stamp 2024-05-29 06:48:34 is 34302277.91369184 s in the future
tar: ./usr/share/perl5/Debconf/FrontEnd: time stamp 2024-05-29 06:48:34 is 34302277.91292118 s in the future
tar: ./usr/share/perl5/Debconf/Format: time stamp 2024-05-29 06:48:34 is 34302277.91278568 s in the future
tar: ./usr/share/perl5/Debconf/Element/Web: time stamp 2024-05-29 06:48:34 is 34302277.91196708 s in the future
tar: ./usr/share/perl5/Debconf/Element/Teletype: time stamp 2024-05-29 06:48:34 is 34302277.91138506 s in the future
tar: ./usr/share/perl5/Debconf/Element/Noninteractive: time stamp 2024-05-29 06:48:34 is 34302277.91084782 s in the future
tar: ./usr/share/perl5/Debconf/Element/Gnome: time stamp 2024-05-29 06:48:34 is 34302277.91026322 s in the future
tar: ./usr/share/perl5/Debconf/Element/Editor: time stamp 2024-05-29 06:48:34 is 34302277.90973596 s in the future
tar: ./usr/share/perl5/Debconf/Element/Dialog: time stamp 2024-05-29 06:48:34 is 34302277.90918268 s in the future
tar: ./usr/share/perl5/Debconf/Element: time stamp 2024-05-29 06:48:34 is 34302277.9091341 s in the future
tar: ./usr/share/perl5/Debconf/DbDriver: time stamp 2024-05-29 06:48:34 is 34302277.90841476 s in the future
tar: ./usr/share/perl5/Debconf/Client: time stamp 2024-05-29 06:48:34 is 34302277.90825666 s in the future
tar: ./usr/share/perl5/Debconf: time stamp 2024-05-29 06:48:34 is 34302277.90820832 s in the future
tar: ./usr/share/debconf: time stamp 2024-05-29 06:48:34 is 34302277.90785024 s in the future
tar: ./usr/share/debianutils/shells.d: time stamp 2024-05-29 06:48:34 is 34302277.90743716 s in the future
tar: ./usr/share/debianutils: time stamp 2024-05-29 06:48:34 is 34302277.90739082 s in the future
tar: ./usr/share/doc-base: time stamp 2024-05-29 06:48:35 is 34302278.90721054 s in the future
tar: ./usr/share/base-passwd: time stamp 2024-05-29 06:48:32 is 34302275.90704132 s in the future
tar: ./usr/share/info: time stamp 2024-05-29 06:48:44 is 34302287.90071074 s in the future
tar: ./usr/share/common-licenses: time stamp 2024-05-29 06:48:32 is 34302275.89836816 s in the future
tar: ./usr/share/base-files: time stamp 2024-05-29 06:48:32 is 34302275.89791342 s in the future
tar: ./usr/share/man/pt_BR/man8: time stamp 2024-05-29 06:48:44 is 34302287.8966087 s in the future
tar: ./usr/share/man/pt_BR/man5: time stamp 2024-05-29 06:48:44 is 34302287.89639568 s in the future
tar: ./usr/share/man/fi/man1: time stamp 2024-05-29 06:48:44 is 34302287.89512228 s in the future
tar: ./usr/share/man/zh_TW/man8: time stamp 2024-05-29 06:48:44 is 34302287.89465352 s in the future
tar: ./usr/share/man/zh_TW/man5: time stamp 2024-05-29 06:48:44 is 34302287.894508 s in the future
tar: ./usr/share/man/zh_TW/man1: time stamp 2024-05-29 06:48:44 is 34302287.89430516 s in the future
tar: ./usr/share/man/zh_TW: time stamp 2024-05-29 06:48:23 is 34302266.8942607 s in the future
tar: ./usr/share/man/zh_CN/man8: time stamp 2024-05-29 06:48:44 is 34302287.8931255 s in the future
tar: ./usr/share/man/zh_CN/man5: time stamp 2024-05-29 06:48:44 is 34302287.89277974 s in the future
tar: ./usr/share/man/zh_CN/man1: time stamp 2024-05-29 06:48:44 is 34302287.89217748 s in the future
tar: ./usr/share/man/uk/man8: time stamp 2024-05-29 06:48:44 is 34302287.89095484 s in the future
tar: ./usr/share/man/uk/man5: time stamp 2024-05-29 06:48:44 is 34302287.89060056 s in the future
tar: ./usr/share/man/tr/man8: time stamp 2024-05-29 06:48:44 is 34302287.88885068 s in the future
tar: ./usr/share/man/tr/man5: time stamp 2024-05-29 06:48:44 is 34302287.88866084 s in the future
tar: ./usr/share/man/tr/man1: time stamp 2024-05-29 06:48:44 is 34302287.88836584 s in the future
tar: ./usr/share/man/tr: time stamp 2024-05-29 06:48:23 is 34302266.88829874 s in the future
tar: ./usr/share/man/ko/man8: time stamp 2024-05-29 06:48:44 is 34302287.88812016 s in the future
tar: ./usr/share/man/ko/man5: time stamp 2024-05-29 06:48:44 is 34302287.88799542 s in the future
tar: ./usr/share/man/ko: time stamp 2024-05-29 06:48:23 is 34302266.88694286 s in the future
tar: ./usr/share/man/id/man8: time stamp 2024-05-29 06:48:44 is 34302287.88678814 s in the future
tar: ./usr/share/man/id/man1: time stamp 2024-05-29 06:48:44 is 34302287.88659176 s in the future
tar: ./usr/share/man/id: time stamp 2024-05-29 06:48:23 is 34302266.88654692 s in the future
tar: ./usr/share/man/da/man5: time stamp 2024-05-29 06:48:44 is 34302287.88640772 s in the future
tar: ./usr/share/man/da/man8: time stamp 2024-05-29 06:48:44 is 34302287.88613796 s in the future
tar: ./usr/share/man/da: time stamp 2024-05-29 06:48:23 is 34302266.88557652 s in the future
tar: ./usr/share/man/cs/man1: time stamp 2024-05-29 06:48:44 is 34302287.8853446 s in the future
tar: ./usr/share/man/cs/man5: time stamp 2024-05-29 06:48:44 is 34302287.88452392 s in the future
tar: ./usr/share/man/sv/man8: time stamp 2024-05-29 06:48:44 is 34302287.87887524 s in the future
tar: ./usr/share/man/hu/man8: time stamp 2024-05-29 06:48:44 is 34302287.87450658 s in the future
tar: ./usr/share/man/hu/man1: time stamp 2024-05-29 06:48:44 is 34302287.87412782 s in the future
tar: ./usr/share/man/hu/man5: time stamp 2024-05-29 06:48:44 is 34302287.8739609 s in the future
tar: ./usr/share/man/hu: time stamp 2024-05-29 06:48:23 is 34302266.87392188 s in the future
tar: ./usr/share/man/sl/man8: time stamp 2024-05-29 06:48:34 is 34302277.87366156 s in the future
tar: ./usr/share/man/ru/man5: time stamp 2024-05-29 06:48:44 is 34302287.87282896 s in the future
tar: ./usr/share/man/ru: time stamp 2024-05-29 06:48:23 is 34302266.87176202 s in the future
tar: ./usr/share/locale/zu/LC_MESSAGES: time stamp 2024-05-29 06:48:41 is 34302284.79042182 s in the future
tar: ./usr/share/locale/zh_HK/LC_MESSAGES: time stamp 2024-05-29 06:48:41 is 34302284.79023406 s in the future
tar: ./usr/share/locale/yo/LC_MESSAGES: time stamp 2024-05-29 06:48:41 is 34302284.79009916 s in the future
tar: ./usr/share/locale/ur/LC_MESSAGES: time stamp 2024-05-29 06:48:41 is 34302284.78996618 s in the future
tar: ./usr/share/locale/tg/LC_MESSAGES: time stamp 2024-05-29 06:48:41 is 34302284.78986234 s in the future
tar: ./usr/share/locale/te/LC_MESSAGES: time stamp 2024-05-29 06:48:41 is 34302284.78974016 s in the future
tar: ./usr/share/locale/sr@latin/LC_MESSAGES: time stamp 2024-05-29 06:48:41 is 34302284.78960656 s in the future
tar: ./usr/share/locale/sq/LC_MESSAGES: time stamp 2024-05-29 06:48:44 is 34302287.78946564 s in the future
tar: ./usr/share/locale/si/LC_MESSAGES: time stamp 2024-05-29 06:48:41 is 34302284.78933824 s in the future
tar: ./usr/share/locale/or/LC_MESSAGES: time stamp 2024-05-29 06:48:41 is 34302284.78919384 s in the future
tar: ./usr/share/locale/my/LC_MESSAGES: time stamp 2024-05-29 06:48:41 is 34302284.78908232 s in the future
tar: ./usr/share/locale/mn/LC_MESSAGES: time stamp 2024-05-29 06:48:41 is 34302284.78898238 s in the future
tar: ./usr/share/locale/ml/LC_MESSAGES: time stamp 2024-05-29 06:48:41 is 34302284.78883048 s in the future
tar: ./usr/share/locale/mk/LC_MESSAGES: time stamp 2024-05-29 06:48:41 is 34302284.7887097 s in the future
tar: ./usr/share/locale/kw_GB/LC_MESSAGES: time stamp 2024-05-29 06:48:41 is 34302284.78859108 s in the future
tar: ./usr/share/locale/kn/LC_MESSAGES: time stamp 2024-05-29 06:48:41 is 34302284.7884112 s in the future
tar: ./usr/share/locale/is/LC_MESSAGES: time stamp 2024-05-29 06:48:41 is 34302284.78823724 s in the future
tar: ./usr/share/locale/hi/LC_MESSAGES: time stamp 2024-05-29 06:48:41 is 34302284.78806028 s in the future
tar: ./usr/share/locale/gu/LC_MESSAGES: time stamp 2024-05-29 06:48:41 is 34302284.78789314 s in the future
tar: ./usr/share/locale/fa/LC_MESSAGES: time stamp 2024-05-29 06:48:41 is 34302284.78775032 s in the future
tar: ./usr/share/locale/de_CH/LC_MESSAGES: time stamp 2024-05-29 06:48:41 is 34302284.78759342 s in the future
tar: ./usr/share/locale/bn_IN/LC_MESSAGES: time stamp 2024-05-29 06:48:41 is 34302284.78741074 s in the future
tar: ./usr/share/locale/bn/LC_MESSAGES: time stamp 2024-05-29 06:48:41 is 34302284.7872378 s in the future
tar: ./usr/share/locale/az/LC_MESSAGES: time stamp 2024-05-29 06:48:41 is 34302284.78709224 s in the future
tar: ./usr/share/locale/as/LC_MESSAGES: time stamp 2024-05-29 06:48:41 is 34302284.78692658 s in the future
tar: ./usr/share/locale/am/LC_MESSAGES: time stamp 2024-05-29 06:48:41 is 34302284.78678072 s in the future
tar: ./usr/share/locale/fur/LC_MESSAGES: time stamp 2024-05-29 06:48:38 is 34302281.78663808 s in the future
tar: ./usr/share/locale/ta/LC_MESSAGES: time stamp 2024-05-29 06:48:41 is 34302284.78637802 s in the future
tar: ./usr/share/locale/ky/LC_MESSAGES: time stamp 2024-05-29 06:48:45 is 34302288.7859297 s in the future
tar: ./usr/share/locale/pa/LC_MESSAGES: time stamp 2024-05-29 06:48:41 is 34302284.78276826 s in the future
tar: ./usr/share/locale/oc/LC_MESSAGES: time stamp 2024-05-29 06:48:35 is 34302278.78204218 s in the future
tar: ./usr/share/locale/lv/LC_MESSAGES: time stamp 2024-05-29 06:48:41 is 34302284.78160858 s in the future
tar: ./usr/share/locale/lg/LC_MESSAGES: time stamp 2024-05-29 06:48:35 is 34302278.77712122 s in the future
tar: ./usr/share/locale/kk/LC_MESSAGES: time stamp 2024-05-29 06:48:44 is 34302287.77586474 s in the future
tar: ./usr/share/locale/et/LC_MESSAGES: time stamp 2024-05-29 06:48:45 is 34302288.69949852 s in the future
tar: ./usr/share/locale/en@quot/LC_MESSAGES: time stamp 2024-05-29 06:48:33 is 34302276.6877923 s in the future
tar: ./usr/share/locale/en@boldquot/LC_MESSAGES: time stamp 2024-05-29 06:48:33 is 34302276.68589468 s in the future
tar: ./usr/share/locale/af/LC_MESSAGES: time stamp 2024-05-29 06:48:44 is 34302287.68541338 s in the future
tar: ./usr/share/locale/cy/LC_MESSAGES: time stamp 2024-05-29 06:48:41 is 34302284.11053002 s in the future
tar: ./usr/share/bug/init-system-helpers: time stamp 2024-05-29 06:48:38 is 34302281.0453915 s in the future
tar: ./usr/share/bug/apt: time stamp 2024-05-29 06:48:31 is 34302274.04520368 s in the future
tar: ./usr/share/bash-completion/completions: time stamp 2024-05-29 06:48:46 is 34302289.0408926 s in the future
tar: ./usr/share/lintian/profiles/dpkg: time stamp 2024-05-29 06:48:35 is 34302278.04068302 s in the future
tar: ./usr/share/lintian: time stamp 2024-05-29 06:48:15 is 34302258.03827628 s in the future
tar: ./usr/share/doc/zlib1g: time stamp 2024-05-29 06:48:47 is 34302289.9685366 s in the future
tar: ./usr/share/doc/liblzma5: time stamp 2024-05-29 06:48:46 is 34302288.9668288 s in the future
tar: ./usr/share/doc/libxxhash0: time stamp 2024-05-29 06:48:46 is 34302288.9665865 s in the future
tar: ./usr/share/doc/util-linux-extra: time stamp 2024-05-29 06:48:46 is 34302288.96621112 s in the future
tar: ./usr/share/doc/util-linux/releases: time stamp 2024-05-29 06:48:46 is 34302288.95900144 s in the future
tar: ./usr/share/doc/util-linux/examples: time stamp 2024-05-29 06:48:46 is 34302288.95879118 s in the future
tar: ./usr/share/doc/util-linux: time stamp 2024-05-29 06:48:46 is 34302288.95874446 s in the future
tar: ./usr/share/doc/mount/examples: time stamp 2024-05-29 06:48:46 is 34302288.9581292 s in the future
tar: ./usr/share/doc/mount: time stamp 2024-05-29 06:48:46 is 34302288.95807642 s in the future
tar: ./usr/share/doc/libuuid1: time stamp 2024-05-29 06:48:46 is 34302288.9577592 s in the future
tar: ./usr/share/doc/libsmartcols1: time stamp 2024-05-29 06:48:46 is 34302288.95741834 s in the future
tar: ./usr/share/doc/libmount1: time stamp 2024-05-29 06:48:46 is 34302288.95700652 s in the future
tar: ./usr/share/doc/libblkid1: time stamp 2024-05-29 06:48:46 is 34302288.9566 s in the future
tar: ./usr/share/doc/bsdutils: time stamp 2024-05-29 06:48:45 is 34302287.95605476 s in the future
tar: ./usr/share/doc/usrmerge: time stamp 2024-05-29 06:48:45 is 34302287.95581904 s in the future
tar: ./usr/share/doc/tzdata: time stamp 2024-05-29 06:48:45 is 34302287.95489792 s in the future
tar: ./usr/share/doc/tar: time stamp 2024-05-29 06:48:45 is 34302287.95174244 s in the future
tar: ./usr/share/doc/sysvinit-utils: time stamp 2024-05-29 06:48:44 is 34302286.95149374 s in the future
tar: ./usr/share/doc/libudev1: time stamp 2024-05-29 06:48:44 is 34302286.9504982 s in the future
tar: ./usr/share/doc/libsystemd0: time stamp 2024-05-29 06:48:44 is 34302286.94990162 s in the future
tar: ./usr/share/doc/passwd/examples: time stamp 2024-05-29 06:48:44 is 34302286.94763456 s in the future
tar: ./usr/share/doc/passwd: time stamp 2024-05-29 06:48:44 is 34302286.94756934 s in the future
tar: ./usr/share/doc/login: time stamp 2024-05-29 06:48:44 is 34302286.9457719 s in the future
tar: ./usr/share/doc/sed/examples: time stamp 2024-05-29 06:48:44 is 34302286.94363584 s in the future
tar: ./usr/share/doc/sed: time stamp 2024-05-29 06:48:44 is 34302286.9435743 s in the future
tar: ./usr/share/doc/perl-modules-5.36: time stamp 2024-05-29 06:48:43 is 34302285.9424237 s in the future
tar: ./usr/share/doc/perl-base: time stamp 2024-05-29 06:48:42 is 34302284.94091296 s in the future
tar: ./usr/share/doc/perl: time stamp 2024-05-29 06:48:42 is 34302284.93932292 s in the future
tar: ./usr/share/doc/libperl5.36: time stamp 2024-05-29 06:48:42 is 34302284.9378339 s in the future
tar: ./usr/share/doc/libpcre2-8-0: time stamp 2024-05-29 06:48:41 is 34302283.9369863 s in the future
tar: ./usr/share/doc/libpam0g: time stamp 2024-05-29 06:48:41 is 34302283.93583868 s in the future
tar: ./usr/share/doc/libpam-runtime: time stamp 2024-05-29 06:48:41 is 34302283.9351485 s in the future
tar: ./usr/share/doc/libpam-modules-bin: time stamp 2024-05-29 06:48:40 is 34302282.93460334 s in the future
tar: ./usr/share/doc/libpam-modules/examples: time stamp 2024-05-29 06:48:40 is 34302282.93369094 s in the future
tar: ./usr/share/doc/libpam-modules: time stamp 2024-05-29 06:48:40 is 34302282.93363544 s in the future
tar: ./usr/share/doc/libp11-kit0/examples: time stamp 2024-05-29 06:48:40 is 34302282.93168638 s in the future
tar: ./usr/share/doc/libp11-kit0: time stamp 2024-05-29 06:48:40 is 34302282.93161748 s in the future
tar: ./usr/share/doc/libnettle8: time stamp 2024-05-29 06:48:40 is 34302282.92943144 s in the future
tar: ./usr/share/doc/libhogweed6: time stamp 2024-05-29 06:48:40 is 34302282.92721242 s in the future
tar: ./usr/share/doc/ncurses-bin: time stamp 2024-05-29 06:48:40 is 34302282.9244879 s in the future
tar: ./usr/share/doc/ncurses-base: time stamp 2024-05-29 06:48:40 is 34302282.92139952 s in the future
tar: ./usr/share/doc/libtinfo6: time stamp 2024-05-29 06:48:40 is 34302282.9184523 s in the future
tar: ./usr/share/doc/mawk/examples: time stamp 2024-05-29 06:48:39 is 34302281.91721178 s in the future
tar: ./usr/share/doc/mawk: time stamp 2024-05-29 06:48:39 is 34302281.9171616 s in the future
tar: ./usr/share/doc/liblz4-1: time stamp 2024-05-29 06:48:39 is 34302281.91691184 s in the future
tar: ./usr/share/doc/libzstd1: time stamp 2024-05-29 06:48:39 is 34302281.91643666 s in the future
tar: ./usr/share/doc/libcrypt1: time stamp 2024-05-29 06:48:39 is 34302281.9161589 s in the future
tar: ./usr/share/doc/libunistring2: time stamp 2024-05-29 06:48:39 is 34302281.91585578 s in the future
tar: ./usr/share/doc/libtext-glob-perl: time stamp 2024-05-29 06:48:39 is 34302281.9156539 s in the future
tar: ./usr/share/doc/libtasn1-6: time stamp 2024-05-29 06:48:39 is 34302281.9152549 s in the future
tar: ./usr/share/doc/libsepol2: time stamp 2024-05-29 06:48:39 is 34302281.91507896 s in the future
tar: ./usr/share/doc/libsemanage2: time stamp 2024-05-29 06:48:39 is 34302281.9148303 s in the future
tar: ./usr/share/doc/libsemanage-common: time stamp 2024-05-29 06:48:39 is 34302281.91465656 s in the future
tar: ./usr/share/doc/libselinux1: time stamp 2024-05-29 06:48:39 is 34302281.91446708 s in the future
tar: ./usr/share/doc/libseccomp2: time stamp 2024-05-29 06:48:39 is 34302281.91421454 s in the future
tar: ./usr/share/doc/libnumber-compare-perl: time stamp 2024-05-29 06:48:39 is 34302281.91401692 s in the future
tar: ./usr/share/doc/libmd0: time stamp 2024-05-29 06:48:39 is 34302281.91380854 s in the future
tar: ./usr/share/doc/libidn2-0: time stamp 2024-05-29 06:48:38 is 34302280.9132953 s in the future
tar: ./usr/share/doc/libgpg-error0: time stamp 2024-05-29 06:48:38 is 34302280.91302156 s in the future
tar: ./usr/share/doc/libgcrypt20: time stamp 2024-05-29 06:48:38 is 34302280.90955466 s in the future
tar: ./usr/share/doc/libfile-find-rule-perl: time stamp 2024-05-29 06:48:38 is 34302280.90934602 s in the future
tar: ./usr/share/doc/libffi8: time stamp 2024-05-29 06:48:38 is 34302280.90918512 s in the future
tar: ./usr/share/doc/libcap2: time stamp 2024-05-29 06:48:38 is 34302280.90899358 s in the future
tar: ./usr/share/doc/libcap-ng0: time stamp 2024-05-29 06:48:38 is 34302280.90872712 s in the future
tar: ./usr/share/doc/init-system-helpers: time stamp 2024-05-29 06:48:38 is 34302280.90846296 s in the future
tar: ./usr/share/doc/hostname: time stamp 2024-05-29 06:48:38 is 34302280.90827324 s in the future
tar: ./usr/share/doc/gzip: time stamp 2024-05-29 06:48:38 is 34302280.907453 s in the future
tar: ./usr/share/doc/grep: time stamp 2024-05-29 06:48:38 is 34302280.90491722 s in the future
tar: ./usr/share/doc/libgnutls30: time stamp 2024-05-29 06:48:38 is 34302280.89833954 s in the future
tar: ./usr/share/doc/gpgv: time stamp 2024-05-29 06:48:37 is 34302279.89341252 s in the future
tar: ./usr/share/doc/libgmp10: time stamp 2024-05-29 06:48:37 is 34302279.88944322 s in the future
tar: ./usr/share/doc/libc6: time stamp 2024-05-29 06:48:37 is 34302279.88694418 s in the future
tar: ./usr/share/doc/libc-bin: time stamp 2024-05-29 06:48:36 is 34302278.88639578 s in the future
tar: ./usr/share/doc/libgdbm6: time stamp 2024-05-29 06:48:36 is 34302278.88546482 s in the future
tar: ./usr/share/doc/libgdbm-compat4: time stamp 2024-05-29 06:48:36 is 34302278.88496432 s in the future
tar: ./usr/share/doc/findutils: time stamp 2024-05-29 06:48:35 is 34302277.86789086 s in the future
tar: ./usr/share/doc/logsave: time stamp 2024-05-29 06:48:35 is 34302277.86763682 s in the future
tar: ./usr/share/doc/libss2: time stamp 2024-05-29 06:48:35 is 34302277.86744524 s in the future
tar: ./usr/share/doc/libext2fs2: time stamp 2024-05-29 06:48:35 is 34302277.86723022 s in the future
tar: ./usr/share/doc/libcom-err2: time stamp 2024-05-29 06:48:35 is 34302277.86701806 s in the future
tar: ./usr/share/doc/e2fsprogs: time stamp 2024-05-29 06:48:35 is 34302277.86534422 s in the future
tar: ./usr/share/doc/diffutils: time stamp 2024-05-29 06:48:34 is 34302276.86053938 s in the future
tar: ./usr/share/doc/debianutils: time stamp 2024-05-29 06:48:34 is 34302276.86006498 s in the future
tar: ./usr/share/doc/debian-archive-keyring: time stamp 2024-05-29 06:48:34 is 34302276.8598738 s in the future
tar: ./usr/share/doc/debconf: time stamp 2024-05-29 06:48:34 is 34302276.85965924 s in the future
tar: ./usr/share/doc/libdb5.3: time stamp 2024-05-29 06:48:34 is 34302276.85941376 s in the future
tar: ./usr/share/doc/dash: time stamp 2024-05-29 06:48:34 is 34302276.85906786 s in the future
tar: ./usr/share/doc/coreutils: time stamp 2024-05-29 06:48:34 is 34302276.85596446 s in the future
tar: ./usr/share/doc/libbz2-1.0: time stamp 2024-05-29 06:48:33 is 34302275.8554502 s in the future
tar: ./usr/share/doc/bash: time stamp 2024-05-29 06:48:33 is 34302275.85123 s in the future
tar: ./usr/share/doc/base-passwd: time stamp 2024-05-29 06:48:32 is 34302274.85018474 s in the future
tar: ./usr/share/doc/base-files: time stamp 2024-05-29 06:48:32 is 34302274.84979252 s in the future
tar: ./usr/share/doc/libaudit1: time stamp 2024-05-29 06:48:32 is 34302274.84958624 s in the future
tar: ./usr/share/doc/libaudit-common: time stamp 2024-05-29 06:48:32 is 34302274.8493955 s in the future
tar: ./usr/share/doc/libattr1: time stamp 2024-05-29 06:48:32 is 34302274.84917528 s in the future
tar: ./usr/share/doc/libapt-pkg6.0: time stamp 2024-05-29 06:48:32 is 34302274.84890718 s in the future
tar: ./usr/share/doc/apt/examples: time stamp 2024-05-29 06:48:31 is 34302273.84795328 s in the future
tar: ./usr/share/doc/apt: time stamp 2024-05-29 06:48:31 is 34302273.84790172 s in the future
tar: ./usr/share/doc/libacl1: time stamp 2024-05-29 06:48:31 is 34302273.84770732 s in the future
tar: ./usr/lib/terminfo/x: time stamp 2024-05-29 06:48:40 is 34302281.40624676 s in the future
tar: ./usr/lib/terminfo/w: time stamp 2024-05-29 06:48:40 is 34302281.40602728 s in the future
tar: ./usr/lib/terminfo/v: time stamp 2024-05-29 06:48:40 is 34302281.40581864 s in the future
tar: ./usr/lib/terminfo/t: time stamp 2024-05-29 06:48:40 is 34302281.40566758 s in the future
tar: ./usr/lib/terminfo/s: time stamp 2024-05-29 06:48:40 is 34302281.40533162 s in the future
tar: ./usr/lib/terminfo/r: time stamp 2024-05-29 06:48:40 is 34302281.40505972 s in the future
tar: ./usr/lib/terminfo/p: time stamp 2024-05-29 06:48:40 is 34302281.40494992 s in the future
tar: ./usr/lib/terminfo/m: time stamp 2024-05-29 06:48:40 is 34302281.40470466 s in the future
tar: ./usr/lib/terminfo/l: time stamp 2024-05-29 06:48:40 is 34302281.40460364 s in the future
tar: ./usr/lib/terminfo/h: time stamp 2024-05-29 06:48:40 is 34302281.4044995 s in the future
tar: ./usr/lib/terminfo/d: time stamp 2024-05-29 06:48:40 is 34302281.40440408 s in the future
tar: ./usr/lib/terminfo/c: time stamp 2024-05-29 06:48:40 is 34302281.40422072 s in the future
tar: ./usr/lib/terminfo/a: time stamp 2024-05-29 06:48:40 is 34302281.4041036 s in the future
tar: ./usr/lib/terminfo/E: time stamp 2024-05-29 06:48:40 is 34302281.40396226 s in the future
tar: ./usr/lib/init: time stamp 2024-05-29 06:48:44 is 34302285.403794 s in the future
tar: ./usr/lib/lsb/init-functions.d: time stamp 2024-05-29 06:48:44 is 34302285.40362246 s in the future
tar: ./usr/lib/lsb: time stamp 2024-05-29 06:48:44 is 34302285.40358678 s in the future
tar: ./usr/lib/udev/rules.d: time stamp 2024-05-29 06:48:55 is 34302296.40337954 s in the future
tar: ./usr/lib/udev: time stamp 2024-05-29 06:48:46 is 34302287.4033435 s in the future
tar: ./usr/lib/usrmerge: time stamp 2024-05-29 06:48:45 is 34302286.4031618 s in the future
tar: ./usr/lib/mime/packages: time stamp 2024-05-29 06:48:46 is 34302287.40301224 s in the future
tar: ./usr/lib/tmpfiles.d: time stamp 2024-05-29 06:48:44 is 34302285.40289702 s in the future
tar: ./usr/lib/systemd/system: time stamp 2024-05-29 06:48:55 is 34302296.4023615 s in the future
tar: ./usr/lib/locale/C.utf8/LC_MESSAGES: time stamp 2024-05-29 06:48:36 is 34302274.61517794 s in the future
tar: ./usr/lib/locale/C.utf8: time stamp 2024-05-29 06:48:36 is 34302274.6150949 s in the future
tar: ./usr/lib/dpkg/methods/apt: time stamp 2024-05-29 06:48:31 is 34302269.6147439 s in the future
tar: ./usr/lib/apt/solvers: time stamp 2024-05-29 06:48:31 is 34302269.61329862 s in the future
tar: ./usr/lib/apt/methods: time stamp 2024-05-29 06:48:31 is 34302269.59846442 s in the future
tar: ./usr/lib/aarch64-linux-gnu/security: time stamp 2024-05-29 06:48:40 is 34302277.75748132 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/warnings: time stamp 2024-05-29 06:48:42 is 34302279.33294698 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/XIDS: time stamp 2024-05-29 06:48:42 is 34302279.33270168 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/XIDC: time stamp 2024-05-29 06:48:42 is 34302279.33251812 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/WB: time stamp 2024-05-29 06:48:42 is 34302279.3317074 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Vo: time stamp 2024-05-29 06:48:42 is 34302279.3313952 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/VS: time stamp 2024-05-29 06:48:42 is 34302279.33125194 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Upper: time stamp 2024-05-29 06:48:42 is 34302279.33109026 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/UIdeo: time stamp 2024-05-29 06:48:42 is 34302279.33093888 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Term: time stamp 2024-05-29 06:48:42 is 34302279.33080426 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Scx: time stamp 2024-05-29 06:48:42 is 34302279.32690564 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Sc: time stamp 2024-05-29 06:48:42 is 34302279.32502102 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/STerm: time stamp 2024-05-29 06:48:42 is 34302279.32486888 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/SD: time stamp 2024-05-29 06:48:42 is 34302279.32472086 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/SB: time stamp 2024-05-29 06:48:42 is 34302279.32388566 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/QMark: time stamp 2024-05-29 06:48:42 is 34302279.3237058 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Perl: time stamp 2024-05-29 06:48:42 is 34302279.32222326 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/PatSyn: time stamp 2024-05-29 06:48:42 is 34302279.32206442 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/PCM: time stamp 2024-05-29 06:48:42 is 34302279.32189686 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Nv: time stamp 2024-05-29 06:48:42 is 34302279.31841176 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Nt: time stamp 2024-05-29 06:48:42 is 34302279.31815282 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/NFKDQC: time stamp 2024-05-29 06:48:42 is 34302279.3179112 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/NFKCQC: time stamp 2024-05-29 06:48:42 is 34302279.31772748 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/NFDQC: time stamp 2024-05-29 06:48:42 is 34302279.3175357 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/NFCQC: time stamp 2024-05-29 06:48:42 is 34302279.31734014 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Math: time stamp 2024-05-29 06:48:42 is 34302279.31721856 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Lower: time stamp 2024-05-29 06:48:42 is 34302279.31706424 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Lb: time stamp 2024-05-29 06:48:42 is 34302279.31586824 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Jt: time stamp 2024-05-29 06:48:42 is 34302279.31538838 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Jg: time stamp 2024-05-29 06:48:42 is 34302279.31422478 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/InSC: time stamp 2024-05-29 06:48:42 is 34302279.31298182 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/InPC: time stamp 2024-05-29 06:48:42 is 34302279.31219036 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/In: time stamp 2024-05-29 06:48:42 is 34302279.31048184 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Ideo: time stamp 2024-05-29 06:48:42 is 34302279.31029482 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/IdType: time stamp 2024-05-29 06:48:42 is 34302279.30955842 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/IdStatus: time stamp 2024-05-29 06:48:42 is 34302279.30931404 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/IDS: time stamp 2024-05-29 06:48:42 is 34302279.30916792 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/IDC: time stamp 2024-05-29 06:48:42 is 34302279.3090316 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Hyphen: time stamp 2024-05-29 06:48:42 is 34302279.30887832 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Hst: time stamp 2024-05-29 06:48:42 is 34302279.3087386 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Hex: time stamp 2024-05-29 06:48:42 is 34302279.30860878 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/GrExt: time stamp 2024-05-29 06:48:42 is 34302279.30845704 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/GrBase: time stamp 2024-05-29 06:48:42 is 34302279.30826414 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Gc: time stamp 2024-05-29 06:48:42 is 34302279.30625686 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/GCB: time stamp 2024-05-29 06:48:42 is 34302279.30570646 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/ExtPict: time stamp 2024-05-29 06:48:42 is 34302279.305548 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Ext: time stamp 2024-05-29 06:48:42 is 34302279.30540472 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Emoji: time stamp 2024-05-29 06:48:42 is 34302279.3052659 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Ea: time stamp 2024-05-29 06:48:42 is 34302279.30487178 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/EPres: time stamp 2024-05-29 06:48:42 is 34302279.30472644 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/EComp: time stamp 2024-05-29 06:48:42 is 34302279.30459606 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/EBase: time stamp 2024-05-29 06:48:42 is 34302279.30446382 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Dt: time stamp 2024-05-29 06:48:42 is 34302279.30356374 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Dia: time stamp 2024-05-29 06:48:42 is 34302279.30341288 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Dep: time stamp 2024-05-29 06:48:42 is 34302279.30325976 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Dash: time stamp 2024-05-29 06:48:42 is 34302279.30310468 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/DI: time stamp 2024-05-29 06:48:42 is 34302279.30297128 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/CompEx: time stamp 2024-05-29 06:48:42 is 34302279.30283974 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Ccc: time stamp 2024-05-29 06:48:42 is 34302279.30218584 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Cased: time stamp 2024-05-29 06:48:42 is 34302279.30202056 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/CWU: time stamp 2024-05-29 06:48:42 is 34302279.301863 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/CWT: time stamp 2024-05-29 06:48:42 is 34302279.30170494 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/CWL: time stamp 2024-05-29 06:48:42 is 34302279.30154036 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/CWKCF: time stamp 2024-05-29 06:48:42 is 34302279.30137094 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/CWCM: time stamp 2024-05-29 06:48:42 is 34302279.30123208 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/CWCF: time stamp 2024-05-29 06:48:42 is 34302279.30107218 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/CI: time stamp 2024-05-29 06:48:42 is 34302279.30090976 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/CE: time stamp 2024-05-29 06:48:42 is 34302279.30077424 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Bpt: time stamp 2024-05-29 06:48:42 is 34302279.30050418 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Blk: time stamp 2024-05-29 06:48:42 is 34302279.30035668 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/BidiM: time stamp 2024-05-29 06:48:42 is 34302279.30018698 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/BidiC: time stamp 2024-05-29 06:48:42 is 34302279.30004308 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Bc: time stamp 2024-05-29 06:48:42 is 34302279.29921966 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Alpha: time stamp 2024-05-29 06:48:42 is 34302279.29907638 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/lib/Age: time stamp 2024-05-29 06:48:42 is 34302279.29786994 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/unicore/To: time stamp 2024-05-29 06:48:42 is 34302279.28770296 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/auto/re: time stamp 2024-05-29 06:48:42 is 34302279.2781863 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/auto/attributes: time stamp 2024-05-29 06:48:42 is 34302279.27767164 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/auto/Socket: time stamp 2024-05-29 06:48:42 is 34302279.27697138 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/auto/POSIX: time stamp 2024-05-29 06:48:42 is 34302279.27537718 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/auto/List/Util: time stamp 2024-05-29 06:48:42 is 34302279.2745042 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/auto/IO: time stamp 2024-05-29 06:48:42 is 34302279.27361452 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/auto/Hash/Util: time stamp 2024-05-29 06:48:42 is 34302279.27295436 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/auto/File/Glob: time stamp 2024-05-29 06:48:42 is 34302279.27236946 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/auto/Fcntl: time stamp 2024-05-29 06:48:42 is 34302279.27179238 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/auto/Cwd: time stamp 2024-05-29 06:48:42 is 34302279.27122618 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/Tie: time stamp 2024-05-29 06:48:42 is 34302279.27107014 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/Text: time stamp 2024-05-29 06:48:42 is 34302279.27088434 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/Scalar: time stamp 2024-05-29 06:48:42 is 34302279.27076104 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/List: time stamp 2024-05-29 06:48:42 is 34302279.27066214 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/IPC: time stamp 2024-05-29 06:48:42 is 34302279.27050364 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/IO/Socket: time stamp 2024-05-29 06:48:42 is 34302279.26993972 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/IO: time stamp 2024-05-29 06:48:42 is 34302279.26989056 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/Hash: time stamp 2024-05-29 06:48:42 is 34302279.26977286 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/Getopt: time stamp 2024-05-29 06:48:42 is 34302279.269398 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/File/Spec: time stamp 2024-05-29 06:48:42 is 34302279.26770768 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/File: time stamp 2024-05-29 06:48:42 is 34302279.26765588 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/Exporter: time stamp 2024-05-29 06:48:42 is 34302279.26753136 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base/Carp: time stamp 2024-05-29 06:48:42 is 34302279.26743018 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl-base: time stamp 2024-05-29 06:48:42 is 34302279.26739506 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/debian-config-data-5.36.0: time stamp 2024-05-29 06:48:42 is 34302279.26704996 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/threads: time stamp 2024-05-29 06:48:42 is 34302279.25559162 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/sys: time stamp 2024-05-29 06:48:42 is 34302279.25490584 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/linux: time stamp 2024-05-29 06:48:42 is 34302279.25461536 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/gnu: time stamp 2024-05-29 06:48:42 is 34302279.2544625 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/bits/types: time stamp 2024-05-29 06:48:42 is 34302279.2509236 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/bits: time stamp 2024-05-29 06:48:42 is 34302279.25082712 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/threads/shared: time stamp 2024-05-29 06:48:42 is 34302279.24973252 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/threads: time stamp 2024-05-29 06:48:42 is 34302279.24967794 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/re: time stamp 2024-05-29 06:48:42 is 34302279.24006086 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/mro: time stamp 2024-05-29 06:48:42 is 34302279.23961824 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/attributes: time stamp 2024-05-29 06:48:42 is 34302279.23902356 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Unicode/Normalize: time stamp 2024-05-29 06:48:42 is 34302279.23334992 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Unicode/Collate: time stamp 2024-05-29 06:48:42 is 34302279.21669096 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Time/Piece: time stamp 2024-05-29 06:48:42 is 34302279.21612652 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Time/HiRes: time stamp 2024-05-29 06:48:42 is 34302279.2155463 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Sys/Syslog: time stamp 2024-05-29 06:48:42 is 34302279.21506286 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Sys/Hostname: time stamp 2024-05-29 06:48:42 is 34302279.21460906 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Storable: time stamp 2024-05-29 06:48:42 is 34302279.21249654 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Socket: time stamp 2024-05-29 06:48:42 is 34302279.21176728 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/SDBM_File: time stamp 2024-05-29 06:48:42 is 34302279.21117572 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/PerlIO/via: time stamp 2024-05-29 06:48:42 is 34302279.21065138 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/PerlIO/scalar: time stamp 2024-05-29 06:48:42 is 34302279.21012778 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/PerlIO/mmap: time stamp 2024-05-29 06:48:42 is 34302279.20958978 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/PerlIO/encoding: time stamp 2024-05-29 06:48:42 is 34302279.20904616 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/POSIX: time stamp 2024-05-29 06:48:42 is 34302279.20745194 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Opcode: time stamp 2024-05-29 06:48:42 is 34302279.20657402 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/ODBM_File: time stamp 2024-05-29 06:48:42 is 34302279.20602032 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/NDBM_File: time stamp 2024-05-29 06:48:42 is 34302279.20550182 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Math/BigInt/FastCalc: time stamp 2024-05-29 06:48:42 is 34302279.20494802 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/MIME/Base64: time stamp 2024-05-29 06:48:42 is 34302279.20440352 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/List/Util: time stamp 2024-05-29 06:48:42 is 34302279.20346098 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/IPC/SysV: time stamp 2024-05-29 06:48:42 is 34302279.20286332 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/IO: time stamp 2024-05-29 06:48:42 is 34302279.20200632 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/I18N/Langinfo: time stamp 2024-05-29 06:48:42 is 34302279.2017077 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Hash/Util/FieldHash: time stamp 2024-05-29 06:48:42 is 34302279.2000857 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Hash/Util: time stamp 2024-05-29 06:48:42 is 34302279.2000215 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/GDBM_File: time stamp 2024-05-29 06:48:42 is 34302279.19939802 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Filter/Util/Call: time stamp 2024-05-29 06:48:42 is 34302279.19875084 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/File/Glob: time stamp 2024-05-29 06:48:42 is 34302279.1976359 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/File/DosGlob: time stamp 2024-05-29 06:48:42 is 34302279.19738348 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Fcntl: time stamp 2024-05-29 06:48:42 is 34302279.19616024 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Encode/Unicode: time stamp 2024-05-29 06:48:42 is 34302279.19502512 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Encode/TW: time stamp 2024-05-29 06:48:42 is 34302279.17070756 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Encode/Symbol: time stamp 2024-05-29 06:48:42 is 34302279.17010604 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Encode/KR: time stamp 2024-05-29 06:48:42 is 34302279.14287174 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Encode/JP: time stamp 2024-05-29 06:48:42 is 34302279.11241972 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Encode/EBCDIC: time stamp 2024-05-29 06:48:42 is 34302279.11181446 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Encode/CN: time stamp 2024-05-29 06:48:42 is 34302279.08732804 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Encode/Byte: time stamp 2024-05-29 06:48:42 is 34302279.08372046 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Encode: time stamp 2024-05-29 06:48:42 is 34302279.0836336 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Digest/SHA: time stamp 2024-05-29 06:48:42 is 34302279.0825848 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Digest/MD5: time stamp 2024-05-29 06:48:42 is 34302279.08194984 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Devel/Peek: time stamp 2024-05-29 06:48:42 is 34302279.08126966 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Data/Dumper: time stamp 2024-05-29 06:48:42 is 34302279.080475 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/DB_File: time stamp 2024-05-29 06:48:42 is 34302279.07947358 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Cwd: time stamp 2024-05-29 06:48:42 is 34302279.07897576 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Compress/Raw/Zlib: time stamp 2024-05-29 06:48:42 is 34302279.0781729 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Compress/Raw/Bzip2: time stamp 2024-05-29 06:48:42 is 34302279.07754166 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/B: time stamp 2024-05-29 06:48:42 is 34302279.0760589 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/asm-generic: time stamp 2024-05-29 06:48:42 is 34302279.07512466 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/asm: time stamp 2024-05-29 06:48:42 is 34302279.07445026 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Unicode/Collate: time stamp 2024-05-29 06:48:42 is 34302279.07350076 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Unicode: time stamp 2024-05-29 06:48:42 is 34302279.07343908 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Time: time stamp 2024-05-29 06:48:42 is 34302279.07274182 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Sys: time stamp 2024-05-29 06:48:42 is 34302279.07226416 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Sub: time stamp 2024-05-29 06:48:42 is 34302279.07212204 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Scalar: time stamp 2024-05-29 06:48:42 is 34302279.07198138 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/PerlIO: time stamp 2024-05-29 06:48:42 is 34302279.07175742 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Math/BigInt: time stamp 2024-05-29 06:48:42 is 34302279.07164086 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/MIME: time stamp 2024-05-29 06:48:42 is 34302279.0714714 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/List/Util: time stamp 2024-05-29 06:48:42 is 34302279.07120838 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/List: time stamp 2024-05-29 06:48:42 is 34302279.07115488 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/IPC: time stamp 2024-05-29 06:48:42 is 34302279.07086014 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/IO/Socket: time stamp 2024-05-29 06:48:42 is 34302279.06976986 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/IO: time stamp 2024-05-29 06:48:42 is 34302279.0697089 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/I18N: time stamp 2024-05-29 06:48:42 is 34302279.06957226 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Hash/Util: time stamp 2024-05-29 06:48:42 is 34302279.06896674 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Hash: time stamp 2024-05-29 06:48:42 is 34302279.06891658 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Filter/Util: time stamp 2024-05-29 06:48:42 is 34302279.06875476 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/File/Spec: time stamp 2024-05-29 06:48:42 is 34302279.06723908 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/File: time stamp 2024-05-29 06:48:42 is 34302279.06716978 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Encode/Unicode: time stamp 2024-05-29 06:48:42 is 34302279.06627616 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Encode/MIME/Header: time stamp 2024-05-29 06:48:42 is 34302279.065991 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Encode/MIME: time stamp 2024-05-29 06:48:42 is 34302279.06594276 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Encode/KR: time stamp 2024-05-29 06:48:42 is 34302279.06582368 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Encode/JP: time stamp 2024-05-29 06:48:42 is 34302279.06566298 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Encode/CN: time stamp 2024-05-29 06:48:42 is 34302279.06554218 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Encode: time stamp 2024-05-29 06:48:42 is 34302279.0655034 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Digest: time stamp 2024-05-29 06:48:42 is 34302279.06530008 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Devel: time stamp 2024-05-29 06:48:42 is 34302279.0586057 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Data: time stamp 2024-05-29 06:48:42 is 34302279.05795488 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Compress/Raw: time stamp 2024-05-29 06:48:42 is 34302279.05724612 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/CORE: time stamp 2024-05-29 06:48:42 is 34302278.98898408 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/B: time stamp 2024-05-29 06:48:42 is 34302278.98757546 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0: time stamp 2024-05-29 06:48:42 is 34302278.98752058 s in the future
tar: ./usr/lib/aarch64-linux-gnu/gconv/gconv-modules.d: time stamp 2024-05-29 06:48:37 is 34302273.7958735 s in the future
tar: ./usr/lib/aarch64-linux-gnu/gconv: time stamp 2024-05-29 06:48:37 is 34302273.79578946 s in the future
tar: ./usr/lib/aarch64-linux-gnu/e2fsprogs: time stamp 2024-05-29 06:48:35 is 34302271.79564598 s in the future
tar: ./var/mail: time stamp 2024-05-29 06:48:26 is 34302262.79538014 s in the future
tar: ./var/opt: time stamp 2024-05-29 06:48:26 is 34302262.79531126 s in the future
tar: ./var/log/faillog: time stamp 2024-05-29 06:48:54 is 34302290.79481806 s in the future
tar: ./var/log/lastlog: time stamp 2024-05-29 06:48:26 is 34302262.79463348 s in the future
tar: ./var/log/btmp: time stamp 2024-05-29 06:48:26 is 34302262.79456988 s in the future
tar: ./var/log/wtmp: time stamp 2024-05-29 06:48:26 is 34302262.79452254 s in the future
tar: ./var/cache/debconf/passwords.dat: time stamp 2024-05-29 06:48:26 is 34302262.79348258 s in the future
tar: ./var/cache/debconf/config.dat: time stamp 2024-05-29 06:50:35 is 34302391.79334968 s in the future
tar: ./var/cache/debconf/templates.dat: time stamp 2024-05-29 06:50:35 is 34302391.77714938 s in the future
tar: ./var/cache/debconf: time stamp 2024-05-29 06:50:35 is 34302391.7770449 s in the future
tar: ./var/lib/shells.state: time stamp 2024-05-29 06:48:49 is 34302285.77679144 s in the future
tar: ./var/lib/pam/session-noninteractive: time stamp 2024-05-29 06:48:54 is 34302290.77670586 s in the future
tar: ./var/lib/pam/session: time stamp 2024-05-29 06:48:54 is 34302290.77663522 s in the future
tar: ./var/lib/pam/password: time stamp 2024-05-29 06:48:54 is 34302290.77656892 s in the future
tar: ./var/lib/pam/account: time stamp 2024-05-29 06:48:54 is 34302290.77651036 s in the future
tar: ./var/lib/pam/auth: time stamp 2024-05-29 06:48:54 is 34302290.77645624 s in the future
tar: ./var/lib/pam/seen: time stamp 2024-05-29 06:48:54 is 34302290.77638628 s in the future
tar: ./var/lib/pam: time stamp 2024-05-29 06:48:54 is 34302290.776314 s in the future
tar: ./var/lib/systemd/deb-systemd-helper-enabled/dpkg-db-backup.timer.dsh-also: time stamp 2024-05-29 06:48:54 is 34302290.77621 s in the future
tar: ./var/lib/systemd/deb-systemd-helper-enabled/fstrim.timer.dsh-also: time stamp 2024-05-29 06:48:53 is 34302289.77613876 s in the future
tar: ./var/lib/systemd/deb-systemd-helper-enabled/apt-daily.timer.dsh-also: time stamp 2024-05-29 06:48:52 is 34302288.77608316 s in the future
tar: ./var/lib/systemd/deb-systemd-helper-enabled/apt-daily-upgrade.timer.dsh-also: time stamp 2024-05-29 06:48:52 is 34302288.77603172 s in the future
tar: ./var/lib/systemd/deb-systemd-helper-enabled/multi-user.target.wants/e2scrub_reap.service: time stamp 2024-05-29 06:48:51 is 34302287.77596994 s in the future
tar: ./var/lib/systemd/deb-systemd-helper-enabled/multi-user.target.wants: time stamp 2024-05-29 06:48:51 is 34302287.77593604 s in the future
tar: ./var/lib/systemd/deb-systemd-helper-enabled/e2scrub_reap.service.dsh-also: time stamp 2024-05-29 06:48:51 is 34302287.77588846 s in the future
tar: ./var/lib/systemd/deb-systemd-helper-enabled/e2scrub_all.timer.dsh-also: time stamp 2024-05-29 06:48:50 is 34302286.77584056 s in the future
tar: ./var/lib/systemd/deb-systemd-helper-enabled/timers.target.wants/fstrim.timer: time stamp 2024-05-29 06:48:53 is 34302289.77578252 s in the future
tar: ./var/lib/systemd/deb-systemd-helper-enabled/timers.target.wants/apt-daily.timer: time stamp 2024-05-29 06:48:52 is 34302288.77570992 s in the future
tar: ./var/lib/systemd/deb-systemd-helper-enabled/timers.target.wants/apt-daily-upgrade.timer: time stamp 2024-05-29 06:48:52 is 34302288.77565294 s in the future
tar: ./var/lib/systemd/deb-systemd-helper-enabled/timers.target.wants/e2scrub_all.timer: time stamp 2024-05-29 06:48:50 is 34302286.77560588 s in the future
tar: ./var/lib/systemd/deb-systemd-helper-enabled/timers.target.wants/dpkg-db-backup.timer: time stamp 2024-05-29 06:48:28 is 34302264.77556292 s in the future
tar: ./var/lib/systemd/deb-systemd-helper-enabled/timers.target.wants: time stamp 2024-05-29 06:48:53 is 34302289.7755305 s in the future
tar: ./var/lib/systemd/deb-systemd-helper-enabled: time stamp 2024-05-29 06:48:54 is 34302290.77550122 s in the future
tar: ./var/lib/systemd: time stamp 2024-05-29 06:48:28 is 34302264.77547482 s in the future
tar: ./var/lib/dpkg/diversions: time stamp 2024-05-29 06:48:54 is 34302290.7728582 s in the future
tar: ./var/lib/dpkg/diversions-old: time stamp 2024-05-29 06:48:54 is 34302290.77276628 s in the future
tar: ./var/lib/dpkg/cmethopt: time stamp 2024-05-29 06:48:47 is 34302283.7727061 s in the future
tar: ./var/lib/dpkg/triggers/ldconfig: time stamp 2024-05-29 06:48:36 is 34302272.77263146 s in the future
tar: ./var/lib/dpkg/triggers/File: time stamp 2024-05-29 06:48:34 is 34302270.77256338 s in the future
tar: ./var/lib/dpkg/triggers/Unincorp: time stamp 2024-05-29 06:48:25 is 34302261.77250632 s in the future
tar: ./var/lib/dpkg/triggers: time stamp 2024-05-29 06:48:36 is 34302272.77243918 s in the future
tar: ./var/lib/dpkg/available: time stamp 2024-05-29 06:48:57 is 34302293.77131402 s in the future
tar: ./var/lib/dpkg/info/zlib1g:arm64.list: time stamp 2024-05-29 06:48:47 is 34302283.74995452 s in the future
tar: ./var/lib/dpkg/info/liblzma5:arm64.list: time stamp 2024-05-29 06:48:46 is 34302282.74969448 s in the future
tar: ./var/lib/dpkg/info/libxxhash0:arm64.list: time stamp 2024-05-29 06:48:46 is 34302282.74945666 s in the future
tar: ./var/lib/dpkg/info/util-linux-extra.list: time stamp 2024-05-29 06:48:46 is 34302282.74914544 s in the future
tar: ./var/lib/dpkg/info/util-linux.list: time stamp 2024-05-29 06:48:46 is 34302282.748791 s in the future
tar: ./var/lib/dpkg/info/mount.list: time stamp 2024-05-29 06:48:46 is 34302282.74865136 s in the future
tar: ./var/lib/dpkg/info/libuuid1:arm64.list: time stamp 2024-05-29 06:48:46 is 34302282.74838918 s in the future
tar: ./var/lib/dpkg/info/libsmartcols1:arm64.list: time stamp 2024-05-29 06:48:46 is 34302282.74804968 s in the future
tar: ./var/lib/dpkg/info/libmount1:arm64.list: time stamp 2024-05-29 06:48:46 is 34302282.7477515 s in the future
tar: ./var/lib/dpkg/info/libblkid1:arm64.list: time stamp 2024-05-29 06:48:46 is 34302282.74746538 s in the future
tar: ./var/lib/dpkg/info/bsdutils.list: time stamp 2024-05-29 06:48:45 is 34302281.74525666 s in the future
tar: ./var/lib/dpkg/info/usrmerge.list: time stamp 2024-05-29 06:48:45 is 34302281.74496348 s in the future
tar: ./var/lib/dpkg/info/tzdata.list: time stamp 2024-05-29 06:48:45 is 34302281.74154506 s in the future
tar: ./var/lib/dpkg/info/tar.list: time stamp 2024-05-29 06:48:45 is 34302281.7412912 s in the future
tar: ./var/lib/dpkg/info/sysvinit-utils.list: time stamp 2024-05-29 06:48:44 is 34302280.74115932 s in the future
tar: ./var/lib/dpkg/info/libudev1:arm64.list: time stamp 2024-05-29 06:48:44 is 34302280.7409277 s in the future
tar: ./var/lib/dpkg/info/libsystemd0:arm64.list: time stamp 2024-05-29 06:48:44 is 34302280.74065782 s in the future
tar: ./var/lib/dpkg/info/passwd.list: time stamp 2024-05-29 06:48:44 is 34302280.7402612 s in the future
tar: ./var/lib/dpkg/info/login.list: time stamp 2024-05-29 06:48:44 is 34302280.73992368 s in the future
tar: ./var/lib/dpkg/info/sed.list: time stamp 2024-05-29 06:48:44 is 34302280.7397847 s in the future
tar: ./var/lib/dpkg/info/perl-modules-5.36.list: time stamp 2024-05-29 06:48:43 is 34302279.73844408 s in the future
tar: ./var/lib/dpkg/info/perl-base.list: time stamp 2024-05-29 06:48:42 is 34302278.73753948 s in the future
tar: ./var/lib/dpkg/info/perl.list: time stamp 2024-05-29 06:48:42 is 34302278.7372209 s in the future
tar: ./var/lib/dpkg/info/libperl5.36:arm64.list: time stamp 2024-05-29 06:48:42 is 34302278.73590604 s in the future
tar: ./var/lib/dpkg/info/libpcre2-8-0:arm64.list: time stamp 2024-05-29 06:48:41 is 34302277.73566644 s in the future
tar: ./var/lib/dpkg/info/libpam0g:arm64.list: time stamp 2024-05-29 06:48:41 is 34302277.73524544 s in the future
tar: ./var/lib/dpkg/info/libpam-runtime.list: time stamp 2024-05-29 06:48:41 is 34302277.73466074 s in the future
tar: ./var/lib/dpkg/info/libpam-modules-bin.list: time stamp 2024-05-29 06:48:40 is 34302276.73452798 s in the future
tar: ./var/lib/dpkg/info/libpam-modules:arm64.list: time stamp 2024-05-29 06:48:40 is 34302276.73403664 s in the future
tar: ./var/lib/dpkg/info/libp11-kit0:arm64.list: time stamp 2024-05-29 06:48:40 is 34302276.73379166 s in the future
tar: ./var/lib/dpkg/info/libnettle8:arm64.list: time stamp 2024-05-29 06:48:40 is 34302276.73353878 s in the future
tar: ./var/lib/dpkg/info/libhogweed6:arm64.list: time stamp 2024-05-29 06:48:40 is 34302276.73330058 s in the future
tar: ./var/lib/dpkg/info/ncurses-bin.list: time stamp 2024-05-29 06:48:40 is 34302276.73317356 s in the future
tar: ./var/lib/dpkg/info/ncurses-base.list: time stamp 2024-05-29 06:48:40 is 34302276.73303466 s in the future
tar: ./var/lib/dpkg/info/libtinfo6:arm64.list: time stamp 2024-05-29 06:48:40 is 34302276.73277268 s in the future
tar: ./var/lib/dpkg/info/mawk.list: time stamp 2024-05-29 06:48:39 is 34302275.73258308 s in the future
tar: ./var/lib/dpkg/info/liblz4-1:arm64.list: time stamp 2024-05-29 06:48:39 is 34302275.732362 s in the future
tar: ./var/lib/dpkg/info/libzstd1:arm64.list: time stamp 2024-05-29 06:48:39 is 34302275.7321633 s in the future
tar: ./var/lib/dpkg/info/libcrypt1:arm64.list: time stamp 2024-05-29 06:48:39 is 34302275.731937 s in the future
tar: ./var/lib/dpkg/info/libunistring2:arm64.list: time stamp 2024-05-29 06:48:39 is 34302275.73167188 s in the future
tar: ./var/lib/dpkg/info/libtext-glob-perl.list: time stamp 2024-05-29 06:48:39 is 34302275.73155004 s in the future
tar: ./var/lib/dpkg/info/libtasn1-6:arm64.list: time stamp 2024-05-29 06:48:39 is 34302275.73135516 s in the future
tar: ./var/lib/dpkg/info/libsepol2:arm64.list: time stamp 2024-05-29 06:48:39 is 34302275.73111156 s in the future
tar: ./var/lib/dpkg/info/libsemanage2:arm64.list: time stamp 2024-05-29 06:48:39 is 34302275.73085184 s in the future
tar: ./var/lib/dpkg/info/libsemanage-common.list: time stamp 2024-05-29 06:48:39 is 34302275.73069212 s in the future
tar: ./var/lib/dpkg/info/libselinux1:arm64.list: time stamp 2024-05-29 06:48:39 is 34302275.73045566 s in the future
tar: ./var/lib/dpkg/info/libseccomp2:arm64.list: time stamp 2024-05-29 06:48:39 is 34302275.73024848 s in the future
tar: ./var/lib/dpkg/info/libnumber-compare-perl.list: time stamp 2024-05-29 06:48:39 is 34302275.73012664 s in the future
tar: ./var/lib/dpkg/info/libmd0:arm64.list: time stamp 2024-05-29 06:48:39 is 34302275.72992876 s in the future
tar: ./var/lib/dpkg/info/libidn2-0:arm64.list: time stamp 2024-05-29 06:48:38 is 34302274.72970688 s in the future
tar: ./var/lib/dpkg/info/libgpg-error0:arm64.list: time stamp 2024-05-29 06:48:38 is 34302274.72947576 s in the future
tar: ./var/lib/dpkg/info/libgcrypt20:arm64.list: time stamp 2024-05-29 06:48:38 is 34302274.72920768 s in the future
tar: ./var/lib/dpkg/info/libfile-find-rule-perl.list: time stamp 2024-05-29 06:48:38 is 34302274.72909942 s in the future
tar: ./var/lib/dpkg/info/libffi8:arm64.list: time stamp 2024-05-29 06:48:38 is 34302274.7288752 s in the future
tar: ./var/lib/dpkg/info/libcap2:arm64.list: time stamp 2024-05-29 06:48:38 is 34302274.7286658 s in the future
tar: ./var/lib/dpkg/info/libcap-ng0:arm64.list: time stamp 2024-05-29 06:48:38 is 34302274.72845188 s in the future
tar: ./var/lib/dpkg/info/init-system-helpers.list: time stamp 2024-05-29 06:48:38 is 34302274.72832558 s in the future
tar: ./var/lib/dpkg/info/hostname.list: time stamp 2024-05-29 06:48:38 is 34302274.7281969 s in the future
tar: ./var/lib/dpkg/info/gzip.list: time stamp 2024-05-29 06:48:38 is 34302274.72809062 s in the future
tar: ./var/lib/dpkg/info/grep.list: time stamp 2024-05-29 06:48:38 is 34302274.72797254 s in the future
tar: ./var/lib/dpkg/info/libgnutls30:arm64.list: time stamp 2024-05-29 06:48:38 is 34302274.72746768 s in the future
tar: ./var/lib/dpkg/info/gpgv.list: time stamp 2024-05-29 06:48:37 is 34302273.72735002 s in the future
tar: ./var/lib/dpkg/info/libgmp10:arm64.list: time stamp 2024-05-29 06:48:37 is 34302273.72716848 s in the future
tar: ./var/lib/dpkg/info/libc6:arm64.list: time stamp 2024-05-29 06:48:37 is 34302273.72444424 s in the future
tar: ./var/lib/dpkg/info/libc-bin.list: time stamp 2024-05-29 06:48:36 is 34302272.7241756 s in the future
tar: ./var/lib/dpkg/info/libgdbm6:arm64.list: time stamp 2024-05-29 06:48:36 is 34302272.72393252 s in the future
tar: ./var/lib/dpkg/info/libgdbm-compat4:arm64.list: time stamp 2024-05-29 06:48:36 is 34302272.72369258 s in the future
tar: ./var/lib/dpkg/info/libstdc++6:arm64.list: time stamp 2024-05-29 06:48:36 is 34302272.72100012 s in the future
tar: ./var/lib/dpkg/info/libgcc-s1:arm64.list: time stamp 2024-05-29 06:48:35 is 34302271.72074806 s in the future
tar: ./var/lib/dpkg/info/gcc-12-base:arm64.list: time stamp 2024-05-29 06:48:35 is 34302271.72062426 s in the future
tar: ./var/lib/dpkg/info/findutils.list: time stamp 2024-05-29 06:48:35 is 34302271.72047592 s in the future
tar: ./var/lib/dpkg/info/logsave.list: time stamp 2024-05-29 06:48:35 is 34302271.72027486 s in the future
tar: ./var/lib/dpkg/info/libss2:arm64.list: time stamp 2024-05-29 06:48:35 is 34302271.7200191 s in the future
tar: ./var/lib/dpkg/info/libext2fs2:arm64.list: time stamp 2024-05-29 06:48:35 is 34302271.71973834 s in the future
tar: ./var/lib/dpkg/info/libcom-err2:arm64.list: time stamp 2024-05-29 06:48:35 is 34302271.71951242 s in the future
tar: ./var/lib/dpkg/info/e2fsprogs.list: time stamp 2024-05-29 06:48:35 is 34302271.71919204 s in the future
tar: ./var/lib/dpkg/info/dpkg.list: time stamp 2024-05-29 06:48:35 is 34302271.71888208 s in the future
tar: ./var/lib/dpkg/info/diffutils.list: time stamp 2024-05-29 06:48:34 is 34302270.718747 s in the future
tar: ./var/lib/dpkg/info/debianutils.list: time stamp 2024-05-29 06:48:34 is 34302270.7184841 s in the future
tar: ./var/lib/dpkg/info/debian-archive-keyring.list: time stamp 2024-05-29 06:48:34 is 34302270.71815524 s in the future
tar: ./var/lib/dpkg/info/debconf.list: time stamp 2024-05-29 06:48:34 is 34302270.71651728 s in the future
tar: ./var/lib/dpkg/info/libdb5.3:arm64.list: time stamp 2024-05-29 06:48:34 is 34302270.71628728 s in the future
tar: ./var/lib/dpkg/info/dash.list: time stamp 2024-05-29 06:48:34 is 34302270.71603348 s in the future
tar: ./var/lib/dpkg/info/coreutils.list: time stamp 2024-05-29 06:48:34 is 34302270.71579602 s in the future
tar: ./var/lib/dpkg/info/libbz2-1.0:arm64.list: time stamp 2024-05-29 06:48:33 is 34302269.7155772 s in the future
tar: ./var/lib/dpkg/info/bash.list: time stamp 2024-05-29 06:48:33 is 34302269.71530498 s in the future
tar: ./var/lib/dpkg/info/base-passwd.list: time stamp 2024-05-29 06:48:32 is 34302268.71469242 s in the future
tar: ./var/lib/dpkg/info/base-files.list: time stamp 2024-05-29 06:48:32 is 34302268.7144616 s in the future
tar: ./var/lib/dpkg/info/libaudit1:arm64.list: time stamp 2024-05-29 06:48:32 is 34302268.71421474 s in the future
tar: ./var/lib/dpkg/info/libaudit-common.list: time stamp 2024-05-29 06:48:32 is 34302268.71406124 s in the future
tar: ./var/lib/dpkg/info/libattr1:arm64.list: time stamp 2024-05-29 06:48:32 is 34302268.71381962 s in the future
tar: ./var/lib/dpkg/info/libapt-pkg6.0:arm64.list: time stamp 2024-05-29 06:48:32 is 34302268.71299654 s in the future
tar: ./var/lib/dpkg/info/apt.list: time stamp 2024-05-29 06:48:31 is 34302267.71250858 s in the future
tar: ./var/lib/dpkg/info/libacl1:arm64.list: time stamp 2024-05-29 06:48:31 is 34302267.71225292 s in the future
tar: ./var/lib/dpkg/info/format: time stamp 2024-05-29 06:48:25 is 34302261.71217792 s in the future
tar: ./var/lib/dpkg/alternatives/pager: time stamp 2024-05-29 06:48:52 is 34302288.7117955 s in the future
tar: ./var/lib/dpkg/alternatives/rmt: time stamp 2024-05-29 06:48:52 is 34302288.7117272 s in the future
tar: ./var/lib/dpkg/alternatives/builtins.7.gz: time stamp 2024-05-29 06:48:49 is 34302285.71165884 s in the future
tar: ./var/lib/dpkg/alternatives/awk: time stamp 2024-05-29 06:48:49 is 34302285.71159666 s in the future
tar: ./var/lib/dpkg/alternatives/which: time stamp 2024-05-29 06:48:49 is 34302285.71153566 s in the future
tar: ./var/spool/mail: time stamp 2024-05-29 06:48:26 is 34302262.17844892 s in the future
tar: ./var/run: time stamp 2024-05-29 06:48:26 is 34302262.1783435 s in the future
tar: ./var/lock: time stamp 2024-05-29 06:48:26 is 34302262.17829044 s in the future
tar: ./etc/rc0.d/K01hwclock.sh: time stamp 2024-05-29 06:48:49 is 34302285.0637655 s in the future
tar: ./etc/rc6.d/K01hwclock.sh: time stamp 2024-05-29 06:48:49 is 34302285.06364546 s in the future
tar: ./etc/rcS.d/S01hwclock.sh: time stamp 2024-05-29 06:48:49 is 34302285.06359242 s in the future
tar: ./etc/systemd/system/timers.target.wants/dpkg-db-backup.timer: time stamp 2024-05-29 06:48:28 is 34302264.06353354 s in the future
tar: ./etc/systemd/system/timers.target.wants/e2scrub_all.timer: time stamp 2024-05-29 06:48:50 is 34302286.06347056 s in the future
tar: ./etc/systemd/system/timers.target.wants/apt-daily-upgrade.timer: time stamp 2024-05-29 06:48:52 is 34302288.0634123 s in the future
tar: ./etc/systemd/system/timers.target.wants/apt-daily.timer: time stamp 2024-05-29 06:48:52 is 34302288.06335652 s in the future
tar: ./etc/systemd/system/timers.target.wants/fstrim.timer: time stamp 2024-05-29 06:48:53 is 34302289.06330272 s in the future
tar: ./etc/systemd/system/multi-user.target.wants/e2scrub_reap.service: time stamp 2024-05-29 06:48:51 is 34302287.06324696 s in the future
tar: ./etc/localtime: time stamp 2024-05-29 06:48:48 is 34302284.06313926 s in the future
tar: ./dev/fd: time stamp 2024-05-29 06:48:25 is 34302261.06306024 s in the future
tar: ./dev/stdin: time stamp 2024-05-29 06:48:25 is 34302261.06301114 s in the future
tar: ./dev/stdout: time stamp 2024-05-29 06:48:25 is 34302261.06296082 s in the future
tar: ./dev/stderr: time stamp 2024-05-29 06:48:25 is 34302261.06291242 s in the future
tar: ./var/spool: time stamp 2024-05-29 06:48:26 is 34302262.06288032 s in the future
tar: ./var: time stamp 2024-05-29 06:48:26 is 34302262.06284784 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/cross-config-5.36.0: time stamp 2024-05-29 06:48:42 is 34302278.06281354 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl: time stamp 2024-05-29 06:48:21 is 34302257.06278076 s in the future
tar: ./usr/lib/apt/planners: time stamp 2024-05-29 06:48:31 is 34302267.06273586 s in the future
tar: ./usr/lib/apt: time stamp 2024-05-29 06:48:31 is 34302267.06270712 s in the future
tar: ./usr/share/locale/bg/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.05197086 s in the future
tar: ./usr/share/locale/bg: time stamp 2024-05-29 06:48:14 is 34302250.05188028 s in the future
tar: ./usr/share/locale/ca/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.05185148 s in the future
tar: ./usr/share/locale/ca: time stamp 2024-05-29 06:48:14 is 34302250.05181648 s in the future
tar: ./usr/share/locale/cs/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.05178494 s in the future
tar: ./usr/share/locale/cs: time stamp 2024-05-29 06:48:14 is 34302250.05175524 s in the future
tar: ./usr/share/locale/da/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.05172452 s in the future
tar: ./usr/share/locale/da: time stamp 2024-05-29 06:48:14 is 34302250.05169558 s in the future
tar: ./usr/share/locale/de/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.05166564 s in the future
tar: ./usr/share/locale/de: time stamp 2024-05-29 06:48:14 is 34302250.05163694 s in the future
tar: ./usr/share/locale/el/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.05160656 s in the future
tar: ./usr/share/locale/el: time stamp 2024-05-29 06:48:14 is 34302250.05157802 s in the future
tar: ./usr/share/locale/es/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.05154828 s in the future
tar: ./usr/share/locale/es: time stamp 2024-05-29 06:48:14 is 34302250.05151852 s in the future
tar: ./usr/share/locale/eu/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.05148804 s in the future
tar: ./usr/share/locale/eu: time stamp 2024-05-29 06:48:14 is 34302250.05145886 s in the future
tar: ./usr/share/locale/fi/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.05142906 s in the future
tar: ./usr/share/locale/fi: time stamp 2024-05-29 06:48:14 is 34302250.05140058 s in the future
tar: ./usr/share/locale/fr/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.05137076 s in the future
tar: ./usr/share/locale/fr: time stamp 2024-05-29 06:48:14 is 34302250.051342 s in the future
tar: ./usr/share/locale/gl/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.05131222 s in the future
tar: ./usr/share/locale/gl: time stamp 2024-05-29 06:48:14 is 34302250.05128312 s in the future
tar: ./usr/share/locale/hu/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.05125278 s in the future
tar: ./usr/share/locale/hu: time stamp 2024-05-29 06:48:14 is 34302250.05122466 s in the future
tar: ./usr/share/locale/it/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.05119138 s in the future
tar: ./usr/share/locale/it: time stamp 2024-05-29 06:48:14 is 34302250.05116112 s in the future
tar: ./usr/share/locale/ja/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.05113016 s in the future
tar: ./usr/share/locale/ja: time stamp 2024-05-29 06:48:14 is 34302250.05110118 s in the future
tar: ./usr/share/locale/ko/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.05107028 s in the future
tar: ./usr/share/locale/ko: time stamp 2024-05-29 06:48:14 is 34302250.05104086 s in the future
tar: ./usr/share/locale/lt/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.05101062 s in the future
tar: ./usr/share/locale/lt: time stamp 2024-05-29 06:48:14 is 34302250.05098134 s in the future
tar: ./usr/share/locale/nb/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.05095124 s in the future
tar: ./usr/share/locale/nb: time stamp 2024-05-29 06:48:14 is 34302250.05092238 s in the future
tar: ./usr/share/locale/nl/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.05089232 s in the future
tar: ./usr/share/locale/nl: time stamp 2024-05-29 06:48:14 is 34302250.05086352 s in the future
tar: ./usr/share/locale/pl/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.0508339 s in the future
tar: ./usr/share/locale/pl: time stamp 2024-05-29 06:48:14 is 34302250.05080484 s in the future
tar: ./usr/share/locale/pt/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.05077512 s in the future
tar: ./usr/share/locale/pt: time stamp 2024-05-29 06:48:14 is 34302250.0507464 s in the future
tar: ./usr/share/locale/pt_BR/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.05071558 s in the future
tar: ./usr/share/locale/pt_BR: time stamp 2024-05-29 06:48:14 is 34302250.05068582 s in the future
tar: ./usr/share/locale/ro/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.05065474 s in the future
tar: ./usr/share/locale/ro: time stamp 2024-05-29 06:48:14 is 34302250.05062528 s in the future
tar: ./usr/share/locale/ru/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.05059508 s in the future
tar: ./usr/share/locale/ru: time stamp 2024-05-29 06:48:14 is 34302250.05056626 s in the future
tar: ./usr/share/locale/sk/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.0505362 s in the future
tar: ./usr/share/locale/sk: time stamp 2024-05-29 06:48:14 is 34302250.05050754 s in the future
tar: ./usr/share/locale/sl/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.05047732 s in the future
tar: ./usr/share/locale/sl: time stamp 2024-05-29 06:48:14 is 34302250.0504487 s in the future
tar: ./usr/share/locale/sv/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.0504181 s in the future
tar: ./usr/share/locale/sv: time stamp 2024-05-29 06:48:14 is 34302250.05038908 s in the future
tar: ./usr/share/locale/tr/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.0503584 s in the future
tar: ./usr/share/locale/tr: time stamp 2024-05-29 06:48:14 is 34302250.05032976 s in the future
tar: ./usr/share/locale/uk/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.05029962 s in the future
tar: ./usr/share/locale/uk: time stamp 2024-05-29 06:48:14 is 34302250.05027122 s in the future
tar: ./usr/share/locale/vi/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.050241 s in the future
tar: ./usr/share/locale/vi: time stamp 2024-05-29 06:48:14 is 34302250.05021216 s in the future
tar: ./usr/share/locale/zh_CN/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.05018118 s in the future
tar: ./usr/share/locale/zh_CN: time stamp 2024-05-29 06:48:14 is 34302250.05015048 s in the future
tar: ./usr/share/locale/zh_TW/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.05011914 s in the future
tar: ./usr/share/locale/zh_TW: time stamp 2024-05-29 06:48:14 is 34302250.05008934 s in the future
tar: ./usr/share/locale/af/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.05005856 s in the future
tar: ./usr/share/locale/af: time stamp 2024-05-29 06:48:14 is 34302250.05002946 s in the future
tar: ./usr/share/locale/eo/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.0499953 s in the future
tar: ./usr/share/locale/eo: time stamp 2024-05-29 06:48:14 is 34302250.04996478 s in the future
tar: ./usr/share/locale/et/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.04993394 s in the future
tar: ./usr/share/locale/et: time stamp 2024-05-29 06:48:14 is 34302250.04990498 s in the future
tar: ./usr/share/locale/ga/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.049875 s in the future
tar: ./usr/share/locale/ga: time stamp 2024-05-29 06:48:14 is 34302250.04984568 s in the future
tar: ./usr/share/locale/hr/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.04981494 s in the future
tar: ./usr/share/locale/hr: time stamp 2024-05-29 06:48:14 is 34302250.04978496 s in the future
tar: ./usr/share/locale/id/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.04975462 s in the future
tar: ./usr/share/locale/id: time stamp 2024-05-29 06:48:14 is 34302250.04972562 s in the future
tar: ./usr/share/locale/sr/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.04969536 s in the future
tar: ./usr/share/locale/sr: time stamp 2024-05-29 06:48:14 is 34302250.04966672 s in the future
tar: ./usr/share/locale/be/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.04963594 s in the future
tar: ./usr/share/locale/ia/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.04959032 s in the future
tar: ./usr/share/locale/kk/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.04954518 s in the future
tar: ./usr/share/locale/lg/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.04950002 s in the future
tar: ./usr/share/locale/ms/LC_TIME: time stamp 2024-05-29 06:48:34 is 34302270.04945442 s in the future
tar: ./usr/share/man/es: time stamp 2024-05-29 06:48:15 is 34302251.0493227 s in the future
tar: ./usr/share/man/it: time stamp 2024-05-29 06:48:15 is 34302251.04921782 s in the future
tar: ./usr/share/man/ja: time stamp 2024-05-29 06:48:15 is 34302251.0491581 s in the future
tar: ./usr/share/man/pl: time stamp 2024-05-29 06:48:15 is 34302251.0490534 s in the future
tar: ./usr/share/man/sl/man1: time stamp 2024-05-29 06:48:49 is 34302285.0490222 s in the future
tar: ./usr/share/man/cs: time stamp 2024-05-29 06:48:23 is 34302259.04893412 s in the future
tar: ./usr/share/zoneinfo/Antarctica: time stamp 2024-05-29 06:48:45 is 34302281.04883088 s in the future
tar: ./usr/share/zoneinfo/Arctic: time stamp 2024-05-29 06:48:45 is 34302281.04879818 s in the future
tar: ./usr/share/zoneinfo/Asia: time stamp 2024-05-29 06:48:45 is 34302281.04876688 s in the future
tar: ./usr/share/zoneinfo/Brazil: time stamp 2024-05-29 06:48:45 is 34302281.04873692 s in the future
tar: ./usr/share/zoneinfo/Canada: time stamp 2024-05-29 06:48:45 is 34302281.04870724 s in the future
tar: ./usr/share/zoneinfo/Chile: time stamp 2024-05-29 06:48:45 is 34302281.04867736 s in the future
tar: ./usr/share/zoneinfo/Europe: time stamp 2024-05-29 06:48:45 is 34302281.04864768 s in the future
tar: ./usr/share/zoneinfo/Mexico: time stamp 2024-05-29 06:48:45 is 34302281.04861684 s in the future
tar: ./usr/share/zoneinfo/US: time stamp 2024-05-29 06:48:45 is 34302281.04858744 s in the future
tar: ./usr/share/zoneinfo/posix: time stamp 2024-05-29 06:48:45 is 34302281.04855778 s in the future
tar: ./usr/share/zoneinfo/right/Antarctica: time stamp 2024-05-29 06:48:45 is 34302281.04852606 s in the future
tar: ./usr/share/zoneinfo/right/Arctic: time stamp 2024-05-29 06:48:45 is 34302281.0484946 s in the future
tar: ./usr/share/zoneinfo/right/Asia: time stamp 2024-05-29 06:48:45 is 34302281.04846374 s in the future
tar: ./usr/share/zoneinfo/right/Brazil: time stamp 2024-05-29 06:48:45 is 34302281.04843278 s in the future
tar: ./usr/share/zoneinfo/right/Canada: time stamp 2024-05-29 06:48:45 is 34302281.04840096 s in the future
tar: ./usr/share/zoneinfo/right/Chile: time stamp 2024-05-29 06:48:45 is 34302281.04836996 s in the future
tar: ./usr/share/zoneinfo/right/Europe: time stamp 2024-05-29 06:48:45 is 34302281.04831866 s in the future
tar: ./usr/share/zoneinfo/right/Mexico: time stamp 2024-05-29 06:48:45 is 34302281.04828424 s in the future
tar: ./usr/share/zoneinfo/right/US: time stamp 2024-05-29 06:48:45 is 34302281.04825326 s in the future
tar: ./usr/share/zoneinfo/right: time stamp 2024-05-29 06:48:45 is 34302281.04821884 s in the future
tar: ./usr/share/zoneinfo: time stamp 2024-05-29 06:48:45 is 34302281.0481887 s in the future
tar: ./usr: time stamp 2024-05-29 06:48:26 is 34302262.04811066 s in the future
tar: ./etc/rc0.d: time stamp 2024-05-29 06:48:49 is 34302285.04805722 s in the future
tar: ./etc/rc6.d: time stamp 2024-05-29 06:48:49 is 34302285.04802908 s in the future
tar: ./etc/rcS.d: time stamp 2024-05-29 06:48:49 is 34302285.0480011 s in the future
tar: ./etc/systemd/system/timers.target.wants: time stamp 2024-05-29 06:48:53 is 34302289.0479704 s in the future
tar: ./etc/systemd/system/multi-user.target.wants: time stamp 2024-05-29 06:48:51 is 34302287.0479399 s in the future
tar: ./etc/systemd/system: time stamp 2024-05-29 06:48:51 is 34302287.04791112 s in the future
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [gmap_2021-12-17+ds-3.dsc]
I: copying [./gmap_2021-12-17+ds.orig.tar.xz]
I: copying [./gmap_2021-12-17+ds-3.debian.tar.xz]
I: Extracting source
gpgv: Signature made Tue Oct  4 08:26:58 2022 +14
gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv:                issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./gmap_2021-12-17+ds-3.dsc: no acceptable signature found
dpkg-source: info: extracting gmap in gmap-2021-12-17+ds
dpkg-source: info: unpacking gmap_2021-12-17+ds.orig.tar.xz
dpkg-source: info: unpacking gmap_2021-12-17+ds-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying install-data-local
dpkg-source: info: applying remove_getopt_code_copy.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/4584/tmp/hooks/D01_modify_environment starting
debug: Running on codethink13-arm64.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 Apr 28 06:24 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/4584/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/4584/tmp/hooks/D02_print_environment starting
I: set
  BASH=/bin/sh
  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
  BASH_ALIASES=()
  BASH_ARGC=()
  BASH_ARGV=()
  BASH_CMDS=()
  BASH_LINENO=([0]="12" [1]="0")
  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
  BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu")
  BASH_VERSION='5.2.15(1)-release'
  BUILDDIR=/build
  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
  BUILDUSERNAME=pbuilder2
  BUILD_ARCH=arm64
  DEBIAN_FRONTEND=noninteractive
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8'
  DIRSTACK=()
  DISTRIBUTION=bookworm
  EUID=0
  FUNCNAME=([0]="Echo" [1]="main")
  GROUPS=()
  HOME=/var/lib/jenkins
  HOSTNAME=i-capture-the-hostname
  HOSTTYPE=aarch64
  HOST_ARCH=arm64
  IFS=' 	
  '
  LANG=C
  LANGUAGE=nl_BE:nl
  LC_ALL=C
  MACHTYPE=aarch64-unknown-linux-gnu
  MAIL=/var/mail/root
  OPTERR=1
  OPTIND=1
  OSTYPE=linux-gnu
  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
  PBCURRENTCOMMANDLINEOPERATION=build
  PBUILDER_OPERATION=build
  PBUILDER_PKGDATADIR=/usr/share/pbuilder
  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
  PBUILDER_SYSCONFDIR=/etc
  PIPESTATUS=([0]="0")
  POSIXLY_CORRECT=y
  PPID=4584
  PS4='+ '
  PWD=/
  SHELL=/bin/bash
  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
  SHLVL=3
  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2azBVmH2/pbuilderrc_s3Iv --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2azBVmH2/b2 --logfile b2/build.log --extrapackages usrmerge gmap_2021-12-17+ds-3.dsc'
  SUDO_GID=117
  SUDO_UID=110
  SUDO_USER=jenkins
  TERM=unknown
  TZ=/usr/share/zoneinfo/Etc/GMT-14
  UID=0
  USER=root
  USERNAME=root
  _='I: set'
  http_proxy=http://192.168.101.16:3128
I: uname -a
  Linux i-capture-the-hostname 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 May 29  2024 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/4584/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), help2man, libbz2-dev, zlib1g-dev, debhelper
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19616 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on help2man; however:
  Package help2man is not installed.
 pbuilder-satisfydepends-dummy depends on libbz2-dev; however:
  Package libbz2-dev is not installed.
 pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
  Package zlib1g-dev is not installed.
 pbuilder-satisfydepends-dummy depends on debhelper; however:
  Package debhelper is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libbz2-dev{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  bzip2-doc curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 
0 packages upgraded, 34 newly installed, 0 to remove and 0 not upgraded.
Need to get 19.5 MB of archives. After unpacking 76.5 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main arm64 liblocale-gettext-perl arm64 1.07-5 [15.1 kB]
Get: 2 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 3 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB]
Get: 4 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB]
Get: 5 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB]
Get: 6 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB]
Get: 7 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB]
Get: 8 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB]
Get: 9 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB]
Get: 10 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB]
Get: 11 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB]
Get: 12 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB]
Get: 13 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB]
Get: 14 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 15 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get: 16 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB]
Get: 17 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 18 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB]
Get: 19 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 20 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 21 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B]
Get: 22 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 23 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 24 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB]
Get: 25 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB]
Get: 26 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB]
Get: 27 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB]
Get: 28 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB]
Get: 29 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 30 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 31 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB]
Get: 32 http://deb.debian.org/debian bookworm/main arm64 help2man arm64 1.49.3 [198 kB]
Get: 33 http://deb.debian.org/debian bookworm/main arm64 libbz2-dev arm64 1.0.8-5+b1 [31.5 kB]
Get: 34 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB]
Fetched 19.5 MB in 0s (46.8 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package liblocale-gettext-perl.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19616 files and directories currently installed.)
Preparing to unpack .../00-liblocale-gettext-perl_1.07-5_arm64.deb ...
Unpacking liblocale-gettext-perl (1.07-5) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ...
Unpacking sensible-utils (0.0.17+nmu1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../02-libmagic-mgc_1%3a5.44-3_arm64.deb ...
Unpacking libmagic-mgc (1:5.44-3) ...
Selecting previously unselected package libmagic1:arm64.
Preparing to unpack .../03-libmagic1_1%3a5.44-3_arm64.deb ...
Unpacking libmagic1:arm64 (1:5.44-3) ...
Selecting previously unselected package file.
Preparing to unpack .../04-file_1%3a5.44-3_arm64.deb ...
Unpacking file (1:5.44-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../05-gettext-base_0.21-12_arm64.deb ...
Unpacking gettext-base (0.21-12) ...
Selecting previously unselected package libuchardet0:arm64.
Preparing to unpack .../06-libuchardet0_0.0.7-1_arm64.deb ...
Unpacking libuchardet0:arm64 (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../07-groff-base_1.22.4-10_arm64.deb ...
Unpacking groff-base (1.22.4-10) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../08-bsdextrautils_2.38.1-5+b1_arm64.deb ...
Unpacking bsdextrautils (2.38.1-5+b1) ...
Selecting previously unselected package libpipeline1:arm64.
Preparing to unpack .../09-libpipeline1_1.5.7-1_arm64.deb ...
Unpacking libpipeline1:arm64 (1.5.7-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../10-man-db_2.11.2-2_arm64.deb ...
Unpacking man-db (2.11.2-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../11-m4_1.4.19-3_arm64.deb ...
Unpacking m4 (1.4.19-3) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../12-autoconf_2.71-3_all.deb ...
Unpacking autoconf (2.71-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../15-autopoint_0.21-12_all.deb ...
Unpacking autopoint (0.21-12) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../16-libdebhelper-perl_13.11.4_all.deb ...
Unpacking libdebhelper-perl (13.11.4) ...
Selecting previously unselected package libtool.
Preparing to unpack .../17-libtool_2.4.7-5_all.deb ...
Unpacking libtool (2.4.7-5) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../18-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../20-libsub-override-perl_0.09-4_all.deb ...
Unpacking libsub-override-perl (0.09-4) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../22-dh-strip-nondeterminism_1.13.1-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.13.1-1) ...
Selecting previously unselected package libelf1:arm64.
Preparing to unpack .../23-libelf1_0.188-2.1_arm64.deb ...
Unpacking libelf1:arm64 (0.188-2.1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../24-dwz_0.15-1_arm64.deb ...
Unpacking dwz (0.15-1) ...
Selecting previously unselected package libicu72:arm64.
Preparing to unpack .../25-libicu72_72.1-3_arm64.deb ...
Unpacking libicu72:arm64 (72.1-3) ...
Selecting previously unselected package libxml2:arm64.
Preparing to unpack .../26-libxml2_2.9.14+dfsg-1.2_arm64.deb ...
Unpacking libxml2:arm64 (2.9.14+dfsg-1.2) ...
Selecting previously unselected package gettext.
Preparing to unpack .../27-gettext_0.21-12_arm64.deb ...
Unpacking gettext (0.21-12) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../30-debhelper_13.11.4_all.deb ...
Unpacking debhelper (13.11.4) ...
Selecting previously unselected package help2man.
Preparing to unpack .../31-help2man_1.49.3_arm64.deb ...
Unpacking help2man (1.49.3) ...
Selecting previously unselected package libbz2-dev:arm64.
Preparing to unpack .../32-libbz2-dev_1.0.8-5+b1_arm64.deb ...
Unpacking libbz2-dev:arm64 (1.0.8-5+b1) ...
Selecting previously unselected package zlib1g-dev:arm64.
Preparing to unpack .../33-zlib1g-dev_1%3a1.2.13.dfsg-1_arm64.deb ...
Unpacking zlib1g-dev:arm64 (1:1.2.13.dfsg-1) ...
Setting up libpipeline1:arm64 (1.5.7-1) ...
Setting up libicu72:arm64 (72.1-3) ...
Setting up bsdextrautils (2.38.1-5+b1) ...
Setting up libmagic-mgc (1:5.44-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.11.4) ...
Setting up libmagic1:arm64 (1:5.44-3) ...
Setting up gettext-base (0.21-12) ...
Setting up m4 (1.4.19-3) ...
Setting up file (1:5.44-3) ...
Setting up autotools-dev (20220109.1) ...
Setting up autopoint (0.21-12) ...
Setting up autoconf (2.71-3) ...
Setting up zlib1g-dev:arm64 (1:1.2.13.dfsg-1) ...
Setting up sensible-utils (0.0.17+nmu1) ...
Setting up libuchardet0:arm64 (0.0.7-1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libelf1:arm64 (0.188-2.1) ...
Setting up libxml2:arm64 (2.9.14+dfsg-1.2) ...
Setting up liblocale-gettext-perl (1.07-5) ...
Setting up libbz2-dev:arm64 (1.0.8-5+b1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up gettext (0.21-12) ...
Setting up libtool (2.4.7-5) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up help2man (1.49.3) ...
Setting up dh-autoreconf (20) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.22.4-10) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.11.2-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up debhelper (13.11.4) ...
Processing triggers for libc-bin (2.36-9) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
usrmerge is already the newest version (35).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: user script /srv/workspace/pbuilder/4584/tmp/hooks/A99_set_merged_usr starting
Re-configuring usrmerge...
I: user script /srv/workspace/pbuilder/4584/tmp/hooks/A99_set_merged_usr finished
hostname: Temporary failure in name resolution
I: Running cd /build/gmap-2021-12-17+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../gmap_2021-12-17+ds-3_source.changes
dpkg-buildpackage: info: source package gmap
dpkg-buildpackage: info: source version 2021-12-17+ds-3
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
 debian/rules clean
dh  clean
   dh_clean
 debian/rules binary
dh  binary
   dh_update_autotools_config
   dh_autoreconf
configure.ac:78: warning: The macro `AC_CONFIG_HEADER' is obsolete.
configure.ac:78: You should run autoupdate.
./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from...
configure.ac:78: the top level
configure.ac:87: warning: The macro `AC_CANONICAL_SYSTEM' is obsolete.
configure.ac:87: You should run autoupdate.
./lib/autoconf/general.m4:2081: AC_CANONICAL_SYSTEM is expanded from...
configure.ac:87: the top level
configure.ac:117: warning: The macro `AC_HELP_STRING' is obsolete.
configure.ac:117: You should run autoupdate.
./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
configure.ac:117: the top level
configure.ac:124: warning: The macro `AC_HELP_STRING' is obsolete.
configure.ac:124: You should run autoupdate.
./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
configure.ac:124: the top level
configure.ac:173: warning: The macro `AC_HELP_STRING' is obsolete.
configure.ac:173: You should run autoupdate.
./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
configure.ac:173: the top level
configure.ac:180: warning: The macro `AC_LANG_C' is obsolete.
configure.ac:180: You should run autoupdate.
./lib/autoconf/c.m4:72: AC_LANG_C is expanded from...
config/acx_pthread.m4:47: ACX_PTHREAD is expanded from...
configure.ac:180: the top level
configure.ac:180: warning: The macro `AC_TRY_LINK' is obsolete.
configure.ac:180: You should run autoupdate.
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
config/acx_pthread.m4:47: ACX_PTHREAD is expanded from...
configure.ac:180: the top level
configure.ac:189: warning: The macro `AC_LANG_C' is obsolete.
configure.ac:189: You should run autoupdate.
./lib/autoconf/c.m4:72: AC_LANG_C is expanded from...
config/acx_pthread.m4:47: ACX_PTHREAD is expanded from...
configure.ac:189: the top level
configure.ac:189: warning: The macro `AC_TRY_LINK' is obsolete.
configure.ac:189: You should run autoupdate.
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
config/acx_pthread.m4:47: ACX_PTHREAD is expanded from...
configure.ac:189: the top level
configure.ac:195: warning: The macro `AC_HEADER_STDC' is obsolete.
configure.ac:195: You should run autoupdate.
./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from...
configure.ac:195: the top level
configure.ac:229: warning: The macro `AC_HELP_STRING' is obsolete.
configure.ac:229: You should run autoupdate.
./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
configure.ac:229: the top level
configure.ac:251: warning: The macro `AC_HELP_STRING' is obsolete.
configure.ac:251: You should run autoupdate.
./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
configure.ac:251: the top level
configure.ac:258: warning: The macro `AC_LANG_C' is obsolete.
configure.ac:258: You should run autoupdate.
./lib/autoconf/c.m4:72: AC_LANG_C is expanded from...
config/acx_mmap_fixed.m4:1: ACX_MMAP_FIXED is expanded from...
configure.ac:258: the top level
configure.ac:258: warning: The macro `AC_TRY_LINK' is obsolete.
configure.ac:258: You should run autoupdate.
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
config/acx_mmap_fixed.m4:1: ACX_MMAP_FIXED is expanded from...
configure.ac:258: the top level
configure.ac:259: warning: The macro `AC_LANG_C' is obsolete.
configure.ac:259: You should run autoupdate.
./lib/autoconf/c.m4:72: AC_LANG_C is expanded from...
config/acx_mmap_variable.m4:1: ACX_MMAP_VARIABLE is expanded from...
configure.ac:259: the top level
configure.ac:259: warning: The macro `AC_TRY_LINK' is obsolete.
configure.ac:259: You should run autoupdate.
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
config/acx_mmap_variable.m4:1: ACX_MMAP_VARIABLE is expanded from...
configure.ac:259: the top level
configure.ac:268: warning: The macro `AC_LANG_C' is obsolete.
configure.ac:268: You should run autoupdate.
./lib/autoconf/c.m4:72: AC_LANG_C is expanded from...
config/acx_mmap_fixed.m4:1: ACX_MMAP_FIXED is expanded from...
configure.ac:268: the top level
configure.ac:268: warning: The macro `AC_TRY_LINK' is obsolete.
configure.ac:268: You should run autoupdate.
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
config/acx_mmap_fixed.m4:1: ACX_MMAP_FIXED is expanded from...
configure.ac:268: the top level
configure.ac:269: warning: The macro `AC_LANG_C' is obsolete.
configure.ac:269: You should run autoupdate.
./lib/autoconf/c.m4:72: AC_LANG_C is expanded from...
config/acx_mmap_variable.m4:1: ACX_MMAP_VARIABLE is expanded from...
configure.ac:269: the top level
configure.ac:269: warning: The macro `AC_TRY_LINK' is obsolete.
configure.ac:269: You should run autoupdate.
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
config/acx_mmap_variable.m4:1: ACX_MMAP_VARIABLE is expanded from...
configure.ac:269: the top level
configure.ac:292: warning: The macro `AC_TRY_RUN' is obsolete.
configure.ac:292: You should run autoupdate.
./lib/autoconf/general.m4:2997: AC_TRY_RUN is expanded from...
lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from...
lib/m4sugar/m4sh.m4:699: AS_IF is expanded from...
./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
config/fopen.m4:25: ACX_FUNC_FOPEN_BINARY is expanded from...
configure.ac:292: the top level
configure.ac:293: warning: The macro `AC_TRY_RUN' is obsolete.
configure.ac:293: You should run autoupdate.
./lib/autoconf/general.m4:2997: AC_TRY_RUN is expanded from...
lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from...
lib/m4sugar/m4sh.m4:699: AS_IF is expanded from...
./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
config/fopen.m4:26: ACX_FUNC_FOPEN_TEXT is expanded from...
configure.ac:293: the top level
configure.ac:327: warning: The macro `AC_LANG_C' is obsolete.
configure.ac:327: You should run autoupdate.
./lib/autoconf/c.m4:72: AC_LANG_C is expanded from...
config/sse2_shift_defect.m4:2: ACX_SSE2_SHIFT_DEFECT is expanded from...
configure.ac:327: the top level
configure.ac:332: warning: The macro `AC_HELP_STRING' is obsolete.
configure.ac:332: You should run autoupdate.
./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
configure.ac:332: the top level
configure.ac:384: warning: The macro `AC_HELP_STRING' is obsolete.
configure.ac:384: You should run autoupdate.
./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
configure.ac:384: the top level
configure.ac:436: warning: The macro `AC_HELP_STRING' is obsolete.
configure.ac:436: You should run autoupdate.
./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
configure.ac:436: the top level
configure.ac:462: warning: The macro `AC_HELP_STRING' is obsolete.
configure.ac:462: You should run autoupdate.
./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
configure.ac:462: the top level
configure.ac:511: warning: The macro `AC_HELP_STRING' is obsolete.
configure.ac:511: You should run autoupdate.
./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
configure.ac:511: the top level
configure.ac:106: installing 'config/compile'
configure.ac:87: installing 'config/config.guess'
configure.ac:87: installing 'config/config.sub'
configure.ac:111: installing 'config/install-sh'
configure.ac:111: installing 'config/missing'
Makefile.am: installing './INSTALL'
src/Makefile.am: installing 'config/depcomp'
src/Makefile.am:995: warning: variable 'dist_bulk_counts_SOURCES' is defined but no program or
src/Makefile.am:995: library has 'bulk_counts' as canonical name (possible typo)
src/Makefile.am:911: warning: variable 'dist_iit_pileup_SOURCES' is defined but no program or
src/Makefile.am:911: library has 'iit_pileup' as canonical name (possible typo)
src/Makefile.am:1021: warning: variable 'dist_sc_counts_SOURCES' is defined but no program or
src/Makefile.am:1021: library has 'sc_counts' as canonical name (possible typo)
src/Makefile.am:951: warning: variable 'dist_umi_correct_SOURCES' is defined but no program or
src/Makefile.am:951: library has 'umi_correct' as canonical name (possible typo)
src/Makefile.am:602: warning: variable 'dist_uniqscan_SOURCES' is defined but no program or
src/Makefile.am:602: library has 'uniqscan' as canonical name (possible typo)
src/Makefile.am:657: warning: variable 'dist_uniqscanl_SOURCES' is defined but no program or
src/Makefile.am:657: library has 'uniqscanl' as canonical name (possible typo)
src/Makefile.am:970: warning: variable 'dist_velocity_counts_SOURCES' is defined but no program or
src/Makefile.am:970: library has 'velocity_counts' as canonical name (possible typo)
src/Makefile.am:994: warning: variable 'bulk_counts_LDADD' is defined but no program or
src/Makefile.am:994: library has 'bulk_counts' as canonical name (possible typo)
src/Makefile.am:910: warning: variable 'iit_pileup_LDADD' is defined but no program or
src/Makefile.am:910: library has 'iit_pileup' as canonical name (possible typo)
src/Makefile.am:1020: warning: variable 'sc_counts_LDADD' is defined but no program or
src/Makefile.am:1020: library has 'sc_counts' as canonical name (possible typo)
src/Makefile.am:950: warning: variable 'umi_correct_LDADD' is defined but no program or
src/Makefile.am:950: library has 'umi_correct' as canonical name (possible typo)
src/Makefile.am:600: warning: variable 'uniqscan_LDADD' is defined but no program or
src/Makefile.am:600: library has 'uniqscan' as canonical name (possible typo)
src/Makefile.am:655: warning: variable 'uniqscanl_LDADD' is defined but no program or
src/Makefile.am:655: library has 'uniqscanl' as canonical name (possible typo)
src/Makefile.am:969: warning: variable 'velocity_counts_LDADD' is defined but no program or
src/Makefile.am:969: library has 'velocity_counts' as canonical name (possible typo)
src/Makefile.am:993: warning: variable 'bulk_counts_LDFLAGS' is defined but no program or
src/Makefile.am:993: library has 'bulk_counts' as canonical name (possible typo)
src/Makefile.am:909: warning: variable 'iit_pileup_LDFLAGS' is defined but no program or
src/Makefile.am:909: library has 'iit_pileup' as canonical name (possible typo)
src/Makefile.am:1019: warning: variable 'sc_counts_LDFLAGS' is defined but no program or
src/Makefile.am:1019: library has 'sc_counts' as canonical name (possible typo)
src/Makefile.am:949: warning: variable 'umi_correct_LDFLAGS' is defined but no program or
src/Makefile.am:949: library has 'umi_correct' as canonical name (possible typo)
src/Makefile.am:599: warning: variable 'uniqscan_LDFLAGS' is defined but no program or
src/Makefile.am:599: library has 'uniqscan' as canonical name (possible typo)
src/Makefile.am:654: warning: variable 'uniqscanl_LDFLAGS' is defined but no program or
src/Makefile.am:654: library has 'uniqscanl' as canonical name (possible typo)
src/Makefile.am:968: warning: variable 'velocity_counts_LDFLAGS' is defined but no program or
src/Makefile.am:968: library has 'velocity_counts' as canonical name (possible typo)
parallel-tests: installing 'config/test-driver'
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/build/gmap-2021-12-17+ds'
dh_auto_configure -- --with-gmapdb=/var/cache/gmap \
--bindir=/usr/lib/gmap --disable-simd
	./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-gmapdb=/var/cache/gmap --bindir=/usr/lib/gmap --disable-simd
checking package version... 2021-12-17
loading default site script ./config.site
checking CFLAGS... -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security
checking build system type... aarch64-unknown-linux-gnu
checking host system type... aarch64-unknown-linux-gnu
checking target system type... aarch64-unknown-linux-gnu
checking for non-Intel CPU... no
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports the include directive... yes (GNU style)
checking whether make supports nested variables... yes
checking dependency style of gcc... none
checking whether to enable maintainer-specific portions of Makefiles... no
checking bindir... /usr/lib/gmap
checking for a working version of perl... /usr/bin/perl
checking for gcc... (cached) gcc
checking whether the compiler supports GNU C... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to enable C11 features... (cached) none needed
checking whether gcc understands -c and -o together... (cached) yes
checking for C compiler vendor... gnu
checking for rint in -lm... yes
checking for pthreads feature... not specified so enabled by default
checking for the pthreads library -lpthreads... no
checking whether pthreads work without any flags... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking if more special flags are required for pthreads... no
checking for cc_r... gcc
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for fcntl.h... yes
checking for limits.h... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for strings.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/types.h... (cached) yes
checking for inline... inline
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for working volatile... yes
checking for size_t... yes
checking for off_t... yes
checking for caddr_t... yes
checking size of unsigned long... 8
checking size of unsigned long long... 8
checking size of off_t... 8
checking for _LARGEFILE_SOURCE value needed for large files... no
checking whether alloca is enabled... not specified so disabled by default
checking whether mmap is enabled... not specified so enabled by default
checking for working mmap with MAP_FIXED... yes
checking for working mmap with MAP_VARIABLE... no
checking for MAP_FILE in mmap... yes
checking for MAP_VARIABLE in mmap... no
checking for MAP_SHARED in mmap... yes
checking for MAP_PRIVATE in mmap... yes
checking for MAP_FAILED in mmap... yes
checking for MADV_DONTNEED in madvise... yes
checking for MADV_WILLNEED in madvise... yes
checking for MADV_RANDOM in madvise... yes
checking for MADV_SEQUENTIAL in madvise... yes
checking for SHM_NORESERVE in shmget... yes
checking for ceil... yes
checking for floor... yes
checking for index... yes
checking for log... yes
checking for madvise... yes
checking for memcpy... yes
checking for memmove... yes
checking for memset... yes
checking for munmap... yes
checking for pow... yes
checking for rint... yes
checking for stat64... yes
checking for strtoul... yes
checking for sysconf... yes
checking for sysctl... no
checking for sigaction... yes
checking for shmget... yes
checking for shmctl... yes
checking for shmat... yes
checking for shmdt... yes
checking for semget... yes
checking for semctl... yes
checking for semop... yes
checking for struct stat64... no
checking for pagesize via sysconf... yes
checking for pagesize via sysctl... no
checking whether fopen accepts "b" mode... yes
checking whether fopen accepts "t" mode... yes
checking for gcc options needed to detect all undeclared functions... none needed
checking whether C compiler accepts -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -mpopcnt... no
configure: WARNING: Your compiler does not support -mpopcnt
checking whether __builtin_popcount is declared... yes
checking whether __builtin_popcount works... yes
checking whether __builtin_clz is declared... yes
checking whether __builtin_clz works... yes
checking whether __builtin_ctz is declared... yes
checking whether __builtin_ctz works... yes
checking for bsr instruction in assembly... yes
checking compiler is defective and requires an immediate in sse2 shift commands... yes
checking for _mm_extract_epi64... no
checking for _mm_popcnt_u64... no
checking for whether simd is enabled... disabled
checking for sse2 support... no
checking for ssse3 support... no
checking for sse4.1 support... no
checking for sse4.2 support... no
checking for popcnt support... no
checking for bmi1 support... no
checking for avx2 support... no
checking for bmi2 support... no
checking for avx512 support... no
checking for avx512bw and avx512vl support... no
checking gmapdb... /var/cache/gmap
checking MAX_STACK_READLENGTH... 300
checking for zlib support... enabled
checking for zlib.h... yes
checking for gzopen in -lz... yes
checking for gzeof in -lz... yes
checking for gzgetc in -lz... yes
checking for gzgets in -lz... yes
checking for gzclose in -lz... yes
checking if zlib package is complete... working
checking for gzbuffer in -lz... yes
checking for bzlib support... enabled
checking for bzlib.h... yes
checking for BZ2_bzReadOpen in -lbz2... yes
checking for BZ2_bzRead in -lbz2... yes
checking for BZ2_bzReadClose in -lbz2... yes
checking if bzlib package is complete... working
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating util/Makefile
config.status: creating util/gmap_process.pl
config.status: creating util/gmap_build.pl
config.status: creating util/gmap_cat.pl
config.status: creating util/md_coords.pl
config.status: creating util/fa_coords.pl
config.status: creating util/psl_splicesites.pl
config.status: creating util/psl_introns.pl
config.status: creating util/psl_genes.pl
config.status: creating util/ensembl_genes.pl
config.status: creating util/gtf_splicesites.pl
config.status: creating util/gtf_transcript_splicesites.pl
config.status: creating util/gtf_introns.pl
config.status: creating util/gtf_genes.pl
config.status: creating util/gff3_splicesites.pl
config.status: creating util/gff3_introns.pl
config.status: creating util/gff3_genes.pl
config.status: creating util/dbsnp_iit.pl
config.status: creating util/gvf_iit.pl
config.status: creating util/vcf_iit.pl
config.status: creating tests/Makefile
config.status: creating tests/align.test
config.status: creating tests/coords1.test
config.status: creating tests/setup1.test
config.status: creating tests/iit.test
config.status: creating src/config.h
config.status: executing depfiles commands
configure: WARNING:

WARNING: Your C compiler does not know how to handle a particular
form of the SSE2 shift commands, and must be somewhat old (probably
gcc 4.1 or gcc 4.2).  The configure script has therefore substituted
alternate C code that your compiler can handle.  However, for
optimal performance, you may want to obtain a more recent C compiler
and build the code with that.

checking standard compiler and flags to be used... gcc -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security
checking standard linker flags to be used... 
checking pthread compiler flags to be used... 
checking popcnt flags to be used... 
checking compile level... none
make[1]: Leaving directory '/build/gmap-2021-12-17+ds'
   dh_auto_build
	make -j8
make[1]: Entering directory '/build/gmap-2021-12-17+ds'
Making all in src
make[2]: Entering directory '/build/gmap-2021-12-17+ds/src'
make  all-am
make[3]: Entering directory '/build/gmap-2021-12-17+ds/src'
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -DMAIN=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cpuid-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap-gmap_select.o `test -f 'gmap_select.c' || echo './'`gmap_select.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl-gmapl_select.o `test -f 'gmapl_select.c' || echo './'`gmapl_select.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-except.o `test -f 'except.c' || echo './'`except.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-assert.o `test -f 'assert.c' || echo './'`assert.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-mem.o `test -f 'mem.c' || echo './'`mem.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-intlist.o `test -f 'intlist.c' || echo './'`intlist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-list.o `test -f 'list.c' || echo './'`list.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c
littleendian.c: In function 'Littleendian_write_char':
littleendian.c:14:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint':
littleendian.c:27:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint8':
littleendian.c:45:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint8_as_uint':
littleendian.c:60:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
littleendian.c:66:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_char':
bigendian.c:16:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_uint':
bigendian.c:215:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_fileio_read_uint':
bigendian.c:299:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_uint8':
bigendian.c:367:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_fileio_read_uint8':
bigendian.c:484:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-interval.o `test -f 'interval.c' || echo './'`interval.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-access.o `test -f 'access.c' || echo './'`access.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-filestring.o `test -f 'filestring.c' || echo './'`filestring.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-md5.o `test -f 'md5.c' || echo './'`md5.c
access.c: In function 'copy_memory_from_file':
access.c:532:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:537:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:543:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:548:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:554:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:559:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:565:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:570:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c: In function 'copy_limited_from_file':
access.c:596:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:598:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:604:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:606:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:612:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:614:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:620:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:622:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c
In file included from iit-read-univ.c:12:
iit-read-univ.c: In function 'read_tree_univ':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1068:9: note: in expansion of macro 'FREAD_UINT'
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1070:9: note: in expansion of macro 'FREAD_INT'
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1071:9: note: in expansion of macro 'FREAD_INT'
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1072:9: note: in expansion of macro 'FREAD_INT'
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1073:9: note: in expansion of macro 'FREAD_INT'
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
iit-read-univ.c: In function 'read_intervals_univ':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1121:7: note: in expansion of macro 'FREAD_UINT8'
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1122:7: note: in expansion of macro 'FREAD_UINT8'
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1123:7: note: in expansion of macro 'FREAD_INT'
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1132:7: note: in expansion of macro 'FREAD_UINT'
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1134:7: note: in expansion of macro 'FREAD_UINT'
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1136:7: note: in expansion of macro 'FREAD_INT'
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
iit-read-univ.c: In function 'read_words':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1196:3: note: in expansion of macro 'FREAD_UINT'
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
iit-read-univ.c: In function 'read_annotations':
iit-read-univ.c:1389:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1393:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1397:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1401:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1405:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c: In function 'read_words_debug':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1278:3: note: in expansion of macro 'FREAD_UINT'
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-fopen.o `test -f 'fopen.c' || echo './'`fopen.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-sequence.o `test -f 'sequence.c' || echo './'`sequence.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-genome.o `test -f 'genome.c' || echo './'`genome.c
In file included from iit-read.c:12:
iit-read.c: In function 'IIT_read_divint':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2588:5: note: in expansion of macro 'FREAD_INT'
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'IIT_read':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:3103:5: note: in expansion of macro 'FREAD_INT'
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'read_tree':
iit-read.c:1760:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1761:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1762:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1763:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1764:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'read_intervals':
iit-read.c:1889:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1890:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1892:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1896:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c
iit-read.c: In function 'read_words':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2144:5: note: in expansion of macro 'FREAD_UINT8'
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2150:5: note: in expansion of macro 'FREAD_UINT'
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
iit-read.c: In function 'read_annotations':
iit-read.c:2482:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2486:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2491:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2497:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2502:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2513:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2519:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2524:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2535:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'IIT_debug':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:3524:5: note: in expansion of macro 'FREAD_INT'
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'read_words_debug':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2288:5: note: in expansion of macro 'FREAD_UINT8'
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2293:5: note: in expansion of macro 'FREAD_UINT'
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-chrom.o `test -f 'chrom.c' || echo './'`chrom.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-datadir.o `test -f 'datadir.c' || echo './'`datadir.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-parserange.o `test -f 'parserange.c' || echo './'`parserange.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-getline.o `test -f 'getline.c' || echo './'`getline.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_genome-get-genome.o `test -f 'get-genome.c' || echo './'`get-genome.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-except.o `test -f 'except.c' || echo './'`except.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-assert.o `test -f 'assert.c' || echo './'`assert.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-mem.o `test -f 'mem.c' || echo './'`mem.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-list.o `test -f 'list.c' || echo './'`list.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c
littleendian.c: In function 'Littleendian_write_char':
littleendian.c:14:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint':
littleendian.c:27:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint8':
littleendian.c:45:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint8_as_uint':
littleendian.c:60:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
littleendian.c:66:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c
bigendian.c: In function 'Bigendian_write_char':
bigendian.c:16:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_uint':
bigendian.c:215:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_fileio_read_uint':
bigendian.c:299:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_uint8':
bigendian.c:367:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_fileio_read_uint8':
bigendian.c:484:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-interval.o `test -f 'interval.c' || echo './'`interval.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-access.o `test -f 'access.c' || echo './'`access.c
access.c: In function 'copy_memory_from_file':
access.c:532:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:537:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:543:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:548:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:554:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:559:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:565:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:570:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c: In function 'copy_limited_from_file':
access.c:596:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:598:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:604:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:606:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:612:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:614:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:620:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:622:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-iit-write-univ.o `test -f 'iit-write-univ.c' || echo './'`iit-write-univ.c
In file included from iit-read-univ.c:12:
iit-read-univ.c: In function 'read_tree_univ':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1068:9: note: in expansion of macro 'FREAD_UINT'
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1070:9: note: in expansion of macro 'FREAD_INT'
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1071:9: note: in expansion of macro 'FREAD_INT'
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1072:9: note: in expansion of macro 'FREAD_INT'
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1073:9: note: in expansion of macro 'FREAD_INT'
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
iit-read-univ.c: In function 'read_intervals_univ':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1121:7: note: in expansion of macro 'FREAD_UINT8'
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1122:7: note: in expansion of macro 'FREAD_UINT8'
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1123:7: note: in expansion of macro 'FREAD_INT'
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1132:7: note: in expansion of macro 'FREAD_UINT'
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1134:7: note: in expansion of macro 'FREAD_UINT'
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1136:7: note: in expansion of macro 'FREAD_INT'
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
iit-read-univ.c: In function 'read_words':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1196:3: note: in expansion of macro 'FREAD_UINT'
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
iit-read-univ.c: In function 'read_annotations':
iit-read-univ.c:1389:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1393:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1397:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1401:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1405:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c: In function 'read_words_debug':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1278:3: note: in expansion of macro 'FREAD_UINT'
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c
In file included from iit-read.c:12:
iit-read.c: In function 'IIT_read_divint':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2588:5: note: in expansion of macro 'FREAD_INT'
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'IIT_read':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:3103:5: note: in expansion of macro 'FREAD_INT'
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'read_tree':
iit-read.c:1760:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1761:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1762:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1763:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1764:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'read_intervals':
iit-read.c:1889:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1890:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1892:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1896:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'read_words':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2144:5: note: in expansion of macro 'FREAD_UINT8'
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2150:5: note: in expansion of macro 'FREAD_UINT'
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
iit-read.c: In function 'read_annotations':
iit-read.c:2482:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2486:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2491:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2497:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2502:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2513:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2519:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2524:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2535:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'IIT_debug':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:3524:5: note: in expansion of macro 'FREAD_INT'
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'read_words_debug':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2288:5: note: in expansion of macro 'FREAD_UINT8'
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2293:5: note: in expansion of macro 'FREAD_UINT'
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-md5.o `test -f 'md5.c' || echo './'`md5.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-fopen.o `test -f 'fopen.c' || echo './'`fopen.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-genome.o `test -f 'genome.c' || echo './'`genome.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c
In file included from compress-write.c:21:
compress-write.c: In function 'Compress_cat':
littleendian.h:26:29: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
compress-write.c:877:5: note: in expansion of macro 'FREAD_UINTS'
  877 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-compress.o `test -f 'compress.c' || echo './'`compress.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-popcount.o `test -f 'popcount.c' || echo './'`popcount.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo './'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c
indexdb.c: In function 'positions_read_multiple':
indexdb.c:1951:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1951 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-regiondb.o `test -f 'regiondb.c' || echo './'`regiondb.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-regiondb-write.o `test -f 'regiondb-write.c' || echo './'`regiondb-write.c
In file included from regiondb-write.c:19:
regiondb-write.c: In function 'Region_read':
littleendian.h:22:31: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   22 | #define FREAD_USHORTS(a,n,fp) fread(a,sizeof(UINT2),n,fp)
      |                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~
regiondb-write.c:478:3: note: in expansion of macro 'FREAD_USHORTS'
  478 |   FREAD_USHORTS(buffer->offsets,offsets_size,fp);
      |   ^~~~~~~~~~~~~
littleendian.h:22:31: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   22 | #define FREAD_USHORTS(a,n,fp) fread(a,sizeof(UINT2),n,fp)
      |                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~
regiondb-write.c:479:3: note: in expansion of macro 'FREAD_USHORTS'
  479 |   FREAD_USHORTS(buffer->positions,REGION_LENGTH,fp);
      |   ^~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-table.o `test -f 'table.c' || echo './'`table.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-tableuint.o `test -f 'tableuint.c' || echo './'`tableuint.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-tableuint8.o `test -f 'tableuint8.c' || echo './'`tableuint8.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-tableint.o `test -f 'tableint.c' || echo './'`tableint.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-chrom.o `test -f 'chrom.c' || echo './'`chrom.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-parserange.o `test -f 'parserange.c' || echo './'`parserange.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-getline.o `test -f 'getline.c' || echo './'`getline.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapindex-gmapindex.o `test -f 'gmapindex.c' || echo './'`gmapindex.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-except.o `test -f 'except.c' || echo './'`except.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-assert.o `test -f 'assert.c' || echo './'`assert.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-mem.o `test -f 'mem.c' || echo './'`mem.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c
littleendian.c: In function 'Littleendian_write_char':
littleendian.c:14:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint':
littleendian.c:27:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint8':
littleendian.c:45:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint8_as_uint':
littleendian.c:60:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
littleendian.c:66:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c
bigendian.c: In function 'Bigendian_write_char':
bigendian.c:16:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_uint':
bigendian.c:215:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_fileio_read_uint':
bigendian.c:299:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_uint8':
bigendian.c:367:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_fileio_read_uint8':
bigendian.c:484:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-access.o `test -f 'access.c' || echo './'`access.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c
access.c: In function 'copy_memory_from_file':
access.c:532:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:537:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:543:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:548:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:554:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:559:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:565:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:570:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c: In function 'copy_limited_from_file':
access.c:596:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:598:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:604:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:606:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:612:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:614:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:620:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:622:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-interval.o `test -f 'interval.c' || echo './'`interval.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-intlist.o `test -f 'intlist.c' || echo './'`intlist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-list.o `test -f 'list.c' || echo './'`list.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-filestring.o `test -f 'filestring.c' || echo './'`filestring.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c
In file included from iit-read-univ.c:12:
iit-read-univ.c: In function 'read_tree_univ':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1068:9: note: in expansion of macro 'FREAD_UINT'
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1070:9: note: in expansion of macro 'FREAD_INT'
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1071:9: note: in expansion of macro 'FREAD_INT'
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1072:9: note: in expansion of macro 'FREAD_INT'
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1073:9: note: in expansion of macro 'FREAD_INT'
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
iit-read-univ.c: In function 'read_intervals_univ':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1121:7: note: in expansion of macro 'FREAD_UINT8'
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1122:7: note: in expansion of macro 'FREAD_UINT8'
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1123:7: note: in expansion of macro 'FREAD_INT'
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1132:7: note: in expansion of macro 'FREAD_UINT'
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1134:7: note: in expansion of macro 'FREAD_UINT'
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1136:7: note: in expansion of macro 'FREAD_INT'
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
iit-read-univ.c: In function 'read_words':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1196:3: note: in expansion of macro 'FREAD_UINT'
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
iit-read-univ.c: In function 'read_annotations':
iit-read-univ.c:1389:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1393:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1397:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1401:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1405:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c: In function 'read_words_debug':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1278:3: note: in expansion of macro 'FREAD_UINT'
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c
In file included from iit-read.c:12:
iit-read.c: In function 'IIT_read_divint':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2588:5: note: in expansion of macro 'FREAD_INT'
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'IIT_read':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:3103:5: note: in expansion of macro 'FREAD_INT'
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'read_tree':
iit-read.c:1760:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1761:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1762:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1763:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1764:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'read_intervals':
iit-read.c:1889:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1890:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1892:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1896:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'read_words':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2144:5: note: in expansion of macro 'FREAD_UINT8'
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2150:5: note: in expansion of macro 'FREAD_UINT'
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
iit-read.c: In function 'read_annotations':
iit-read.c:2482:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2486:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2491:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2497:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2502:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2513:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2519:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2524:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2535:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'IIT_debug':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:3524:5: note: in expansion of macro 'FREAD_INT'
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'read_words_debug':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2288:5: note: in expansion of macro 'FREAD_UINT8'
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2293:5: note: in expansion of macro 'FREAD_UINT'
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo './'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c
indexdb.c: In function 'positions_read_multiple':
indexdb.c:1951:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1951 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c
In file included from compress-write.c:21:
compress-write.c: In function 'Compress_cat':
littleendian.h:26:29: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
compress-write.c:877:5: note: in expansion of macro 'FREAD_UINTS'
  877 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-fopen.o `test -f 'fopen.c' || echo './'`fopen.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-datadir.o `test -f 'datadir.c' || echo './'`datadir.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-parserange.o `test -f 'parserange.c' || echo './'`parserange.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-getline.o `test -f 'getline.c' || echo './'`getline.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indexdb_cat-indexdb-cat.o `test -f 'indexdb-cat.c' || echo './'`indexdb-cat.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2    -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-except.o `test -f 'except.c' || echo './'`except.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2    -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-assert.o `test -f 'assert.c' || echo './'`assert.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2    -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-mem.o `test -f 'mem.c' || echo './'`mem.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2    -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-intlist.o `test -f 'intlist.c' || echo './'`intlist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2    -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-list.o `test -f 'list.c' || echo './'`list.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2    -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c
littleendian.c: In function 'Littleendian_write_char':
littleendian.c:14:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint':
littleendian.c:27:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint8':
littleendian.c:45:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint8_as_uint':
littleendian.c:60:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
littleendian.c:66:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2    -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c
bigendian.c: In function 'Bigendian_write_char':
bigendian.c:16:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_uint':
bigendian.c:215:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_fileio_read_uint':
bigendian.c:299:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_uint8':
bigendian.c:367:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_fileio_read_uint8':
bigendian.c:484:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2    -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2    -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-interval.o `test -f 'interval.c' || echo './'`interval.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2    -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2    -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2    -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2    -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-access.o `test -f 'access.c' || echo './'`access.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2    -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2    -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-iit-write-univ.o `test -f 'iit-write-univ.c' || echo './'`iit-write-univ.c
access.c: In function 'copy_memory_from_file':
access.c:532:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:537:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:543:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:548:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:554:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:559:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:565:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:570:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c: In function 'copy_limited_from_file':
access.c:596:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:598:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:604:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:606:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:612:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:614:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:620:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:622:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2    -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-iit-write.o `test -f 'iit-write.c' || echo './'`iit-write.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2    -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-tableint.o `test -f 'tableint.c' || echo './'`tableint.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2    -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-table.o `test -f 'table.c' || echo './'`table.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2    -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-chrom.o `test -f 'chrom.c' || echo './'`chrom.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2    -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2    -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-getline.o `test -f 'getline.c' || echo './'`getline.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2    -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_store-iit_store.o `test -f 'iit_store.c' || echo './'`iit_store.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-except.o `test -f 'except.c' || echo './'`except.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-assert.o `test -f 'assert.c' || echo './'`assert.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-mem.o `test -f 'mem.c' || echo './'`mem.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-intlist.o `test -f 'intlist.c' || echo './'`intlist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-list.o `test -f 'list.c' || echo './'`list.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c
littleendian.c: In function 'Littleendian_write_char':
littleendian.c:14:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint':
littleendian.c:27:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint8':
littleendian.c:45:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint8_as_uint':
littleendian.c:60:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
littleendian.c:66:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_char':
bigendian.c:16:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_uint':
bigendian.c:215:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_fileio_read_uint':
bigendian.c:299:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_uint8':
bigendian.c:367:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_fileio_read_uint8':
bigendian.c:484:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-interval.o `test -f 'interval.c' || echo './'`interval.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-access.o `test -f 'access.c' || echo './'`access.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-filestring.o `test -f 'filestring.c' || echo './'`filestring.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c
access.c: In function 'copy_memory_from_file':
access.c:532:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:537:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:543:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:548:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:554:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:559:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:565:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:570:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c: In function 'copy_limited_from_file':
access.c:596:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:598:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:604:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:606:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:612:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:614:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:620:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:622:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-parserange.o `test -f 'parserange.c' || echo './'`parserange.c
In file included from iit-read-univ.c:12:
iit-read-univ.c: In function 'read_tree_univ':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1068:9: note: in expansion of macro 'FREAD_UINT'
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1070:9: note: in expansion of macro 'FREAD_INT'
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1071:9: note: in expansion of macro 'FREAD_INT'
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1072:9: note: in expansion of macro 'FREAD_INT'
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1073:9: note: in expansion of macro 'FREAD_INT'
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
iit-read-univ.c: In function 'read_intervals_univ':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1121:7: note: in expansion of macro 'FREAD_UINT8'
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1122:7: note: in expansion of macro 'FREAD_UINT8'
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1123:7: note: in expansion of macro 'FREAD_INT'
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1132:7: note: in expansion of macro 'FREAD_UINT'
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1134:7: note: in expansion of macro 'FREAD_UINT'
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1136:7: note: in expansion of macro 'FREAD_INT'
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
iit-read-univ.c: In function 'read_words':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1196:3: note: in expansion of macro 'FREAD_UINT'
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
iit-read-univ.c: In function 'read_annotations':
iit-read-univ.c:1389:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1393:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1397:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1401:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1405:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c: In function 'read_words_debug':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1278:3: note: in expansion of macro 'FREAD_UINT'
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
In file included from iit-read.c:12:
iit-read.c: In function 'IIT_read_divint':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2588:5: note: in expansion of macro 'FREAD_INT'
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'IIT_read':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:3103:5: note: in expansion of macro 'FREAD_INT'
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'read_tree':
iit-read.c:1760:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1761:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1762:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1763:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1764:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'read_intervals':
iit-read.c:1889:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1890:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1892:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1896:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'read_words':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2144:5: note: in expansion of macro 'FREAD_UINT8'
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2150:5: note: in expansion of macro 'FREAD_UINT'
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
iit-read.c: In function 'read_annotations':
iit-read.c:2482:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2486:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2491:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2497:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2502:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2513:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2519:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2524:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2535:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'IIT_debug':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:3524:5: note: in expansion of macro 'FREAD_INT'
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'read_words_debug':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2288:5: note: in expansion of macro 'FREAD_UINT8'
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2293:5: note: in expansion of macro 'FREAD_UINT'
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-getline.o `test -f 'getline.c' || echo './'`getline.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_get-iit_get.o `test -f 'iit_get.c' || echo './'`iit_get.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-except.o `test -f 'except.c' || echo './'`except.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-assert.o `test -f 'assert.c' || echo './'`assert.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-mem.o `test -f 'mem.c' || echo './'`mem.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c
littleendian.c: In function 'Littleendian_write_char':
littleendian.c:14:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint':
littleendian.c:27:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint8':
littleendian.c:45:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint8_as_uint':
littleendian.c:60:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
littleendian.c:66:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-intlist.o `test -f 'intlist.c' || echo './'`intlist.c
bigendian.c: In function 'Bigendian_write_char':
bigendian.c:16:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_uint':
bigendian.c:215:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_fileio_read_uint':
bigendian.c:299:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_uint8':
bigendian.c:367:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_fileio_read_uint8':
bigendian.c:484:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-list.o `test -f 'list.c' || echo './'`list.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-interval.o `test -f 'interval.c' || echo './'`interval.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-access.o `test -f 'access.c' || echo './'`access.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-filestring.o `test -f 'filestring.c' || echo './'`filestring.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-parserange.o `test -f 'parserange.c' || echo './'`parserange.c
access.c: In function 'copy_memory_from_file':
access.c:532:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:537:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:543:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:548:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:554:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:559:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:565:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:570:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c: In function 'copy_limited_from_file':
access.c:596:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:598:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:604:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:606:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:612:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:614:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:620:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:622:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iit_dump-iit_dump.o `test -f 'iit_dump.c' || echo './'`iit_dump.c
In file included from iit-read-univ.c:12:
iit-read-univ.c: In function 'read_tree_univ':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1068:9: note: in expansion of macro 'FREAD_UINT'
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1070:9: note: in expansion of macro 'FREAD_INT'
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1071:9: note: in expansion of macro 'FREAD_INT'
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1072:9: note: in expansion of macro 'FREAD_INT'
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1073:9: note: in expansion of macro 'FREAD_INT'
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
iit-read-univ.c: In function 'read_intervals_univ':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1121:7: note: in expansion of macro 'FREAD_UINT8'
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1122:7: note: in expansion of macro 'FREAD_UINT8'
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1123:7: note: in expansion of macro 'FREAD_INT'
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1132:7: note: in expansion of macro 'FREAD_UINT'
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1134:7: note: in expansion of macro 'FREAD_UINT'
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1136:7: note: in expansion of macro 'FREAD_INT'
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
iit-read-univ.c: In function 'read_words':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1196:3: note: in expansion of macro 'FREAD_UINT'
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
iit-read-univ.c: In function 'read_annotations':
iit-read-univ.c:1389:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1393:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1397:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1401:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1405:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c: In function 'read_words_debug':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1278:3: note: in expansion of macro 'FREAD_UINT'
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
In file included from iit-read.c:12:
iit-read.c: In function 'IIT_read_divint':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2588:5: note: in expansion of macro 'FREAD_INT'
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'IIT_read':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:3103:5: note: in expansion of macro 'FREAD_INT'
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'read_tree':
iit-read.c:1760:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1761:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1762:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1763:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1764:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'read_intervals':
iit-read.c:1889:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1890:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1892:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1896:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'read_words':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2144:5: note: in expansion of macro 'FREAD_UINT8'
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2150:5: note: in expansion of macro 'FREAD_UINT'
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
iit-read.c: In function 'read_annotations':
iit-read.c:2482:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2486:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2491:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2497:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2502:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2513:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2519:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2524:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2535:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'IIT_debug':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:3524:5: note: in expansion of macro 'FREAD_INT'
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'read_words_debug':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2288:5: note: in expansion of macro 'FREAD_UINT8'
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2293:5: note: in expansion of macro 'FREAD_UINT'
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap-gsnap_select.o `test -f 'gsnap_select.c' || echo './'`gsnap_select.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl-gsnapl_select.o `test -f 'gsnapl_select.c' || echo './'`gsnapl_select.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-except.o `test -f 'except.c' || echo './'`except.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-assert.o `test -f 'assert.c' || echo './'`assert.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-mem.o `test -f 'mem.c' || echo './'`mem.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-list.o `test -f 'list.c' || echo './'`list.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c
littleendian.c: In function 'Littleendian_write_char':
littleendian.c:14:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint':
littleendian.c:27:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint8':
littleendian.c:45:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint8_as_uint':
littleendian.c:60:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
littleendian.c:66:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_char':
bigendian.c:16:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_uint':
bigendian.c:215:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_fileio_read_uint':
bigendian.c:299:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_uint8':
bigendian.c:367:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_fileio_read_uint8':
bigendian.c:484:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-interval.o `test -f 'interval.c' || echo './'`interval.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-access.o `test -f 'access.c' || echo './'`access.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c
access.c: In function 'copy_memory_from_file':
access.c:532:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:537:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:543:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:548:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:554:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:559:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:565:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:570:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c: In function 'copy_limited_from_file':
access.c:596:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:598:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:604:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:606:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:612:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:614:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:620:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:622:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from iit-read-univ.c:12:
iit-read-univ.c: In function 'read_tree_univ':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1068:9: note: in expansion of macro 'FREAD_UINT'
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1070:9: note: in expansion of macro 'FREAD_INT'
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1071:9: note: in expansion of macro 'FREAD_INT'
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1072:9: note: in expansion of macro 'FREAD_INT'
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1073:9: note: in expansion of macro 'FREAD_INT'
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
iit-read-univ.c: In function 'read_intervals_univ':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1121:7: note: in expansion of macro 'FREAD_UINT8'
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1122:7: note: in expansion of macro 'FREAD_UINT8'
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1123:7: note: in expansion of macro 'FREAD_INT'
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1132:7: note: in expansion of macro 'FREAD_UINT'
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1134:7: note: in expansion of macro 'FREAD_UINT'
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1136:7: note: in expansion of macro 'FREAD_INT'
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
iit-read-univ.c: In function 'read_words':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1196:3: note: in expansion of macro 'FREAD_UINT'
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
iit-read-univ.c: In function 'read_annotations':
iit-read-univ.c:1389:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1393:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1397:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1401:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1405:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c: In function 'read_words_debug':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1278:3: note: in expansion of macro 'FREAD_UINT'
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-compress.o `test -f 'compress.c' || echo './'`compress.c
In file included from iit-read.c:12:
iit-read.c: In function 'IIT_read_divint':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2588:5: note: in expansion of macro 'FREAD_INT'
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c
iit-read.c: In function 'IIT_read':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:3103:5: note: in expansion of macro 'FREAD_INT'
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'read_tree':
iit-read.c:1760:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1761:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1762:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1763:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1764:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'read_intervals':
iit-read.c:1889:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1890:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1892:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1896:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'read_words':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2144:5: note: in expansion of macro 'FREAD_UINT8'
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2150:5: note: in expansion of macro 'FREAD_UINT'
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
iit-read.c: In function 'read_annotations':
iit-read.c:2482:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2486:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2491:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2497:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2502:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2513:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2519:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2524:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2535:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'IIT_debug':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:3524:5: note: in expansion of macro 'FREAD_INT'
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'read_words_debug':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2288:5: note: in expansion of macro 'FREAD_UINT8'
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2293:5: note: in expansion of macro 'FREAD_UINT'
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
In file included from compress-write.c:21:
compress-write.c: In function 'Compress_cat':
littleendian.h:26:29: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
compress-write.c:877:5: note: in expansion of macro 'FREAD_UINTS'
  877 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-popcount.o `test -f 'popcount.c' || echo './'`popcount.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo './'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c
indexdb.c: In function 'positions_read_multiple':
indexdb.c:1951:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1951 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-chrom.o `test -f 'chrom.c' || echo './'`chrom.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-md5.o `test -f 'md5.c' || echo './'`md5.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-fopen.o `test -f 'fopen.c' || echo './'`fopen.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-genome.o `test -f 'genome.c' || echo './'`genome.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-datadir.o `test -f 'datadir.c' || echo './'`datadir.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-parserange.o `test -f 'parserange.c' || echo './'`parserange.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-getline.o `test -f 'getline.c' || echo './'`getline.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o snpindex-snpindex.o `test -f 'snpindex.c' || echo './'`snpindex.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-except.o `test -f 'except.c' || echo './'`except.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-assert.o `test -f 'assert.c' || echo './'`assert.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-mem.o `test -f 'mem.c' || echo './'`mem.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c
littleendian.c: In function 'Littleendian_write_char':
littleendian.c:14:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint':
littleendian.c:27:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint8':
littleendian.c:45:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint8_as_uint':
littleendian.c:60:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
littleendian.c:66:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_char':
bigendian.c:16:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_uint':
bigendian.c:215:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_fileio_read_uint':
bigendian.c:299:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_uint8':
bigendian.c:367:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_fileio_read_uint8':
bigendian.c:484:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-access.o `test -f 'access.c' || echo './'`access.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-interval.o `test -f 'interval.c' || echo './'`interval.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c
access.c: In function 'copy_memory_from_file':
access.c:532:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:537:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:543:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:548:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:554:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:559:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:565:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:570:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c: In function 'copy_limited_from_file':
access.c:596:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:598:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:604:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:606:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:612:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:614:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:620:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:622:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-compress.o `test -f 'compress.c' || echo './'`compress.c
In file included from iit-read-univ.c:12:
iit-read-univ.c: In function 'read_tree_univ':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1068:9: note: in expansion of macro 'FREAD_UINT'
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1070:9: note: in expansion of macro 'FREAD_INT'
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1071:9: note: in expansion of macro 'FREAD_INT'
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1072:9: note: in expansion of macro 'FREAD_INT'
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1073:9: note: in expansion of macro 'FREAD_INT'
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
iit-read-univ.c: In function 'read_intervals_univ':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1121:7: note: in expansion of macro 'FREAD_UINT8'
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1122:7: note: in expansion of macro 'FREAD_UINT8'
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1123:7: note: in expansion of macro 'FREAD_INT'
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1132:7: note: in expansion of macro 'FREAD_UINT'
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1134:7: note: in expansion of macro 'FREAD_UINT'
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1136:7: note: in expansion of macro 'FREAD_INT'
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
iit-read-univ.c: In function 'read_words':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1196:3: note: in expansion of macro 'FREAD_UINT'
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
iit-read-univ.c: In function 'read_annotations':
iit-read-univ.c:1389:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1393:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1397:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1401:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1405:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c: In function 'read_words_debug':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1278:3: note: in expansion of macro 'FREAD_UINT'
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
In file included from iit-read.c:12:
iit-read.c: In function 'IIT_read_divint':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2588:5: note: in expansion of macro 'FREAD_INT'
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'IIT_read':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:3103:5: note: in expansion of macro 'FREAD_INT'
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'read_tree':
iit-read.c:1760:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1761:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1762:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1763:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1764:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'read_intervals':
iit-read.c:1889:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1890:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1892:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1896:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'read_words':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2144:5: note: in expansion of macro 'FREAD_UINT8'
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2150:5: note: in expansion of macro 'FREAD_UINT'
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
iit-read.c: In function 'read_annotations':
iit-read.c:2482:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2486:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2491:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2497:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2502:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2513:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2519:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2524:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2535:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'IIT_debug':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:3524:5: note: in expansion of macro 'FREAD_INT'
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'read_words_debug':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2288:5: note: in expansion of macro 'FREAD_UINT8'
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2293:5: note: in expansion of macro 'FREAD_UINT'
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c
In file included from compress-write.c:21:
compress-write.c: In function 'Compress_cat':
littleendian.h:26:29: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
compress-write.c:877:5: note: in expansion of macro 'FREAD_UINTS'
  877 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-popcount.o `test -f 'popcount.c' || echo './'`popcount.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo './'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c
indexdb.c: In function 'positions_read_multiple':
indexdb.c:1951:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1951 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-regiondb-write.o `test -f 'regiondb-write.c' || echo './'`regiondb-write.c
In file included from regiondb-write.c:19:
regiondb-write.c: In function 'Region_read':
littleendian.h:22:31: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   22 | #define FREAD_USHORTS(a,n,fp) fread(a,sizeof(UINT2),n,fp)
      |                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~
regiondb-write.c:478:3: note: in expansion of macro 'FREAD_USHORTS'
  478 |   FREAD_USHORTS(buffer->offsets,offsets_size,fp);
      |   ^~~~~~~~~~~~~
littleendian.h:22:31: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   22 | #define FREAD_USHORTS(a,n,fp) fread(a,sizeof(UINT2),n,fp)
      |                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~
regiondb-write.c:479:3: note: in expansion of macro 'FREAD_USHORTS'
  479 |   FREAD_USHORTS(buffer->positions,REGION_LENGTH,fp);
      |   ^~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-cmet.o `test -f 'cmet.c' || echo './'`cmet.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-md5.o `test -f 'md5.c' || echo './'`md5.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-fopen.o `test -f 'fopen.c' || echo './'`fopen.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-genome.o `test -f 'genome.c' || echo './'`genome.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-list.o `test -f 'list.c' || echo './'`list.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-datadir.o `test -f 'datadir.c' || echo './'`datadir.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-parserange.o `test -f 'parserange.c' || echo './'`parserange.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-getline.o `test -f 'getline.c' || echo './'`getline.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cmetindex-cmetindex.o `test -f 'cmetindex.c' || echo './'`cmetindex.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-except.o `test -f 'except.c' || echo './'`except.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-assert.o `test -f 'assert.c' || echo './'`assert.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-mem.o `test -f 'mem.c' || echo './'`mem.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c
littleendian.c: In function 'Littleendian_write_char':
littleendian.c:14:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint':
littleendian.c:27:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint8':
littleendian.c:45:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint8_as_uint':
littleendian.c:60:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
littleendian.c:66:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c
bigendian.c: In function 'Bigendian_write_char':
bigendian.c:16:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_uint':
bigendian.c:215:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_fileio_read_uint':
bigendian.c:299:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_uint8':
bigendian.c:367:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_fileio_read_uint8':
bigendian.c:484:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-access.o `test -f 'access.c' || echo './'`access.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c
access.c: In function 'copy_memory_from_file':
access.c:532:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:537:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:543:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:548:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:554:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:559:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:565:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:570:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c: In function 'copy_limited_from_file':
access.c:596:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:598:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:604:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:606:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:612:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:614:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:620:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:622:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-interval.o `test -f 'interval.c' || echo './'`interval.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c
In file included from iit-read-univ.c:12:
iit-read-univ.c: In function 'read_tree_univ':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1068:9: note: in expansion of macro 'FREAD_UINT'
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1070:9: note: in expansion of macro 'FREAD_INT'
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1071:9: note: in expansion of macro 'FREAD_INT'
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1072:9: note: in expansion of macro 'FREAD_INT'
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1073:9: note: in expansion of macro 'FREAD_INT'
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
iit-read-univ.c: In function 'read_intervals_univ':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1121:7: note: in expansion of macro 'FREAD_UINT8'
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1122:7: note: in expansion of macro 'FREAD_UINT8'
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1123:7: note: in expansion of macro 'FREAD_INT'
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1132:7: note: in expansion of macro 'FREAD_UINT'
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1134:7: note: in expansion of macro 'FREAD_UINT'
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1136:7: note: in expansion of macro 'FREAD_INT'
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
iit-read-univ.c: In function 'read_words':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1196:3: note: in expansion of macro 'FREAD_UINT'
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
iit-read-univ.c: In function 'read_annotations':
iit-read-univ.c:1389:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1393:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1397:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1401:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1405:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c: In function 'read_words_debug':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1278:3: note: in expansion of macro 'FREAD_UINT'
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-compress.o `test -f 'compress.c' || echo './'`compress.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c
In file included from compress-write.c:21:
compress-write.c: In function 'Compress_cat':
littleendian.h:26:29: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
compress-write.c:877:5: note: in expansion of macro 'FREAD_UINTS'
  877 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
In file included from iit-read.c:12:
iit-read.c: In function 'IIT_read_divint':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2588:5: note: in expansion of macro 'FREAD_INT'
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'IIT_read':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:3103:5: note: in expansion of macro 'FREAD_INT'
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'read_tree':
iit-read.c:1760:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1761:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1762:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1763:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1764:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'read_intervals':
iit-read.c:1889:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1890:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1892:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1896:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'read_words':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2144:5: note: in expansion of macro 'FREAD_UINT8'
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2150:5: note: in expansion of macro 'FREAD_UINT'
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
iit-read.c: In function 'read_annotations':
iit-read.c:2482:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2486:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2491:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2497:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2502:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2513:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2519:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2524:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2535:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'IIT_debug':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:3524:5: note: in expansion of macro 'FREAD_INT'
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'read_words_debug':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2288:5: note: in expansion of macro 'FREAD_UINT8'
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2293:5: note: in expansion of macro 'FREAD_UINT'
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-popcount.o `test -f 'popcount.c' || echo './'`popcount.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo './'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c
indexdb.c: In function 'positions_read_multiple':
indexdb.c:1951:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1951 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-regiondb-write.o `test -f 'regiondb-write.c' || echo './'`regiondb-write.c
In file included from regiondb-write.c:19:
regiondb-write.c: In function 'Region_read':
littleendian.h:22:31: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   22 | #define FREAD_USHORTS(a,n,fp) fread(a,sizeof(UINT2),n,fp)
      |                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~
regiondb-write.c:478:3: note: in expansion of macro 'FREAD_USHORTS'
  478 |   FREAD_USHORTS(buffer->offsets,offsets_size,fp);
      |   ^~~~~~~~~~~~~
littleendian.h:22:31: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   22 | #define FREAD_USHORTS(a,n,fp) fread(a,sizeof(UINT2),n,fp)
      |                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~
regiondb-write.c:479:3: note: in expansion of macro 'FREAD_USHORTS'
  479 |   FREAD_USHORTS(buffer->positions,REGION_LENGTH,fp);
      |   ^~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-atoi.o `test -f 'atoi.c' || echo './'`atoi.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-md5.o `test -f 'md5.c' || echo './'`md5.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-fopen.o `test -f 'fopen.c' || echo './'`fopen.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-genome.o `test -f 'genome.c' || echo './'`genome.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-list.o `test -f 'list.c' || echo './'`list.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-datadir.o `test -f 'datadir.c' || echo './'`datadir.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-parserange.o `test -f 'parserange.c' || echo './'`parserange.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-getline.o `test -f 'getline.c' || echo './'`getline.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atoiindex-atoiindex.o `test -f 'atoiindex.c' || echo './'`atoiindex.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-except.o `test -f 'except.c' || echo './'`except.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-assert.o `test -f 'assert.c' || echo './'`assert.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-mem.o `test -f 'mem.c' || echo './'`mem.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c
littleendian.c: In function 'Littleendian_write_char':
littleendian.c:14:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint':
littleendian.c:27:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint8':
littleendian.c:45:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint8_as_uint':
littleendian.c:60:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
littleendian.c:66:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_char':
bigendian.c:16:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_uint':
bigendian.c:215:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_fileio_read_uint':
bigendian.c:299:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_uint8':
bigendian.c:367:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_fileio_read_uint8':
bigendian.c:484:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-access.o `test -f 'access.c' || echo './'`access.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-interval.o `test -f 'interval.c' || echo './'`interval.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c
access.c: In function 'copy_memory_from_file':
access.c:532:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:537:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:543:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:548:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:554:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:559:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:565:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:570:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c: In function 'copy_limited_from_file':
access.c:596:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:598:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:604:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:606:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:612:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:614:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:620:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:622:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-parserange.o `test -f 'parserange.c' || echo './'`parserange.c
In file included from iit-read.c:12:
iit-read.c: In function 'IIT_read_divint':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2588:5: note: in expansion of macro 'FREAD_INT'
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'IIT_read':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:3103:5: note: in expansion of macro 'FREAD_INT'
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'read_tree':
iit-read.c:1760:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1761:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1762:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1763:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1764:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'read_intervals':
iit-read.c:1889:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1890:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1892:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1896:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'read_words':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2144:5: note: in expansion of macro 'FREAD_UINT8'
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2150:5: note: in expansion of macro 'FREAD_UINT'
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
iit-read.c: In function 'read_annotations':
iit-read.c:2482:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2486:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2491:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2497:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2502:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2513:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2519:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2524:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2535:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'IIT_debug':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:3524:5: note: in expansion of macro 'FREAD_INT'
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'read_words_debug':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2288:5: note: in expansion of macro 'FREAD_UINT8'
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2293:5: note: in expansion of macro 'FREAD_UINT'
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-list.o `test -f 'list.c' || echo './'`list.c
In file included from iit-read-univ.c:12:
iit-read-univ.c: In function 'read_tree_univ':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1068:9: note: in expansion of macro 'FREAD_UINT'
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1070:9: note: in expansion of macro 'FREAD_INT'
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1071:9: note: in expansion of macro 'FREAD_INT'
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1072:9: note: in expansion of macro 'FREAD_INT'
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1073:9: note: in expansion of macro 'FREAD_INT'
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
iit-read-univ.c: In function 'read_intervals_univ':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1121:7: note: in expansion of macro 'FREAD_UINT8'
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1122:7: note: in expansion of macro 'FREAD_UINT8'
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1123:7: note: in expansion of macro 'FREAD_INT'
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1132:7: note: in expansion of macro 'FREAD_UINT'
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1134:7: note: in expansion of macro 'FREAD_UINT'
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1136:7: note: in expansion of macro 'FREAD_INT'
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
iit-read-univ.c: In function 'read_words':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1196:3: note: in expansion of macro 'FREAD_UINT'
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
iit-read-univ.c: In function 'read_annotations':
iit-read-univ.c:1389:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1393:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1397:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1401:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1405:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c: In function 'read_words_debug':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1278:3: note: in expansion of macro 'FREAD_UINT'
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-datadir.o `test -f 'datadir.c' || echo './'`datadir.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-getline.o `test -f 'getline.c' || echo './'`getline.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trindex-trindex.o `test -f 'trindex.c' || echo './'`trindex.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-except.o `test -f 'except.c' || echo './'`except.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-assert.o `test -f 'assert.c' || echo './'`assert.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-mem.o `test -f 'mem.c' || echo './'`mem.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-intlist.o `test -f 'intlist.c' || echo './'`intlist.c
littleendian.c: In function 'Littleendian_write_char':
littleendian.c:14:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint':
littleendian.c:27:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint8':
littleendian.c:45:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint8_as_uint':
littleendian.c:60:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
littleendian.c:66:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_char':
bigendian.c:16:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_uint':
bigendian.c:215:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_fileio_read_uint':
bigendian.c:299:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_uint8':
bigendian.c:367:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_fileio_read_uint8':
bigendian.c:484:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-list.o `test -f 'list.c' || echo './'`list.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-access.o `test -f 'access.c' || echo './'`access.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-interval.o `test -f 'interval.c' || echo './'`interval.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-filestring.o `test -f 'filestring.c' || echo './'`filestring.c
access.c: In function 'copy_memory_from_file':
access.c:532:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:537:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:543:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:548:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:554:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:559:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:565:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:570:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c: In function 'copy_limited_from_file':
access.c:596:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:598:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:604:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:606:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:612:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:614:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:620:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:622:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-parserange.o `test -f 'parserange.c' || echo './'`parserange.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-samheader.o `test -f 'samheader.c' || echo './'`samheader.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-samread.o `test -f 'samread.c' || echo './'`samread.c
In file included from iit-read-univ.c:12:
iit-read-univ.c: In function 'read_tree_univ':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1068:9: note: in expansion of macro 'FREAD_UINT'
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1070:9: note: in expansion of macro 'FREAD_INT'
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1071:9: note: in expansion of macro 'FREAD_INT'
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1072:9: note: in expansion of macro 'FREAD_INT'
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1073:9: note: in expansion of macro 'FREAD_INT'
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
iit-read-univ.c: In function 'read_intervals_univ':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1121:7: note: in expansion of macro 'FREAD_UINT8'
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1122:7: note: in expansion of macro 'FREAD_UINT8'
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1123:7: note: in expansion of macro 'FREAD_INT'
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1132:7: note: in expansion of macro 'FREAD_UINT'
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1134:7: note: in expansion of macro 'FREAD_UINT'
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1136:7: note: in expansion of macro 'FREAD_INT'
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
iit-read-univ.c: In function 'read_words':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1196:3: note: in expansion of macro 'FREAD_UINT'
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
iit-read-univ.c: In function 'read_annotations':
iit-read-univ.c:1389:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1393:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1397:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1401:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1405:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c: In function 'read_words_debug':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1278:3: note: in expansion of macro 'FREAD_UINT'
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
In file included from iit-read.c:12:
iit-read.c: In function 'IIT_read_divint':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2588:5: note: in expansion of macro 'FREAD_INT'
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'IIT_read':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:3103:5: note: in expansion of macro 'FREAD_INT'
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'read_tree':
iit-read.c:1760:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1761:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1762:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1763:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1764:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'read_intervals':
iit-read.c:1889:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1890:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1892:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1896:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'read_words':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2144:5: note: in expansion of macro 'FREAD_UINT8'
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2150:5: note: in expansion of macro 'FREAD_UINT'
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
iit-read.c: In function 'read_annotations':
iit-read.c:2482:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2486:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2491:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2497:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2502:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2513:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2519:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2524:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2535:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'IIT_debug':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:3524:5: note: in expansion of macro 'FREAD_INT'
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'read_words_debug':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2288:5: note: in expansion of macro 'FREAD_UINT8'
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2293:5: note: in expansion of macro 'FREAD_UINT'
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
samheader.c: In function 'SAM_header_change_HD_tosorted':
samheader.c:231:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  231 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
samheader.c:236:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  236 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-getline.o `test -f 'getline.c' || echo './'`getline.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-datadir.o `test -f 'datadir.c' || echo './'`datadir.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sam_sort-sam_sort.o `test -f 'sam_sort.c' || echo './'`sam_sort.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-except.o `test -f 'except.c' || echo './'`except.c
sam_sort.c: In function 'process_no_dedup':
sam_sort.c:1393:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 1393 |       fgets(line,linelen+1,fp_sam); /* Will read linelen characters with '\n' and then '\0' */
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
sam_sort.c: In function 'print_results':
sam_sort.c:1009:15: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 1009 |               fgets(line,linelen+1,fp_sam);
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
sam_sort.c:1026:15: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 1026 |               fgets(line,linelen+1,fp_sam);
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
sam_sort.c: In function 'read_sam_files_for_hashseq':
sam_sort.c:1602:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 1602 |       fgets(line,linelen+1,fp_sam); /* Will read linelen characters with '\n' and then '\0' */
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-assert.o `test -f 'assert.c' || echo './'`assert.c
samread.c: In function 'Samread_flag_duplicate':
samread.c:1076:29: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
 1076 |   sprintf(newflag_string,"%u",flag | DUPLICATE_READ);
      |                             ^
In file included from /usr/include/stdio.h:906,
                 from samread.c:6:
In function 'sprintf',
    inlined from 'Samread_flag_duplicate' at samread.c:1076:3:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 5 and 11 bytes into a destination of size 10
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-mem.o `test -f 'mem.c' || echo './'`mem.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-intlist.o `test -f 'intlist.c' || echo './'`intlist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-list.o `test -f 'list.c' || echo './'`list.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c
littleendian.c: In function 'Littleendian_write_char':
littleendian.c:14:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint':
littleendian.c:27:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint8':
littleendian.c:45:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint8_as_uint':
littleendian.c:60:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
littleendian.c:66:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-interval.o `test -f 'interval.c' || echo './'`interval.c
bigendian.c: In function 'Bigendian_write_char':
bigendian.c:16:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_uint':
bigendian.c:215:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_fileio_read_uint':
bigendian.c:299:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c
bigendian.c: In function 'Bigendian_write_uint8':
bigendian.c:367:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_fileio_read_uint8':
bigendian.c:484:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-access.o `test -f 'access.c' || echo './'`access.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-filestring.o `test -f 'filestring.c' || echo './'`filestring.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c
access.c: In function 'copy_memory_from_file':
access.c:532:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:537:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:543:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:548:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:554:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:559:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:565:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:570:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c: In function 'copy_limited_from_file':
access.c:596:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:598:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:604:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:606:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:612:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:614:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:620:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:622:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-md5.o `test -f 'md5.c' || echo './'`md5.c
In file included from iit-read-univ.c:12:
iit-read-univ.c: In function 'read_tree_univ':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1068:9: note: in expansion of macro 'FREAD_UINT'
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1070:9: note: in expansion of macro 'FREAD_INT'
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1071:9: note: in expansion of macro 'FREAD_INT'
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1072:9: note: in expansion of macro 'FREAD_INT'
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1073:9: note: in expansion of macro 'FREAD_INT'
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
iit-read-univ.c: In function 'read_intervals_univ':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1121:7: note: in expansion of macro 'FREAD_UINT8'
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1122:7: note: in expansion of macro 'FREAD_UINT8'
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1123:7: note: in expansion of macro 'FREAD_INT'
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1132:7: note: in expansion of macro 'FREAD_UINT'
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1134:7: note: in expansion of macro 'FREAD_UINT'
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1136:7: note: in expansion of macro 'FREAD_INT'
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
iit-read-univ.c: In function 'read_words':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1196:3: note: in expansion of macro 'FREAD_UINT'
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
iit-read-univ.c: In function 'read_annotations':
iit-read-univ.c:1389:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1393:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1397:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1401:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1405:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c: In function 'read_words_debug':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1278:3: note: in expansion of macro 'FREAD_UINT'
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
In file included from iit-read.c:12:
iit-read.c: In function 'IIT_read_divint':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2588:5: note: in expansion of macro 'FREAD_INT'
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'IIT_read':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:3103:5: note: in expansion of macro 'FREAD_INT'
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'read_tree':
iit-read.c:1760:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1761:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1762:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1763:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1764:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'read_intervals':
iit-read.c:1889:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1890:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1892:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1896:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'read_words':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2144:5: note: in expansion of macro 'FREAD_UINT8'
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2150:5: note: in expansion of macro 'FREAD_UINT'
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
iit-read.c: In function 'read_annotations':
iit-read.c:2482:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2486:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2491:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2497:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2502:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2513:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2519:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2524:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2535:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'IIT_debug':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:3524:5: note: in expansion of macro 'FREAD_INT'
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'read_words_debug':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2288:5: note: in expansion of macro 'FREAD_UINT8'
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2293:5: note: in expansion of macro 'FREAD_UINT'
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-fopen.o `test -f 'fopen.c' || echo './'`fopen.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-sequence.o `test -f 'sequence.c' || echo './'`sequence.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-reader.o `test -f 'reader.c' || echo './'`reader.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-compress.o `test -f 'compress.c' || echo './'`compress.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c
In file included from compress-write.c:21:
compress-write.c: In function 'Compress_cat':
littleendian.h:26:29: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
compress-write.c:877:5: note: in expansion of macro 'FREAD_UINTS'
  877 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-genome.o `test -f 'genome.c' || echo './'`genome.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-popcount.o `test -f 'popcount.c' || echo './'`popcount.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo './'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-genome_canonical.o `test -f 'genome_canonical.c' || echo './'`genome_canonical.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c
indexdb.c: In function 'positions_read_multiple':
indexdb.c:1951:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1951 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-oligo.o `test -f 'oligo.c' || echo './'`oligo.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-block.o `test -f 'block.c' || echo './'`block.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-chrom.o `test -f 'chrom.c' || echo './'`chrom.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-uinttable_rh.o `test -f 'uinttable_rh.c' || echo './'`uinttable_rh.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-gregion.o `test -f 'gregion.c' || echo './'`gregion.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-match.o `test -f 'match.c' || echo './'`match.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-matchpool.o `test -f 'matchpool.c' || echo './'`matchpool.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-diagnostic.o `test -f 'diagnostic.c' || echo './'`diagnostic.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-stage1.o `test -f 'stage1.c' || echo './'`stage1.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-diag.o `test -f 'diag.c' || echo './'`diag.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-diagpool.o `test -f 'diagpool.c' || echo './'`diagpool.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-cmet.o `test -f 'cmet.c' || echo './'`cmet.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-atoi.o `test -f 'atoi.c' || echo './'`atoi.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo './'`oligoindex_hr.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-intron.o `test -f 'intron.c' || echo './'`intron.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-maxent.o `test -f 'maxent.c' || echo './'`maxent.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-pair.o `test -f 'pair.c' || echo './'`pair.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-pairpool.o `test -f 'pairpool.c' || echo './'`pairpool.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-cellpool.o `test -f 'cellpool.c' || echo './'`cellpool.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-stage2.o `test -f 'stage2.c' || echo './'`stage2.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-smooth.o `test -f 'smooth.c' || echo './'`smooth.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-splicestringpool.o `test -f 'splicestringpool.c' || echo './'`splicestringpool.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-splicetrie_build.o `test -f 'splicetrie_build.c' || echo './'`splicetrie_build.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-splicetrie.o `test -f 'splicetrie.c' || echo './'`splicetrie.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-boyer-moore.o `test -f 'boyer-moore.c' || echo './'`boyer-moore.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-dynprog.o `test -f 'dynprog.c' || echo './'`dynprog.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-dynprog_simd.o `test -f 'dynprog_simd.c' || echo './'`dynprog_simd.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-dynprog_single.o `test -f 'dynprog_single.c' || echo './'`dynprog_single.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-dynprog_genome.o `test -f 'dynprog_genome.c' || echo './'`dynprog_genome.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo './'`dynprog_cdna.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-dynprog_end.o `test -f 'dynprog_end.c' || echo './'`dynprog_end.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-translation.o `test -f 'translation.c' || echo './'`translation.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-pbinom.o `test -f 'pbinom.c' || echo './'`pbinom.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-changepoint.o `test -f 'changepoint.c' || echo './'`changepoint.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-stage3.o `test -f 'stage3.c' || echo './'`stage3.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-request.o `test -f 'request.c' || echo './'`request.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-result.o `test -f 'result.c' || echo './'`result.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-output.o `test -f 'output.c' || echo './'`output.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-samheader.o `test -f 'samheader.c' || echo './'`samheader.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo './'`printbuffer.c
samheader.c: In function 'SAM_header_change_HD_tosorted':
samheader.c:231:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  231 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
samheader.c:236:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  236 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-chimera.o `test -f 'chimera.c' || echo './'`chimera.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-datadir.o `test -f 'datadir.c' || echo './'`datadir.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-parserange.o `test -f 'parserange.c' || echo './'`parserange.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-getline.o `test -f 'getline.c' || echo './'`getline.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmap_nosimd-gmap.o `test -f 'gmap.c' || echo './'`gmap.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-except.o `test -f 'except.c' || echo './'`except.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-assert.o `test -f 'assert.c' || echo './'`assert.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-mem.o `test -f 'mem.c' || echo './'`mem.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-intlist.o `test -f 'intlist.c' || echo './'`intlist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-list.o `test -f 'list.c' || echo './'`list.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c
littleendian.c: In function 'Littleendian_write_char':
littleendian.c:14:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint':
littleendian.c:27:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint8':
littleendian.c:45:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint8_as_uint':
littleendian.c:60:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
littleendian.c:66:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c
bigendian.c: In function 'Bigendian_write_char':
bigendian.c:16:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_uint':
bigendian.c:215:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_fileio_read_uint':
bigendian.c:299:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_uint8':
bigendian.c:367:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_fileio_read_uint8':
bigendian.c:484:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-interval.o `test -f 'interval.c' || echo './'`interval.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-access.o `test -f 'access.c' || echo './'`access.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-filestring.o `test -f 'filestring.c' || echo './'`filestring.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-md5.o `test -f 'md5.c' || echo './'`md5.c
access.c: In function 'copy_memory_from_file':
access.c:532:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:537:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:543:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:548:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:554:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:559:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:565:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:570:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c: In function 'copy_limited_from_file':
access.c:596:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:598:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:604:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:606:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:612:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:614:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:620:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:622:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c
In file included from iit-read-univ.c:12:
iit-read-univ.c: In function 'read_tree_univ':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1068:9: note: in expansion of macro 'FREAD_UINT'
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1070:9: note: in expansion of macro 'FREAD_INT'
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1071:9: note: in expansion of macro 'FREAD_INT'
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1072:9: note: in expansion of macro 'FREAD_INT'
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1073:9: note: in expansion of macro 'FREAD_INT'
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
iit-read-univ.c: In function 'read_intervals_univ':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1121:7: note: in expansion of macro 'FREAD_UINT8'
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1122:7: note: in expansion of macro 'FREAD_UINT8'
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1123:7: note: in expansion of macro 'FREAD_INT'
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1132:7: note: in expansion of macro 'FREAD_UINT'
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1134:7: note: in expansion of macro 'FREAD_UINT'
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1136:7: note: in expansion of macro 'FREAD_INT'
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
iit-read-univ.c: In function 'read_words':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1196:3: note: in expansion of macro 'FREAD_UINT'
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
iit-read-univ.c: In function 'read_annotations':
iit-read-univ.c:1389:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1393:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1397:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1401:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1405:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c: In function 'read_words_debug':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1278:3: note: in expansion of macro 'FREAD_UINT'
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-fopen.o `test -f 'fopen.c' || echo './'`fopen.c
In file included from iit-read.c:12:
iit-read.c: In function 'IIT_read_divint':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2588:5: note: in expansion of macro 'FREAD_INT'
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'IIT_read':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:3103:5: note: in expansion of macro 'FREAD_INT'
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'read_tree':
iit-read.c:1760:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1761:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1762:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1763:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1764:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'read_intervals':
iit-read.c:1889:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1890:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1892:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1896:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'read_words':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2144:5: note: in expansion of macro 'FREAD_UINT8'
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2150:5: note: in expansion of macro 'FREAD_UINT'
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
iit-read.c: In function 'read_annotations':
iit-read.c:2482:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2486:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2491:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2497:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2502:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2513:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2519:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2524:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2535:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'IIT_debug':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:3524:5: note: in expansion of macro 'FREAD_INT'
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'read_words_debug':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2288:5: note: in expansion of macro 'FREAD_UINT8'
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2293:5: note: in expansion of macro 'FREAD_UINT'
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-sequence.o `test -f 'sequence.c' || echo './'`sequence.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-reader.o `test -f 'reader.c' || echo './'`reader.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-compress.o `test -f 'compress.c' || echo './'`compress.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c
In file included from compress-write.c:21:
compress-write.c: In function 'Compress_cat':
littleendian.h:26:29: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
compress-write.c:877:5: note: in expansion of macro 'FREAD_UINTS'
  877 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-genome.o `test -f 'genome.c' || echo './'`genome.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-popcount.o `test -f 'popcount.c' || echo './'`popcount.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo './'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-genome_canonical.o `test -f 'genome_canonical.c' || echo './'`genome_canonical.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c
indexdb.c: In function 'positions_read_multiple_large':
indexdb.c:1895:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1895 |     read(positions_high_fd,buffer,1);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
indexdb.c:1899:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1899 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-oligo.o `test -f 'oligo.c' || echo './'`oligo.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-block.o `test -f 'block.c' || echo './'`block.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-chrom.o `test -f 'chrom.c' || echo './'`chrom.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-uinttable_rh.o `test -f 'uinttable_rh.c' || echo './'`uinttable_rh.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-gregion.o `test -f 'gregion.c' || echo './'`gregion.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-match.o `test -f 'match.c' || echo './'`match.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-matchpool.o `test -f 'matchpool.c' || echo './'`matchpool.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-diagnostic.o `test -f 'diagnostic.c' || echo './'`diagnostic.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-stage1.o `test -f 'stage1.c' || echo './'`stage1.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-diag.o `test -f 'diag.c' || echo './'`diag.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-diagpool.o `test -f 'diagpool.c' || echo './'`diagpool.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-cmet.o `test -f 'cmet.c' || echo './'`cmet.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-atoi.o `test -f 'atoi.c' || echo './'`atoi.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo './'`oligoindex_hr.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-intron.o `test -f 'intron.c' || echo './'`intron.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-maxent.o `test -f 'maxent.c' || echo './'`maxent.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-pair.o `test -f 'pair.c' || echo './'`pair.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-pairpool.o `test -f 'pairpool.c' || echo './'`pairpool.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-cellpool.o `test -f 'cellpool.c' || echo './'`cellpool.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-stage2.o `test -f 'stage2.c' || echo './'`stage2.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-smooth.o `test -f 'smooth.c' || echo './'`smooth.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-splicestringpool.o `test -f 'splicestringpool.c' || echo './'`splicestringpool.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-splicetrie_build.o `test -f 'splicetrie_build.c' || echo './'`splicetrie_build.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-splicetrie.o `test -f 'splicetrie.c' || echo './'`splicetrie.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-boyer-moore.o `test -f 'boyer-moore.c' || echo './'`boyer-moore.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-dynprog.o `test -f 'dynprog.c' || echo './'`dynprog.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-dynprog_simd.o `test -f 'dynprog_simd.c' || echo './'`dynprog_simd.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-dynprog_single.o `test -f 'dynprog_single.c' || echo './'`dynprog_single.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-dynprog_genome.o `test -f 'dynprog_genome.c' || echo './'`dynprog_genome.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo './'`dynprog_cdna.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-dynprog_end.o `test -f 'dynprog_end.c' || echo './'`dynprog_end.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-translation.o `test -f 'translation.c' || echo './'`translation.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-pbinom.o `test -f 'pbinom.c' || echo './'`pbinom.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-changepoint.o `test -f 'changepoint.c' || echo './'`changepoint.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-stage3.o `test -f 'stage3.c' || echo './'`stage3.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-request.o `test -f 'request.c' || echo './'`request.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-result.o `test -f 'result.c' || echo './'`result.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-output.o `test -f 'output.c' || echo './'`output.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-samheader.o `test -f 'samheader.c' || echo './'`samheader.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo './'`printbuffer.c
samheader.c: In function 'SAM_header_change_HD_tosorted':
samheader.c:231:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  231 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
samheader.c:236:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  236 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-chimera.o `test -f 'chimera.c' || echo './'`chimera.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-datadir.o `test -f 'datadir.c' || echo './'`datadir.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-parserange.o `test -f 'parserange.c' || echo './'`parserange.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-getline.o `test -f 'getline.c' || echo './'`getline.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gmapl_nosimd-gmap.o `test -f 'gmap.c' || echo './'`gmap.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-except.o `test -f 'except.c' || echo './'`except.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-assert.o `test -f 'assert.c' || echo './'`assert.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-mem.o `test -f 'mem.c' || echo './'`mem.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-intlist.o `test -f 'intlist.c' || echo './'`intlist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-list.o `test -f 'list.c' || echo './'`list.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c
littleendian.c: In function 'Littleendian_write_char':
littleendian.c:14:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint':
littleendian.c:27:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint8':
littleendian.c:45:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint8_as_uint':
littleendian.c:60:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
littleendian.c:66:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c
bigendian.c: In function 'Bigendian_write_char':
bigendian.c:16:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_uint':
bigendian.c:215:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_fileio_read_uint':
bigendian.c:299:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_uint8':
bigendian.c:367:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_fileio_read_uint8':
bigendian.c:484:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-interval.o `test -f 'interval.c' || echo './'`interval.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-access.o `test -f 'access.c' || echo './'`access.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-filestring.o `test -f 'filestring.c' || echo './'`filestring.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c
access.c: In function 'copy_memory_from_file':
access.c:532:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:537:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:543:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:548:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:554:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:559:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:565:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:570:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c: In function 'copy_limited_from_file':
access.c:596:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:598:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:604:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:606:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:612:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:614:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:620:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:622:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-reader.o `test -f 'reader.c' || echo './'`reader.c
In file included from iit-read-univ.c:12:
iit-read-univ.c: In function 'read_tree_univ':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1068:9: note: in expansion of macro 'FREAD_UINT'
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1070:9: note: in expansion of macro 'FREAD_INT'
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1071:9: note: in expansion of macro 'FREAD_INT'
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1072:9: note: in expansion of macro 'FREAD_INT'
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1073:9: note: in expansion of macro 'FREAD_INT'
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c
iit-read-univ.c: In function 'read_intervals_univ':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1121:7: note: in expansion of macro 'FREAD_UINT8'
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1122:7: note: in expansion of macro 'FREAD_UINT8'
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1123:7: note: in expansion of macro 'FREAD_INT'
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1132:7: note: in expansion of macro 'FREAD_UINT'
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1134:7: note: in expansion of macro 'FREAD_UINT'
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1136:7: note: in expansion of macro 'FREAD_INT'
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
iit-read-univ.c: In function 'read_words':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1196:3: note: in expansion of macro 'FREAD_UINT'
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
iit-read-univ.c: In function 'read_annotations':
iit-read-univ.c:1389:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1393:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1397:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1401:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1405:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c: In function 'read_words_debug':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1278:3: note: in expansion of macro 'FREAD_UINT'
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-compress.o `test -f 'compress.c' || echo './'`compress.c
In file included from iit-read.c:12:
iit-read.c: In function 'IIT_read_divint':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2588:5: note: in expansion of macro 'FREAD_INT'
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'IIT_read':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:3103:5: note: in expansion of macro 'FREAD_INT'
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'read_tree':
iit-read.c:1760:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1761:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1762:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1763:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1764:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'read_intervals':
iit-read.c:1889:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1890:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1892:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1896:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'read_words':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2144:5: note: in expansion of macro 'FREAD_UINT8'
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2150:5: note: in expansion of macro 'FREAD_UINT'
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
iit-read.c: In function 'read_annotations':
iit-read.c:2482:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2486:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2491:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2497:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2502:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2513:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2519:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2524:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2535:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'IIT_debug':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:3524:5: note: in expansion of macro 'FREAD_INT'
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'read_words_debug':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2288:5: note: in expansion of macro 'FREAD_UINT8'
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2293:5: note: in expansion of macro 'FREAD_UINT'
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-genome.o `test -f 'genome.c' || echo './'`genome.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-transcriptome.o `test -f 'transcriptome.c' || echo './'`transcriptome.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-popcount.o `test -f 'popcount.c' || echo './'`popcount.c
In file included from transcriptome.c:28:
transcriptome.c: In function 'Transcriptome_new':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
transcriptome.c:132:5: note: in expansion of macro 'FREAD_INT'
  132 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo './'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-mergeinfo.o `test -f 'mergeinfo.c' || echo './'`mergeinfo.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-merge-uint4.o `test -f 'merge-uint4.c' || echo './'`merge-uint4.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo './'`merge-diagonals-simd-uint4.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-regiondb.o `test -f 'regiondb.c' || echo './'`regiondb.c
indexdb.c: In function 'positions_read_multiple':
indexdb.c:1951:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1951 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-oligo.o `test -f 'oligo.c' || echo './'`oligo.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-mdprint.o `test -f 'mdprint.c' || echo './'`mdprint.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-cigar.o `test -f 'cigar.c' || echo './'`cigar.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-samprint.o `test -f 'samprint.c' || echo './'`samprint.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-mapq.o `test -f 'mapq.c' || echo './'`mapq.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-fopen.o `test -f 'fopen.c' || echo './'`fopen.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-shortread.o `test -f 'shortread.c' || echo './'`shortread.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-substring.o `test -f 'substring.c' || echo './'`substring.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-junction.o `test -f 'junction.c' || echo './'`junction.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-exon.o `test -f 'exon.c' || echo './'`exon.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-bitvector.o `test -f 'bitvector.c' || echo './'`bitvector.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-transcript.o `test -f 'transcript.c' || echo './'`transcript.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-method.o `test -f 'method.c' || echo './'`method.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-stage3hr.o `test -f 'stage3hr.c' || echo './'`stage3hr.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-ladder.o `test -f 'ladder.c' || echo './'`ladder.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-concordance.o `test -f 'concordance.c' || echo './'`concordance.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-simplepair.o `test -f 'simplepair.c' || echo './'`simplepair.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-maxent.o `test -f 'maxent.c' || echo './'`maxent.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-intlistpool.o `test -f 'intlistpool.c' || echo './'`intlistpool.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-uintlistpool.o `test -f 'uintlistpool.c' || echo './'`uintlistpool.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-listpool.o `test -f 'listpool.c' || echo './'`listpool.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-hitlistpool.o `test -f 'hitlistpool.c' || echo './'`hitlistpool.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-intron.o `test -f 'intron.c' || echo './'`intron.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-knownsplicing.o `test -f 'knownsplicing.c' || echo './'`knownsplicing.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-splice.o `test -f 'splice.c' || echo './'`splice.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-indel.o `test -f 'indel.c' || echo './'`indel.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-univdiag.o `test -f 'univdiag.c' || echo './'`univdiag.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-univdiagpool.o `test -f 'univdiagpool.c' || echo './'`univdiagpool.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-sedgesort.o `test -f 'sedgesort.c' || echo './'`sedgesort.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-intersect.o `test -f 'intersect.c' || echo './'`intersect.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-kmer-search.o `test -f 'kmer-search.c' || echo './'`kmer-search.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-path-solve.o `test -f 'path-solve.c' || echo './'`path-solve.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-extension-search.o `test -f 'extension-search.c' || echo './'`extension-search.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-segment-search.o `test -f 'segment-search.c' || echo './'`segment-search.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-terminal.o `test -f 'terminal.c' || echo './'`terminal.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-distant-rna.o `test -f 'distant-rna.c' || echo './'`distant-rna.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-distant-dna.o `test -f 'distant-dna.c' || echo './'`distant-dna.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-uint8table_rh.o `test -f 'uint8table_rh.c' || echo './'`uint8table_rh.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-uinttable_rh.o `test -f 'uinttable_rh.c' || echo './'`uinttable_rh.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-stage1hr.o `test -f 'stage1hr.c' || echo './'`stage1hr.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-tableuint.o `test -f 'tableuint.c' || echo './'`tableuint.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-single-cell.o `test -f 'single-cell.c' || echo './'`single-cell.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-request.o `test -f 'request.c' || echo './'`request.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-resulthr.o `test -f 'resulthr.c' || echo './'`resulthr.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-output.o `test -f 'output.c' || echo './'`output.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-samheader.o `test -f 'samheader.c' || echo './'`samheader.c
samheader.c: In function 'SAM_header_change_HD_tosorted':
samheader.c:231:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  231 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
samheader.c:236:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  236 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo './'`printbuffer.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-datadir.o `test -f 'datadir.c' || echo './'`datadir.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-parserange.o `test -f 'parserange.c' || echo './'`parserange.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-getline.o `test -f 'getline.c' || echo './'`getline.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnap_nosimd-gsnap.o `test -f 'gsnap.c' || echo './'`gsnap.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-except.o `test -f 'except.c' || echo './'`except.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-assert.o `test -f 'assert.c' || echo './'`assert.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-mem.o `test -f 'mem.c' || echo './'`mem.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-intlist.o `test -f 'intlist.c' || echo './'`intlist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-list.o `test -f 'list.c' || echo './'`list.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c
littleendian.c: In function 'Littleendian_write_char':
littleendian.c:14:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint':
littleendian.c:27:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint8':
littleendian.c:45:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
littleendian.c: In function 'Littleendian_write_uint8_as_uint':
littleendian.c:60:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
littleendian.c:66:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c
bigendian.c: In function 'Bigendian_write_char':
bigendian.c:16:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_uint':
bigendian.c:215:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_fileio_read_uint':
bigendian.c:299:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_write_uint8':
bigendian.c:367:3: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
bigendian.c: In function 'Bigendian_fileio_read_uint8':
bigendian.c:484:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-interval.o `test -f 'interval.c' || echo './'`interval.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-access.o `test -f 'access.c' || echo './'`access.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-filestring.o `test -f 'filestring.c' || echo './'`filestring.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c
access.c: In function 'copy_memory_from_file':
access.c:532:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:537:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:543:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:548:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:554:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:559:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:565:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:570:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c
access.c: In function 'copy_limited_from_file':
access.c:596:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:598:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:604:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:606:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:612:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:614:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:620:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
access.c:622:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from iit-read-univ.c:12:
iit-read-univ.c: In function 'read_tree_univ':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1068:9: note: in expansion of macro 'FREAD_UINT'
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1070:9: note: in expansion of macro 'FREAD_INT'
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1071:9: note: in expansion of macro 'FREAD_INT'
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1072:9: note: in expansion of macro 'FREAD_INT'
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1073:9: note: in expansion of macro 'FREAD_INT'
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
iit-read-univ.c: In function 'read_intervals_univ':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1121:7: note: in expansion of macro 'FREAD_UINT8'
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1122:7: note: in expansion of macro 'FREAD_UINT8'
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1123:7: note: in expansion of macro 'FREAD_INT'
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1132:7: note: in expansion of macro 'FREAD_UINT'
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1134:7: note: in expansion of macro 'FREAD_UINT'
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1136:7: note: in expansion of macro 'FREAD_INT'
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
iit-read-univ.c: In function 'read_words':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1196:3: note: in expansion of macro 'FREAD_UINT'
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
iit-read-univ.c: In function 'read_annotations':
iit-read-univ.c:1389:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1393:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1397:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1401:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1405:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c: In function 'read_words_debug':
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read-univ.c:1278:3: note: in expansion of macro 'FREAD_UINT'
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-reader.o `test -f 'reader.c' || echo './'`reader.c
In file included from iit-read.c:12:
iit-read.c: In function 'IIT_read_divint':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2588:5: note: in expansion of macro 'FREAD_INT'
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'IIT_read':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:3103:5: note: in expansion of macro 'FREAD_INT'
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'read_tree':
iit-read.c:1760:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1761:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1762:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1763:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1764:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'read_intervals':
iit-read.c:1889:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1890:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1892:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:1896:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'read_words':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2144:5: note: in expansion of macro 'FREAD_UINT8'
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2150:5: note: in expansion of macro 'FREAD_UINT'
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
iit-read.c: In function 'read_annotations':
iit-read.c:2482:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2486:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2491:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2497:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2502:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2513:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2519:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2524:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2535:3: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c: In function 'IIT_debug':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:3524:5: note: in expansion of macro 'FREAD_INT'
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
iit-read.c: In function 'read_words_debug':
littleendian.h:29:27: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2288:5: note: in expansion of macro 'FREAD_UINT8'
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
littleendian.h:24:26: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
iit-read.c:2293:5: note: in expansion of macro 'FREAD_UINT'
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-compress.o `test -f 'compress.c' || echo './'`compress.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-genome.o `test -f 'genome.c' || echo './'`genome.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-transcriptome.o `test -f 'transcriptome.c' || echo './'`transcriptome.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-popcount.o `test -f 'popcount.c' || echo './'`popcount.c
In file included from transcriptome.c:28:
transcriptome.c: In function 'Transcriptome_new':
littleendian.h:23:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
transcriptome.c:132:5: note: in expansion of macro 'FREAD_INT'
  132 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo './'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-mergeinfo.o `test -f 'mergeinfo.c' || echo './'`mergeinfo.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-merge-diagonals-heap.o `test -f 'merge-diagonals-heap.c' || echo './'`merge-diagonals-heap.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-merge-uint8.o `test -f 'merge-uint8.c' || echo './'`merge-uint8.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-merge-diagonals-simd-uint8.o `test -f 'merge-diagonals-simd-uint8.c' || echo './'`merge-diagonals-simd-uint8.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-merge-uint4.o `test -f 'merge-uint4.c' || echo './'`merge-uint4.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo './'`merge-diagonals-simd-uint4.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c
indexdb.c: In function 'positions_read_multiple_large':
indexdb.c:1895:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1895 |     read(positions_high_fd,buffer,1);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
indexdb.c:1899:5: warning: ignoring return value of 'read' declared with attribute 'warn_unused_result' [-Wunused-result]
 1899 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-regiondb.o `test -f 'regiondb.c' || echo './'`regiondb.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-oligo.o `test -f 'oligo.c' || echo './'`oligo.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-mdprint.o `test -f 'mdprint.c' || echo './'`mdprint.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-cigar.o `test -f 'cigar.c' || echo './'`cigar.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-samprint.o `test -f 'samprint.c' || echo './'`samprint.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-mapq.o `test -f 'mapq.c' || echo './'`mapq.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-fopen.o `test -f 'fopen.c' || echo './'`fopen.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-shortread.o `test -f 'shortread.c' || echo './'`shortread.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-substring.o `test -f 'substring.c' || echo './'`substring.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-junction.o `test -f 'junction.c' || echo './'`junction.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-exon.o `test -f 'exon.c' || echo './'`exon.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-bitvector.o `test -f 'bitvector.c' || echo './'`bitvector.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-transcript.o `test -f 'transcript.c' || echo './'`transcript.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-method.o `test -f 'method.c' || echo './'`method.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-stage3hr.o `test -f 'stage3hr.c' || echo './'`stage3hr.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-ladder.o `test -f 'ladder.c' || echo './'`ladder.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-concordance.o `test -f 'concordance.c' || echo './'`concordance.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-simplepair.o `test -f 'simplepair.c' || echo './'`simplepair.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-maxent.o `test -f 'maxent.c' || echo './'`maxent.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-intlistpool.o `test -f 'intlistpool.c' || echo './'`intlistpool.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-uint8listpool.o `test -f 'uint8listpool.c' || echo './'`uint8listpool.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-listpool.o `test -f 'listpool.c' || echo './'`listpool.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-hitlistpool.o `test -f 'hitlistpool.c' || echo './'`hitlistpool.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-intron.o `test -f 'intron.c' || echo './'`intron.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-knownsplicing.o `test -f 'knownsplicing.c' || echo './'`knownsplicing.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-splice.o `test -f 'splice.c' || echo './'`splice.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-indel.o `test -f 'indel.c' || echo './'`indel.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-univdiag.o `test -f 'univdiag.c' || echo './'`univdiag.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-univdiagpool.o `test -f 'univdiagpool.c' || echo './'`univdiagpool.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-sedgesort.o `test -f 'sedgesort.c' || echo './'`sedgesort.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-intersect.o `test -f 'intersect.c' || echo './'`intersect.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-intersect-large.o `test -f 'intersect-large.c' || echo './'`intersect-large.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-kmer-search.o `test -f 'kmer-search.c' || echo './'`kmer-search.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-path-solve.o `test -f 'path-solve.c' || echo './'`path-solve.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-extension-search.o `test -f 'extension-search.c' || echo './'`extension-search.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-segment-search.o `test -f 'segment-search.c' || echo './'`segment-search.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-terminal.o `test -f 'terminal.c' || echo './'`terminal.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-distant-rna.o `test -f 'distant-rna.c' || echo './'`distant-rna.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-distant-dna.o `test -f 'distant-dna.c' || echo './'`distant-dna.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-uint8table_rh.o `test -f 'uint8table_rh.c' || echo './'`uint8table_rh.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-stage1hr.o `test -f 'stage1hr.c' || echo './'`stage1hr.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-tableuint.o `test -f 'tableuint.c' || echo './'`tableuint.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-single-cell.o `test -f 'single-cell.c' || echo './'`single-cell.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-request.o `test -f 'request.c' || echo './'`request.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-resulthr.o `test -f 'resulthr.c' || echo './'`resulthr.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-output.o `test -f 'output.c' || echo './'`output.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-samheader.o `test -f 'samheader.c' || echo './'`samheader.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo './'`printbuffer.c
samheader.c: In function 'SAM_header_change_HD_tosorted':
samheader.c:231:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  231 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
samheader.c:236:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
  236 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-datadir.o `test -f 'datadir.c' || echo './'`datadir.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-parserange.o `test -f 'parserange.c' || echo './'`parserange.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-getline.o `test -f 'getline.c' || echo './'`getline.c
gcc -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsnapl_nosimd-gsnap.o `test -f 'gsnap.c' || echo './'`gsnap.c
gcc  -DMAIN=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -Wl,-z,relro -Wl,-z,now -o cpuid cpuid-cpuid.o  -lm 
gcc  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -Wl,-z,relro -Wl,-z,now -o gmap gmap-cpuid.o gmap-gmap_select.o  -lm 
gcc  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -Wl,-z,relro -Wl,-z,now -o gmapl gmapl-cpuid.o gmapl-gmapl_select.o  -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security   -Wl,-z,relro -Wl,-z,now -o get-genome get_genome-except.o get_genome-assert.o get_genome-mem.o get_genome-intlist.o get_genome-list.o get_genome-littleendian.o get_genome-bigendian.o get_genome-univinterval.o get_genome-interval.o get_genome-uintlist.o get_genome-stopwatch.o get_genome-semaphore.o get_genome-access.o get_genome-filestring.o get_genome-iit-read-univ.o get_genome-iit-read.o get_genome-md5.o get_genome-bzip2.o get_genome-fopen.o get_genome-sequence.o get_genome-genome.o get_genome-genomicpos.o get_genome-chrom.o get_genome-chrnum.o get_genome-datadir.o get_genome-parserange.o get_genome-getline.o get_genome-get-genome.o  -lz -lbz2 -lm 
gcc   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security   -Wl,-z,relro -Wl,-z,now -o gmapindex gmapindex-except.o gmapindex-assert.o gmapindex-mem.o gmapindex-intlist.o gmapindex-list.o gmapindex-littleendian.o gmapindex-bigendian.o gmapindex-univinterval.o gmapindex-interval.o gmapindex-uintlist.o gmapindex-stopwatch.o gmapindex-semaphore.o gmapindex-access.o gmapindex-filestring.o gmapindex-iit-read-univ.o gmapindex-iit-write-univ.o gmapindex-iit-read.o gmapindex-md5.o gmapindex-bzip2.o gmapindex-fopen.o gmapindex-sequence.o gmapindex-genome.o gmapindex-genomicpos.o gmapindex-compress-write.o gmapindex-genome-write.o gmapindex-compress.o gmapindex-popcount.o gmapindex-genome128_hr.o gmapindex-genome128_consec.o gmapindex-bitpack64-read.o gmapindex-bitpack64-readtwo.o gmapindex-bitpack64-access.o gmapindex-bitpack64-incr.o gmapindex-bitpack64-write.o gmapindex-indexdb.o gmapindex-indexdb-write.o gmapindex-regiondb.o gmapindex-regiondb-write.o gmapindex-table.o gmapindex-tableuint.o gmapindex-tableuint8.o gmapindex-tableint.o gmapindex-chrom.o gmapindex-segmentpos.o gmapindex-uint8list.o gmapindex-parserange.o gmapindex-getline.o gmapindex-gmapindex.o  -lz -lbz2 -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security   -Wl,-z,relro -Wl,-z,now -o indexdb_cat indexdb_cat-except.o indexdb_cat-assert.o indexdb_cat-mem.o indexdb_cat-littleendian.o indexdb_cat-bigendian.o indexdb_cat-genomicpos.o indexdb_cat-stopwatch.o indexdb_cat-semaphore.o indexdb_cat-access.o indexdb_cat-univinterval.o indexdb_cat-interval.o indexdb_cat-uintlist.o indexdb_cat-intlist.o indexdb_cat-list.o indexdb_cat-filestring.o indexdb_cat-iit-read-univ.o indexdb_cat-iit-read.o indexdb_cat-bitpack64-read.o indexdb_cat-bitpack64-readtwo.o indexdb_cat-bitpack64-access.o indexdb_cat-bitpack64-incr.o indexdb_cat-bitpack64-write.o indexdb_cat-indexdb.o indexdb_cat-indexdb-write.o indexdb_cat-compress-write.o indexdb_cat-bzip2.o indexdb_cat-fopen.o indexdb_cat-datadir.o indexdb_cat-parserange.o indexdb_cat-getline.o indexdb_cat-indexdb-cat.o  -lz -lbz2 -lm 
gcc    -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security   -Wl,-z,relro -Wl,-z,now -o iit_store iit_store-except.o iit_store-assert.o iit_store-mem.o iit_store-intlist.o iit_store-list.o iit_store-littleendian.o iit_store-bigendian.o iit_store-univinterval.o iit_store-interval.o iit_store-uintlist.o iit_store-stopwatch.o iit_store-semaphore.o iit_store-access.o iit_store-doublelist.o iit_store-iit-write-univ.o iit_store-iit-write.o iit_store-tableint.o iit_store-table.o iit_store-chrom.o iit_store-bzip2.o iit_store-getline.o iit_store-iit_store.o  -lz -lbz2 -lm 
gcc   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security   -Wl,-z,relro -Wl,-z,now -o iit_get iit_get-except.o iit_get-assert.o iit_get-mem.o iit_get-intlist.o iit_get-list.o iit_get-littleendian.o iit_get-bigendian.o iit_get-univinterval.o iit_get-interval.o iit_get-uintlist.o iit_get-stopwatch.o iit_get-semaphore.o iit_get-access.o iit_get-filestring.o iit_get-iit-read-univ.o iit_get-iit-read.o iit_get-parserange.o iit_get-bzip2.o iit_get-getline.o iit_get-iit_get.o  -lz -lbz2 -lm 
gcc   -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security   -Wl,-z,relro -Wl,-z,now -o iit_dump iit_dump-except.o iit_dump-assert.o iit_dump-mem.o iit_dump-littleendian.o iit_dump-bigendian.o iit_dump-intlist.o iit_dump-list.o iit_dump-univinterval.o iit_dump-interval.o iit_dump-uintlist.o iit_dump-stopwatch.o iit_dump-semaphore.o iit_dump-access.o iit_dump-filestring.o iit_dump-iit-read-univ.o iit_dump-iit-read.o iit_dump-parserange.o iit_dump-iit_dump.o  -lm 
gcc  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -Wl,-z,relro -Wl,-z,now -o gsnap gsnap-cpuid.o gsnap-gsnap_select.o  -lm 
gcc  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security  -Wl,-z,relro -Wl,-z,now -o gsnapl gsnapl-cpuid.o gsnapl-gsnapl_select.o  -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security   -Wl,-z,relro -Wl,-z,now -o snpindex snpindex-except.o snpindex-assert.o snpindex-mem.o snpindex-intlist.o snpindex-list.o snpindex-littleendian.o snpindex-bigendian.o snpindex-univinterval.o snpindex-interval.o snpindex-uintlist.o snpindex-stopwatch.o snpindex-semaphore.o snpindex-access.o snpindex-filestring.o snpindex-iit-read-univ.o snpindex-iit-read.o snpindex-genomicpos.o snpindex-compress.o snpindex-compress-write.o snpindex-popcount.o snpindex-genome128_hr.o snpindex-genome128_consec.o snpindex-bitpack64-read.o snpindex-bitpack64-readtwo.o snpindex-bitpack64-access.o snpindex-bitpack64-incr.o snpindex-bitpack64-write.o snpindex-indexdb.o snpindex-indexdb-write.o snpindex-chrom.o snpindex-md5.o snpindex-bzip2.o snpindex-fopen.o snpindex-sequence.o snpindex-genome.o snpindex-datadir.o snpindex-parserange.o snpindex-getline.o snpindex-snpindex.o  -lz -lbz2 -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security   -Wl,-z,relro -Wl,-z,now -o cmetindex cmetindex-except.o cmetindex-assert.o cmetindex-mem.o cmetindex-littleendian.o cmetindex-bigendian.o cmetindex-genomicpos.o cmetindex-stopwatch.o cmetindex-semaphore.o cmetindex-access.o cmetindex-univinterval.o cmetindex-interval.o cmetindex-filestring.o cmetindex-iit-read-univ.o cmetindex-iit-read.o cmetindex-compress.o cmetindex-compress-write.o cmetindex-popcount.o cmetindex-genome128_hr.o cmetindex-genome128_consec.o cmetindex-bitpack64-read.o cmetindex-bitpack64-readtwo.o cmetindex-bitpack64-access.o cmetindex-bitpack64-incr.o cmetindex-bitpack64-write.o cmetindex-indexdb.o cmetindex-indexdb-write.o cmetindex-regiondb-write.o cmetindex-cmet.o cmetindex-md5.o cmetindex-bzip2.o cmetindex-fopen.o cmetindex-sequence.o cmetindex-genome.o cmetindex-uintlist.o cmetindex-intlist.o cmetindex-uint8list.o cmetindex-list.o cmetindex-datadir.o cmetindex-parserange.o cmetindex-getline.o cmetindex-cmetindex.o  -lz -lbz2 -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security   -Wl,-z,relro -Wl,-z,now -o atoiindex atoiindex-except.o atoiindex-assert.o atoiindex-mem.o atoiindex-littleendian.o atoiindex-bigendian.o atoiindex-genomicpos.o atoiindex-stopwatch.o atoiindex-semaphore.o atoiindex-access.o atoiindex-univinterval.o atoiindex-interval.o atoiindex-filestring.o atoiindex-iit-read-univ.o atoiindex-iit-read.o atoiindex-compress.o atoiindex-compress-write.o atoiindex-popcount.o atoiindex-genome128_hr.o atoiindex-genome128_consec.o atoiindex-bitpack64-read.o atoiindex-bitpack64-readtwo.o atoiindex-bitpack64-access.o atoiindex-bitpack64-incr.o atoiindex-bitpack64-write.o atoiindex-indexdb.o atoiindex-indexdb-write.o atoiindex-regiondb-write.o atoiindex-atoi.o atoiindex-md5.o atoiindex-bzip2.o atoiindex-fopen.o atoiindex-sequence.o atoiindex-genome.o atoiindex-uintlist.o atoiindex-intlist.o atoiindex-uint8list.o atoiindex-list.o atoiindex-datadir.o atoiindex-parserange.o atoiindex-getline.o atoiindex-atoiindex.o  -lz -lbz2 -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security   -Wl,-z,relro -Wl,-z,now -o trindex trindex-except.o trindex-assert.o trindex-mem.o trindex-littleendian.o trindex-bigendian.o trindex-genomicpos.o trindex-stopwatch.o trindex-semaphore.o trindex-access.o trindex-interval.o trindex-filestring.o trindex-iit-read.o trindex-parserange.o trindex-univinterval.o trindex-iit-read-univ.o trindex-bitpack64-access.o trindex-bitpack64-write.o trindex-uintlist.o trindex-intlist.o trindex-list.o trindex-datadir.o trindex-bzip2.o trindex-getline.o trindex-trindex.o  -lz -lbz2 -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security   -Wl,-z,relro -Wl,-z,now -o sam_sort sam_sort-except.o sam_sort-assert.o sam_sort-mem.o sam_sort-littleendian.o sam_sort-bigendian.o sam_sort-intlist.o sam_sort-list.o sam_sort-stopwatch.o sam_sort-semaphore.o sam_sort-access.o sam_sort-univinterval.o sam_sort-interval.o sam_sort-uintlist.o sam_sort-filestring.o sam_sort-parserange.o sam_sort-iit-read-univ.o sam_sort-iit-read.o sam_sort-samheader.o sam_sort-samread.o sam_sort-bzip2.o sam_sort-getline.o sam_sort-datadir.o sam_sort-sam_sort.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\"  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security   -Wl,-z,relro -Wl,-z,now -o gmap.nosimd gmap_nosimd-except.o gmap_nosimd-assert.o gmap_nosimd-mem.o gmap_nosimd-intlist.o gmap_nosimd-uintlist.o gmap_nosimd-list.o gmap_nosimd-littleendian.o gmap_nosimd-bigendian.o gmap_nosimd-univinterval.o gmap_nosimd-interval.o gmap_nosimd-stopwatch.o gmap_nosimd-semaphore.o gmap_nosimd-access.o gmap_nosimd-filestring.o gmap_nosimd-iit-read-univ.o gmap_nosimd-iit-read.o gmap_nosimd-md5.o gmap_nosimd-bzip2.o gmap_nosimd-fopen.o gmap_nosimd-sequence.o gmap_nosimd-reader.o gmap_nosimd-genomicpos.o gmap_nosimd-compress.o gmap_nosimd-compress-write.o gmap_nosimd-gbuffer.o gmap_nosimd-genome.o gmap_nosimd-popcount.o gmap_nosimd-dinucl_bits.o gmap_nosimd-genome_canonical.o gmap_nosimd-genome-write.o gmap_nosimd-bitpack64-read.o gmap_nosimd-bitpack64-readtwo.o gmap_nosimd-indexdb.o gmap_nosimd-oligo.o gmap_nosimd-block.o gmap_nosimd-chrom.o gmap_nosimd-segmentpos.o gmap_nosimd-chrnum.o gmap_nosimd-uinttable_rh.o gmap_nosimd-gregion.o gmap_nosimd-match.o gmap_nosimd-matchpool.o gmap_nosimd-diagnostic.o gmap_nosimd-stage1.o gmap_nosimd-diag.o gmap_nosimd-diagpool.o gmap_nosimd-cmet.o gmap_nosimd-atoi.o gmap_nosimd-orderstat.o gmap_nosimd-oligoindex_hr.o gmap_nosimd-intron.o gmap_nosimd-maxent.o gmap_nosimd-maxent_hr.o gmap_nosimd-pair.o gmap_nosimd-pairpool.o gmap_nosimd-cellpool.o gmap_nosimd-stage2.o gmap_nosimd-doublelist.o gmap_nosimd-smooth.o gmap_nosimd-splicestringpool.o gmap_nosimd-splicetrie_build.o gmap_nosimd-splicetrie.o gmap_nosimd-boyer-moore.o gmap_nosimd-dynprog.o gmap_nosimd-dynprog_simd.o gmap_nosimd-dynprog_single.o gmap_nosimd-dynprog_genome.o gmap_nosimd-dynprog_cdna.o gmap_nosimd-dynprog_end.o gmap_nosimd-translation.o gmap_nosimd-pbinom.o gmap_nosimd-changepoint.o gmap_nosimd-stage3.o gmap_nosimd-request.o gmap_nosimd-result.o gmap_nosimd-output.o gmap_nosimd-inbuffer.o gmap_nosimd-samheader.o gmap_nosimd-printbuffer.o gmap_nosimd-outbuffer.o gmap_nosimd-chimera.o gmap_nosimd-datadir.o gmap_nosimd-parserange.o gmap_nosimd-getline.o gmap_nosimd-gmap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security   -Wl,-z,relro -Wl,-z,now -o gmapl.nosimd gmapl_nosimd-except.o gmapl_nosimd-assert.o gmapl_nosimd-mem.o gmapl_nosimd-intlist.o gmapl_nosimd-uintlist.o gmapl_nosimd-uint8list.o gmapl_nosimd-list.o gmapl_nosimd-littleendian.o gmapl_nosimd-bigendian.o gmapl_nosimd-univinterval.o gmapl_nosimd-interval.o gmapl_nosimd-stopwatch.o gmapl_nosimd-semaphore.o gmapl_nosimd-access.o gmapl_nosimd-filestring.o gmapl_nosimd-iit-read-univ.o gmapl_nosimd-iit-read.o gmapl_nosimd-md5.o gmapl_nosimd-bzip2.o gmapl_nosimd-fopen.o gmapl_nosimd-sequence.o gmapl_nosimd-reader.o gmapl_nosimd-genomicpos.o gmapl_nosimd-compress.o gmapl_nosimd-compress-write.o gmapl_nosimd-gbuffer.o gmapl_nosimd-genome.o gmapl_nosimd-popcount.o gmapl_nosimd-dinucl_bits.o gmapl_nosimd-genome_canonical.o gmapl_nosimd-genome-write.o gmapl_nosimd-bitpack64-read.o gmapl_nosimd-bitpack64-readtwo.o gmapl_nosimd-indexdb.o gmapl_nosimd-oligo.o gmapl_nosimd-block.o gmapl_nosimd-chrom.o gmapl_nosimd-segmentpos.o gmapl_nosimd-chrnum.o gmapl_nosimd-uinttable_rh.o gmapl_nosimd-gregion.o gmapl_nosimd-match.o gmapl_nosimd-matchpool.o gmapl_nosimd-diagnostic.o gmapl_nosimd-stage1.o gmapl_nosimd-diag.o gmapl_nosimd-diagpool.o gmapl_nosimd-cmet.o gmapl_nosimd-atoi.o gmapl_nosimd-orderstat.o gmapl_nosimd-oligoindex_hr.o gmapl_nosimd-intron.o gmapl_nosimd-maxent.o gmapl_nosimd-maxent_hr.o gmapl_nosimd-pair.o gmapl_nosimd-pairpool.o gmapl_nosimd-cellpool.o gmapl_nosimd-stage2.o gmapl_nosimd-doublelist.o gmapl_nosimd-smooth.o gmapl_nosimd-splicestringpool.o gmapl_nosimd-splicetrie_build.o gmapl_nosimd-splicetrie.o gmapl_nosimd-boyer-moore.o gmapl_nosimd-dynprog.o gmapl_nosimd-dynprog_simd.o gmapl_nosimd-dynprog_single.o gmapl_nosimd-dynprog_genome.o gmapl_nosimd-dynprog_cdna.o gmapl_nosimd-dynprog_end.o gmapl_nosimd-translation.o gmapl_nosimd-pbinom.o gmapl_nosimd-changepoint.o gmapl_nosimd-stage3.o gmapl_nosimd-request.o gmapl_nosimd-result.o gmapl_nosimd-output.o gmapl_nosimd-inbuffer.o gmapl_nosimd-samheader.o gmapl_nosimd-printbuffer.o gmapl_nosimd-outbuffer.o gmapl_nosimd-chimera.o gmapl_nosimd-datadir.o gmapl_nosimd-parserange.o gmapl_nosimd-getline.o gmapl_nosimd-gmap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security   -Wl,-z,relro -Wl,-z,now -o gsnap.nosimd gsnap_nosimd-except.o gsnap_nosimd-assert.o gsnap_nosimd-mem.o gsnap_nosimd-intlist.o gsnap_nosimd-uintlist.o gsnap_nosimd-list.o gsnap_nosimd-littleendian.o gsnap_nosimd-bigendian.o gsnap_nosimd-univinterval.o gsnap_nosimd-interval.o gsnap_nosimd-stopwatch.o gsnap_nosimd-semaphore.o gsnap_nosimd-access.o gsnap_nosimd-filestring.o gsnap_nosimd-iit-read-univ.o gsnap_nosimd-iit-read.o gsnap_nosimd-bzip2.o gsnap_nosimd-reader.o gsnap_nosimd-genomicpos.o gsnap_nosimd-compress.o gsnap_nosimd-genome.o gsnap_nosimd-transcriptome.o gsnap_nosimd-popcount.o gsnap_nosimd-genome128_hr.o gsnap_nosimd-genome128_consec.o gsnap_nosimd-dinucl_bits.o gsnap_nosimd-genome_sites.o gsnap_nosimd-bitpack64-read.o gsnap_nosimd-bitpack64-readtwo.o gsnap_nosimd-mergeinfo.o gsnap_nosimd-merge-uint4.o gsnap_nosimd-merge-diagonals-simd-uint4.o gsnap_nosimd-indexdb.o gsnap_nosimd-regiondb.o gsnap_nosimd-oligo.o gsnap_nosimd-chrnum.o gsnap_nosimd-maxent_hr.o gsnap_nosimd-mdprint.o gsnap_nosimd-cigar.o gsnap_nosimd-samprint.o gsnap_nosimd-mapq.o gsnap_nosimd-fopen.o gsnap_nosimd-shortread.o gsnap_nosimd-substring.o gsnap_nosimd-junction.o gsnap_nosimd-exon.o gsnap_nosimd-doublelist.o gsnap_nosimd-bitvector.o gsnap_nosimd-transcript.o gsnap_nosimd-method.o gsnap_nosimd-stage3hr.o gsnap_nosimd-ladder.o gsnap_nosimd-concordance.o gsnap_nosimd-simplepair.o gsnap_nosimd-maxent.o gsnap_nosimd-orderstat.o gsnap_nosimd-intlistpool.o gsnap_nosimd-uintlistpool.o gsnap_nosimd-listpool.o gsnap_nosimd-hitlistpool.o gsnap_nosimd-intron.o gsnap_nosimd-gbuffer.o gsnap_nosimd-knownsplicing.o gsnap_nosimd-splice.o gsnap_nosimd-indel.o gsnap_nosimd-bitpack64-access.o gsnap_nosimd-univdiag.o gsnap_nosimd-univdiagpool.o gsnap_nosimd-sedgesort.o gsnap_nosimd-intersect.o gsnap_nosimd-kmer-search.o gsnap_nosimd-path-solve.o gsnap_nosimd-extension-search.o gsnap_nosimd-segment-search.o gsnap_nosimd-terminal.o gsnap_nosimd-distant-rna.o gsnap_nosimd-distant-dna.o gsnap_nosimd-uint8table_rh.o gsnap_nosimd-uinttable_rh.o gsnap_nosimd-stage1hr.o gsnap_nosimd-tableuint.o gsnap_nosimd-single-cell.o gsnap_nosimd-request.o gsnap_nosimd-resulthr.o gsnap_nosimd-output.o gsnap_nosimd-inbuffer.o gsnap_nosimd-samheader.o gsnap_nosimd-printbuffer.o gsnap_nosimd-outbuffer.o gsnap_nosimd-datadir.o gsnap_nosimd-parserange.o gsnap_nosimd-getline.o gsnap_nosimd-gsnap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"aarch64-unknown-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1  -g -O2 -ffile-prefix-map=/build/gmap-2021-12-17+ds=. -fstack-protector-strong -Wformat -Werror=format-security   -Wl,-z,relro -Wl,-z,now -o gsnapl.nosimd gsnapl_nosimd-except.o gsnapl_nosimd-assert.o gsnapl_nosimd-mem.o gsnapl_nosimd-intlist.o gsnapl_nosimd-uintlist.o gsnapl_nosimd-uint8list.o gsnapl_nosimd-list.o gsnapl_nosimd-littleendian.o gsnapl_nosimd-bigendian.o gsnapl_nosimd-univinterval.o gsnapl_nosimd-interval.o gsnapl_nosimd-stopwatch.o gsnapl_nosimd-semaphore.o gsnapl_nosimd-access.o gsnapl_nosimd-filestring.o gsnapl_nosimd-iit-read-univ.o gsnapl_nosimd-iit-read.o gsnapl_nosimd-bzip2.o gsnapl_nosimd-reader.o gsnapl_nosimd-genomicpos.o gsnapl_nosimd-compress.o gsnapl_nosimd-genome.o gsnapl_nosimd-transcriptome.o gsnapl_nosimd-popcount.o gsnapl_nosimd-genome128_hr.o gsnapl_nosimd-genome128_consec.o gsnapl_nosimd-dinucl_bits.o gsnapl_nosimd-genome_sites.o gsnapl_nosimd-bitpack64-read.o gsnapl_nosimd-bitpack64-readtwo.o gsnapl_nosimd-mergeinfo.o gsnapl_nosimd-merge-diagonals-heap.o gsnapl_nosimd-merge-uint8.o gsnapl_nosimd-merge-diagonals-simd-uint8.o gsnapl_nosimd-merge-uint4.o gsnapl_nosimd-merge-diagonals-simd-uint4.o gsnapl_nosimd-indexdb.o gsnapl_nosimd-regiondb.o gsnapl_nosimd-oligo.o gsnapl_nosimd-chrnum.o gsnapl_nosimd-maxent_hr.o gsnapl_nosimd-mdprint.o gsnapl_nosimd-cigar.o gsnapl_nosimd-samprint.o gsnapl_nosimd-mapq.o gsnapl_nosimd-fopen.o gsnapl_nosimd-shortread.o gsnapl_nosimd-substring.o gsnapl_nosimd-junction.o gsnapl_nosimd-exon.o gsnapl_nosimd-doublelist.o gsnapl_nosimd-bitvector.o gsnapl_nosimd-transcript.o gsnapl_nosimd-method.o gsnapl_nosimd-stage3hr.o gsnapl_nosimd-ladder.o gsnapl_nosimd-concordance.o gsnapl_nosimd-simplepair.o gsnapl_nosimd-maxent.o gsnapl_nosimd-orderstat.o gsnapl_nosimd-intlistpool.o gsnapl_nosimd-uint8listpool.o gsnapl_nosimd-listpool.o gsnapl_nosimd-hitlistpool.o gsnapl_nosimd-intron.o gsnapl_nosimd-gbuffer.o gsnapl_nosimd-knownsplicing.o gsnapl_nosimd-splice.o gsnapl_nosimd-indel.o gsnapl_nosimd-bitpack64-access.o gsnapl_nosimd-univdiag.o gsnapl_nosimd-univdiagpool.o gsnapl_nosimd-sedgesort.o gsnapl_nosimd-intersect.o gsnapl_nosimd-intersect-large.o gsnapl_nosimd-kmer-search.o gsnapl_nosimd-path-solve.o gsnapl_nosimd-extension-search.o gsnapl_nosimd-segment-search.o gsnapl_nosimd-terminal.o gsnapl_nosimd-distant-rna.o gsnapl_nosimd-distant-dna.o gsnapl_nosimd-uint8table_rh.o gsnapl_nosimd-stage1hr.o gsnapl_nosimd-tableuint.o gsnapl_nosimd-single-cell.o gsnapl_nosimd-request.o gsnapl_nosimd-resulthr.o gsnapl_nosimd-output.o gsnapl_nosimd-inbuffer.o gsnapl_nosimd-samheader.o gsnapl_nosimd-printbuffer.o gsnapl_nosimd-outbuffer.o gsnapl_nosimd-datadir.o gsnapl_nosimd-parserange.o gsnapl_nosimd-getline.o gsnapl_nosimd-gsnap.o  -lz -lbz2 -lm 
make[3]: Leaving directory '/build/gmap-2021-12-17+ds/src'
make[2]: Leaving directory '/build/gmap-2021-12-17+ds/src'
Making all in util
make[2]: Entering directory '/build/gmap-2021-12-17+ds/util'
cp gmap_process.pl gmap_process
cp gmap_build.pl gmap_build
cp gmap_cat.pl gmap_cat
cp md_coords.pl md_coords
chmod +x gmap_process
chmod +x gmap_build
cp fa_coords.pl fa_coords
chmod +x gmap_cat
chmod +x md_coords
cp psl_splicesites.pl psl_splicesites
chmod +x fa_coords
chmod +x psl_splicesites
cp psl_introns.pl psl_introns
cp psl_genes.pl psl_genes
cp ensembl_genes.pl ensembl_genes
cp gtf_splicesites.pl gtf_splicesites
chmod +x psl_introns
chmod +x psl_genes
cp gtf_introns.pl gtf_introns
chmod +x ensembl_genes
chmod +x gtf_splicesites
cp gtf_genes.pl gtf_genes
chmod +x gtf_introns
cp gtf_transcript_splicesites.pl gtf_transcript_splicesites
cp gff3_splicesites.pl gff3_splicesites
chmod +x gtf_genes
cp gff3_introns.pl gff3_introns
chmod +x gtf_transcript_splicesites
chmod +x gff3_splicesites
cp gff3_genes.pl gff3_genes
cp dbsnp_iit.pl dbsnp_iit
chmod +x gff3_introns
cp gvf_iit.pl gvf_iit
chmod +x gff3_genes
chmod +x dbsnp_iit
cp vcf_iit.pl vcf_iit
chmod +x gvf_iit
chmod +x vcf_iit
make[2]: Leaving directory '/build/gmap-2021-12-17+ds/util'
Making all in tests
make[2]: Entering directory '/build/gmap-2021-12-17+ds/tests'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/build/gmap-2021-12-17+ds/tests'
make[2]: Entering directory '/build/gmap-2021-12-17+ds'
make[2]: Nothing to be done for 'all-am'.
make[2]: Leaving directory '/build/gmap-2021-12-17+ds'
make[1]: Leaving directory '/build/gmap-2021-12-17+ds'
   debian/rules override_dh_auto_test
make[1]: Entering directory '/build/gmap-2021-12-17+ds'
dh_auto_test --no-parallel
	make -j1 check "TESTSUITEFLAGS=-j1 --verbose" VERBOSE=1
make[2]: Entering directory '/build/gmap-2021-12-17+ds'
Making check in src
make[3]: Entering directory '/build/gmap-2021-12-17+ds/src'
make[3]: Leaving directory '/build/gmap-2021-12-17+ds/src'
Making check in util
make[3]: Entering directory '/build/gmap-2021-12-17+ds/util'
make[3]: Nothing to be done for 'check'.
make[3]: Leaving directory '/build/gmap-2021-12-17+ds/util'
Making check in tests
make[3]: Entering directory '/build/gmap-2021-12-17+ds/tests'
make  check-TESTS
make[4]: Entering directory '/build/gmap-2021-12-17+ds/tests'
make[5]: Entering directory '/build/gmap-2021-12-17+ds/tests'
PASS: align.test
PASS: coords1.test
PASS: setup1.test
PASS: iit.test
============================================================================
Testsuite summary for gmap 2021-12-17
============================================================================
# TOTAL: 4
# PASS:  4
# SKIP:  0
# XFAIL: 0
# FAIL:  0
# XPASS: 0
# ERROR: 0
============================================================================
make[5]: Leaving directory '/build/gmap-2021-12-17+ds/tests'
make[4]: Leaving directory '/build/gmap-2021-12-17+ds/tests'
make[3]: Leaving directory '/build/gmap-2021-12-17+ds/tests'
make[3]: Entering directory '/build/gmap-2021-12-17+ds'
make[3]: Nothing to be done for 'check-am'.
make[3]: Leaving directory '/build/gmap-2021-12-17+ds'
make[2]: Leaving directory '/build/gmap-2021-12-17+ds'
make[1]: Leaving directory '/build/gmap-2021-12-17+ds'
   create-stamp debian/debhelper-build-stamp
   dh_prep
   debian/rules override_dh_auto_install
make[1]: Entering directory '/build/gmap-2021-12-17+ds'
mkdir -p /build/gmap-2021-12-17+ds/debian/gmap/usr/share/man/man1
/usr/bin/help2man --no-info --version-string=2021-12-17+ds-3 --name='Genomic Mapping and Alignment Program' \
/build/gmap-2021-12-17+ds/src/gmap |debian/filter.pl >/build/gmap-2021-12-17+ds/debian/gmap/usr/share/man/man1/gmap.1
/usr/bin/help2man --no-info --version-string=2021-12-17+ds-3 --name='Genomic Short-read Nucleotide Alignment Program' \
/build/gmap-2021-12-17+ds/src/gsnap |debian/filter.pl >/build/gmap-2021-12-17+ds/debian/gmap/usr/share/man/man1/gsnap.1
/usr/bin/help2man --no-info --version-string=2021-12-17+ds-3 --name='Tool for genome database creation for GMAP or GSNAP' \
/build/gmap-2021-12-17+ds/util/gmap_build |debian/filter.pl >/build/gmap-2021-12-17+ds/debian/gmap/usr/share/man/man1/gmap_build.1
dh_auto_install
	make -j8 install DESTDIR=/build/gmap-2021-12-17\+ds/debian/gmap AM_UPDATE_INFO_DIR=no
make[2]: Entering directory '/build/gmap-2021-12-17+ds'
Making install in src
make[3]: Entering directory '/build/gmap-2021-12-17+ds/src'
make[4]: Entering directory '/build/gmap-2021-12-17+ds/src'
make[4]: Nothing to be done for 'install-data-am'.
 /usr/bin/mkdir -p '/build/gmap-2021-12-17+ds/debian/gmap/usr/lib/gmap'
  /usr/bin/install -c cpuid gmap gmapl get-genome gmapindex indexdb_cat iit_store iit_get iit_dump gsnap gsnapl snpindex cmetindex atoiindex trindex sam_sort gmap.nosimd gmapl.nosimd gsnap.nosimd gsnapl.nosimd '/build/gmap-2021-12-17+ds/debian/gmap/usr/lib/gmap'
make[4]: Leaving directory '/build/gmap-2021-12-17+ds/src'
make[3]: Leaving directory '/build/gmap-2021-12-17+ds/src'
Making install in util
make[3]: Entering directory '/build/gmap-2021-12-17+ds/util'
make[4]: Entering directory '/build/gmap-2021-12-17+ds/util'
make[4]: Nothing to be done for 'install-data-am'.
 /usr/bin/mkdir -p '/build/gmap-2021-12-17+ds/debian/gmap/usr/lib/gmap'
 /usr/bin/install -c gmap_process gmap_build gmap_cat md_coords fa_coords psl_splicesites psl_introns psl_genes ensembl_genes gtf_splicesites gtf_introns gtf_genes gtf_transcript_splicesites gff3_splicesites gff3_introns gff3_genes dbsnp_iit gvf_iit vcf_iit '/build/gmap-2021-12-17+ds/debian/gmap/usr/lib/gmap'
make[4]: Leaving directory '/build/gmap-2021-12-17+ds/util'
make[3]: Leaving directory '/build/gmap-2021-12-17+ds/util'
Making install in tests
make[3]: Entering directory '/build/gmap-2021-12-17+ds/tests'
make[4]: Entering directory '/build/gmap-2021-12-17+ds/tests'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/build/gmap-2021-12-17+ds/tests'
make[3]: Leaving directory '/build/gmap-2021-12-17+ds/tests'
make[3]: Entering directory '/build/gmap-2021-12-17+ds'
make[4]: Entering directory '/build/gmap-2021-12-17+ds'
make[4]: Nothing to be done for 'install-exec-am'.
/bin/sh /build/gmap-2021-12-17+ds/config/install-sh -d /build/gmap-2021-12-17+ds/debian/gmap/var/cache/gmap
make[4]: Leaving directory '/build/gmap-2021-12-17+ds'
make[3]: Leaving directory '/build/gmap-2021-12-17+ds'
make[2]: Leaving directory '/build/gmap-2021-12-17+ds'
make[1]: Leaving directory '/build/gmap-2021-12-17+ds'
   debian/rules override_dh_install
make[1]: Entering directory '/build/gmap-2021-12-17+ds'
mkdir -p debian/gmap/usr/bin
dh_install
for bin in `echo gmap gsnap gmap_build gmapl gsnapl; \
	cd /build/gmap-2021-12-17+ds/debian/gmap/usr/lib/gmap/; \
	ls -1 gmap*.* gsnap*.* `; do \
	ln -s /usr/lib/gmap/$bin debian/gmap/usr/bin/$bin; \
done
make[1]: Leaving directory '/build/gmap-2021-12-17+ds'
   dh_installdocs
   dh_installchangelogs
   debian/rules override_dh_installexamples
make[1]: Entering directory '/build/gmap-2021-12-17+ds'
mkdir /build/gmap-2021-12-17+ds/debian/gmap/usr/share/doc/gmap/examples
find tests/ -type f -print0 | xargs -0r sed -i \
	-e 's@/build/gmap-2021-12-17+ds@«buildpath»@g' \
	-e 's@\#! /bin/bash@\#! /bin/sh@g'
tar --sort=name \
	--mtime="@1664818591" \
	--owner=root --group=root --numeric-owner \
	--mode=go=rX,u+rw,a-s \
	--exclude='*/align.log' \
	--exclude='*/Makefile' \
	--exclude='*/Makefile.in' \
	-cJf /build/gmap-2021-12-17+ds/debian/gmap/usr/share/doc/gmap/examples/tests.tar.xz  tests
make[1]: Leaving directory '/build/gmap-2021-12-17+ds'
   dh_installman
   dh_lintian
   dh_perl
   dh_link
   dh_strip_nondeterminism
   dh_compress
   dh_fixperms
   dh_missing
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
   dh_installdeb
   dh_gencontrol
   dh_md5sums
   dh_builddeb
dpkg-deb: building package 'gmap-dbgsym' in '../gmap-dbgsym_2021-12-17+ds-3_arm64.deb'.
dpkg-deb: building package 'gmap' in '../gmap_2021-12-17+ds-3_arm64.deb'.
 dpkg-genbuildinfo --build=binary -O../gmap_2021-12-17+ds-3_arm64.buildinfo
 dpkg-genchanges --build=binary -O../gmap_2021-12-17+ds-3_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/4584/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/4584/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/4584 and its subdirectories
I: Current time: Thu May 30 12:54:20 +14 2024
I: pbuilder-time-stamp: 1717023260