I: pbuilder: network access will be disabled during build
I: Current time: Wed Apr 12 08:15:14 +14 2023
I: pbuilder-time-stamp: 1681236914
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [kissplice_2.6.2-2.dsc]
I: copying [./kissplice_2.6.2.orig.tar.gz]
I: copying [./kissplice_2.6.2-2.debian.tar.xz]
I: Extracting source
gpgv: Signature made Sat Jan 21 09:11:29 2023 +14
gpgv:                using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./kissplice_2.6.2-2.dsc: no acceptable signature found
dpkg-source: info: extracting kissplice in kissplice-2.6.2
dpkg-source: info: unpacking kissplice_2.6.2.orig.tar.gz
dpkg-source: info: unpacking kissplice_2.6.2-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying tests-2to3.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/8864/tmp/hooks/D01_modify_environment starting
debug: Running on codethink14-arm64.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
lrwxrwxrwx 1 root root 4 Jan  6 03:20 /bin/sh -> dash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/8864/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/8864/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build'
  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
  BUILDUSERNAME='pbuilder2'
  BUILD_ARCH='arm64'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8'
  DISTRIBUTION='bookworm'
  HOME='/var/lib/jenkins'
  HOST_ARCH='arm64'
  IFS=' 	
  '
  LANG='C'
  LANGUAGE='nl_BE:nl'
  LC_ALL='C'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='8864'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.CnRzFl8S/pbuilderrc_uRXd --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.CnRzFl8S/b2 --logfile b2/build.log --extrapackages usrmerge kissplice_2.6.2-2.dsc'
  SUDO_GID='117'
  SUDO_UID='110'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT-14'
  USER='root'
  USERNAME='root'
  _='/usr/bin/systemd-run'
  http_proxy='http://192.168.101.16:3128'
I: uname -a
  Linux i-capture-the-hostname 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Apr 11 00:24 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/8864/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-python, cmake, python3-dev, libpython3-stdlib, zlib1g-dev, texlive-latex-recommended, bcalm
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19616 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on dh-python; however:
  Package dh-python is not installed.
 pbuilder-satisfydepends-dummy depends on cmake; however:
  Package cmake is not installed.
 pbuilder-satisfydepends-dummy depends on python3-dev; however:
  Package python3-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libpython3-stdlib; however:
  Package libpython3-stdlib is not installed.
 pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
  Package zlib1g-dev is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however:
  Package texlive-latex-recommended is not installed.
 pbuilder-satisfydepends-dummy depends on bcalm; however:
  Package bcalm is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bcalm{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcurl4{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgatbcore3{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhdf5-103-1{a} libice6{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp25{a} libkpathsea6{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpaper-utils{a} libpaper1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libproc2-0{a} libpsl5{a} libptexenc1{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsm6{a} libssh2-1{a} libsub-override-perl{a} libsynctex2{a} libsz2{a} libteckit0{a} libtexlua53-5{a} libtool{a} libuchardet0{a} libuv1{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6{a} libzzip-0-13{a} m4{a} man-db{a} media-types{a} po-debconf{a} procps{a} python3{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-latex-base{a} texlive-latex-recommended{a} ucf{a} x11-common{a} xdg-utils{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  ca-certificates curl dvisvgm javascript-common libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libx11-protocol-perl lmodern lynx psmisc publicsuffix shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 
0 packages upgraded, 121 newly installed, 0 to remove and 0 not upgraded.
Need to get 101 MB of archives. After unpacking 357 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-minimal arm64 3.11.2-6 [806 kB]
Get: 2 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB]
Get: 3 http://deb.debian.org/debian bookworm/main arm64 python3.11-minimal arm64 3.11.2-6 [1858 kB]
Get: 4 http://deb.debian.org/debian bookworm/main arm64 python3-minimal arm64 3.11.2-1+b1 [26.3 kB]
Get: 5 http://deb.debian.org/debian bookworm/main arm64 media-types all 10.0.0 [26.1 kB]
Get: 6 http://deb.debian.org/debian bookworm/main arm64 readline-common all 8.2-1.3 [69.0 kB]
Get: 7 http://deb.debian.org/debian bookworm/main arm64 libreadline8 arm64 8.2-1.3 [155 kB]
Get: 8 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-stdlib arm64 3.11.2-6 [1747 kB]
Get: 9 http://deb.debian.org/debian bookworm/main arm64 python3.11 arm64 3.11.2-6 [572 kB]
Get: 10 http://deb.debian.org/debian bookworm/main arm64 libpython3-stdlib arm64 3.11.2-1+b1 [9296 B]
Get: 11 http://deb.debian.org/debian bookworm/main arm64 python3 arm64 3.11.2-1+b1 [26.3 kB]
Get: 12 http://deb.debian.org/debian bookworm/main arm64 libproc2-0 arm64 2:4.0.2-3 [60.1 kB]
Get: 13 http://deb.debian.org/debian bookworm/main arm64 procps arm64 2:4.0.2-3 [698 kB]
Get: 14 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 15 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB]
Get: 16 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB]
Get: 17 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB]
Get: 18 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB]
Get: 19 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB]
Get: 20 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB]
Get: 21 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB]
Get: 22 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB]
Get: 23 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB]
Get: 24 http://deb.debian.org/debian bookworm/main arm64 ucf all 3.0043+nmu1 [55.2 kB]
Get: 25 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB]
Get: 26 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB]
Get: 27 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 28 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get: 29 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB]
Get: 30 http://deb.debian.org/debian bookworm/main arm64 libgatbcore3 arm64 1.4.2+dfsg-11 [1560 kB]
Get: 31 http://deb.debian.org/debian bookworm/main arm64 libbrotli1 arm64 1.0.9-2+b6 [269 kB]
Get: 32 http://deb.debian.org/debian bookworm/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg-10 [20.8 kB]
Get: 33 http://deb.debian.org/debian bookworm/main arm64 libsasl2-2 arm64 2.1.28+dfsg-10 [58.0 kB]
Get: 34 http://deb.debian.org/debian bookworm/main arm64 libldap-2.5-0 arm64 2.5.13+dfsg-5 [171 kB]
Get: 35 http://deb.debian.org/debian bookworm/main arm64 libnghttp2-14 arm64 1.52.0-1 [67.9 kB]
Get: 36 http://deb.debian.org/debian bookworm/main arm64 libpsl5 arm64 0.21.2-1 [58.6 kB]
Get: 37 http://deb.debian.org/debian bookworm/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB]
Get: 38 http://deb.debian.org/debian bookworm/main arm64 libssh2-1 arm64 1.10.0-3+b1 [172 kB]
Get: 39 http://deb.debian.org/debian bookworm/main arm64 libcurl4 arm64 7.88.1-7 [361 kB]
Get: 40 http://deb.debian.org/debian bookworm/main arm64 libaec0 arm64 1.0.6-1+b1 [19.9 kB]
Get: 41 http://deb.debian.org/debian bookworm/main arm64 libsz2 arm64 1.0.6-1+b1 [7740 B]
Get: 42 http://deb.debian.org/debian bookworm/main arm64 libhdf5-103-1 arm64 1.10.8+repack1-1 [1037 kB]
Get: 43 http://deb.debian.org/debian bookworm/main arm64 bcalm arm64 2.2.3-4 [34.3 kB]
Get: 44 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB]
Get: 45 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.1+b3 [619 kB]
Get: 46 http://deb.debian.org/debian bookworm/main arm64 libarchive13 arm64 3.6.2-1 [316 kB]
Get: 47 http://deb.debian.org/debian bookworm/main arm64 libjsoncpp25 arm64 1.9.5-4 [72.3 kB]
Get: 48 http://deb.debian.org/debian bookworm/main arm64 librhash0 arm64 1.4.3-3 [131 kB]
Get: 49 http://deb.debian.org/debian bookworm/main arm64 libuv1 arm64 1.44.2-1 [133 kB]
Get: 50 http://deb.debian.org/debian bookworm/main arm64 cmake-data all 3.25.1-1 [2026 kB]
Get: 51 http://deb.debian.org/debian bookworm/main arm64 cmake arm64 3.25.1-1 [6806 kB]
Get: 52 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 53 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB]
Get: 54 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 55 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 56 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B]
Get: 57 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 58 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 59 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB]
Get: 60 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB]
Get: 61 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB]
Get: 62 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 63 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 64 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB]
Get: 65 http://deb.debian.org/debian bookworm/main arm64 python3-lib2to3 all 3.11.2-2 [76.2 kB]
Get: 66 http://deb.debian.org/debian bookworm/main arm64 python3-distutils all 3.11.2-2 [131 kB]
Get: 67 http://deb.debian.org/debian bookworm/main arm64 dh-python all 5.20230130 [104 kB]
Get: 68 http://deb.debian.org/debian bookworm/main arm64 fonts-dejavu-core all 2.37-6 [1068 kB]
Get: 69 http://deb.debian.org/debian bookworm/main arm64 fontconfig-config arm64 2.14.1-4 [315 kB]
Get: 70 http://deb.debian.org/debian bookworm/main arm64 fonts-lmodern all 2.005-1 [4540 kB]
Get: 71 http://deb.debian.org/debian bookworm/main arm64 libbsd0 arm64 0.11.7-2 [115 kB]
Get: 72 http://deb.debian.org/debian bookworm/main arm64 libpng16-16 arm64 1.6.39-2 [269 kB]
Get: 73 http://deb.debian.org/debian bookworm/main arm64 libfreetype6 arm64 2.12.1+dfsg-4 [369 kB]
Get: 74 http://deb.debian.org/debian bookworm/main arm64 libfontconfig1 arm64 2.14.1-4 [381 kB]
Get: 75 http://deb.debian.org/debian bookworm/main arm64 libpixman-1-0 arm64 0.42.2-1 [470 kB]
Get: 76 http://deb.debian.org/debian bookworm/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB]
Get: 77 http://deb.debian.org/debian bookworm/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB]
Get: 78 http://deb.debian.org/debian bookworm/main arm64 libxcb1 arm64 1.15-1 [143 kB]
Get: 79 http://deb.debian.org/debian bookworm/main arm64 libx11-data all 2:1.8.4-2 [292 kB]
Get: 80 http://deb.debian.org/debian bookworm/main arm64 libx11-6 arm64 2:1.8.4-2 [736 kB]
Get: 81 http://deb.debian.org/debian bookworm/main arm64 libxcb-render0 arm64 1.15-1 [115 kB]
Get: 82 http://deb.debian.org/debian bookworm/main arm64 libxcb-shm0 arm64 1.15-1 [106 kB]
Get: 83 http://deb.debian.org/debian bookworm/main arm64 libxext6 arm64 2:1.3.4-1+b1 [51.7 kB]
Get: 84 http://deb.debian.org/debian bookworm/main arm64 libxrender1 arm64 1:0.9.10-1.1 [32.0 kB]
Get: 85 http://deb.debian.org/debian bookworm/main arm64 libcairo2 arm64 1.16.0-7 [527 kB]
Get: 86 http://deb.debian.org/debian bookworm/main arm64 libexpat1-dev arm64 2.5.0-1 [135 kB]
Get: 87 http://deb.debian.org/debian bookworm/main arm64 libglib2.0-0 arm64 2.74.6-1 [1311 kB]
Get: 88 http://deb.debian.org/debian bookworm/main arm64 libgraphite2-3 arm64 1.3.14-1 [75.6 kB]
Get: 89 http://deb.debian.org/debian bookworm/main arm64 libharfbuzz0b arm64 6.0.0+dfsg-3 [1914 kB]
Get: 90 http://deb.debian.org/debian bookworm/main arm64 x11-common all 1:7.7+23 [252 kB]
Get: 91 http://deb.debian.org/debian bookworm/main arm64 libice6 arm64 2:1.0.10-1 [55.6 kB]
Get: 92 http://deb.debian.org/debian bookworm/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 93 http://deb.debian.org/debian bookworm/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get: 94 http://deb.debian.org/debian bookworm/main arm64 libjs-sphinxdoc all 5.3.0-4 [130 kB]
Get: 95 http://deb.debian.org/debian bookworm/main arm64 libkpathsea6 arm64 2022.20220321.62855-5 [148 kB]
Get: 96 http://deb.debian.org/debian bookworm/main arm64 libpaper1 arm64 1.1.29 [12.6 kB]
Get: 97 http://deb.debian.org/debian bookworm/main arm64 libpaper-utils arm64 1.1.29 [8776 B]
Get: 98 http://deb.debian.org/debian bookworm/main arm64 libptexenc1 arm64 2022.20220321.62855-5 [42.7 kB]
Get: 99 http://deb.debian.org/debian bookworm/main arm64 libpython3.11 arm64 3.11.2-6 [1841 kB]
Get: 100 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB]
Get: 101 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-dev arm64 3.11.2-6 [4395 kB]
Get: 102 http://deb.debian.org/debian bookworm/main arm64 libpython3-dev arm64 3.11.2-1+b1 [9564 B]
Get: 103 http://deb.debian.org/debian bookworm/main arm64 libsm6 arm64 2:1.2.3-1 [34.0 kB]
Get: 104 http://deb.debian.org/debian bookworm/main arm64 libsynctex2 arm64 2022.20220321.62855-5 [57.0 kB]
Get: 105 http://deb.debian.org/debian bookworm/main arm64 libteckit0 arm64 2.5.11+ds1-1+b1 [299 kB]
Get: 106 http://deb.debian.org/debian bookworm/main arm64 libtexlua53-5 arm64 2022.20220321.62855-5 [102 kB]
Get: 107 http://deb.debian.org/debian bookworm/main arm64 libxt6 arm64 1:1.2.1-1.1 [172 kB]
Get: 108 http://deb.debian.org/debian bookworm/main arm64 libxmu6 arm64 2:1.1.3-3 [57.2 kB]
Get: 109 http://deb.debian.org/debian bookworm/main arm64 libxpm4 arm64 1:3.5.12-1.1 [45.2 kB]
Get: 110 http://deb.debian.org/debian bookworm/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB]
Get: 111 http://deb.debian.org/debian bookworm/main arm64 libxi6 arm64 2:1.8-1+b1 [82.3 kB]
Get: 112 http://deb.debian.org/debian bookworm/main arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [58.3 kB]
Get: 113 http://deb.debian.org/debian bookworm/main arm64 python3.11-dev arm64 3.11.2-6 [617 kB]
Get: 114 http://deb.debian.org/debian bookworm/main arm64 python3-dev arm64 3.11.2-1+b1 [26.2 kB]
Get: 115 http://deb.debian.org/debian bookworm/main arm64 t1utils arm64 1.41-4 [59.8 kB]
Get: 116 http://deb.debian.org/debian bookworm/main arm64 tex-common all 6.18 [32.5 kB]
Get: 117 http://deb.debian.org/debian bookworm/main arm64 texlive-binaries arm64 2022.20220321.62855-5 [7570 kB]
Get: 118 http://deb.debian.org/debian bookworm/main arm64 xdg-utils all 1.1.3-4.1 [75.5 kB]
Get: 119 http://deb.debian.org/debian bookworm/main arm64 texlive-base all 2022.20230122-2 [21.9 MB]
Get: 120 http://deb.debian.org/debian bookworm/main arm64 texlive-latex-base all 2022.20230122-2 [1181 kB]
Get: 121 http://deb.debian.org/debian bookworm/main arm64 texlive-latex-recommended all 2022.20230122-2 [8880 kB]
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usrmerge is already the newest version (35).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: user script /srv/workspace/pbuilder/8864/tmp/hooks/A99_set_merged_usr starting
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I: user script /srv/workspace/pbuilder/8864/tmp/hooks/A99_set_merged_usr finished
hostname: Temporary failure in name resolution
I: Running cd /build/kissplice-2.6.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../kissplice_2.6.2-2_source.changes
dpkg-buildpackage: info: source package kissplice
dpkg-buildpackage: info: source version 2.6.2-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Sascha Steinbiss <satta@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
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dh clean --with python3
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dh_auto_configure -- -DCMAKE_INSTALL_LIBEXECDIR=lib/
	cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DCMAKE_INSTALL_LIBEXECDIR=lib/ ..
-- The CXX compiler identification is GNU 12.2.0
-- Detecting CXX compiler ABI info
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-- Detecting CXX compile features
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-- Found bcalm tool: /usr/bin/bcalm
-- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.2.13") 
-- Found OpenMP_CXX: -fopenmp (found version "4.5") 
-- Found OpenMP: TRUE (found version "4.5")  
-- Found LATEX: /usr/bin/latex   
-- Configuring done
-- Generating done
CMake Warning:
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    CMAKE_EXPORT_NO_PACKAGE_REGISTRY
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\T1/cmr/m/n/12 If you have ques-tions, please use pri-mar-ily the biostars fo-r
um: $\T1/cmtt/m/n/12 www . biostars . org / t / kissplice/$ 

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  439 |                     for (ii=offset_seed; ii<offset_seed+nb_seeds; ii++) {
      |                                          ~~^~~~~~~~~~~~~~~~~~~~~
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(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exroman.mf
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 Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expseudo.mf
 Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exruwest.mf
 Ok [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203]
[204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215]
[216] [217] [218] [219] [220]In file included from /build/kissplice-2.6.2/modules/PrintBcc.cpp:51:
/build/kissplice-2.6.2/modules/BubbleEnumeration.h: In function 'bool read_edges_and_nodes_withoptimIO(char*, char*, char*, char*, char*, int*, TEdgeFunctor, TNodeFunctor&) [with TEdgeFunctor = Printer; TNodeFunctor = Printer]':
/build/kissplice-2.6.2/modules/BubbleEnumeration.h:84:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
   84 |   fscanf(info_file, "%d \n",&bcc_size );
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 [221] [222] [223])/build/kissplice-2.6.2/modules/BubbleEnumeration.h:85:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
   85 |   fscanf(info_file, "%d \n",&records_per_file );
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlwest.mfIn file included from /build/kissplice-2.6.2/modules/PrintBcc.cpp:50:
/build/kissplice-2.6.2/modules/CGraph.h: In function 'bool read_node_noncontigous_file_withoptimIO(FILE*, FILE*, int*, int*, TFunctor&) [with TFunctor = Printer]':
/build/kissplice-2.6.2/modules/CGraph.h:235:68: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  235 |   for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file_node);
      |                                                               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/CGraph.h:236:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
  236 |   fscanf(contents_file_node, "%d \n",&written_lines_before );
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/CGraph.h:237:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
  237 |   fscanf(contents_file_node, "%d \n",&written_lines_for_record );
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/CGraph.h:248:58: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  248 |     for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, node_file);
      |                                                     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/PrintBcc.cpp: In member function 'void Printer::operator()(FILE*, int)':
/build/kissplice-2.6.2/modules/PrintBcc.cpp:64:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
   64 |       fgets(buffer, 100 * MAX, in_file);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/CGraph.h: In function 'void read_edge_file_withoptimIO(FILE*, FILE*, int*, int*, TFunctor&) [with TFunctor = Printer]':
/build/kissplice-2.6.2/modules/CGraph.h:313:68: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  313 |   for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file_edge);
      |                                                               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/CGraph.h:314:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
  314 |   fscanf(contents_file_edge, "%d \n",&written_lines_before );
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/CGraph.h:315:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
  315 |   fscanf(contents_file_edge, "%d \n",&written_lines_for_record );
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/CGraph.h:322:56: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  322 |   for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, edge_file);
      |                                                   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

 Ok [224] [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235]
[236] [237] [238] [239] [240] [241] [242] [243] [244] [245] [246] [247]
[248] [249] [250] [251] [252] [253] [254] [255])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrueast.mf
 Ok [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139]
[140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151]
[152] [153] [154] [155] [156] [157])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrleast.mf
 Ok [158] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170]
[171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182]
[183] [184] [185] [186] [187] [188])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbraces.mf
 Ok [94] [126] [23] [40] [41] [60] [124] [62] [91] [93] [92] [123] [125]
[95] [127] [32])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expunct.mf
 Ok [14] [15] [19] [20] [13] [18] [33] [39] [42] [43] [44] [46] [47] [58]
[59] [61] [96] [189] [17] [45] [16] [21] [22])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccent.mf
 Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exsign.mf
 Ok [24] [34] [35] [36] [37] [64] [191] [159])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlig.mf
 Ok [25] [26] [28] [27] [29] [30] [31])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exromp.mf
 Ok [38] [63] [190])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrulett.mf
 Ok [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78]
[79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrllett.mf
 Ok [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108]
[109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120]
[121] [122])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrdigit.mf
 Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrligtb.mf
 Ok) ) ) )
Font metrics written on ecbx1200.tfm.
Output written on ecbx1200.600gf (256 characters, 59220 bytes).
Transcript written on ecbx1200.log.
mktexpk: /build/kissplice-2.6.2/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ecbx1200.600pk: successfully generated.
 </build/kissplice-2.6.2/debian/.debhelper/generated/
_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ecbx1200.600pk>

kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 ectt1440
[ 18%] Building CXX object modules/CMakeFiles/ks_print_bcc.dir/Utils.cpp.o
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/modules && /usr/bin/c++   -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=gnu++11 -MD -MT modules/CMakeFiles/ks_print_bcc.dir/Utils.cpp.o -MF CMakeFiles/ks_print_bcc.dir/Utils.cpp.o.d -o CMakeFiles/ks_print_bcc.dir/Utils.cpp.o -c /build/kissplice-2.6.2/modules/Utils.cpp
[ 20%] Building CXX object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.cpp.o
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/c++ -DCLASSICAL_SPANNING -I/build/kissplice-2.6.2/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fopenmp -std=gnu++11 -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.cpp.o -MF CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.cpp.o.d -o CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.cpp.o -c /build/kissplice-2.6.2/thirdparty/kissreads/src/interface_libchash.cpp
mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input ectt1440
This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf)

(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ectt1440.mf
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf)
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ectt.mf
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exroman.mf
 Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf
 Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expseudo.mf
 Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exruwest.mf
 Ok [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203]
[204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215]
[216] [217] [218] [219] [220] [221] [222] [223])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlwest.mf
 Ok [224][ 22%] Building CXX object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.cpp.o
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/c++ -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -I/build/kissplice-2.6.2/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fopenmp -std=gnu++11 -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.cpp.o -MF CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.cpp.o.d -o CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.cpp.o -c /build/kissplice-2.6.2/thirdparty/kissreads/src/interface_libchash.cpp
 [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235]
[236] [237] [238] [239] [240] [241] [242] [243] [244] [245] [246] [247]
[248] [249] [250] [251] [252] [253] [254] [255])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrueast.mf
 Ok [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139]
[140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151]
[152] [153] [154] [155] [156] [157])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrleast.mf
 Ok [158] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170]
[171]In file included from /build/kissplice-2.6.2/modules/BubbleEnumeration.cpp:61:
/build/kissplice-2.6.2/modules/BubbleEnumeration.h: In function 'bool read_edges_and_nodes_withoptimIO(char*, char*, char*, char*, char*, int*, TEdgeFunctor, TNodeFunctor&) [with TEdgeFunctor = EdgeLoader; TNodeFunctor = NodeLoader]':
/build/kissplice-2.6.2/modules/BubbleEnumeration.h:84:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
   84 |   fscanf(info_file, "%d \n",&bcc_size );
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/BubbleEnumeration.h:85:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
   85 |   fscanf(info_file, "%d \n",&records_per_file );
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 [172] [173]In file included from /build/kissplice-2.6.2/modules/BubbleEnumeration.cpp:60:
/build/kissplice-2.6.2/modules/CGraph.h: In function 'bool read_node_noncontigous_file_withoptimIO(FILE*, FILE*, int*, int*, TFunctor&) [with TFunctor = NodeLoader]':
/build/kissplice-2.6.2/modules/CGraph.h:235:68: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  235 |   for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file_node);
      |                                                               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/CGraph.h:236:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
  236 |   fscanf(contents_file_node, "%d \n",&written_lines_before );
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/CGraph.h:237:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
  237 |   fscanf(contents_file_node, "%d \n",&written_lines_for_record );
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/CGraph.h:248:58: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  248 |     for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, node_file);
      |                                                     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/CGraph.h: In member function 'void NodeLoader::operator()(FILE*, int)':
/build/kissplice-2.6.2/modules/CGraph.h:198:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  198 |       fgets(buffer, 100 * MAX, node_file);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 [174] [175] [176] [177]/build/kissplice-2.6.2/modules/CGraph.h: In function 'void read_edge_file_withoptimIO(FILE*, FILE*, int*, int*, TFunctor&) [with TFunctor = EdgeLoader]':
/build/kissplice-2.6.2/modules/CGraph.h:313:68: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  313 |   for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file_edge);
      |                                                               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/CGraph.h:314:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
  314 |   fscanf(contents_file_edge, "%d \n",&written_lines_before );
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/CGraph.h:315:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
  315 |   fscanf(contents_file_edge, "%d \n",&written_lines_for_record );
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/CGraph.h:322:56: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  322 |   for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, edge_file);
      |                                                   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 [178] [179] [180]/build/kissplice-2.6.2/modules/CGraph.h: In member function 'void EdgeLoader::operator()(FILE*, int)':
/build/kissplice-2.6.2/modules/CGraph.h:277:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  277 |         fgets(buffer, 100 * MAX, edge_file);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 [181] [182]
[183] [184] [185] [186] [187] [188])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbraces.mf
 Ok [94] [126] [23] [40] [41] [60] [124] [62] [91] [93] [92] [123] [125]
[95] [127] [32])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expunct.mf
 Ok [14] [15] [19] [20] [13] [18] [33] [39] [42] [43] [44] [46] [47] [58]
[59] [61] [96] [189] [17] [45] [16] [21] [22])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccent.mf
 Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exsign.mf
 Ok [24] [34] [35] [36] [37] [64] [191] [159])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlig.mf
 Ok [25] [26] [28] [27] [29] [30] [31])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exromp.mf
 Ok [38] [63] [190])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrulett.mf
 Ok [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78]
[79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrllett.mf
 Ok [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108]
[109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120]
[121] [122])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrdigit.mf
 Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exmligtb.mf
 Ok) ) ) )
Font metrics written on ectt1440.tfm.
Output written on ectt1440.600gf (256 characters, 61024 bytes).
Transcript written on ectt1440.log.
mktexpk: /build/kissplice-2.6.2/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ectt1440.600pk: successfully generated.
 </build/kissplice-2.6.2/debian/.debhelper/generated/_source/home/.texlive2022/
texmf-var/fonts/pk/ljfour/jknappen/ec/ectt1440.600pk>
kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 ectt1095
[ 24%] Building CXX object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/libchash.cpp.o
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/c++ -DCLASSICAL_SPANNING -I/build/kissplice-2.6.2/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fopenmp -std=gnu++11 -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/libchash.cpp.o -MF CMakeFiles/ks_kissreadsSNPS.dir/libchash.cpp.o.d -o CMakeFiles/ks_kissreadsSNPS.dir/libchash.cpp.o -c /build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp
[ 25%] Building CXX object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/libchash.cpp.o
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/c++ -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -I/build/kissplice-2.6.2/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fopenmp -std=gnu++11 -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/libchash.cpp.o -MF CMakeFiles/ks_kissreadsSplice.dir/libchash.cpp.o.d -o CMakeFiles/ks_kissreadsSplice.dir/libchash.cpp.o -c /build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp
[ 27%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/modules && /usr/bin/c++   -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=gnu++11 -MD -MT modules/CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o -MF CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o.d -o CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o -c /build/kissplice-2.6.2/modules/CycleCompression.cpp
mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input ectt1095
This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf)

(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ectt1095.mf
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf)
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ectt.mf
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exroman.mf
 Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf
 Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expseudo.mf
 Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exruwest.mf
 Ok [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203]
[204] [205] [206] [207] [208] [209] [210]/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp: In function 'HTItem* SparseNextBucket(SparseIterator*)':
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:580:44: warning: comparison of integer expressions of different signedness: 'long int' and 'u_long' {aka 'long unsigned int'} [-Wsign-compare]
  580 |    for ( iter->posGroup++;  iter->posGroup < SPARSE_GROUPS(iter->cBuckets);
      |                                            ^
 [211] [212] [213] [214] [215]
[216] [217] [218] [219] [220] [221] [222] [223])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlwest.mf
 Ok [224] [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235]
[236] [237] [238] [239]/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp: In function 'HTItem* HashFind(HashTable*, u_long)':
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  193 |       fread(&_ul, sizeof(_ul), 1, (fp));   \
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:220:7: note: in expansion of macro 'READ_UL'
  220 |       READ_UL((ht)->fpData, cchData);                                         \
      |       ^~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:1074:4: note: in expansion of macro 'LOAD_AND_RETURN'
 1074 |    LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL));
      |    ^~~~~~~~~~~~~~~
 [240] [241] [242] [243] [244] [245] [246] [247]/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp: In function 'HTItem* HashFindLast(HashTable*)':
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  193 |       fread(&_ul, sizeof(_ul), 1, (fp));   \
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:220:7: note: in expansion of macro 'READ_UL'
  220 |       READ_UL((ht)->fpData, cchData);                                         \
      |       ^~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:1079:4: note: in expansion of macro 'LOAD_AND_RETURN'
 1079 |    LOAD_AND_RETURN(ht, ht->posLastFind);
      |    ^~~~~~~~~~~~~~~

[248] [249]/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp: In function 'HTItem* HashFirstBucket(HashTable*)':
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  193 |       fread(&_ul, sizeof(_ul), 1, (fp));   \
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:220:7: note: in expansion of macro 'READ_UL'
  220 |       READ_UL((ht)->fpData, cchData);                                         \
      |       ^~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:1142:15: note: in expansion of macro 'LOAD_AND_RETURN'
 1142 |               LOAD_AND_RETURN(ht, retval);
      |               ^~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp: In function 'HTItem* HashNextBucket(HashTable*)':
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  193 |       fread(&_ul, sizeof(_ul), 1, (fp));   \
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:220:7: note: in expansion of macro 'READ_UL'
  220 |       READ_UL((ht)->fpData, cchData);                                         \
      |       ^~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:1154:15: note: in expansion of macro 'LOAD_AND_RETURN'
 1154 |               LOAD_AND_RETURN(ht, retval);
      |               ^~~~~~~~~~~~~~~
 [250] [251] [252/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp: In function 'HashTable* HashDoLoad(FILE*, char* (*)(FILE*, int), HashTable*)':
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:1263:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1263 |    fread(szMagicKey, 1, 4, fp);
      |    ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  193 |       fread(&_ul, sizeof(_ul), 1, (fp));   \
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:1272:4: note: in expansion of macro 'READ_UL'
 1272 |    READ_UL(fp, ht->cchKey);
      |    ^~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  193 |       fread(&_ul, sizeof(_ul), 1, (fp));   \
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:1273:4: note: in expansion of macro 'READ_UL'
 1273 |    READ_UL(fp, ht->cItems);
      |    ^~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  193 |       fread(&_ul, sizeof(_ul), 1, (fp));   \
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:1274:4: note: in expansion of macro 'READ_UL'
 1274 |    READ_UL(fp, ht->cDeletedItems);
      |    ^~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  193 |       fread(&_ul, sizeof(_ul), 1, (fp));   \
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:1277:4: note: in expansion of macro 'READ_UL'
 1277 |    READ_UL(fp, cchKey);
      |    ^~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:1279:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1279 |    fread(rgchKeys, 1, cchKey, fp);
      |    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  193 |       fread(&_ul, sizeof(_ul), 1, (fp));   \
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:1284:7: note: in expansion of macro 'READ_UL'
 1284 |       READ_UL(fp, bck->data);        /* all we need if dataRead is NULL */
      |       ^~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp: In function 'u_long SparseRead(FILE*, SparseBin**)':
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  193 |       fread(&_ul, sizeof(_ul), 1, (fp));   \
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:620:4: note: in expansion of macro 'READ_UL'
  620 |    READ_UL(fp, cBuckets);                /* actually, cBuckets is stored */
      |    ^~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  193 |       fread(&_ul, sizeof(_ul), 1, (fp));   \
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:625:10: note: in expansion of macro 'READ_UL'
  625 |          READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]);
      |          ^~~~~~~
] [253] [254] [255])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrueast.mf
 Ok [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139]
[140] [141]/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp: In function 'HTItem* SparseNextBucket(SparseIterator*)':
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:580:44: warning: comparison of integer expressions of different signedness: 'long int' and 'u_long' {aka 'long unsigned int'} [-Wsign-compare]
  580 |    for ( iter->posGroup++;  iter->posGroup < SPARSE_GROUPS(iter->cBuckets);
      |                                            ^
 [142] [143] [144] [145] [146] [147] [148] [149] [150] [151]
[152] [153] [154] [155] [156] [157])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrleast.mf
 Ok [158] [160] [161] [162] [163] [164]/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp: In function 'HTItem* HashFind(HashTable*, u_long)':
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  193 |       fread(&_ul, sizeof(_ul), 1, (fp));   \
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:220:7: note: in expansion of macro 'READ_UL'
  220 |       READ_UL((ht)->fpData, cchData);                                         \
      |       ^~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:1074:4: note: in expansion of macro 'LOAD_AND_RETURN'
 1074 |    LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL));
      |    ^~~~~~~~~~~~~~~
 [165] [166] [167]/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp: In function 'HTItem* HashFindLast(HashTable*)':
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  193 |       fread(&_ul, sizeof(_ul), 1, (fp));   \
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:220:7: note: in expansion of macro 'READ_UL'
  220 |       READ_UL((ht)->fpData, cchData);                                         \
      |       ^~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:1079:4: note: in expansion of macro 'LOAD_AND_RETURN'
 1079 |    LOAD_AND_RETURN(ht, ht->posLastFind);
      |    ^~~~~~~~~~~~~~~
 [168] [169]/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp: In function 'HTItem* HashFirstBucket(HashTable*)':
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  193 |       fread(&_ul, sizeof(_ul), 1, (fp));   \
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:220:7: note: in expansion of macro 'READ_UL'
  220 |       READ_UL((ht)->fpData, cchData);                                         \
      |       ^~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:1142:15: note: in expansion of macro 'LOAD_AND_RETURN'
 1142 |               LOAD_AND_RETURN(ht, retval);
      |               ^~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp: In function 'HTItem* HashNextBucket(HashTable*)':
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  193 |       fread(&_ul, sizeof(_ul), 1, (fp));   \
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:220:7: note: in expansion of macro 'READ_UL'
  220 |       READ_UL((ht)->fpData, cchData);                                         \
      |       ^~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:1154:15: note: in expansion of macro 'LOAD_AND_RETURN'
 1154 |               LOAD_AND_RETURN(ht, retval);
      |               ^~~~~~~~~~~~~~~
 [170]
[171] [172]/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp: In function 'HashTable* HashDoLoad(FILE*, char* (*)(FILE*, int), HashTable*)':
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:1263:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1263 |    fread(szMagicKey, 1, 4, fp);
      |    ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  193 |       fread(&_ul, sizeof(_ul), 1, (fp));   \
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:1272:4: note: in expansion of macro 'READ_UL'
 1272 |    READ_UL(fp, ht->cchKey);
      |    ^~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  193 |       fread(&_ul, sizeof(_ul), 1, (fp));   \
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:1273:4: note: in expansion of macro 'READ_UL'
 1273 |    READ_UL(fp, ht->cItems);
      |    ^~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  193 |       fread(&_ul, sizeof(_ul), 1, (fp));   \
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:1274:4: note: in expansion of macro 'READ_UL'
 1274 |    READ_UL(fp, ht->cDeletedItems);
      |    ^~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  193 |       fread(&_ul, sizeof(_ul), 1, (fp));   \
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:1277:4: note: in expansion of macro 'READ_UL'
 1277 |    READ_UL(fp, cchKey);
      |    ^~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:1279:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1279 |    fread(rgchKeys, 1, cchKey, fp);
      |    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  193 |       fread(&_ul, sizeof(_ul), 1, (fp));   \
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:1284:7: note: in expansion of macro 'READ_UL'
 1284 |       READ_UL(fp, bck->data);        /* all we need if dataRead is NULL */
      |       ^~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp: In function 'u_long SparseRead(FILE*, SparseBin**)':
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  193 |       fread(&_ul, sizeof(_ul), 1, (fp));   \
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:620:4: note: in expansion of macro 'READ_UL'
  620 |    READ_UL(fp, cBuckets);                /* actually, cBuckets is stored */
      |    ^~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  193 |       fread(&_ul, sizeof(_ul), 1, (fp));   \
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/libchash.cpp:625:10: note: in expansion of macro 'READ_UL'
  625 |          READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]);
      |          ^~~~~~~
 [173] [174] [175] [176] [177] [178] [179] [180] [181] [182]
[183] [184] [185] [186] [187] [188])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbraces.mf
 Ok [94] [126] [23] [40] [41] [60] [124] [62] [91] [93] [92] [123] [125]
[95] [127] [32])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expunct.mf
 Ok [14] [15] [19] [20] [13] [18] [33] [39] [42] [43] [44] [46] [47] [58]
[59] [61] [96] [189] [17] [45] [16] [21] [22])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccent.mf
 Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exsign.mf
 Ok [24] [34] [35] [36] [37] [64] [191] [159])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlig.mf
 Ok [25] [26] [28] [27] [29] [30] [31])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exromp.mf
 Ok [38] [63] [190])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrulett.mf
 Ok [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78]
[79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrllett.mf
 Ok [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108]
[109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120]
[121] [122])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrdigit.mf
 Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exmligtb.mf
 Ok) ) ) )
Font metrics written on ectt1095.tfm.
Output written on ectt1095.600gf (256 characters, 47796 bytes).
Transcript written on ectt1095.log.
mktexpk: /build/kissplice-2.6.2/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ectt1095.600pk: successfully generated.
 </build/kissplice-2.6.2/d
ebian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/
jknappen/ec/ectt1095.600pk>
kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 ecbx1440
[ 29%] Building CXX object modules/CMakeFiles/ks_error_removal.dir/LabelledCEdge.cpp.o
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/modules && /usr/bin/c++   -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=gnu++11 -MD -MT modules/CMakeFiles/ks_error_removal.dir/LabelledCEdge.cpp.o -MF CMakeFiles/ks_error_removal.dir/LabelledCEdge.cpp.o.d -o CMakeFiles/ks_error_removal.dir/LabelledCEdge.cpp.o -c /build/kissplice-2.6.2/modules/LabelledCEdge.cpp
[ 31%] Linking CXX executable ../lib/kissplice/ks_print_bcc
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_print_bcc.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o CMakeFiles/ks_print_bcc.dir/Utils.cpp.o -o ../lib/kissplice/ks_print_bcc 
mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input ecbx1440
This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf)

(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecbx1440.mf
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf)
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecbx.mf
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exroman.mf
 Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf
 Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expseudo.mf
 Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exruwest.mf
 Ok [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203]make[3]: Leaving directory '/build/kissplice-2.6.2/obj-aarch64-linux-gnu'

[204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215]
[216] [217][ 31%] Built target ks_print_bcc
 [218] [219] [220] [221] [222] [223])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlwest.mf
 Ok [224] [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235][ 32%] Building CXX object modules/CMakeFiles/ks_error_removal.dir/Utils.cpp.o

[236]cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/modules && /usr/bin/c++   -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=gnu++11 -MD -MT modules/CMakeFiles/ks_error_removal.dir/Utils.cpp.o -MF CMakeFiles/ks_error_removal.dir/Utils.cpp.o.d -o CMakeFiles/ks_error_removal.dir/Utils.cpp.o -c /build/kissplice-2.6.2/modules/Utils.cpp
 [237] [238] [239] [240] [241] [242] [243] [244] [245] [246] [247]
[248] [249] [250] [251] [252] [253] [254] [255])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrueast.mf
 Ok [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139]
[140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151]
[152] [153] [154] [155] [156] [157])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrleast.mf
 Ok [158] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170]
[171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182]
[183] [184] [185] [186] [187] [188])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbraces.mf
 Ok [94] [126] [23] [40] [41] [60] [124] [62] [91] [93] [92] [123] [125]
[95] [127] [32])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expunct.mf
 Ok [14] [15] [19] [20] [13] [18] [33] [39] [42] [43] [44] [46] [47] [58]
[59] [61] [96] [189] [17] [45] [16] [21] [22])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccent.mf
 Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exsign.mf
 Ok [24] [34] [35] [36] [37] [64] [191] [159])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlig.mf
 Ok [25] [26] [28] [27] [29] [30] [31])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exromp.mf
 Ok [38] [63] [190])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrulett.mf
 Ok [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78]
[79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrllett.mf
 Ok [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108]
[109] [110] [111] [112] [113] [114] [115] [116] [117][ 34%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/NGraph.cpp.o
 [118] [119] [120]cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/modules && /usr/bin/c++   -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=gnu++11 -MD -MT modules/CMakeFiles/ks_run_modules.dir/NGraph.cpp.o -MF CMakeFiles/ks_run_modules.dir/NGraph.cpp.o.d -o CMakeFiles/ks_run_modules.dir/NGraph.cpp.o -c /build/kissplice-2.6.2/modules/NGraph.cpp

[121] [122])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrdigit.mf
 Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrligtb.mf
 Ok) ) ) )
(some charht values had to be adjusted by as much as 0.10997pt)
Font metrics written on ecbx1440.tfm.
Output written on ecbx1440.600gf (256 characters, 70764 bytes).
Transcript written on ecbx1440.log.
mktexpk: /build/kissplice-2.6.2/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ecbx1440.600pk: successfully generated.
 </build/kissplice-2.6.2/debian/.debhelper/generated
/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ecbx1440.600pk
>
kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 ecti1200
mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input ecti1200
This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf)

(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecti1200.mf
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf)
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecti.mf
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/extextit.mf
 Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf
 Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expseudo.mf
 Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exileast.mf
 Ok [158] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170]
[171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182]
[183] [184] [185] [186] [187] [188])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exilwest.mf
 Ok [224] [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235]
[236] [237] [238] [239] [240] [241] [242] [243] [244] [245] [246] [247]
[248] [249] [250] [251] [252] [253] [254] [255])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exruwest.mf
 Ok [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203]
[204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215]
[216] [217] [218] [219] [220] [221] [222] [223])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrueast.mf
 Ok [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139]
[140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151]
[152][ 36%] Building CXX object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/outputs.cpp.o
 [153] [154]cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/c++ -DCLASSICAL_SPANNING -I/build/kissplice-2.6.2/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fopenmp -std=gnu++11 -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/outputs.cpp.o -MF CMakeFiles/ks_kissreadsSNPS.dir/outputs.cpp.o.d -o CMakeFiles/ks_kissreadsSNPS.dir/outputs.cpp.o -c /build/kissplice-2.6.2/thirdparty/kissreads/src/outputs.cpp
 [155] [156] [157])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbraces.mf
 Ok [94] [126] [23] [40] [41] [60] [124] [62] [91] [93] [92] [123] [125]
[95] [127] [32])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expunct.mf
 Ok [14] [15] [19] [20] [13] [18] [33] [39] [42] [43] [44] [46] [47] [58]
[59] [61] [96] [189] [17] [45] [16] [21] [22])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccent.mf
 Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exsign.mf
 Ok [24] [34] [35] [36] [37] [64] [191] [159])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exilig.mf
 Ok [25] [26] [27] [28] [29] [30] [31])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exitalp.mf
 Ok [38] [63] [190])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrulett.mf
 Ok [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78]
[79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exillett.mf
 Ok [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108]
[109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120]
[121] [122])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exidigit.mf
 Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exiligtb.mf
 Ok) ) ) )
(some charht values had to be adjusted by as much as 0.07143pt)
Font metrics written on ecti1200.tfm.
Output written on ecti1200.600gf (256 characters, 63048 bytes).
Transcript written on ecti1200.log.
mktexpk: /build/kissplice-2.6.2/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ecti1200.600pk: successfully generated.
 </build/kissplice-2.6.2/debian/.debhelper/generated/_source/home/.texlive2022
/texmf-var/fonts/pk/ljfour/jknappen/ec/ecti1200.600pk>
kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 ectt1200
[ 37%] Building CXX object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/outputs.cpp.o
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/c++ -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -I/build/kissplice-2.6.2/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fopenmp -std=gnu++11 -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/outputs.cpp.o -MF CMakeFiles/ks_kissreadsSplice.dir/outputs.cpp.o.d -o CMakeFiles/ks_kissreadsSplice.dir/outputs.cpp.o -c /build/kissplice-2.6.2/thirdparty/kissreads/src/outputs.cpp
mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input ectt1200
This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf)

(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ectt1200.mf
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf)
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ectt.mf
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exroman.mf
 Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf
 Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expseudo.mf
 Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exruwest.mf
 Ok [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203]
[204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215]
[216] [217] [218] [219] [220] [221] [222] [223])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlwest.mf
 Ok [224] [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235]
[236] [237] [238] [239] [240] [241] [242] [243] [244] [245] [246] [247]
[248] [249] [250] [251] [252] [253] [254] [255])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrueast.mf
 Ok [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139]
[140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151]
[152] [153] [154] [155] [156] [157])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrleast.mf
 Ok [158] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170]
[171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182]
[183] [184] [185] [186] [187] [188])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbraces.mf
 Ok [94] [126] [23] [40] [41] [60] [124] [62] [91] [93] [92] [123] [125]
[95] [127] [32])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expunct.mf
 Ok [14] [15] [19] [20] [13] [18] [33] [39] [42] [43] [44] [46] [47] [58]
[59] [61] [96] [189] [17] [45] [16] [21] [22])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccent.mf
 Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exsign.mf
 Ok [24] [34] [35] [36] [37] [64] [191] [159])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlig.mf
 Ok [25] [26] [28] [27] [29] [30] [31])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exromp.mf
 Ok [38] [63] [190])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrulett.mf
 Ok [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78]
[79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrllett.mf
 Ok [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108]
[109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120]
[121] [122])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrdigit.mf
 Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exmligtb.mf
 Ok) ) ) )
Font metrics written on ectt1200.tfm.
Output written on ectt1200.600gf (256 characters, 51736 bytes).
Transcript written on ectt1200.log.
[ 39%] Linking CXX executable ../lib/kissplice/ks_error_removal
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_error_removal.dir/link.txt --verbose=1
[ 41%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/CGraph.cpp.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_error_removal.dir/ErrorRemoval.cpp.o CMakeFiles/ks_error_removal.dir/LabelledCEdge.cpp.o CMakeFiles/ks_error_removal.dir/Utils.cpp.o -o ../lib/kissplice/ks_error_removal 
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/modules && /usr/bin/c++   -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=gnu++11 -MD -MT modules/CMakeFiles/ks_run_modules.dir/CGraph.cpp.o -MF CMakeFiles/ks_run_modules.dir/CGraph.cpp.o.d -o CMakeFiles/ks_run_modules.dir/CGraph.cpp.o -c /build/kissplice-2.6.2/modules/CGraph.cpp
mktexpk: /build/kissplice-2.6.2/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ectt1200.600pk: successfully generated.
 </build/kissplice-2.6.2/
debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour
/jknappen/ec/ectt1200.600pk>
kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 ectt1728
make[3]: Leaving directory '/build/kissplice-2.6.2/obj-aarch64-linux-gnu'
/build/kissplice-2.6.2/thirdparty/kissreads/src/outputs.cpp: In function 'void print_quadruplet_i(FILE*, fragment_info* const*, int, int, int)':
/build/kissplice-2.6.2/thirdparty/kissreads/src/outputs.cpp:595:33: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
  595 |             for (j=kmer_size-1;j<=strlen(results_against_set[cycle_id]->w)-kmer_size;j++){
      |                                ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/outputs.cpp: In function 'void print_sequence_i(FILE*, fragment_info* const*, int, int, int)':
/build/kissplice-2.6.2/thirdparty/kissreads/src/outputs.cpp:860:33: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
  860 |             for (j=kmer_size-1;j<=strlen(results_against_set[cycle_id]->w)-kmer_size;j++){
      |                                ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 41%] Built target ks_error_removal
[ 43%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/LabelledCEdge.cpp.o
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/modules && /usr/bin/c++   -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=gnu++11 -MD -MT modules/CMakeFiles/ks_run_modules.dir/LabelledCEdge.cpp.o -MF CMakeFiles/ks_run_modules.dir/LabelledCEdge.cpp.o.d -o CMakeFiles/ks_run_modules.dir/LabelledCEdge.cpp.o -c /build/kissplice-2.6.2/modules/LabelledCEdge.cpp
/build/kissplice-2.6.2/thirdparty/kissreads/src/outputs.cpp: In function 'void print_quadruplet_i(FILE*, fragment_info* const*, int, int, int)':
/build/kissplice-2.6.2/thirdparty/kissreads/src/outputs.cpp:595:33: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
  595 |             for (j=kmer_size-1;j<=strlen(results_against_set[cycle_id]->w)-kmer_size;j++){
      |                                ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/outputs.cpp: In function 'void print_sequence_i(FILE*, fragment_info* const*, int, int, int)':
/build/kissplice-2.6.2/thirdparty/kissreads/src/outputs.cpp:860:33: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
  860 |             for (j=kmer_size-1;j<=strlen(results_against_set[cycle_id]->w)-kmer_size;j++){
      |                                ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input ectt1728
This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf)

(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ectt1728.mf
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf)
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ectt.mf
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exroman.mf
 Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf
 Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expseudo.mf
 Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exruwest.mf
 Ok [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203]
[204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215]
[216] [217] [218] [219] [220] [221] [222] [223])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlwest.mf
 Ok [224] [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235]
[236] [237] [238] [239] [240] [241] [242] [243] [244] [245] [246] [247]
[248] [249] [250] [251] [252] [253] [254] [255])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrueast.mf
 Ok [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139]
[140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151]
[152] [153] [154] [155] [156] [157])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrleast.mf
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[171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182]
[183] [184] [185] [186] [187] [188])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbraces.mf
 Ok [94] [126] [23] [40] [41] [60] [124] [62] [91] [93] [92] [123] [125]
[95] [127] [32])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expunct.mf
 Ok [14] [15] [19] [20] [13] [18] [33] [39] [42] [43] [44] [46] [47] [58]
[59] [61] [96] [189] [17] [45] [16] [21] [22])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccent.mf
 Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exsign.mf
 Ok [24] [34] [35] [36] [37] [64] [191] [159])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlig.mf
 Ok [25] [26] [28] [27] [29] [30] [31])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exromp.mf
 Ok [38] [63] [190])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrulett.mf
 Ok [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78]
[79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrllett.mf
 Ok [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108]
[109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120]
[121] [122])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrdigit.mf
 Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exmligtb.mf
 Ok) ) ) )
Font metrics written on ectt1728.tfm.
Output written on ectt1728.600gf (256 characters, 72884 bytes).
Transcript written on ectt1728.log.
mktexpk: /build/kissplice-2.6.2/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ectt1728.600pk: successfully generated.
 </build/kissplice-2.6.2/debian/.debhelper/generate
d/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ectt1728.600p
k>
kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 ecrm1200
[ 44%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/SplitBcc.cpp.o
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/modules && /usr/bin/c++   -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=gnu++11 -MD -MT modules/CMakeFiles/ks_run_modules.dir/SplitBcc.cpp.o -MF CMakeFiles/ks_run_modules.dir/SplitBcc.cpp.o.d -o CMakeFiles/ks_run_modules.dir/SplitBcc.cpp.o -c /build/kissplice-2.6.2/modules/SplitBcc.cpp
[ 46%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/CycleCompression.cpp.o
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/modules && /usr/bin/c++   -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=gnu++11 -MD -MT modules/CMakeFiles/ks_clean_duplicates.dir/CycleCompression.cpp.o -MF CMakeFiles/ks_clean_duplicates.dir/CycleCompression.cpp.o.d -o CMakeFiles/ks_clean_duplicates.dir/CycleCompression.cpp.o -c /build/kissplice-2.6.2/modules/CycleCompression.cpp
mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input ecrm1200
This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf)

(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecrm1200.mf
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf)
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecrm.mf
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exroman.mf
 Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf
 Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expseudo.mf
 Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exruwest.mf
 Ok [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203]
[204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215]
[216] [217] [218] [219] [220] [221] [222] [223])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlwest.mf
 Ok [224] [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235]
[236] [237] [238] [239] [240] [241] [242] [243] [244] [245] [246] [247]
[248] [249] [250] [251] [252] [253] [254] [255])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrueast.mf
 Ok [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139]
[140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151]
[152] [153] [154] [155] [156] [157])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrleast.mf
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[171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182]
[183] [184] [185] [186] [187] [188])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbraces.mf
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[95] [127] [32])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expunct.mf
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[59] [61] [96] [189] [17] [45] [16] [21] [22])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccent.mf
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(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exsign.mf
 Ok [24] [34] [35] [36] [37] [64] [191] [159])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlig.mf
 Ok [25] [26] [28] [27] [29] [30] [31])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exromp.mf
 Ok [38] [63] [190])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrulett.mf
 Ok [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78]
[79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrllett.mf
 Ok [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108]
[109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120]
[121] [122])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrdigit.mf
 Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrligtb.mf
 Ok) ) ) )
(some charht values had to be adjusted by as much as 0.07143pt)
Font metrics written on ecrm1200.tfm.
Output written on ecrm1200.600gf (256 characters, 60320 bytes).
Transcript written on ecrm1200.log.
mktexpk: /build/kissplice-2.6.2/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ecrm1200.600pk: successfully generated.
 </build/kissplice-2.6.2/debian/.debhelper/generated/_source/home/.texlive202
2/texmf-var/fonts/pk/ljfour/jknappen/ec/ecrm1200.600pk>
kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 ecbx1728
/build/kissplice-2.6.2/modules/NGraph.cpp: In function 'void read_graph_edges_new(NGraph&, FILE*, FILE*, FILE*, int*, int*)':
/build/kissplice-2.6.2/modules/NGraph.cpp:1032:68: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1032 |   for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file);
      |                                                               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/NGraph.cpp:1033:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1033 |   fscanf(contents_file, "%d \n",&written_lines_before );
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/NGraph.cpp:1034:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1034 |   fscanf(contents_file, "%d \n",&written_lines_for_record );
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/NGraph.cpp:1043:56: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1043 |   for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, data_file);
      |                                                   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/NGraph.cpp:1047:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1047 |     fgets(buffer, 100 * MAX, data_file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/NGraph.cpp: In function 'void read_graph_nodes_new(NGraph&, FILE*, FILE*, FILE*, int*, int*)':
/build/kissplice-2.6.2/modules/NGraph.cpp:1079:68: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1079 |   for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file);
      |                                                               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/NGraph.cpp:1080:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1080 |   fscanf(contents_file, "%d \n",&written_lines_before );
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/NGraph.cpp:1081:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1081 |   fscanf(contents_file, "%d \n",&written_lines_for_record );
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/NGraph.cpp:1090:58: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1090 |   for (int i = 0; i < written_lines_before ; i++) { fgets(buffer, 100 * MAX, data_file); }
      |                                                     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/NGraph.cpp:1094:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1094 |     fgets(buffer, 100 * MAX, data_file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 48%] Building CXX object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/coherent_algorithm.cpp.o
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/c++ -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -I/build/kissplice-2.6.2/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fopenmp -std=gnu++11 -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/coherent_algorithm.cpp.o -MF CMakeFiles/ks_kissreadsSplice.dir/coherent_algorithm.cpp.o.d -o CMakeFiles/ks_kissreadsSplice.dir/coherent_algorithm.cpp.o -c /build/kissplice-2.6.2/thirdparty/kissreads/src/coherent_algorithm.cpp
mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input ecbx1728
This is METAFONT, Version 2.71828182 (TeX Live 2022/Debian) (preloaded base=mf)
[ 50%] Building CXX object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/coherent_algorithm.cpp.o
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/c++ -DCLASSICAL_SPANNING -I/build/kissplice-2.6.2/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fopenmp -std=gnu++11 -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/coherent_algorithm.cpp.o -MF CMakeFiles/ks_kissreadsSNPS.dir/coherent_algorithm.cpp.o.d -o CMakeFiles/ks_kissreadsSNPS.dir/coherent_algorithm.cpp.o -c /build/kissplice-2.6.2/thirdparty/kissreads/src/coherent_algorithm.cpp

(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecbx1728.mf
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf)
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/ecbx.mf
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exroman.mf
 Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf
 Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expseudo.mf
 Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exruwest.mf
 Ok [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203]
[204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215]
[216] [217] [218] [219] [220] [221] [222] [223])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlwest.mf
 Ok [224] [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235]
[236] [237] [238] [239] [240] [241] [242] [243] [244] [245] [246] [247]
[248] [249] [250] [251] [252] [253] [254] [255])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrueast.mf
 Ok [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139]
[140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151]
[152] [153] [154] [155] [156] [157])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrleast.mf
 Ok [158] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170]
[171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182]
[183] [184] [185] [186] [187] [188])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbraces.mf
 Ok [94] [126] [23] [40] [41] [60] [124] [62] [91] [93] [92] [123] [125]
[95] [127] [32])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expunct.mf
 Ok [14] [15] [19] [20] [13] [18] [33] [39] [42] [43] [44] [46] [47] [58]
[59] [61] [96] [189] [17] [45] [16] [21] [22])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccent.mf
 Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exsign.mf
 Ok [24] [34] [35] [36] [37] [64] [191] [159])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlig.mf
 Ok [25] [26] [28] [27] [29] [30] [31])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exromp.mf
 Ok [38] [63] [190])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrulett.mf
 Ok [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78]
[79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrllett.mf
 Ok [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108]
[109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120]
[121] [122])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrdigit.mf
 Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrligtb.mf
 Ok) ) ) )
(some charht values had to be adjusted by as much as 0.13197pt)
Font metrics written on ecbx1728.tfm.
Output written on ecbx1728.600gf (256 characters, 84848 bytes).
Transcript written on ecbx1728.log.
mktexpk: /build/kissplice-2.6.2/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ecbx1728.600pk: successfully generated.
 </build/kissplice-2.6.2
/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfou
r/jknappen/ec/ecbx1728.600pk>
kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 ecrm1440
[ 53%] Building CXX object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/couple.cpp.o
[ 51%] Building CXX object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/couple.cpp.o
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/c++ -DCLASSICAL_SPANNING -I/build/kissplice-2.6.2/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fopenmp -std=gnu++11 -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/couple.cpp.o -MF CMakeFiles/ks_kissreadsSNPS.dir/couple.cpp.o.d -o CMakeFiles/ks_kissreadsSNPS.dir/couple.cpp.o -c /build/kissplice-2.6.2/thirdparty/kissreads/src/couple.cpp
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/c++ -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -I/build/kissplice-2.6.2/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fopenmp -std=gnu++11 -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/couple.cpp.o -MF CMakeFiles/ks_kissreadsSplice.dir/couple.cpp.o.d -o CMakeFiles/ks_kissreadsSplice.dir/couple.cpp.o -c /build/kissplice-2.6.2/thirdparty/kissreads/src/couple.cpp
[ 55%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/Utils.cpp.o
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/modules && /usr/bin/c++   -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=gnu++11 -MD -MT modules/CMakeFiles/ks_run_modules.dir/Utils.cpp.o -MF CMakeFiles/ks_run_modules.dir/Utils.cpp.o.d -o CMakeFiles/ks_run_modules.dir/Utils.cpp.o -c /build/kissplice-2.6.2/modules/Utils.cpp
[ 56%] Building CXX object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/fragment_index.cpp.o
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/c++ -DCLASSICAL_SPANNING -I/build/kissplice-2.6.2/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fopenmp -std=gnu++11 -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/fragment_index.cpp.o -MF CMakeFiles/ks_kissreadsSNPS.dir/fragment_index.cpp.o.d -o CMakeFiles/ks_kissreadsSNPS.dir/fragment_index.cpp.o -c /build/kissplice-2.6.2/thirdparty/kissreads/src/fragment_index.cpp
[ 58%] Building CXX object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/fragment_index.cpp.o
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/c++ -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -I/build/kissplice-2.6.2/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fopenmp -std=gnu++11 -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/fragment_index.cpp.o -MF CMakeFiles/ks_kissreadsSplice.dir/fragment_index.cpp.o.d -o CMakeFiles/ks_kissreadsSplice.dir/fragment_index.cpp.o -c /build/kissplice-2.6.2/thirdparty/kissreads/src/fragment_index.cpp
mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input ecrm1440
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[79] [80] [81] [82] [83] [84] [85] [86] [87][ 60%] Building CXX object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/kissReads.cpp.o
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(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrllett.mfcd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/c++ -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -I/build/kissplice-2.6.2/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fopenmp -std=gnu++11 -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/kissReads.cpp.o -MF CMakeFiles/ks_kissreadsSplice.dir/kissReads.cpp.o.d -o CMakeFiles/ks_kissreadsSplice.dir/kissReads.cpp.o -c /build/kissplice-2.6.2/thirdparty/kissreads/src/kissReads.cpp

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 Ok) ) ) )
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mktexpk: /build/kissplice-2.6.2/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ecrm1440.600pk: successfully generated.
 </build/kissplice-2.6.2/debian/.debhelper/generat
ed/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ecrm1440.600
pk>
kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 ecrm2074
[ 62%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/NGraph.cpp.o
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/modules && /usr/bin/c++   -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=gnu++11 -MD -MT modules/CMakeFiles/ks_clean_duplicates.dir/NGraph.cpp.o -MF CMakeFiles/ks_clean_duplicates.dir/NGraph.cpp.o.d -o CMakeFiles/ks_clean_duplicates.dir/NGraph.cpp.o -c /build/kissplice-2.6.2/modules/NGraph.cpp
/build/kissplice-2.6.2/thirdparty/kissreads/src/fragment_index.cpp: In function 'char* strdup_upper_case(char*)':
/build/kissplice-2.6.2/thirdparty/kissreads/src/fragment_index.cpp:96:14: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
   96 |     for(i=0;i<strlen(in);i++) if(in[i]>='A' && in[i]<='Z') count++;
      |             ~^~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/fragment_index.cpp:99:14: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
   99 |     for(i=0;i<strlen(in);i++) if(in[i]>='A' && in[i]<='Z') temp[j++]=in[i];
      |             ~^~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/fragment_index.cpp: In function 'char* strdup_first_lower(char*)':
/build/kissplice-2.6.2/thirdparty/kissreads/src/fragment_index.cpp:109:14: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
  109 |     for(i=0;i<strlen(in);i++)
      |             ~^~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/fragment_index.cpp:114:14: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
  114 |     for(i=0;i<strlen(in);i++)
      |             ~^~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/fragment_index.cpp: In function 'fragment_info** index_starters_from_input_file(int, int, int, char, int)':
/build/kissplice-2.6.2/thirdparty/kissreads/src/fragment_index.cpp:228:34: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
  228 |                         for(z=0;z<strlen(all_starters[fragment_id]->w); z++) all_starters[fragment_id]->read_coherent_positions[i][z]=0;
      |                                 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/fragment_index.cpp:229:34: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
  229 |                         for(z=0;z<strlen(all_starters[fragment_id]->w); z++) all_starters[fragment_id]->read_coherent_positions[i][z]=0;
      |                                 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/fragment_index.cpp:230:34: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
  230 |                         for(z=0;z<strlen(all_starters[fragment_id]->w); z++) all_starters[fragment_id]->sum_quality_per_position[i][z]=0;
      |                                 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/fragment_index.cpp:155:15: warning: unused variable 'j' [-Wunused-variable]
  155 |         int i,j,z,stop;
      |               ^
/build/kissplice-2.6.2/thirdparty/kissreads/src/fragment_index.cpp:156:14: warning: unused variable 'validSeed' [-Wunused-variable]
  156 |         char validSeed;
      |              ^~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/fragment_index.cpp: In function 'char* strdup_upper_case(char*)':
/build/kissplice-2.6.2/thirdparty/kissreads/src/fragment_index.cpp:96:14: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
   96 |     for(i=0;i<strlen(in);i++) if(in[i]>='A' && in[i]<='Z') count++;
      |             ~^~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/fragment_index.cpp:99:14: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
   99 |     for(i=0;i<strlen(in);i++) if(in[i]>='A' && in[i]<='Z') temp[j++]=in[i];
      |             ~^~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/fragment_index.cpp: In function 'char* strdup_first_lower(char*)':
/build/kissplice-2.6.2/thirdparty/kissreads/src/fragment_index.cpp:109:14: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
  109 |     for(i=0;i<strlen(in);i++)
      |             ~^~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/fragment_index.cpp:114:14: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
  114 |     for(i=0;i<strlen(in);i++)
      |             ~^~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/fragment_index.cpp: In function 'fragment_info** index_starters_from_input_file(int, int, int, char, int)':
/build/kissplice-2.6.2/thirdparty/kissreads/src/fragment_index.cpp:228:34: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
  228 |                         for(z=0;z<strlen(all_starters[fragment_id]->w); z++) all_starters[fragment_id]->read_coherent_positions[i][z]=0;
      |                                 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/fragment_index.cpp:229:34: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
  229 |                         for(z=0;z<strlen(all_starters[fragment_id]->w); z++) all_starters[fragment_id]->read_coherent_positions[i][z]=0;
      |                                 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/fragment_index.cpp:230:34: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
  230 |                         for(z=0;z<strlen(all_starters[fragment_id]->w); z++) all_starters[fragment_id]->sum_quality_per_position[i][z]=0;
      |                                 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/fragment_index.cpp:155:15: warning: unused variable 'j' [-Wunused-variable]
  155 |         int i,j,z,stop;
      |               ^
/build/kissplice-2.6.2/thirdparty/kissreads/src/fragment_index.cpp:156:14: warning: unused variable 'validSeed' [-Wunused-variable]
  156 |         char validSeed;
      |              ^~~~~~~~~
mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input ecrm2074
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[204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215]
[216] [217] [218] [219] [220] [221] [222] [223])
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[236] [237] [238] [239] [240] [241] [242] [243] [244] [245] [246] [247]
[248] [249] [250] [251] [252] [253] [254] [255])
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[140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151]
[152] [153] [154] [155] [156] [157])
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[95] [127] [32])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/expunct.mf
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[59] [61] [96] [189] [17] [45] [16] [21] [22])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccent.mf
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(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exsign.mf
 Ok [24] [34] [35] [36] [37] [64] [191] [159])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrlig.mf
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(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrulett.mf
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[79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrllett.mf
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[109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120]
[121] [122])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrdigit.mf
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(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exrligtb.mf
 Ok) ) ) )
(some charht values had to be adjusted by as much as 0.1171pt)
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Output written on ecrm2074.600gf (256 characters, 101464 bytes).
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mktexpk: /build/kissplice-2.6.2/debian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/jknappen/ec/ecrm2074.600pk: successfully generated.
 </build/kissplice-2.6.2/debian/.debhelper/generated/_source/home/.texlive20
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kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 ectt2074
[ 63%] Building CXX object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/kissReads.cpp.o
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/c++ -DCLASSICAL_SPANNING -I/build/kissplice-2.6.2/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fopenmp -std=gnu++11 -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/kissReads.cpp.o -MF CMakeFiles/ks_kissreadsSNPS.dir/kissReads.cpp.o.d -o CMakeFiles/ks_kissreadsSNPS.dir/kissReads.cpp.o -c /build/kissplice-2.6.2/thirdparty/kissreads/src/kissReads.cpp
mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input ectt2074
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\T1/cmr/m/n/12 If you have ques-tions, please use pri-mar-ily the biostars fo-r
um: $\T1/cmtt/m/n/12 www . biostars . org / t / kissplice/$ 

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ts . gforge . inria . fr / cgi-[]bin / mailman / listinfo /
[2]
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ebian/.debhelper/generated/_source/home/.texlive2022/texmf-var/fonts/pk/ljfour/
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[ 72%] Built target doc
[ 74%] Building CXX object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/Utils.cpp.o
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/c++ -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -I/build/kissplice-2.6.2/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fopenmp -std=gnu++11 -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/Utils.cpp.o -MF CMakeFiles/ks_kissreadsSplice.dir/Utils.cpp.o.d -o CMakeFiles/ks_kissreadsSplice.dir/Utils.cpp.o -c /build/kissplice-2.6.2/thirdparty/kissreads/src/Utils.cpp
[ 75%] Building CXX object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/fragment_info.cpp.o
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/c++ -DCLASSICAL_SPANNING -I/build/kissplice-2.6.2/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fopenmp -std=gnu++11 -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/fragment_info.cpp.o -MF CMakeFiles/ks_kissreadsSNPS.dir/fragment_info.cpp.o.d -o CMakeFiles/ks_kissreadsSNPS.dir/fragment_info.cpp.o -c /build/kissplice-2.6.2/thirdparty/kissreads/src/fragment_info.cpp
/build/kissplice-2.6.2/thirdparty/kissreads/src/kissReads.cpp: In function 'int main(int, char**)':
/build/kissplice-2.6.2/thirdparty/kissreads/src/kissReads.cpp:702:9: warning: 'strandTheLeftReadsMapsTo' may be used uninitialized [-Wmaybe-uninitialized]
  702 |         if (strandTheLeftReadsMapsTo=='-') {
      |         ^~
/build/kissplice-2.6.2/thirdparty/kissreads/src/kissReads.cpp:695:14: note: 'strandTheLeftReadsMapsTo' was declared here
  695 |         char strandTheLeftReadsMapsTo;
      |              ^~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/kissReads.cpp:526:50: warning: 'strandRelativeThreshold' may be used uninitialized [-Wmaybe-uninitialized]
  526 |               (((double)(largestValue)/total) >= strandRelativeThreshold);
      |                                                  ^~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/kissReads.cpp:182:9: note: 'strandRelativeThreshold' was declared here
  182 |   float strandRelativeThreshold;
      |         ^~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/kissReads.cpp:529:11: warning: 'strandAbsoluteThreshold' may be used uninitialized [-Wmaybe-uninitialized]
  529 |           if (!respectsAbsoluteThreshold || !respectsRelativeThreshold)
      |           ^~
/build/kissplice-2.6.2/thirdparty/kissreads/src/kissReads.cpp:181:7: note: 'strandAbsoluteThreshold' was declared here
  181 |   int strandAbsoluteThreshold;
      |       ^~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/NGraph.cpp: In function 'void read_graph_edges_new(NGraph&, FILE*, FILE*, FILE*, int*, int*)':
/build/kissplice-2.6.2/modules/NGraph.cpp:1032:68: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1032 |   for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file);
      |                                                               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/NGraph.cpp:1033:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1033 |   fscanf(contents_file, "%d \n",&written_lines_before );
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/NGraph.cpp:1034:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1034 |   fscanf(contents_file, "%d \n",&written_lines_for_record );
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/NGraph.cpp:1043:56: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1043 |   for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, data_file);
      |                                                   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/NGraph.cpp:1047:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1047 |     fgets(buffer, 100 * MAX, data_file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/NGraph.cpp: In function 'void read_graph_nodes_new(NGraph&, FILE*, FILE*, FILE*, int*, int*)':
/build/kissplice-2.6.2/modules/NGraph.cpp:1079:68: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1079 |   for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file);
      |                                                               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/NGraph.cpp:1080:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1080 |   fscanf(contents_file, "%d \n",&written_lines_before );
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/NGraph.cpp:1081:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1081 |   fscanf(contents_file, "%d \n",&written_lines_for_record );
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/NGraph.cpp:1090:58: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1090 |   for (int i = 0; i < written_lines_before ; i++) { fgets(buffer, 100 * MAX, data_file); }
      |                                                     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/NGraph.cpp:1094:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1094 |     fgets(buffer, 100 * MAX, data_file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 77%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/CycleCompression.cpp.o
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/modules && /usr/bin/c++   -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=gnu++11 -MD -MT modules/CMakeFiles/ks_bubble_enumeration.dir/CycleCompression.cpp.o -MF CMakeFiles/ks_bubble_enumeration.dir/CycleCompression.cpp.o.d -o CMakeFiles/ks_bubble_enumeration.dir/CycleCompression.cpp.o -c /build/kissplice-2.6.2/modules/CycleCompression.cpp
/build/kissplice-2.6.2/thirdparty/kissreads/src/kissReads.cpp: In function 'int main(int, char**)':
/build/kissplice-2.6.2/thirdparty/kissreads/src/kissReads.cpp:702:9: warning: 'strandTheLeftReadsMapsTo' may be used uninitialized [-Wmaybe-uninitialized]
  702 |         if (strandTheLeftReadsMapsTo=='-') {
      |         ^~
/build/kissplice-2.6.2/thirdparty/kissreads/src/kissReads.cpp:695:14: note: 'strandTheLeftReadsMapsTo' was declared here
  695 |         char strandTheLeftReadsMapsTo;
      |              ^~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/kissReads.cpp:526:50: warning: 'strandRelativeThreshold' may be used uninitialized [-Wmaybe-uninitialized]
  526 |               (((double)(largestValue)/total) >= strandRelativeThreshold);
      |                                                  ^~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/kissReads.cpp:182:9: note: 'strandRelativeThreshold' was declared here
  182 |   float strandRelativeThreshold;
      |         ^~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/thirdparty/kissreads/src/kissReads.cpp:529:11: warning: 'strandAbsoluteThreshold' may be used uninitialized [-Wmaybe-uninitialized]
  529 |           if (!respectsAbsoluteThreshold || !respectsRelativeThreshold)
      |           ^~
/build/kissplice-2.6.2/thirdparty/kissreads/src/kissReads.cpp:181:7: note: 'strandAbsoluteThreshold' was declared here
  181 |   int strandAbsoluteThreshold;
      |       ^~~~~~~~~~~~~~~~~~~~~~~
[ 79%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/NGraph.cpp.o
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/modules && /usr/bin/c++   -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=gnu++11 -MD -MT modules/CMakeFiles/ks_bubble_enumeration.dir/NGraph.cpp.o -MF CMakeFiles/ks_bubble_enumeration.dir/NGraph.cpp.o.d -o CMakeFiles/ks_bubble_enumeration.dir/NGraph.cpp.o -c /build/kissplice-2.6.2/modules/NGraph.cpp
[ 81%] Building CXX object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/Utils.cpp.o
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/c++ -DCLASSICAL_SPANNING -I/build/kissplice-2.6.2/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fopenmp -std=gnu++11 -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/Utils.cpp.o -MF CMakeFiles/ks_kissreadsSNPS.dir/Utils.cpp.o.d -o CMakeFiles/ks_kissreadsSNPS.dir/Utils.cpp.o -c /build/kissplice-2.6.2/thirdparty/kissreads/src/Utils.cpp
[ 82%] Linking CXX executable ../../../lib/kissplice/ks_kissreadsSplice
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_kissreadsSplice.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_kissreadsSplice.dir/commons.cpp.o CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.cpp.o CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.cpp.o CMakeFiles/ks_kissreadsSplice.dir/libchash.cpp.o CMakeFiles/ks_kissreadsSplice.dir/outputs.cpp.o CMakeFiles/ks_kissreadsSplice.dir/coherent_algorithm.cpp.o CMakeFiles/ks_kissreadsSplice.dir/couple.cpp.o CMakeFiles/ks_kissreadsSplice.dir/fragment_index.cpp.o CMakeFiles/ks_kissreadsSplice.dir/kissReads.cpp.o CMakeFiles/ks_kissreadsSplice.dir/list.cpp.o CMakeFiles/ks_kissreadsSplice.dir/tree.cpp.o CMakeFiles/ks_kissreadsSplice.dir/fragment_info.cpp.o CMakeFiles/ks_kissreadsSplice.dir/Utils.cpp.o -o ../../../lib/kissplice/ks_kissreadsSplice  /usr/lib/aarch64-linux-gnu/libz.so -lm -lgomp -Wl,-Bstatic -lpthread -Wl,-Bdynamic 
make[3]: Leaving directory '/build/kissplice-2.6.2/obj-aarch64-linux-gnu'
[ 82%] Built target ks_kissreadsSplice
[ 84%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/CGraph.cpp.o
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/modules && /usr/bin/c++   -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=gnu++11 -MD -MT modules/CMakeFiles/ks_bubble_enumeration.dir/CGraph.cpp.o -MF CMakeFiles/ks_bubble_enumeration.dir/CGraph.cpp.o.d -o CMakeFiles/ks_bubble_enumeration.dir/CGraph.cpp.o -c /build/kissplice-2.6.2/modules/CGraph.cpp
[ 86%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/LabelledCEdge.cpp.o
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/modules && /usr/bin/c++   -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=gnu++11 -MD -MT modules/CMakeFiles/ks_bubble_enumeration.dir/LabelledCEdge.cpp.o -MF CMakeFiles/ks_bubble_enumeration.dir/LabelledCEdge.cpp.o.d -o CMakeFiles/ks_bubble_enumeration.dir/LabelledCEdge.cpp.o -c /build/kissplice-2.6.2/modules/LabelledCEdge.cpp
[ 87%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/Utils.cpp.o
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/modules && /usr/bin/c++   -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=gnu++11 -MD -MT modules/CMakeFiles/ks_bubble_enumeration.dir/Utils.cpp.o -MF CMakeFiles/ks_bubble_enumeration.dir/Utils.cpp.o.d -o CMakeFiles/ks_bubble_enumeration.dir/Utils.cpp.o -c /build/kissplice-2.6.2/modules/Utils.cpp
[ 89%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/CGraph.cpp.o
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/modules && /usr/bin/c++   -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=gnu++11 -MD -MT modules/CMakeFiles/ks_clean_duplicates.dir/CGraph.cpp.o -MF CMakeFiles/ks_clean_duplicates.dir/CGraph.cpp.o.d -o CMakeFiles/ks_clean_duplicates.dir/CGraph.cpp.o -c /build/kissplice-2.6.2/modules/CGraph.cpp
[ 91%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/LabelledCEdge.cpp.o
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/modules && /usr/bin/c++   -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=gnu++11 -MD -MT modules/CMakeFiles/ks_clean_duplicates.dir/LabelledCEdge.cpp.o -MF CMakeFiles/ks_clean_duplicates.dir/LabelledCEdge.cpp.o.d -o CMakeFiles/ks_clean_duplicates.dir/LabelledCEdge.cpp.o -c /build/kissplice-2.6.2/modules/LabelledCEdge.cpp
[ 93%] Linking CXX executable ../../../lib/kissplice/ks_kissreadsSNPS
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/thirdparty/kissreads/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_kissreadsSNPS.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_kissreadsSNPS.dir/commons.cpp.o CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.cpp.o CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.cpp.o CMakeFiles/ks_kissreadsSNPS.dir/libchash.cpp.o CMakeFiles/ks_kissreadsSNPS.dir/outputs.cpp.o CMakeFiles/ks_kissreadsSNPS.dir/coherent_algorithm.cpp.o CMakeFiles/ks_kissreadsSNPS.dir/couple.cpp.o CMakeFiles/ks_kissreadsSNPS.dir/fragment_index.cpp.o CMakeFiles/ks_kissreadsSNPS.dir/kissReads.cpp.o CMakeFiles/ks_kissreadsSNPS.dir/list.cpp.o CMakeFiles/ks_kissreadsSNPS.dir/tree.cpp.o CMakeFiles/ks_kissreadsSNPS.dir/fragment_info.cpp.o CMakeFiles/ks_kissreadsSNPS.dir/Utils.cpp.o -o ../../../lib/kissplice/ks_kissreadsSNPS  /usr/lib/aarch64-linux-gnu/libz.so -lm -lgomp -Wl,-Bstatic -lpthread -Wl,-Bdynamic 
make[3]: Leaving directory '/build/kissplice-2.6.2/obj-aarch64-linux-gnu'
[ 93%] Built target ks_kissreadsSNPS
[ 94%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/Utils.cpp.o
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/modules && /usr/bin/c++   -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=gnu++11 -MD -MT modules/CMakeFiles/ks_clean_duplicates.dir/Utils.cpp.o -MF CMakeFiles/ks_clean_duplicates.dir/Utils.cpp.o.d -o CMakeFiles/ks_clean_duplicates.dir/Utils.cpp.o -c /build/kissplice-2.6.2/modules/Utils.cpp
/build/kissplice-2.6.2/modules/NGraph.cpp: In function 'void read_graph_edges_new(NGraph&, FILE*, FILE*, FILE*, int*, int*)':
/build/kissplice-2.6.2/modules/NGraph.cpp:1032:68: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1032 |   for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file);
      |                                                               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/NGraph.cpp:1033:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1033 |   fscanf(contents_file, "%d \n",&written_lines_before );
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/NGraph.cpp:1034:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1034 |   fscanf(contents_file, "%d \n",&written_lines_for_record );
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/NGraph.cpp:1043:56: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1043 |   for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, data_file);
      |                                                   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/NGraph.cpp:1047:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1047 |     fgets(buffer, 100 * MAX, data_file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/NGraph.cpp: In function 'void read_graph_nodes_new(NGraph&, FILE*, FILE*, FILE*, int*, int*)':
/build/kissplice-2.6.2/modules/NGraph.cpp:1079:68: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1079 |   for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file);
      |                                                               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/NGraph.cpp:1080:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1080 |   fscanf(contents_file, "%d \n",&written_lines_before );
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/NGraph.cpp:1081:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1081 |   fscanf(contents_file, "%d \n",&written_lines_for_record );
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/NGraph.cpp:1090:58: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1090 |   for (int i = 0; i < written_lines_before ; i++) { fgets(buffer, 100 * MAX, data_file); }
      |                                                     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/kissplice-2.6.2/modules/NGraph.cpp:1094:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1094 |     fgets(buffer, 100 * MAX, data_file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 96%] Linking CXX executable ../lib/kissplice/ks_run_modules
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_run_modules.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_run_modules.dir/run.cpp.o CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o CMakeFiles/ks_run_modules.dir/NGraph.cpp.o CMakeFiles/ks_run_modules.dir/CGraph.cpp.o CMakeFiles/ks_run_modules.dir/LabelledCEdge.cpp.o CMakeFiles/ks_run_modules.dir/SplitBcc.cpp.o CMakeFiles/ks_run_modules.dir/Utils.cpp.o -o ../lib/kissplice/ks_run_modules 
make[3]: Leaving directory '/build/kissplice-2.6.2/obj-aarch64-linux-gnu'
[ 96%] Built target ks_run_modules
[ 98%] Linking CXX executable ../lib/kissplice/ks_clean_duplicates
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_clean_duplicates.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_clean_duplicates.dir/CleanDuplicates.cpp.o CMakeFiles/ks_clean_duplicates.dir/CycleCompression.cpp.o CMakeFiles/ks_clean_duplicates.dir/NGraph.cpp.o CMakeFiles/ks_clean_duplicates.dir/CGraph.cpp.o CMakeFiles/ks_clean_duplicates.dir/LabelledCEdge.cpp.o CMakeFiles/ks_clean_duplicates.dir/Utils.cpp.o -o ../lib/kissplice/ks_clean_duplicates 
make[3]: Leaving directory '/build/kissplice-2.6.2/obj-aarch64-linux-gnu'
[ 98%] Built target ks_clean_duplicates
[100%] Linking CXX executable ../lib/kissplice/ks_bubble_enumeration
cd /build/kissplice-2.6.2/obj-aarch64-linux-gnu/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_bubble_enumeration.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/kissplice-2.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ks_bubble_enumeration.dir/BubbleEnumeration.cpp.o CMakeFiles/ks_bubble_enumeration.dir/CycleCompression.cpp.o CMakeFiles/ks_bubble_enumeration.dir/NGraph.cpp.o CMakeFiles/ks_bubble_enumeration.dir/CGraph.cpp.o CMakeFiles/ks_bubble_enumeration.dir/LabelledCEdge.cpp.o CMakeFiles/ks_bubble_enumeration.dir/Utils.cpp.o -o ../lib/kissplice/ks_bubble_enumeration 
make[3]: Leaving directory '/build/kissplice-2.6.2/obj-aarch64-linux-gnu'
[100%] Built target ks_bubble_enumeration
make[2]: Leaving directory '/build/kissplice-2.6.2/obj-aarch64-linux-gnu'
/usr/bin/cmake -E cmake_progress_start /build/kissplice-2.6.2/obj-aarch64-linux-gnu/CMakeFiles 0
make[1]: Leaving directory '/build/kissplice-2.6.2/obj-aarch64-linux-gnu'
   dh_auto_test
	cd obj-aarch64-linux-gnu && make -j8 test ARGS\+=--verbose ARGS\+=-j8
make[1]: Entering directory '/build/kissplice-2.6.2/obj-aarch64-linux-gnu'
Running tests...
/usr/bin/ctest --force-new-ctest-process --verbose -j8
UpdateCTestConfiguration  from :/build/kissplice-2.6.2/obj-aarch64-linux-gnu/DartConfiguration.tcl
UpdateCTestConfiguration  from :/build/kissplice-2.6.2/obj-aarch64-linux-gnu/DartConfiguration.tcl
Test project /build/kissplice-2.6.2/obj-aarch64-linux-gnu
Constructing a list of tests
Done constructing a list of tests
Updating test list for fixtures
Added 0 tests to meet fixture requirements
Checking test dependency graph...
Checking test dependency graph end
test 1
    Start 1: IsBcalmStartable

1: Test command: /build/kissplice-2.6.2/obj-aarch64-linux-gnu/lib/kissplice/bcalm "-help"
1: Working Directory: /build/kissplice-2.6.2/obj-aarch64-linux-gnu/tests
1: Test timeout computed to be: 10000000
test 2
    Start 2: KisspliceBasicTest

2: Test command: /build/kissplice-2.6.2/obj-aarch64-linux-gnu/bin/kissplice "-h"
2: Working Directory: /build/kissplice-2.6.2/obj-aarch64-linux-gnu/tests/integration_tests
2: Test timeout computed to be: 10000000
test 3
    Start 3: KisspliceDBGTest

3: Test command: /build/kissplice-2.6.2/tests/integration_tests/kisspliceDBGTest.py "/build/kissplice-2.6.2/obj-aarch64-linux-gnu/bin"
3: Working Directory: /build/kissplice-2.6.2/obj-aarch64-linux-gnu/tests/integration_tests
3: Test timeout computed to be: 10000000
test 4
    Start 4: KisspliceTwoSequencesTest

4: Test command: /build/kissplice-2.6.2/tests/integration_tests/kisspliceTwoSequencesTest.py "/build/kissplice-2.6.2/obj-aarch64-linux-gnu/bin"
4: Working Directory: /build/kissplice-2.6.2/obj-aarch64-linux-gnu/tests/integration_tests
4: Test timeout computed to be: 10000000
test 5
    Start 5: KisspliceGraphAndSequenceTest

5: Test command: /build/kissplice-2.6.2/tests/integration_tests/kisspliceGraphAndSequenceTest.py "/build/kissplice-2.6.2/obj-aarch64-linux-gnu/bin"
5: Working Directory: /build/kissplice-2.6.2/obj-aarch64-linux-gnu/tests/integration_tests
5: Test timeout computed to be: 10000000
test 6
    Start 6: KisspliceGraphTest

6: Test command: /build/kissplice-2.6.2/tests/integration_tests/kisspliceGraphTest.py "/build/kissplice-2.6.2/obj-aarch64-linux-gnu/bin"
6: Working Directory: /build/kissplice-2.6.2/obj-aarch64-linux-gnu/tests/integration_tests
6: Test timeout computed to be: 10000000
test 7
    Start 7: ksBubbleEnumerationTest

7: Test command: /build/kissplice-2.6.2/tests/functional_tests/ksBubbleEnumerationTest.py "/build/kissplice-2.6.2/obj-aarch64-linux-gnu/lib/kissplice"
7: Working Directory: /build/kissplice-2.6.2/obj-aarch64-linux-gnu/tests/functional_tests
7: Test timeout computed to be: 10000000
test 8
    Start 8: ksRunModulesTest

8: Test command: /build/kissplice-2.6.2/tests/functional_tests/ksRunModulesTest.py "/build/kissplice-2.6.2/obj-aarch64-linux-gnu/lib/kissplice"
8: Working Directory: /build/kissplice-2.6.2/obj-aarch64-linux-gnu/tests/functional_tests
8: Test timeout computed to be: 10000000
1: 
1: [bcalm_1 options]
1:        -nb-cores (1 arg) :    number of cores  [default '0']
1:        -verbose  (1 arg) :    verbosity level  [default '1']
1:        -version  (0 arg) :    version
1:        -help     (0 arg) :    help
1: 
1:    [graph options]
1:           -no-mphf   (0 arg) :    don't construct the MPHF
1: 
1:       [kmer count options]
1:              -in                                     (1 arg) :    reads file  [default '']
1:              -kmer-size                              (1 arg) :    size of a kmer  [default '31']
1:              -abundance-min                          (1 arg) :    min abundance threshold for solid kmers  [default '2']
1:              -abundance-max                          (1 arg) :    max abundance threshold for solid kmers  [default '2147483647']
1:              -solidity-custom                        (1 arg) :    when solidity-kind is custom, specifies list of files where kmer must be present  [default '']
1:              -max-memory                             (1 arg) :    max memory (in MBytes)  [default '5000']
1:              -max-disk                               (1 arg) :    max disk   (in MBytes)  [default '0']
1:              -out                                    (1 arg) :    output file  [default '']
1:              -out-dir                                (1 arg) :    output directory  [default '.']
1:              -out-tmp                                (1 arg) :    output directory for temporary files  [default '.']
1:              -out-compress                           (1 arg) :    h5 compression level (0:none, 9:best)  [default '0']
1:              -storage-type                           (1 arg) :    storage type of kmer counts ('hdf5' or 'file')  [default 'hdf5']
1:              -histo2D                                (1 arg) :    compute the 2D histogram (with first file = genome, remaining files = reads)  [default '0']
1:              -histo                                  (1 arg) :    output the kmer abundance histogram  [default '0']
1: 
1:          [kmer count, advanced performance tweaks options]
1:                 -minimizer-type   (1 arg) :    minimizer type (0=lexi, 1=freq)  [default '1']
1:                 -minimizer-size   (1 arg) :    size of a minimizer  [default '10']
1:                 -repartition-type (1 arg) :    minimizer repartition (0=unordered, 1=ordered)  [default '1']
1: 
1:       [bloom options]
1:              -bloom        (1 arg) :    bloom type ('basic', 'cache', 'neighbor')  [default 'neighbor']
1:              -debloom      (1 arg) :    debloom type ('none', 'original' or 'cascading')  [default 'cascading']
1:              -debloom-impl (1 arg) :    debloom impl ('basic', 'minimizer')  [default 'minimizer']
1: 
1:       [branching options]
1:              -branching-nodes (1 arg) :    branching type ('none' or 'stored')  [default 'stored']
1:              -topology-stats  (1 arg) :    topological information level (0 for none)  [default '0']
1: 
1:       [general options]
1:              -config-only          (0 arg) :    dump config only
1:              -nb-cores             (1 arg) :    number of cores  [default '0']
1:              -all-abundance-counts (0 arg) :    output all k-mer abundance counts instead of mean
1:              -edge-km              (1 arg) :    edge km representation  [default '0']
1:              -verbose              (1 arg) :    verbosity level  [default '1']
1:              -integer-precision    (1 arg) :    integers precision (0 for optimized value)  [default '0']
1: 
1:       [debug  options]
1:              -redo-bcalm         (0 arg) :    debug function, redo the bcalm algo
1:              -skip-bcalm         (0 arg) :    same, but       skip     bcalm
1:              -redo-bglue         (0 arg) :    same, but       redo     bglue (needs debug_keep_glue_files=true in source code)
1:              -skip-bglue         (0 arg) :    same, but       skip     bglue
1:              -redo-links         (0 arg) :    same, but       redo     links
1:              -skip-links         (0 arg) :    same, but       skip     links
1:              -nb-glue-partitions (1 arg) :    number of glue partitions (automatically calculated by default)  [default '0']
1/9 Test #1: IsBcalmStartable .................   Passed    0.16 sec
test 9
    Start 9: ksErrorRemovalTest

9: Test command: /build/kissplice-2.6.2/tests/functional_tests/ksErrorRemovalTest.py "/build/kissplice-2.6.2/obj-aarch64-linux-gnu/lib/kissplice"
9: Working Directory: /build/kissplice-2.6.2/obj-aarch64-linux-gnu/tests/functional_tests
9: Test timeout computed to be: 10000000
7: /build/kissplice-2.6.2/obj-aarch64-linux-gnu/lib/kissplice/ks_bubble_enumeration /build/kissplice-2.6.2/tests/functional_tests/data/graph_info_bcc /build/kissplice-2.6.2/tests/functional_tests/data/graph_contents_edges_bcc /build/kissplice-2.6.2/tests/functional_tests/data/graph_contents_nodes_bcc /build/kissplice-2.6.2/tests/functional_tests/data/graph_all_edges_bcc /build/kissplice-2.6.2/tests/functional_tests/data/graph_all_nodes_bcc 2 25 /build/kissplice-2.6.2/tests/functional_tests/data/test_ks_bubble_enumeration_output 3 bcc_test 0 -u 1000 -L 49 -l 42 -M 10000 -b 5
7: b'\t Enumerating bubbles with at most 5 branching nodes in each path!\n============================================================================\nSummary of results\n============================================================================\nNo of bubbles: 4\n============================================================================\n'
7: Ks_Bubble_Enumeration_Test: test SUCCESSFUL
8: /build/kissplice-2.6.2/obj-aarch64-linux-gnu/lib/kissplice/ks_run_modules /build/kissplice-2.6.2/tests/functional_tests/data/graph_HBM75brainliver_100000_k25.edges /build/kissplice-2.6.2/tests/functional_tests/data/graph_HBM75brainliver_100000_k25.nodes 25 /build/kissplice-2.6.2/tests/functional_tests/data/test_ks_run_modules_output_graph
8: b'Searching biconnected components...\nNumber of biconnected components found: 109\n\nProcessing component 1...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 2...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 5 nodes.\nDone!\n\nProcessing component 3...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 4...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 5...\nInitial size: 9 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 8 nodes.\nDone!\n\nProcessing component 6...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 7...\nInitial size: 41 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 11.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 30 nodes.\nDone!\n\nProcessing component 8...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 9...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 10...\nInitial size: 68 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 4.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 64 nodes.\nDone!\n\nProcessing component 11...\nInitial size: 54 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 5.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 49 nodes.\nDone!\n\nProcessing component 12...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 13...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 14...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 15...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 16...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 17...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 18...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 5 nodes.\nDone!\n\nProcessing component 19...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 20...\nInitial size: 37 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 37 nodes.\nDone!\n\nProcessing component 21...\nInitial size: 6 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 2.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 22...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 23...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 24...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 25...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 26...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 27...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 28...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 29...\nInitial size: 6 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 2.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 30...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 31...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 32...\nInitial size: 6 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 2.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 33...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 34...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 35...\nInitial size: 6 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 6 nodes.\nDone!\n\nProcessing component 36...\nInitial size: 9 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 8 nodes.\nDone!\n\nProcessing component 37...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 38...\nInitial size: 6 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 2.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 39...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 40...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 41...\nInitial size: 6 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 2.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 42...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 43...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 44...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 45...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 46...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 47...\nInitial size: 13 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 8.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 5 nodes.\nDone!\n\nProcessing component 48...\nInitial size: 6 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 2.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 49...\nInitial size: 6 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 2.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 50...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 51...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 52...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 53...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 54...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 55...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 56...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 57...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 58...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 59...\nInitial size: 8 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 2.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 6 nodes.\nDone!\n\nProcessing component 60...\nInitial size: 9 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 8 nodes.\nDone!\n\nProcessing component 61...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 5 nodes.\nDone!\n\nProcessing component 62...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 63...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 64...\nInitial size: 8 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 7 nodes.\nDone!\n\nProcessing component 65...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 66...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 67...\nInitial size: 6 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 2.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 68...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 5 nodes.\nDone!\n\nProcessing component 69...\nInitial size: 3 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 2.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 1 nodes.\nDone!\n\nProcessing component 70...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 4.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 1 nodes.\nDone!\n\nProcessing component 71...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 72...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 73...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 74...\nInitial size: 29 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 8.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 21 nodes.\nDone!\n\nProcessing component 75...\nInitial size: 6 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 2.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 76...\nInitial size: 8 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 3.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 3.\nFinal size: 1 nodes.\nDone!\n\nProcessing component 77...\nInitial size: 6 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 6 nodes.\nDone!\n\nProcessing component 78...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 79...\nInitial size: 7 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 3.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 80...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 81...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 82...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 83...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 84...\nInitial size: 8 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 8 nodes.\nDone!\n\nProcessing component 85...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 86...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 87...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 88...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 89...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 90...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 91...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 92...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 93...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 94...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 1.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 95...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 96...\nInitial size: 33 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 5.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 28 nodes.\nDone!\n\nProcessing component 97...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 98...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 99...\nInitial size: 5 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 5 nodes.\nDone!\n\nProcessing component 100...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 101...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 102...\nInitial size: 14 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 14 nodes.\nDone!\n\nProcessing component 103...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 104...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 105...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 0.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 4 nodes.\nDone!\n\nProcessing component 106...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 107...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 108...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\nProcessing component 109...\nInitial size: 4 nodes.\nCompressing linear paths...\nNumber of compressed nodes: 0.\nCompressing simple bubbles...\nNumber of compressed bubbles: 1.\nRecompressing linear paths...\nNumber of compressed nodes: 0.\nFinal size: 3 nodes.\nDone!\n\n'
8: ks_run_modules: test SUCCESSFUL
2/9 Test #7: ksBubbleEnumerationTest ..........   Passed    0.63 sec
9: /build/kissplice-2.6.2/obj-aarch64-linux-gnu/lib/kissplice/ks_error_removal /build/kissplice-2.6.2/tests/functional_tests/data/graph_HBM75brainliver_100000_k25.edges /build/kissplice-2.6.2/tests/functional_tests/data/graph_HBM75brainliver_100000_k25.abundance 0.02/build/kissplice-2.6.2/tests/functional_tests/data/test_ks_error_removal_output
9: b'252 out of 5336 edges removed\n'
9: ks_error_removal: test SUCCESSFUL
3/9 Test #8: ksRunModulesTest .................   Passed    0.69 sec
2: usage: kissplice [-h] [-r READFILES] [-k KVAL] [-b BVAL] [-l LLMAX]
2:                  [-m LL_MIN] [-M UL_MAX] [-g GRAPH_PREFIX] [-o OUT_DIR]
2:                  [-d PATH_TO_TMP] [-t NBPROCS] [-s OUTPUT_SNPS] [-v] [-u]
2:                  [-c MIN_COV] [-C MIN_RELATIVE_COV] [-e MIN_EDIT_DIST]
2:                  [-y MAX_CYCLES] [--mismatches MISM] [--mismatchesSNP MISMSNP]
2:                  [--counts COUNTSMETHOD] [--min_overlap MINOVERLAP]
2:                  [--timeout TIMEOUT] [--version] [--output-context]
2:                  [--output-path] [--output-branch-count] [--keep-bccs]
2:                  [--not-experimental] [--max-memory MAX_MEMORY]
2:                  [--keep-counts] [--get-mapping-info] [--stranded]
2:                  [--strandedAbsoluteThreshold STRANDEDABSOLUTETHRESHOLD]
2:                  [--strandedRelativeThreshold STRANDEDRELATIVETHRESHOLD]
2:                  [--keep-redundancy] [--keep-low-complexity]
2:                  [--lc-entropy-threshold LC_ENT] [--get-redundance-info]
2:                  [--get-low-complexity-info] [--type1-only]
2: 
2: kisSplice - local assembly of SNPs, indels and AS events
2: 
2: options:
2:   -h, --help            show this help message and exit
2:   -r READFILES          input fasta/q read files or compressed (.gz) fasta/q
2:                         files (mutiple, such as "-r file1 -r file2...")
2:   -k KVAL               k-mer size (default=41)
2:   -b BVAL               maximum number of branching nodes (default 5)
2:   -l LLMAX              maximal length of the shorter path (default: 2k+1)
2:   -m LL_MIN             minimum length of the shorter path (default 2k-8)
2:   -M UL_MAX             maximum length of the longest path (default 1000000),
2:                         skipped exons longer than UL_MAX are not reported
2:   -g GRAPH_PREFIX       path and prefix to pre-built de Bruijn graph (suffixed
2:                         by .edges/.nodes) if jointly used with -r, graph used
2:                         to find bubbles and reads used for quantification
2:   -o OUT_DIR            path to store the results and the summary log file
2:                         (default = ./results)
2:   -d PATH_TO_TMP        specific directory (absolute path) where to build
2:                         temporary files (default temporary directory
2:                         otherwise)
2:   -t NBPROCS            number of cores (must be <= number of physical cores)
2:   -s OUTPUT_SNPS        0, 1 or 2. Changes which types of SNPs will be output.
2:                         If 0 (default), will not output SNPs. If 1, will
2:                         output Type0a-SNPs. If 2, will output Type0a and
2:                         Type0b SNPs (warning: this option may increase a lot
2:                         the running time. You might also want to try the
2:                         experimental algorithm here)
2:   -v                    Verbose mode
2:   -u                    keep the nodes/edges file for unfinished bccs
2:   -c MIN_COV            an integer, k-mers present strictly less than this
2:                         number of times in the dataset will be discarded
2:                         (default 2)
2:   -C MIN_RELATIVE_COV   a percentage from [0,1), edges with relative coverage
2:                         below this number are removed (default 0.05)
2:   -e MIN_EDIT_DIST      edit distance threshold, if the two sequences (paths)
2:                         of a bubble have edit distance smaller than this
2:                         threshold, the bubble is classified as an inexact
2:                         repeat (default 3)
2:   -y MAX_CYCLES         maximal number of bubbles enumeration in each bcc. If
2:                         exceeded, no bubble is output for the bcc (default
2:                         100M)
2:   --mismatches MISM     Maximal number of substitutions authorized between a
2:                         read and a fragment (for quantification only), default
2:                         2. If you increase the mismatch and use --counts think
2:                         of increasing min_overlap too.
2:   --mismatchesSNP MISMSNP
2:                         Maximal number of substitutions authorized between a
2:                         read and a fragment (for quantification only) for SNP,
2:                         default 0.
2:   --counts COUNTSMETHOD
2:                         0,1 or 2 . Changes how the counts will be reported. If
2:                         0 : total counts, if 1: counts on junctions, if 2
2:                         (default): all counts. see User guide for more
2:                         information
2:   --min_overlap MINOVERLAP
2:                         Set how many nt must overlap a junction to be counted
2:                         by --counts option. Default=5. see User guide for more
2:                         information
2:   --timeout TIMEOUT     max amount of time (in seconds) spent for enumerating
2:                         bubbles in each bcc. If exceeded, no bubble is output
2:                         for the bcc (default 100000)
2:   --version             show program's version number and exit
2:   --output-context      Will output the maximum non-ambiguous context of a
2:                         bubble
2:   --output-path         Will output the id of the nodes composing the two
2:                         paths of the bubbles.
2:   --output-branch-count
2:                         Will output the number of branching nodes in each
2:                         path.
2:   --keep-bccs           Keep the node/edges files for all bccs.
2:   --not-experimental    Do not use a new experimental algorithm that searches
2:                         for bubbles by listing all paths.
2:   --max-memory MAX_MEMORY
2:                         If you use the experimental algorithm, you must
2:                         provide the maximum size of the process's virtual
2:                         memory (address space) in megabytes (default
2:                         unlimited). WARNING: this option does not work on Mac
2:                         operating systems.
2:   --keep-counts         Keep the .counts file after the sequencing-errors-
2:                         removal step.
2:   --get-mapping-info    Creates a file with the KissReads mapping information
2:                         of the reads on the bubbles.
2:   --stranded            Execute kissreads in stranded mode.
2:   --strandedAbsoluteThreshold STRANDEDABSOLUTETHRESHOLD
2:                         Sets the minimum number of reads mapping to a path of
2:                         a bubble in a read set is needed to call a strand.
2:   --strandedRelativeThreshold STRANDEDRELATIVETHRESHOLD
2:                         If a strand is called for a path of a bubble in a read
2:                         set, but the proportion of reads calling this strand
2:                         is less than this threshold, then the strand of the
2:                         path is set to '?' (any strand - not enough evidence
2:                         to call a strand).
2:   --keep-redundancy     Keep the Type_1 redundant cycles in the result file.
2:   --keep-low-complexity
2:                         Keep the low-complexity Type_1 cycles in the result
2:                         file.
2:   --lc-entropy-threshold LC_ENT
2:                         Cycles with a Shannon entropy value for their upper
2:                         path below this value will be removed (use --keep-low-
2:                         complexity to keep them).
2:   --get-redundance-info
2:                         Creates files with informations on compressed
2:                         redundant cycles.
2:   --get-low-complexity-info
2:                         Creates a file with informations on removed low-
2:                         complexity cycles.
2:   --type1-only          Only quantify Type 1 bubbles (alternative splicing
2:                         events, MAJOR SPEED UP with -b > 10 BUT all other
2:                         bubbles will not appear in the result file).
4/9 Test #9: ksErrorRemovalTest ...............   Passed    0.69 sec
5/9 Test #2: KisspliceBasicTest ...............   Passed    0.88 sec
6: /build/kissplice-2.6.2/obj-aarch64-linux-gnu/bin/kissplice -s 2 -k 25 -M 1000 -g /build/kissplice-2.6.2/tests/integration_tests/data/graph_HBM75brain_100000_HBM75liver_100000_k25 -C 0
6: b'\nThis is KisSplice, version 2.6.2\n\nThe command line was:       /build/kissplice-2.6.2/obj-aarch64-linux-gnu/bin/kissplice -s 2 -k 25 -M 1000 -g /build/kissplice-2.6.2/tests/integration_tests/data/graph_HBM75brain_100000_HBM75liver_100000_k25 -C 0\nUsing the read files:       None\nResults will be stored in:  /build/kissplice-2.6.2/obj-aarch64-linux-gnu/tests/integration_tests/results\nSummary log file will be saved in:  /build/kissplice-2.6.2/obj-aarch64-linux-gnu/tests/integration_tests/results/kissplice_log_summary_2023-04-12_08-19-55_790845\n\n\nElapsed time:  0.0  seconds\n\n[08:19:55 12/04/2023] --> Finding the BCCs...\n[08:19:56 12/04/2023] --> Done!\nElapsed time:  0.3  seconds\n\n[08:19:56 12/04/2023] --> Enumerating all bubbles...\nTotal number of bubbles found:  57.0\n[08:19:59 12/04/2023] --> Done!\nElapsed time:  3.7  seconds\n\n[08:19:59 12/04/2023] --> Starting Bubble Output Module\n[08:19:59 12/04/2023] --> Sampling bubbles by type...\n[08:19:59 12/04/2023] --> Done!\nYou can now access all bubbles without read coherency in: results\n\n[08:19:59 12/04/2023] --> Removing low-complexity/redundant bubbles...\n[08:19:59 12/04/2023] --> Done!\nElapsed time: 0.0 seconds\nElapsed time:  0.0  seconds\n\n\n\n \t\t ******** We are done, final results are in files results/results_graph_HBM75brain_100000_HBM75liver_100000_k25_type_*.fa **********\n\t\t TYPES:\n\t\t\t 0a: Single SNPs, Inexact Repeats or sequencing substitution errors, 83 found\n\t\t\t 0b: Multiple SNPs, Inexact Repeats or sequencing substitution errors, 17 found\n\t\t\t 1: Alternative Splicing Events, 1 found\n\t\t\t 2: Inexact Tandem Repeats, 0 found\n\t\t\t 3: Short Indels (<3nt), 16 found\n\t\t\t 4: All others, composed by a shorter path of length > 2k not being a SNP, 0 found\n\n\n \t\t ******** A summary of the execution can be found in the log file: /build/kissplice-2.6.2/obj-aarch64-linux-gnu/tests/integration_tests/results/kissplice_log_summary_2023-04-12_08-19-55_790845**********\n'
6: kisspliceGraphTest.py: test SUCCESSFUL
6/9 Test #6: KisspliceGraphTest ...............   Passed    5.08 sec
5: /build/kissplice-2.6.2/obj-aarch64-linux-gnu/bin/kissplice -s 2 -k 25 -M 1000 -g /build/kissplice-2.6.2/tests/integration_tests/data/graph_HBM75brain_100000_HBM75liver_100000_k25 -r /build/kissplice-2.6.2/tests/integration_tests/data/HBM75brain_100000.fasta -C 0
5: b'\nThis is KisSplice, version 2.6.2\n\nThe command line was:       /build/kissplice-2.6.2/obj-aarch64-linux-gnu/bin/kissplice -s 2 -k 25 -M 1000 -g /build/kissplice-2.6.2/tests/integration_tests/data/graph_HBM75brain_100000_HBM75liver_100000_k25 -r /build/kissplice-2.6.2/tests/integration_tests/data/HBM75brain_100000.fasta -C 0\n-r and -g options used together: \nthe graph will be used to find events, while reads files are used for checking read-coherency and coverage\nUsing the read files:       /build/kissplice-2.6.2/tests/integration_tests/data/HBM75brain_100000.fasta\nResults will be stored in:  /build/kissplice-2.6.2/obj-aarch64-linux-gnu/tests/integration_tests/results\nSummary log file will be saved in:  /build/kissplice-2.6.2/obj-aarch64-linux-gnu/tests/integration_tests/results/kissplice_log_summary_2023-04-12_08-19-55_846938\n\n\nElapsed time:  0.0  seconds\n\n[08:19:55 12/04/2023] --> Finding the BCCs...\n[08:19:56 12/04/2023] --> Done!\nElapsed time:  0.2  seconds\n\n[08:19:56 12/04/2023] --> Enumerating all bubbles...\nTotal number of bubbles found:  57.0\n[08:20:00 12/04/2023] --> Done!\nElapsed time:  3.9  seconds\n\n[08:20:00 12/04/2023] --> Starting Bubble Output Module\nBefore checking for read coherency, all bubbles will be written to folder results/results_without_read_coherency\nThis enables you to access them even before the read coherency module finishes, which can take a long time\n[08:20:00 12/04/2023] --> Sampling bubbles by type...\n[08:20:00 12/04/2023] --> Done!\nYou can now access all bubbles without read coherency in: results/results_without_read_coherency\n\n[08:20:00 12/04/2023] --> Removing low-complexity/redundant bubbles...\n[08:20:00 12/04/2023] --> Done!\nElapsed time: 0.1 seconds\n\n[08:20:00 12/04/2023] --> Computing read coherence and coverage...\n[08:20:01 12/04/2023] --> Done!\n[08:20:01 12/04/2023] --> Sorting all bubbles...\n[08:20:01 12/04/2023] --> Done!\nElapsed time:  1.7  seconds\n\n\n\n \t\t ******** We are done, final coherent results are in files results/results_HBM75brain_100000_k25_coherents_type_*.fa ********** \n \t\t ******** All non read coherent results are in files results/results_HBM75brain_100000_k25_uncoherent.fa ****** \n\n\n\t\t TYPES:\n\t\t\t 0a: Single SNPs, Inexact Repeats or sequencing substitution errors, 19 found\n\t\t\t 0b: Multiple SNPs, Inexact Repeats or sequencing substitution errors, 1 found\n\t\t\t 1: Alternative Splicing Events, 0 found\n\t\t\t 2: Inexact Tandem Repeats, 0 found\n\t\t\t 3: Short Indels (<3nt), 14 found\n\t\t\t 4: All others, composed by a shorter path of length > 2k not being a SNP, 0 found\n\n\n \t\t ******** A summary of the execution can be found in the log file: /build/kissplice-2.6.2/obj-aarch64-linux-gnu/tests/integration_tests/results/kissplice_log_summary_2023-04-12_08-19-55_846938**********\n'
5: kisspliceGraphAndSequenceTest.py: test SUCCESSFUL
7/9 Test #5: KisspliceGraphAndSequenceTest ....   Passed    6.98 sec
8/9 Test #3: KisspliceDBGTest .................   Passed   21.42 sec
4: /build/kissplice-2.6.2/obj-aarch64-linux-gnu/bin/kissplice -s 2 -k 25 -M 1000 -r /build/kissplice-2.6.2/tests/integration_tests/data/HBM75brain_100000.fasta -r /build/kissplice-2.6.2/tests/integration_tests/data/HBM75liver_100000.fasta -C 0
4: b'\nThis is KisSplice, version 2.6.2\n\nThe command line was:       /build/kissplice-2.6.2/obj-aarch64-linux-gnu/bin/kissplice -s 2 -k 25 -M 1000 -r /build/kissplice-2.6.2/tests/integration_tests/data/HBM75brain_100000.fasta -r /build/kissplice-2.6.2/tests/integration_tests/data/HBM75liver_100000.fasta -C 0\nUsing the read files:       /build/kissplice-2.6.2/tests/integration_tests/data/HBM75brain_100000.fasta /build/kissplice-2.6.2/tests/integration_tests/data/HBM75liver_100000.fasta\nResults will be stored in:  /build/kissplice-2.6.2/obj-aarch64-linux-gnu/tests/integration_tests/results\nSummary log file will be saved in:  /build/kissplice-2.6.2/obj-aarch64-linux-gnu/tests/integration_tests/results/kissplice_log_summary_2023-04-12_08-19-55_181465\n\n\n[08:19:55 12/04/2023] --> Building de Bruijn graph...\nGraph will be written in results/graph_HBM75brain_100000_HBM75liver_100000_k25.[edges/nodes]\n[08:20:12 12/04/2023] --> Done!\nElapsed time:  16.8  seconds\nElapsed time:  0.0  seconds\n\n[08:20:12 12/04/2023] --> Finding the BCCs...\n[08:20:12 12/04/2023] --> Done!\nElapsed time:  0.1  seconds\n\n[08:20:12 12/04/2023] --> Enumerating all bubbles...\nTotal number of bubbles found:  57.0\n[08:20:15 12/04/2023] --> Done!\nElapsed time:  2.6  seconds\n\n[08:20:15 12/04/2023] --> Starting Bubble Output Module\nBefore checking for read coherency, all bubbles will be written to folder results/results_without_read_coherency\nThis enables you to access them even before the read coherency module finishes, which can take a long time\n[08:20:15 12/04/2023] --> Sampling bubbles by type...\n[08:20:15 12/04/2023] --> Done!\nYou can now access all bubbles without read coherency in: results/results_without_read_coherency\n\n[08:20:15 12/04/2023] --> Removing low-complexity/redundant bubbles...\n[08:20:15 12/04/2023] --> Done!\nElapsed time: 0.0 seconds\n\n[08:20:16 12/04/2023] --> Computing read coherence and coverage...\n[08:20:17 12/04/2023] --> Done!\n[08:20:17 12/04/2023] --> Sorting all bubbles...\n[08:20:17 12/04/2023] --> Done!\nElapsed time:  2.2  seconds\n\n\n\n \t\t ******** We are done, final coherent results are in files results/results_HBM75brain_100000_HBM75liver_100000_k25_coherents_type_*.fa ********** \n \t\t ******** All non read coherent results are in files results/results_HBM75brain_100000_HBM75liver_100000_k25_uncoherent.fa ****** \n\n\n\t\t TYPES:\n\t\t\t 0a: Single SNPs, Inexact Repeats or sequencing substitution errors, 69 found\n\t\t\t 0b: Multiple SNPs, Inexact Repeats or sequencing substitution errors, 8 found\n\t\t\t 1: Alternative Splicing Events, 1 found\n\t\t\t 2: Inexact Tandem Repeats, 0 found\n\t\t\t 3: Short Indels (<3nt), 16 found\n\t\t\t 4: All others, composed by a shorter path of length > 2k not being a SNP, 0 found\n\n\n \t\t ******** A summary of the execution can be found in the log file: /build/kissplice-2.6.2/obj-aarch64-linux-gnu/tests/integration_tests/results/kissplice_log_summary_2023-04-12_08-19-55_181465**********\n'
4: kisspliceTwoSequencesTest.py: test SUCCESSFUL
9/9 Test #4: KisspliceTwoSequencesTest ........   Passed   22.75 sec

100% tests passed, 0 tests failed out of 9

Total Test time (real) =  22.77 sec
make[1]: Leaving directory '/build/kissplice-2.6.2/obj-aarch64-linux-gnu'
   create-stamp debian/debhelper-build-stamp
   dh_prep
   dh_auto_install --destdir=debian/kissplice/
	cd obj-aarch64-linux-gnu && make -j8 install DESTDIR=/build/kissplice-2.6.2/debian/kissplice AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/kissplice-2.6.2/obj-aarch64-linux-gnu'
/usr/bin/cmake -S/build/kissplice-2.6.2 -B/build/kissplice-2.6.2/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
make  -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/build/kissplice-2.6.2/obj-aarch64-linux-gnu'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/build/kissplice-2.6.2/obj-aarch64-linux-gnu'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /build/kissplice-2.6.2/debian/kissplice/usr/bin/kissplice
-- Installing: /build/kissplice-2.6.2/debian/kissplice/usr/lib/kissplice/bcalm
-- Installing: /build/kissplice-2.6.2/debian/kissplice/usr/lib/kissplice/ks_kissreadsSNPS
-- Installing: /build/kissplice-2.6.2/debian/kissplice/usr/lib/kissplice/ks_kissreadsSplice
-- Installing: /build/kissplice-2.6.2/debian/kissplice/usr/lib/kissplice/ks_clean_duplicates
-- Installing: /build/kissplice-2.6.2/debian/kissplice/usr/lib/kissplice/ks_bubble_enumeration
-- Installing: /build/kissplice-2.6.2/debian/kissplice/usr/lib/kissplice/ks_run_modules
-- Installing: /build/kissplice-2.6.2/debian/kissplice/usr/lib/kissplice/ks_error_removal
-- Installing: /build/kissplice-2.6.2/debian/kissplice/usr/lib/kissplice/ks_print_bcc
-- Installing: /build/kissplice-2.6.2/debian/kissplice/usr/share/man/man1/kissplice.1
-- Installing: /build/kissplice-2.6.2/debian/kissplice/usr/share/doc/kissplice/user_guide.pdf
make[1]: Leaving directory '/build/kissplice-2.6.2/obj-aarch64-linux-gnu'
   debian/rules override_dh_install
make[1]: Entering directory '/build/kissplice-2.6.2'
rm -rf debian/kissplice/usr/README.md debian/kissplice/build debian/kissplice/builds
rm -f debian/kissplice/usr/lib/kissplice/bcalm
mkdir -p debian/kissplice/usr/share/kissplice
mv debian/kissplice/usr/bin/kissplice debian/kissplice/usr/share/kissplice/kissplice.py
make[1]: Leaving directory '/build/kissplice-2.6.2'
   dh_installdocs
   dh_installchangelogs
   dh_installexamples
   dh_installman
   dh_python3
I: dh_python3 tools:114: replacing shebang in debian/kissplice/usr/share/kissplice/kissplice.py
   dh_perl
   dh_link
   dh_strip_nondeterminism
   debian/rules override_dh_compress
make[1]: Entering directory '/build/kissplice-2.6.2'
dh_compress --exclude=.pdf
make[1]: Leaving directory '/build/kissplice-2.6.2'
   dh_fixperms
   dh_missing
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
   dh_installdeb
   dh_gencontrol
   dh_md5sums
   dh_builddeb
dpkg-deb: building package 'kissplice-dbgsym' in '../kissplice-dbgsym_2.6.2-2_arm64.deb'.
dpkg-deb: building package 'kissplice' in '../kissplice_2.6.2-2_arm64.deb'.
 dpkg-genbuildinfo --build=binary -O../kissplice_2.6.2-2_arm64.buildinfo
 dpkg-genchanges --build=binary -O../kissplice_2.6.2-2_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/8864/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/8864/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/8864 and its subdirectories
I: Current time: Wed Apr 12 08:20:40 +14 2023
I: pbuilder-time-stamp: 1681237240