I: pbuilder: network access will be disabled during build
I: Current time: Mon Jan 8 11:36:59 +14 2024
I: pbuilder-time-stamp: 1704663419
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [logol_1.7.9+dfsg-6.dsc]
I: copying [./logol_1.7.9+dfsg.orig.tar.xz]
I: copying [./logol_1.7.9+dfsg-6.debian.tar.xz]
I: Extracting source
gpgv: Signature made Wed Dec 14 08:39:50 2022
gpgv: using RSA key 5FB46F83D3B952046335D26D78DC68DB326D8438
gpgv: issuer "osallou@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./logol_1.7.9+dfsg-6.dsc: no acceptable signature found
dpkg-source: info: extracting logol in logol-1.7.9+dfsg
dpkg-source: info: unpacking logol_1.7.9+dfsg.orig.tar.xz
dpkg-source: info: unpacking logol_1.7.9+dfsg-6.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying remove_drmaa_support
dpkg-source: info: applying fixLibPath
dpkg-source: info: applying setDebianDirs
dpkg-source: info: applying fix_doc_generation
dpkg-source: info: applying remove_rubygems_usage
dpkg-source: info: applying fix_antlr35
dpkg-source: info: applying fix_swipl_declarations
dpkg-source: info: applying fix_swipl_foreign_load
dpkg-source: info: applying remove_test
dpkg-source: info: applying fix_biojava_paths_in_scripts.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/645603/tmp/hooks/D01_modify_environment starting
debug: Running on codethink02-arm64.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 Jan 7 21:37 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/645603/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/645603/tmp/hooks/D02_print_environment starting
I: set
BASH=/bin/sh
BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
BASH_ALIASES=()
BASH_ARGC=()
BASH_ARGV=()
BASH_CMDS=()
BASH_LINENO=([0]="12" [1]="0")
BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu")
BASH_VERSION='5.2.15(1)-release'
BUILDDIR=/build/reproducible-path
BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
BUILDUSERNAME=pbuilder2
BUILD_ARCH=arm64
DEBIAN_FRONTEND=noninteractive
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
DIRSTACK=()
DISTRIBUTION=bookworm
EUID=0
FUNCNAME=([0]="Echo" [1]="main")
GROUPS=()
HOME=/root
HOSTNAME=i-capture-the-hostname
HOSTTYPE=aarch64
HOST_ARCH=arm64
IFS='
'
INVOCATION_ID=ec16420b00e2420e9838d5b8c6efd945
LANG=C
LANGUAGE=nl_BE:nl
LC_ALL=C
MACHTYPE=aarch64-unknown-linux-gnu
MAIL=/var/mail/root
OPTERR=1
OPTIND=1
OSTYPE=linux-gnu
PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
PBCURRENTCOMMANDLINEOPERATION=build
PBUILDER_OPERATION=build
PBUILDER_PKGDATADIR=/usr/share/pbuilder
PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
PBUILDER_SYSCONFDIR=/etc
PIPESTATUS=([0]="0")
POSIXLY_CORRECT=y
PPID=645603
PS4='+ '
PWD=/
SHELL=/bin/bash
SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
SHLVL=3
SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.0gChGQiu/pbuilderrc_WeoK --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.0gChGQiu/b2 --logfile b2/build.log logol_1.7.9+dfsg-6.dsc'
SUDO_GID=109
SUDO_UID=104
SUDO_USER=jenkins
TERM=unknown
TZ=/usr/share/zoneinfo/Etc/GMT-14
UID=0
USER=root
_='I: set'
http_proxy=http://192.168.101.104:3128
I: uname -a
Linux i-capture-the-hostname 6.1.0-17-cloud-arm64 #1 SMP Debian 6.1.69-1 (2023-12-30) aarch64 GNU/Linux
I: ls -l /bin
total 7104
-rwxr-xr-x 1 root root 1346480 Apr 23 2023 bash
-rwxr-xr-x 3 root root 67728 Sep 19 2022 bunzip2
-rwxr-xr-x 3 root root 67728 Sep 19 2022 bzcat
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep
-rwxr-xr-x 3 root root 67728 Sep 19 2022 bzip2
-rwxr-xr-x 1 root root 67664 Sep 19 2022 bzip2recover
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore
-rwxr-xr-x 1 root root 68536 Sep 20 2022 cat
-rwxr-xr-x 1 root root 68616 Sep 20 2022 chgrp
-rwxr-xr-x 1 root root 68552 Sep 20 2022 chmod
-rwxr-xr-x 1 root root 68632 Sep 20 2022 chown
-rwxr-xr-x 1 root root 200264 Sep 20 2022 cp
-rwxr-xr-x 1 root root 133640 Jan 5 2023 dash
-rwxr-xr-x 1 root root 134144 Sep 20 2022 date
-rwxr-xr-x 1 root root 134248 Sep 20 2022 dd
-rwxr-xr-x 1 root root 134888 Sep 20 2022 df
-rwxr-xr-x 1 root root 200440 Sep 20 2022 dir
-rwxr-xr-x 1 root root 141720 Mar 23 2023 dmesg
lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname
-rwxr-xr-x 1 root root 68408 Sep 20 2022 echo
-rwxr-xr-x 1 root root 41 Jan 24 2023 egrep
-rwxr-xr-x 1 root root 68384 Sep 20 2022 false
-rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep
-rwxr-xr-x 1 root root 134584 Mar 23 2023 findmnt
-rwsr-xr-x 1 root root 67744 Mar 23 2023 fusermount
-rwxr-xr-x 1 root root 198880 Jan 24 2023 grep
-rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip
-rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe
-rwxr-xr-x 1 root root 93752 Apr 10 2022 gzip
-rwxr-xr-x 1 root root 67592 Dec 19 2022 hostname
-rwxr-xr-x 1 root root 68664 Sep 20 2022 ln
-rwxr-xr-x 1 root root 69208 Mar 23 2023 login
-rwxr-xr-x 1 root root 200440 Sep 20 2022 ls
-rwxr-xr-x 1 root root 264360 Mar 23 2023 lsblk
-rwxr-xr-x 1 root root 134384 Sep 20 2022 mkdir
-rwxr-xr-x 1 root root 68768 Sep 20 2022 mknod
-rwxr-xr-x 1 root root 68472 Sep 20 2022 mktemp
-rwxr-xr-x 1 root root 67752 Mar 23 2023 more
-rwsr-xr-x 1 root root 67744 Mar 23 2023 mount
-rwxr-xr-x 1 root root 67744 Mar 23 2023 mountpoint
-rwxr-xr-x 1 root root 134728 Sep 20 2022 mv
lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 68496 Sep 20 2022 pwd
lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash
-rwxr-xr-x 1 root root 68456 Sep 20 2022 readlink
-rwxr-xr-x 1 root root 68592 Sep 20 2022 rm
-rwxr-xr-x 1 root root 68480 Sep 20 2022 rmdir
-rwxr-xr-x 1 root root 68392 Jul 28 23:46 run-parts
-rwxr-xr-x 1 root root 134536 Jan 5 2023 sed
lrwxrwxrwx 1 root root 9 Jan 7 21:37 sh -> /bin/bash
-rwxr-xr-x 1 root root 68432 Sep 20 2022 sleep
-rwxr-xr-x 1 root root 134088 Sep 20 2022 stty
-rwsr-xr-x 1 root root 133312 Mar 23 2023 su
-rwxr-xr-x 1 root root 68448 Sep 20 2022 sync
-rwxr-xr-x 1 root root 539896 Apr 6 2023 tar
-rwxr-xr-x 1 root root 67904 Jul 28 23:46 tempfile
-rwxr-xr-x 1 root root 134160 Sep 20 2022 touch
-rwxr-xr-x 1 root root 68384 Sep 20 2022 true
-rwxr-xr-x 1 root root 67664 Mar 23 2023 ulockmgr_server
-rwsr-xr-x 1 root root 67744 Mar 23 2023 umount
-rwxr-xr-x 1 root root 68416 Sep 20 2022 uname
-rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress
-rwxr-xr-x 1 root root 200440 Sep 20 2022 vdir
-rwxr-xr-x 1 root root 133312 Mar 23 2023 wdctl
lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat
-rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp
-rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff
-rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep
-rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep
-rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce
-rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep
-rwxr-xr-x 1 root root 2206 Apr 10 2022 zless
-rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore
-rwxr-xr-x 1 root root 4577 Apr 10 2022 znew
I: user script /srv/workspace/pbuilder/645603/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 12), default-jdk, ant, ruby, gawk, swi-prolog (>= 8.4.2), swi-prolog-abi-binary-68, libbiojava-java (>= 1:1.9.5+dfsg), antlr3, libcommons-cli-java, libcommons-collections3-java, libcommons-configuration-java, libcommons-lang-java, libcommons-logging-java, libxalan2-java, libxerces2-java, junit4, libmail-java, liblog4j1.2-java, texlive, texlive-latex-extra, tex4ht, ant-optional, cassiopee, ruby-cassiopee, chrpath
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 18171 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on default-jdk; however:
Package default-jdk is not installed.
pbuilder-satisfydepends-dummy depends on ant; however:
Package ant is not installed.
pbuilder-satisfydepends-dummy depends on ruby; however:
Package ruby is not installed.
pbuilder-satisfydepends-dummy depends on gawk; however:
Package gawk is not installed.
pbuilder-satisfydepends-dummy depends on swi-prolog (>= 8.4.2); however:
Package swi-prolog is not installed.
pbuilder-satisfydepends-dummy depends on swi-prolog-abi-binary-68; however:
Package swi-prolog-abi-binary-68 is not installed.
pbuilder-satisfydepends-dummy depends on libbiojava-java (>= 1:1.9.5+dfsg); however:
Package libbiojava-java is not installed.
pbuilder-satisfydepends-dummy depends on antlr3; however:
Package antlr3 is not installed.
pbuilder-satisfydepends-dummy depends on libcommons-cli-java; however:
Package libcommons-cli-java is not installed.
pbuilder-satisfydepends-dummy depends on libcommons-collections3-java; however:
Package libcommons-collections3-java is not installed.
pbuilder-satisfydepends-dummy depends on libcommons-configuration-java; however:
Package libcommons-configuration-java is not installed.
pbuilder-satisfydepends-dummy depends on libcommons-lang-java; however:
Package libcommons-lang-java is not installed.
pbuilder-satisfydepends-dummy depends on libcommons-logging-java; however:
Package libcommons-logging-java is not installed.
pbuilder-satisfydepends-dummy depends on libxalan2-java; however:
Package libxalan2-java is not installed.
pbuilder-satisfydepends-dummy depends on libxerces2-java; however:
Package libxerces2-java is not installed.
pbuilder-satisfydepends-dummy depends on junit4; however:
Package junit4 is not installed.
pbuilder-satisfydepends-dummy depends on libmail-java; however:
Package libmail-java is not installed.
pbuilder-satisfydepends-dummy depends on liblog4j1.2-java; however:
Package liblog4j1.2-java is not installed.
pbuilder-satisfydepends-dummy depends on texlive; however:
Package texlive is not installed.
pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however:
Package texlive-latex-extra is not installed.
pbuilder-satisfydepends-dummy depends on tex4ht; however:
Package tex4ht is not installed.
pbuilder-satisfydepends-dummy depends on ant-optional; however:
Package ant-optional is not installed.
pbuilder-satisfydepends-dummy depends on cassiopee; however:
Package cassiopee is not installed.
pbuilder-satisfydepends-dummy depends on ruby-cassiopee; however:
Package ruby-cassiopee is not installed.
pbuilder-satisfydepends-dummy depends on chrpath; however:
Package chrpath is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
adwaita-icon-theme{a} ant{a} ant-optional{a} antlr3{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} cassiopee{a} chrpath{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} gawk{a} gettext{a} gettext-base{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} java-common{a} junit4{a} libactivation-java{a} libantlr3-runtime-java{a} libapache-pom-java{a} libarchive-zip-perl{a} libarchive13{a} libasound2{a} libasound2-data{a} libatinject-jsr330-api-java{a} libatk1.0-0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbiojava-java{a} libbiojava1.9-java{a} libboost-serialization1.74.0{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcassie1v5{a} libcommons-cli-java{a} libcommons-collections3-java{a} libcommons-configuration-java{a} libcommons-dbcp-java{a} libcommons-lang-java{a} libcommons-logging-java{a} libcommons-parent-java{a} libcommons-pool-java{a} libcups2{a} libdatrie1{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libelf1{a} liberror-prone-java{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontbox-java{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgflags2.2{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgoogle-glog0v6{a} libgraphite2-3{a} libgtk2.0-0{a} libgtk2.0-common{a} libguava-java{a} libhamcrest-java{a} libharfbuzz0b{a} libice6{a} libicu72{a} libjbig0{a} libjgraph-java{a} libjgrapht0.8-java{a} libjpeg62-turbo{a} libjsr305-java{a} libkpathsea6{a} liblcms2-2{a} liblerc4{a} libllvm15{a} liblog4j1.2-java{a} libmagic-mgc{a} libmagic1{a} libmail-java{a} libncurses6{a} libnspr4{a} libnss3{a} libossp-uuid16{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpcsclite1{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libptexenc1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libruby{a} libruby3.1{a} libsensors-config{a} libsensors5{a} libsigsegv2{a} libsm6{a} libstringtemplate4-java{a} libsub-override-perl{a} libsynctex2{a} libtcmalloc-minimal4{a} libteckit0{a} libtexlua53-5{a} libthai-data{a} libthai0{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxalan2-java{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxerces2-java{a} libxext6{a} libxfixes3{a} libxft2{a} libxi6{a} libxinerama1{a} libxml-commons-external-java{a} libxml-commons-resolver1.1-java{a} libxml2{a} libxmu6{a} libxpm4{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxt6{a} libxtst6{a} libxxf86vm1{a} libyaml-0-2{a} libz3-4{a} libzzip-0-13{a} m4{a} man-db{a} media-types{a} openjdk-17-jdk{a} openjdk-17-jdk-headless{a} openjdk-17-jre{a} openjdk-17-jre-headless{a} openssl{a} po-debconf{a} preview-latex-style{a} python3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} rake{a} readline-common{a} ruby{a} ruby-cassiopee{a} ruby-net-telnet{a} ruby-rubygems{a} ruby-sdbm{a} ruby-text{a} ruby-webrick{a} ruby-xmlrpc{a} ruby3.1{a} rubygems-integration{a} sensible-utils{a} shared-mime-info{a} swi-prolog{a} swi-prolog-core{a} swi-prolog-core-packages{a} swi-prolog-doc{a} swi-prolog-nox{a} swi-prolog-x{a} t1utils{a} tex-common{a} texlive{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} texlive-plain-generic{a} ucf{a} x11-common{a} xdg-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
alsa-topology-conf alsa-ucm-conf curl dbus dvisvgm fonts-dejavu-extra fonts-lato libarchive-cpio-perl libatk-wrapper-java-jni libfile-mimeinfo-perl libgail-common libgdk-pixbuf2.0-bin libglib2.0-data libgpm2 libgtk2.0-bin libjs-jquery libltdl-dev libmail-sendmail-perl libnet-dbus-perl librsvg2-common libspreadsheet-parseexcel-perl libstringtemplate-java libx11-protocol-perl libxt-dev lmodern lynx tex-gyre tipa tk wget x11-utils x11-xserver-utils xdg-user-dirs zip
0 packages upgraded, 240 newly installed, 0 to remove and 0 not upgraded.
Need to get 355 MB of archives. After unpacking 1128 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main arm64 readline-common all 8.2-1.3 [69.0 kB]
Get: 2 http://deb.debian.org/debian bookworm/main arm64 libreadline8 arm64 8.2-1.3 [155 kB]
Get: 3 http://deb.debian.org/debian bookworm/main arm64 libsigsegv2 arm64 2.14-1 [37.0 kB]
Get: 4 http://deb.debian.org/debian bookworm/main arm64 gawk arm64 1:5.2.1-2 [640 kB]
Get: 5 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-minimal arm64 3.11.2-6 [806 kB]
Get: 6 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB]
Get: 7 http://deb.debian.org/debian bookworm/main arm64 python3.11-minimal arm64 3.11.2-6 [1858 kB]
Get: 8 http://deb.debian.org/debian bookworm/main arm64 python3-minimal arm64 3.11.2-1+b1 [26.3 kB]
Get: 9 http://deb.debian.org/debian bookworm/main arm64 media-types all 10.0.0 [26.1 kB]
Get: 10 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-stdlib arm64 3.11.2-6 [1747 kB]
Get: 11 http://deb.debian.org/debian bookworm/main arm64 python3.11 arm64 3.11.2-6 [572 kB]
Get: 12 http://deb.debian.org/debian bookworm/main arm64 libpython3-stdlib arm64 3.11.2-1+b1 [9296 B]
Get: 13 http://deb.debian.org/debian bookworm/main arm64 python3 arm64 3.11.2-1+b1 [26.3 kB]
Get: 14 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 15 http://deb.debian.org/debian bookworm/main arm64 openssl arm64 3.0.11-1~deb12u2 [1385 kB]
Get: 16 http://deb.debian.org/debian bookworm/main arm64 ca-certificates all 20230311 [153 kB]
Get: 17 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB]
Get: 18 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB]
Get: 19 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB]
Get: 20 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB]
Get: 21 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB]
Get: 22 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB]
Get: 23 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB]
Get: 24 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB]
Get: 25 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB]
Get: 26 http://deb.debian.org/debian bookworm/main arm64 ucf all 3.0043+nmu1 [55.2 kB]
Get: 27 http://deb.debian.org/debian bookworm/main arm64 hicolor-icon-theme all 0.17-2 [11.4 kB]
Get: 28 http://deb.debian.org/debian bookworm/main arm64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-1 [306 kB]
Get: 29 http://deb.debian.org/debian bookworm/main arm64 libglib2.0-0 arm64 2.74.6-2 [1310 kB]
Get: 30 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB]
Get: 31 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.3~deb12u1 [619 kB]
Get: 32 http://deb.debian.org/debian bookworm/main arm64 shared-mime-info arm64 2.2-1 [727 kB]
Get: 33 http://deb.debian.org/debian bookworm/main arm64 libjpeg62-turbo arm64 1:2.1.5-2 [171 kB]
Get: 34 http://deb.debian.org/debian bookworm/main arm64 libpng16-16 arm64 1.6.39-2 [269 kB]
Get: 35 http://deb.debian.org/debian bookworm/main arm64 libdeflate0 arm64 1.14-1 [54.3 kB]
Get: 36 http://deb.debian.org/debian bookworm/main arm64 libjbig0 arm64 2.1-6.1 [30.0 kB]
Get: 37 http://deb.debian.org/debian bookworm/main arm64 liblerc4 arm64 4.0.0+ds-2 [138 kB]
Get: 38 http://deb.debian.org/debian bookworm/main arm64 libwebp7 arm64 1.2.4-0.2+deb12u1 [260 kB]
Get: 39 http://deb.debian.org/debian bookworm/main arm64 libtiff6 arm64 4.5.0-6+deb12u1 [301 kB]
Get: 40 http://deb.debian.org/debian bookworm/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.10+dfsg-1+b1 [130 kB]
Get: 41 http://deb.debian.org/debian bookworm/main arm64 gtk-update-icon-cache arm64 3.24.38-2~deb12u1 [43.4 kB]
Get: 42 http://deb.debian.org/debian bookworm/main arm64 adwaita-icon-theme all 43-1 [5124 kB]
Get: 43 http://deb.debian.org/debian bookworm/main arm64 ca-certificates-java all 20230710~deb12u1 [11.9 kB]
Get: 44 http://deb.debian.org/debian bookworm/main arm64 java-common all 0.74 [6388 B]
Get: 45 http://deb.debian.org/debian bookworm/main arm64 libavahi-common-data arm64 0.8-10 [107 kB]
Get: 46 http://deb.debian.org/debian bookworm/main arm64 libavahi-common3 arm64 0.8-10 [40.6 kB]
Get: 47 http://deb.debian.org/debian bookworm/main arm64 libdbus-1-3 arm64 1.14.10-1~deb12u1 [193 kB]
Get: 48 http://deb.debian.org/debian bookworm/main arm64 libavahi-client3 arm64 0.8-10 [43.8 kB]
Get: 49 http://deb.debian.org/debian bookworm/main arm64 libcups2 arm64 2.4.2-3+deb12u5 [229 kB]
Get: 50 http://deb.debian.org/debian bookworm/main arm64 liblcms2-2 arm64 2.14-2 [143 kB]
Get: 51 http://deb.debian.org/debian bookworm/main arm64 libbrotli1 arm64 1.0.9-2+b6 [269 kB]
Get: 52 http://deb.debian.org/debian bookworm/main arm64 libfreetype6 arm64 2.12.1+dfsg-5 [369 kB]
Get: 53 http://deb.debian.org/debian bookworm/main arm64 fonts-dejavu-core all 2.37-6 [1068 kB]
Get: 54 http://deb.debian.org/debian bookworm/main arm64 fontconfig-config arm64 2.14.1-4 [315 kB]
Get: 55 http://deb.debian.org/debian bookworm/main arm64 libfontconfig1 arm64 2.14.1-4 [381 kB]
Get: 56 http://deb.debian.org/debian bookworm/main arm64 libnspr4 arm64 2:4.35-1 [105 kB]
Get: 57 http://deb.debian.org/debian bookworm/main arm64 libnss3 arm64 2:3.87.1-1 [1218 kB]
Get: 58 http://deb.debian.org/debian bookworm/main arm64 libasound2-data all 1.2.8-1 [20.5 kB]
Get: 59 http://deb.debian.org/debian bookworm/main arm64 libasound2 arm64 1.2.8-1+b1 [327 kB]
Get: 60 http://deb.debian.org/debian bookworm/main arm64 libgraphite2-3 arm64 1.3.14-1 [75.6 kB]
Get: 61 http://deb.debian.org/debian bookworm/main arm64 libharfbuzz0b arm64 6.0.0+dfsg-3 [1914 kB]
Get: 62 http://deb.debian.org/debian bookworm/main arm64 libpcsclite1 arm64 1.9.9-2 [49.3 kB]
Get: 63 http://deb.debian.org/debian bookworm/main arm64 openjdk-17-jre-headless arm64 17.0.9+9-1~deb12u1 [42.7 MB]
Get: 64 http://deb.debian.org/debian bookworm/main arm64 default-jre-headless arm64 2:1.17-74 [2932 B]
Get: 65 http://deb.debian.org/debian bookworm/main arm64 ant all 1.10.13-1 [2161 kB]
Get: 66 http://deb.debian.org/debian bookworm/main arm64 ant-optional all 1.10.13-1 [449 kB]
Get: 67 http://deb.debian.org/debian bookworm/main arm64 libantlr3-runtime-java all 3.5.3-1 [165 kB]
Get: 68 http://deb.debian.org/debian bookworm/main arm64 libstringtemplate4-java all 4.0.8-2.1 [241 kB]
Get: 69 http://deb.debian.org/debian bookworm/main arm64 antlr3 all 3.5.3-1 [1151 kB]
Get: 70 http://deb.debian.org/debian bookworm/main arm64 at-spi2-common all 2.46.0-5 [162 kB]
Get: 71 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB]
Get: 72 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB]
Get: 73 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 74 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get: 75 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB]
Get: 76 http://deb.debian.org/debian bookworm/main arm64 libboost-serialization1.74.0 arm64 1.74.0+ds1-21 [308 kB]
Get: 77 http://deb.debian.org/debian bookworm/main arm64 libgflags2.2 arm64 2.2.2-2 [71.2 kB]
Get: 78 http://deb.debian.org/debian bookworm/main arm64 libgoogle-glog0v6 arm64 0.6.0-2 [58.6 kB]
Get: 79 http://deb.debian.org/debian bookworm/main arm64 libcassie1v5 arm64 1.0.9-3+b2 [37.5 kB]
Get: 80 http://deb.debian.org/debian bookworm/main arm64 cassiopee arm64 1.0.9-3+b2 [17.5 kB]
Get: 81 http://deb.debian.org/debian bookworm/main arm64 chrpath arm64 0.16-2+b1 [16.0 kB]
Get: 82 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 83 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB]
Get: 84 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 85 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 86 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B]
Get: 87 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 88 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 89 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB]
Get: 90 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB]
Get: 91 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB]
Get: 92 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 93 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 94 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB]
Get: 95 http://deb.debian.org/debian bookworm/main arm64 libgtk2.0-common all 2.24.33-2 [2700 kB]
Get: 96 http://deb.debian.org/debian bookworm/main arm64 libatk1.0-0 arm64 2.46.0-5 [47.4 kB]
Get: 97 http://deb.debian.org/debian bookworm/main arm64 libpixman-1-0 arm64 0.42.2-1 [470 kB]
Get: 98 http://deb.debian.org/debian bookworm/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB]
Get: 99 http://deb.debian.org/debian bookworm/main arm64 libbsd0 arm64 0.11.7-2 [115 kB]
Get: 100 http://deb.debian.org/debian bookworm/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB]
Get: 101 http://deb.debian.org/debian bookworm/main arm64 libxcb1 arm64 1.15-1 [143 kB]
Get: 102 http://deb.debian.org/debian bookworm/main arm64 libx11-data all 2:1.8.4-2+deb12u2 [292 kB]
Get: 103 http://deb.debian.org/debian bookworm/main arm64 libx11-6 arm64 2:1.8.4-2+deb12u2 [735 kB]
Get: 104 http://deb.debian.org/debian bookworm/main arm64 libxcb-render0 arm64 1.15-1 [115 kB]
Get: 105 http://deb.debian.org/debian bookworm/main arm64 libxcb-shm0 arm64 1.15-1 [106 kB]
Get: 106 http://deb.debian.org/debian bookworm/main arm64 libxext6 arm64 2:1.3.4-1+b1 [51.7 kB]
Get: 107 http://deb.debian.org/debian bookworm/main arm64 libxrender1 arm64 1:0.9.10-1.1 [32.0 kB]
Get: 108 http://deb.debian.org/debian bookworm/main arm64 libcairo2 arm64 1.16.0-7 [527 kB]
Get: 109 http://deb.debian.org/debian bookworm/main arm64 fontconfig arm64 2.14.1-4 [449 kB]
Get: 110 http://deb.debian.org/debian bookworm/main arm64 libfribidi0 arm64 1.0.8-2.1 [64.9 kB]
Get: 111 http://deb.debian.org/debian bookworm/main arm64 libthai-data all 0.1.29-1 [176 kB]
Get: 112 http://deb.debian.org/debian bookworm/main arm64 libdatrie1 arm64 0.2.13-2+b1 [42.6 kB]
Get: 113 http://deb.debian.org/debian bookworm/main arm64 libthai0 arm64 0.1.29-1 [56.2 kB]
Get: 114 http://deb.debian.org/debian bookworm/main arm64 libpango-1.0-0 arm64 1.50.12+ds-1 [200 kB]
Get: 115 http://deb.debian.org/debian bookworm/main arm64 libpangoft2-1.0-0 arm64 1.50.12+ds-1 [44.5 kB]
Get: 116 http://deb.debian.org/debian bookworm/main arm64 libpangocairo-1.0-0 arm64 1.50.12+ds-1 [32.0 kB]
Get: 117 http://deb.debian.org/debian bookworm/main arm64 libxcomposite1 arm64 1:0.4.5-1 [16.6 kB]
Get: 118 http://deb.debian.org/debian bookworm/main arm64 libxfixes3 arm64 1:6.0.0-2 [22.9 kB]
Get: 119 http://deb.debian.org/debian bookworm/main arm64 libxcursor1 arm64 1:1.2.1-1 [40.2 kB]
Get: 120 http://deb.debian.org/debian bookworm/main arm64 libxdamage1 arm64 1:1.1.6-1 [15.2 kB]
Get: 121 http://deb.debian.org/debian bookworm/main arm64 libxi6 arm64 2:1.8-1+b1 [82.3 kB]
Get: 122 http://deb.debian.org/debian bookworm/main arm64 libxinerama1 arm64 2:1.1.4-3 [17.8 kB]
Get: 123 http://deb.debian.org/debian bookworm/main arm64 libxrandr2 arm64 2:1.5.2-2+b1 [38.4 kB]
Get: 124 http://deb.debian.org/debian bookworm/main arm64 libgtk2.0-0 arm64 2.24.33-2 [1704 kB]
Get: 125 http://deb.debian.org/debian bookworm/main arm64 libglvnd0 arm64 1.6.0-1 [41.4 kB]
Get: 126 http://deb.debian.org/debian bookworm/main arm64 libdrm-common all 2.4.114-1 [7112 B]
Get: 127 http://deb.debian.org/debian bookworm/main arm64 libdrm2 arm64 2.4.114-1+b1 [36.7 kB]
Get: 128 http://deb.debian.org/debian bookworm/main arm64 libglapi-mesa arm64 22.3.6-1+deb12u1 [44.7 kB]
Get: 129 http://deb.debian.org/debian bookworm/main arm64 libx11-xcb1 arm64 2:1.8.4-2+deb12u2 [192 kB]
Get: 130 http://deb.debian.org/debian bookworm/main arm64 libxcb-dri2-0 arm64 1.15-1 [107 kB]
Get: 131 http://deb.debian.org/debian bookworm/main arm64 libxcb-dri3-0 arm64 1.15-1 [107 kB]
Get: 132 http://deb.debian.org/debian bookworm/main arm64 libxcb-glx0 arm64 1.15-1 [123 kB]
Get: 133 http://deb.debian.org/debian bookworm/main arm64 libxcb-present0 arm64 1.15-1 [106 kB]
Get: 134 http://deb.debian.org/debian bookworm/main arm64 libxcb-randr0 arm64 1.15-1 [117 kB]
Get: 135 http://deb.debian.org/debian bookworm/main arm64 libxcb-sync1 arm64 1.15-1 [109 kB]
Get: 136 http://deb.debian.org/debian bookworm/main arm64 libxcb-xfixes0 arm64 1.15-1 [110 kB]
Get: 137 http://deb.debian.org/debian bookworm/main arm64 libxshmfence1 arm64 1.3-1 [8712 B]
Get: 138 http://deb.debian.org/debian bookworm/main arm64 libxxf86vm1 arm64 1:1.1.4-1+b2 [20.1 kB]
Get: 139 http://deb.debian.org/debian bookworm/main arm64 libdrm-amdgpu1 arm64 2.4.114-1+b1 [20.4 kB]
Get: 140 http://deb.debian.org/debian bookworm/main arm64 libdrm-nouveau2 arm64 2.4.114-1+b1 [18.4 kB]
Get: 141 http://deb.debian.org/debian bookworm/main arm64 libdrm-radeon1 arm64 2.4.114-1+b1 [20.9 kB]
Get: 142 http://deb.debian.org/debian bookworm/main arm64 libedit2 arm64 3.1-20221030-2 [88.1 kB]
Get: 143 http://deb.debian.org/debian bookworm/main arm64 libz3-4 arm64 4.8.12-3.1 [6282 kB]
Get: 144 http://deb.debian.org/debian bookworm/main arm64 libllvm15 arm64 1:15.0.6-4+b1 [20.7 MB]
Get: 145 http://deb.debian.org/debian bookworm/main arm64 libsensors-config all 1:3.6.0-7.1 [14.3 kB]
Get: 146 http://deb.debian.org/debian bookworm/main arm64 libsensors5 arm64 1:3.6.0-7.1 [33.3 kB]
Get: 147 http://deb.debian.org/debian bookworm/main arm64 libgl1-mesa-dri arm64 22.3.6-1+deb12u1 [6278 kB]
Get: 148 http://deb.debian.org/debian bookworm/main arm64 libglx-mesa0 arm64 22.3.6-1+deb12u1 [146 kB]
Get: 149 http://deb.debian.org/debian bookworm/main arm64 libglx0 arm64 1.6.0-1 [30.8 kB]
Get: 150 http://deb.debian.org/debian bookworm/main arm64 libgl1 arm64 1.6.0-1 [90.2 kB]
Get: 151 http://deb.debian.org/debian bookworm/main arm64 libgif7 arm64 5.2.1-2.5 [46.7 kB]
Get: 152 http://deb.debian.org/debian bookworm/main arm64 x11-common all 1:7.7+23 [252 kB]
Get: 153 http://deb.debian.org/debian bookworm/main arm64 libxtst6 arm64 2:1.2.3-1.1 [27.8 kB]
Get: 154 http://deb.debian.org/debian bookworm/main arm64 openjdk-17-jre arm64 17.0.9+9-1~deb12u1 [173 kB]
Get: 155 http://deb.debian.org/debian bookworm/main arm64 default-jre arm64 2:1.17-74 [1056 B]
Get: 156 http://deb.debian.org/debian bookworm/main arm64 openjdk-17-jdk-headless arm64 17.0.9+9-1~deb12u1 [70.5 MB]
Get: 157 http://deb.debian.org/debian bookworm/main arm64 default-jdk-headless arm64 2:1.17-74 [1108 B]
Get: 158 http://deb.debian.org/debian bookworm/main arm64 openjdk-17-jdk arm64 17.0.9+9-1~deb12u1 [2826 kB]
Get: 159 http://deb.debian.org/debian bookworm/main arm64 default-jdk arm64 2:1.17-74 [1068 B]
Get: 160 http://deb.debian.org/debian bookworm/main arm64 fonts-lmodern all 2.005-1 [4540 kB]
Get: 161 http://deb.debian.org/debian bookworm/main arm64 libhamcrest-java all 2.2-1 [121 kB]
Get: 162 http://deb.debian.org/debian bookworm/main arm64 junit4 all 4.13.2-3 [348 kB]
Get: 163 http://deb.debian.org/debian bookworm/main arm64 libactivation-java all 1.2.0-2 [84.7 kB]
Get: 164 http://deb.debian.org/debian bookworm/main arm64 libapache-pom-java all 29-2 [5276 B]
Get: 165 http://deb.debian.org/debian bookworm/main arm64 libarchive13 arm64 3.6.2-1 [316 kB]
Get: 166 http://deb.debian.org/debian bookworm/main arm64 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B]
Get: 167 http://deb.debian.org/debian bookworm/main arm64 libcommons-pool-java all 1.6-4 [109 kB]
Get: 168 http://deb.debian.org/debian bookworm/main arm64 libcommons-dbcp-java all 1.4-8 [157 kB]
Get: 169 http://deb.debian.org/debian bookworm/main arm64 liberror-prone-java all 2.18.0-1 [22.5 kB]
Get: 170 http://deb.debian.org/debian bookworm/main arm64 libjsr305-java all 0.1~+svn49-11 [26.9 kB]
Get: 171 http://deb.debian.org/debian bookworm/main arm64 libguava-java all 31.1-1 [2613 kB]
Get: 172 http://deb.debian.org/debian bookworm/main arm64 libjgraph-java all 5.12.4.2+dfsg-7 [207 kB]
Get: 173 http://deb.debian.org/debian bookworm/main arm64 libjgrapht0.8-java all 0.8.3-6 [214 kB]
Get: 174 http://deb.debian.org/debian bookworm/main arm64 libbiojava1.9-java all 1:1.9.5+dfsg-3 [3154 kB]
Get: 175 http://deb.debian.org/debian bookworm/main arm64 libbiojava-java all 1:1.9.5+dfsg-3 [5428 B]
Get: 176 http://deb.debian.org/debian bookworm/main arm64 libcommons-cli-java all 1.5.0-1 [60.0 kB]
Get: 177 http://deb.debian.org/debian bookworm/main arm64 libcommons-collections3-java all 3.2.2-2 [526 kB]
Get: 178 http://deb.debian.org/debian bookworm/main arm64 libcommons-parent-java all 56-1 [10.8 kB]
Get: 179 http://deb.debian.org/debian bookworm/main arm64 libcommons-lang-java all 2.6-10 [273 kB]
Get: 180 http://deb.debian.org/debian bookworm/main arm64 libcommons-logging-java all 1.2-3 [62.4 kB]
Get: 181 http://deb.debian.org/debian bookworm/main arm64 libcommons-configuration-java all 1.10-6 [347 kB]
Get: 182 http://deb.debian.org/debian bookworm/main arm64 libfontbox-java all 1:1.8.16-2 [211 kB]
Get: 183 http://deb.debian.org/debian bookworm/main arm64 libice6 arm64 2:1.0.10-1 [55.6 kB]
Get: 184 http://deb.debian.org/debian bookworm/main arm64 libkpathsea6 arm64 2022.20220321.62855-5.1+deb12u1 [149 kB]
Get: 185 http://deb.debian.org/debian bookworm/main arm64 liblog4j1.2-java all 1.2.17-11 [444 kB]
Get: 186 http://deb.debian.org/debian bookworm/main arm64 libmail-java all 1.6.5-2 [701 kB]
Get: 187 http://deb.debian.org/debian bookworm/main arm64 libncurses6 arm64 6.4-4 [93.9 kB]
Get: 188 http://deb.debian.org/debian bookworm/main arm64 libossp-uuid16 arm64 1.6.2-1.5+b11 [39.9 kB]
Get: 189 http://deb.debian.org/debian bookworm/main arm64 libpaper1 arm64 1.1.29 [12.6 kB]
Get: 190 http://deb.debian.org/debian bookworm/main arm64 libpaper-utils arm64 1.1.29 [8776 B]
Get: 191 http://deb.debian.org/debian bookworm/main arm64 libpdfbox-java all 1:1.8.16-2 [5205 kB]
Get: 192 http://deb.debian.org/debian bookworm/main arm64 libptexenc1 arm64 2022.20220321.62855-5.1+deb12u1 [43.0 kB]
Get: 193 http://deb.debian.org/debian bookworm/main arm64 rubygems-integration all 1.18 [6704 B]
Get: 194 http://deb.debian.org/debian bookworm/main arm64 ruby3.1 arm64 3.1.2-7 [663 kB]
Get: 195 http://deb.debian.org/debian bookworm/main arm64 ruby-rubygems all 3.3.15-2 [293 kB]
Get: 196 http://deb.debian.org/debian bookworm/main arm64 ruby arm64 1:3.1 [5868 B]
Get: 197 http://deb.debian.org/debian bookworm/main arm64 rake all 13.0.6-3 [83.9 kB]
Get: 198 http://deb.debian.org/debian bookworm/main arm64 ruby-net-telnet all 0.2.0-1 [13.1 kB]
Get: 199 http://deb.debian.org/debian bookworm/main arm64 ruby-webrick all 1.8.1-1 [51.4 kB]
Get: 200 http://deb.debian.org/debian bookworm/main arm64 ruby-xmlrpc all 0.3.2-2 [24.4 kB]
Get: 201 http://deb.debian.org/debian bookworm/main arm64 ruby-sdbm arm64 1.0.0-5+b1 [14.5 kB]
Get: 202 http://deb.debian.org/debian bookworm/main arm64 libyaml-0-2 arm64 0.2.5-1 [50.4 kB]
Get: 203 http://deb.debian.org/debian bookworm/main arm64 libruby3.1 arm64 3.1.2-7 [5248 kB]
Get: 204 http://deb.debian.org/debian bookworm/main arm64 libruby arm64 1:3.1 [4968 B]
Get: 205 http://deb.debian.org/debian bookworm/main arm64 libsm6 arm64 2:1.2.3-1 [34.0 kB]
Get: 206 http://deb.debian.org/debian bookworm/main arm64 libsynctex2 arm64 2022.20220321.62855-5.1+deb12u1 [57.3 kB]
Get: 207 http://deb.debian.org/debian bookworm/main arm64 libtcmalloc-minimal4 arm64 2.10-1 [88.5 kB]
Get: 208 http://deb.debian.org/debian bookworm/main arm64 libteckit0 arm64 2.5.11+ds1-1+b1 [299 kB]
Get: 209 http://deb.debian.org/debian bookworm/main arm64 libtexlua53-5 arm64 2022.20220321.62855-5.1+deb12u1 [103 kB]
Get: 210 http://deb.debian.org/debian bookworm/main arm64 libxml-commons-external-java all 1.4.01-5 [240 kB]
Get: 211 http://deb.debian.org/debian bookworm/main arm64 libxml-commons-resolver1.1-java all 1.2-11 [98.3 kB]
Get: 212 http://deb.debian.org/debian bookworm/main arm64 libxerces2-java all 2.12.2-1 [1440 kB]
Get: 213 http://deb.debian.org/debian bookworm/main arm64 libxalan2-java all 2.7.2-4 [3419 kB]
Get: 214 http://deb.debian.org/debian bookworm/main arm64 libxt6 arm64 1:1.2.1-1.1 [172 kB]
Get: 215 http://deb.debian.org/debian bookworm/main arm64 libxmu6 arm64 2:1.1.3-3 [57.2 kB]
Get: 216 http://deb.debian.org/debian bookworm/main arm64 libxpm4 arm64 1:3.5.12-1.1+deb12u1 [45.4 kB]
Get: 217 http://deb.debian.org/debian bookworm/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB]
Get: 218 http://deb.debian.org/debian bookworm/main arm64 libxft2 arm64 2.3.6-1 [58.7 kB]
Get: 219 http://deb.debian.org/debian bookworm/main arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [58.3 kB]
Get: 220 http://deb.debian.org/debian bookworm/main arm64 tex-common all 6.18 [32.5 kB]
Get: 221 http://deb.debian.org/debian bookworm/main arm64 preview-latex-style all 12.2-1 [201 kB]
Get: 222 http://deb.debian.org/debian bookworm/main arm64 ruby-text all 1.3.1-1 [13.4 kB]
Get: 223 http://deb.debian.org/debian bookworm/main arm64 ruby-cassiopee all 0.1.13-1.1 [11.7 kB]
Get: 224 http://deb.debian.org/debian bookworm/main arm64 swi-prolog-core arm64 9.0.4+dfsg-2 [1376 kB]
Get: 225 http://deb.debian.org/debian bookworm/main arm64 swi-prolog-doc all 9.0.4+dfsg-2 [1557 kB]
Get: 226 http://deb.debian.org/debian bookworm/main arm64 swi-prolog-core-packages arm64 9.0.4+dfsg-2 [1307 kB]
Get: 227 http://deb.debian.org/debian bookworm/main arm64 swi-prolog-nox arm64 9.0.4+dfsg-2 [163 kB]
Get: 228 http://deb.debian.org/debian bookworm/main arm64 swi-prolog-x arm64 9.0.4+dfsg-2 [2065 kB]
Get: 229 http://deb.debian.org/debian bookworm/main arm64 swi-prolog arm64 9.0.4+dfsg-2 [12.9 kB]
Get: 230 http://deb.debian.org/debian bookworm/main arm64 t1utils arm64 1.41-4 [59.8 kB]
Get: 231 http://deb.debian.org/debian bookworm/main arm64 texlive-binaries arm64 2022.20220321.62855-5.1+deb12u1 [7544 kB]
Get: 232 http://deb.debian.org/debian bookworm/main arm64 xdg-utils all 1.1.3-4.1 [75.5 kB]
Get: 233 http://deb.debian.org/debian bookworm/main arm64 texlive-base all 2022.20230122-3 [21.9 MB]
Get: 234 http://deb.debian.org/debian bookworm/main arm64 texlive-fonts-recommended all 2022.20230122-3 [4988 kB]
Get: 235 http://deb.debian.org/debian bookworm/main arm64 texlive-latex-base all 2022.20230122-3 [1182 kB]
Get: 236 http://deb.debian.org/debian bookworm/main arm64 texlive-latex-recommended all 2022.20230122-3 [8880 kB]
Get: 237 http://deb.debian.org/debian bookworm/main arm64 texlive all 2022.20230122-3 [18.2 kB]
Get: 238 http://deb.debian.org/debian bookworm/main arm64 texlive-pictures all 2022.20230122-3 [15.8 MB]
Get: 239 http://deb.debian.org/debian bookworm/main arm64 texlive-latex-extra all 2022.20230122-4 [19.2 MB]
Get: 240 http://deb.debian.org/debian bookworm/main arm64 texlive-plain-generic all 2022.20230122-4 [28.9 MB]
Fetched 355 MB in 2s (197 MB/s)
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140 added, 0 removed; done.
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No JRE found. Skipping Java certificates setup.
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update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
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Setting up texlive-base (2022.20230122-3) ...
tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
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Setting up ruby-cassiopee (0.1.13-1.1) ...
Processing triggers for libc-bin (2.36-9+deb12u3) ...
Processing triggers for ca-certificates-java (20230710~deb12u1) ...
Adding debian:ACCVRAIZ1.pem
Adding debian:AC_RAIZ_FNMT-RCM.pem
Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem
Adding debian:ANF_Secure_Server_Root_CA.pem
Adding debian:Actalis_Authentication_Root_CA.pem
Adding debian:AffirmTrust_Commercial.pem
Adding debian:AffirmTrust_Networking.pem
Adding debian:AffirmTrust_Premium.pem
Adding debian:AffirmTrust_Premium_ECC.pem
Adding debian:Amazon_Root_CA_1.pem
Adding debian:Amazon_Root_CA_2.pem
Adding debian:Amazon_Root_CA_3.pem
Adding debian:Amazon_Root_CA_4.pem
Adding debian:Atos_TrustedRoot_2011.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068_2.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:Buypass_Class_2_Root_CA.pem
Adding debian:Buypass_Class_3_Root_CA.pem
Adding debian:CA_Disig_Root_R2.pem
Adding debian:CFCA_EV_ROOT.pem
Adding debian:COMODO_Certification_Authority.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debian:COMODO_RSA_Certification_Authority.pem
Adding debian:Certainly_Root_E1.pem
Adding debian:Certainly_Root_R1.pem
Adding debian:Certigna.pem
Adding debian:Certigna_Root_CA.pem
Adding debian:Certum_EC-384_CA.pem
Adding debian:Certum_Trusted_Network_CA.pem
Adding debian:Certum_Trusted_Network_CA_2.pem
Adding debian:Certum_Trusted_Root_CA.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:D-TRUST_BR_Root_CA_1_2020.pem
Adding debian:D-TRUST_EV_Root_CA_1_2020.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
Adding debian:DigiCert_Assured_ID_Root_CA.pem
Adding debian:DigiCert_Assured_ID_Root_G2.pem
Adding debian:DigiCert_Assured_ID_Root_G3.pem
Adding debian:DigiCert_Global_Root_CA.pem
Adding debian:DigiCert_Global_Root_G2.pem
Adding debian:DigiCert_Global_Root_G3.pem
Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem
Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem
Adding debian:DigiCert_Trusted_Root_G4.pem
Adding debian:E-Tugra_Certification_Authority.pem
Adding debian:E-Tugra_Global_Root_CA_ECC_v3.pem
Adding debian:E-Tugra_Global_Root_CA_RSA_v3.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
Adding debian:Entrust_Root_Certification_Authority_-_G4.pem
Adding debian:GDCA_TrustAUTH_R5_ROOT.pem
Adding debian:GLOBALTRUST_2020.pem
Adding debian:GTS_Root_R1.pem
Adding debian:GTS_Root_R2.pem
Adding debian:GTS_Root_R3.pem
Adding debian:GTS_Root_R4.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:GlobalSign_Root_CA_-_R6.pem
Adding debian:GlobalSign_Root_E46.pem
Adding debian:GlobalSign_Root_R46.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem
Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
Adding debian:HiPKI_Root_CA_-_G1.pem
Adding debian:Hongkong_Post_Root_CA_1.pem
Adding debian:Hongkong_Post_Root_CA_3.pem
Adding debian:ISRG_Root_X1.pem
Adding debian:ISRG_Root_X2.pem
Adding debian:IdenTrust_Commercial_Root_CA_1.pem
Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
Adding debian:Izenpe.com.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem
Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem
Adding debian:NAVER_Global_Root_Certification_Authority.pem
Adding debian:NetLock_Arany_=Class_Gold=_FÅ‘tanúsÃtvány.pem
Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem
Adding debian:QuoVadis_Root_CA_1_G3.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:QuoVadis_Root_CA_2_G3.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:QuoVadis_Root_CA_3_G3.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem
Adding debian:SSL.com_Root_Certification_Authority_ECC.pem
Adding debian:SSL.com_Root_Certification_Authority_RSA.pem
Adding debian:SZAFIR_ROOT_CA2.pem
Adding debian:SecureSign_RootCA11.pem
Adding debian:SecureTrust_CA.pem
Adding debian:Secure_Global_CA.pem
Adding debian:Security_Communication_ECC_RootCA1.pem
Adding debian:Security_Communication_RootCA2.pem
Adding debian:Security_Communication_RootCA3.pem
Adding debian:Security_Communication_Root_CA.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
Adding debian:TWCA_Global_Root_CA.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:TeliaSonera_Root_CA_v1.pem
Adding debian:Telia_Root_CA_v2.pem
Adding debian:TrustCor_ECA-1.pem
Adding debian:TrustCor_RootCert_CA-1.pem
Adding debian:TrustCor_RootCert_CA-2.pem
Adding debian:Trustwave_Global_Certification_Authority.pem
Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem
Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem
Adding debian:TunTrust_Root_CA.pem
Adding debian:UCA_Extended_Validation_Root.pem
Adding debian:UCA_Global_G2_Root.pem
Adding debian:USERTrust_ECC_Certification_Authority.pem
Adding debian:USERTrust_RSA_Certification_Authority.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:certSIGN_ROOT_CA.pem
Adding debian:certSIGN_Root_CA_G2.pem
Adding debian:e-Szigno_Root_CA_2017.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:emSign_ECC_Root_CA_-_C3.pem
Adding debian:emSign_ECC_Root_CA_-_G3.pem
Adding debian:emSign_Root_CA_-_C1.pem
Adding debian:emSign_Root_CA_-_G1.pem
Adding debian:vTrus_ECC_Root_CA.pem
Adding debian:vTrus_Root_CA.pem
done.
Setting up openjdk-17-jdk-headless:arm64 (17.0.9+9-1~deb12u1) ...
update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jar to provide /usr/bin/jar (jar) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/javac to provide /usr/bin/javac (javac) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/javap to provide /usr/bin/javap (javap) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jps to provide /usr/bin/jps (jps) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode
update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode
Setting up antlr3 (3.5.3-1) ...
Setting up ant (1.10.13-1) ...
Setting up junit4 (4.13.2-3) ...
Setting up default-jre-headless (2:1.17-74) ...
Setting up openjdk-17-jre:arm64 (17.0.9+9-1~deb12u1) ...
Setting up default-jre (2:1.17-74) ...
Setting up openjdk-17-jdk:arm64 (17.0.9+9-1~deb12u1) ...
update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode
Setting up ant-optional (1.10.13-1) ...
Setting up default-jdk-headless (2:1.17-74) ...
Setting up default-jdk (2:1.17-74) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for tex-common (6.18) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
This may take some time... done.
Processing triggers for ca-certificates-java (20230710~deb12u1) ...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: user script /srv/workspace/pbuilder/645603/tmp/hooks/A99_set_merged_usr starting
Not re-configuring usrmerge for bookworm
I: user script /srv/workspace/pbuilder/645603/tmp/hooks/A99_set_merged_usr finished
hostname: Name or service not known
I: Running cd /build/reproducible-path/logol-1.7.9+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../logol_1.7.9+dfsg-6_source.changes
dpkg-buildpackage: info: source package logol
dpkg-buildpackage: info: source version 1.7.9+dfsg-6
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Olivier Sallou <osallou@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/reproducible-path/logol-1.7.9+dfsg'
if [ ! -e test/tmp ]; then mkdir -p test/tmp; fi
if [ ! -e test/results ]; then mkdir -p test/results; fi
if [ -e prolog/process.so ]; then rm -f prolog/process.so; fi
dh_auto_clean
ant clean
Buildfile: /build/reproducible-path/logol-1.7.9+dfsg/build.xml
[taskdef] Could not load definitions from resource tasks.properties. It could not be found.
clean:
BUILD SUCCESSFUL
Total time: 0 seconds
make[1]: Leaving directory '/build/reproducible-path/logol-1.7.9+dfsg'
debian/rules override_dh_clean
make[1]: Entering directory '/build/reproducible-path/logol-1.7.9+dfsg'
if [ -e tools/pldoc.sty.upstream ]; then mv tools/pldoc.sty.upstream tools/pldoc.sty; fi
if [ ! -e test/tmp ]; then mkdir -p test/tmp; fi
if [ ! -e test/results ]; then mkdir -p test/results; fi
dh_clean
rm -f Swi*.xml
rm -f prolog/*.exe
rm -f lib/*.jar
rm -f *.log
rm -f src/org/irisa/genouest/logol/parser/*
rm -f tools/suffixSearch.sh
rm -rf test/tmp
rm -rf test/results
make[1]: Leaving directory '/build/reproducible-path/logol-1.7.9+dfsg'
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
debian/rules override_dh_auto_build
make[1]: Entering directory '/build/reproducible-path/logol-1.7.9+dfsg'
if [ ! -e lib ]; then mkdir -p lib; fi
if [ ! -e prolog/process.so ]; then ln -s /usr/lib/swi-prolog/lib/aarch64-linux/process.so prolog/process.so; fi
mv tools/pldoc.sty tools/pldoc.sty.upstream
dh_auto_build -- -Dant.build.javac.source=1.5 -Dant.build.javac.target=1.5
ant -Duser.name debian -Dant.build.javac.source=1.5 -Dant.build.javac.target=1.5
Buildfile: /build/reproducible-path/logol-1.7.9+dfsg/build.xml
[taskdef] Could not load definitions from resource tasks.properties. It could not be found.
updatemod:
setup:
compile_swi_exe:
[exec] PLBASE="/usr/lib/swi-prolog"
[exec] PLARCH="aarch64-linux"
[exec] PLSOEXT="so"
[exec] PLLIBDIR="/usr/lib/swi-prolog/lib/aarch64-linux"
[exec] PLLIB="-lswipl"
[exec] PLTHREADS="yes"
[exec] logolSwiMain.c: In function 'main':
[exec] logolSwiMain.c:50:18: warning: ignoring return value of 'PL_put_string_chars' declared with attribute 'warn_unused_result' [-Wunused-result]
[exec] 50 | PL_put_string_chars(ResultFile,argv[2]);
[exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[exec] logolSwiMain.c:52:18: warning: ignoring return value of 'PL_next_solution' declared with attribute 'warn_unused_result' [-Wunused-result]
[exec] 52 | PL_next_solution(query);
[exec] | ^~~~~~~~~~~~~~~~~~~~~~~
[exec] logolSwiMain.c:58:18: warning: ignoring return value of 'PL_put_string_chars' declared with attribute 'warn_unused_result' [-Wunused-result]
[exec] 58 | PL_put_string_chars(File,argv[1]);
[exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[exec] logolSwiMain.c:62:18: warning: ignoring return value of 'PL_put_integer' declared with attribute 'warn_unused_result' [-Wunused-result]
[exec] 62 | PL_put_integer(HeaderSize, header);
[exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[exec] logolSwiMain.c:67:18: warning: ignoring return value of 'PL_next_solution' declared with attribute 'warn_unused_result' [-Wunused-result]
[exec] 67 | PL_next_solution(query);
[exec] | ^~~~~~~~~~~~~~~~~~~~~~~
[exec] logolSwiMain.c:76:18: warning: ignoring return value of 'PL_put_string_chars' declared with attribute 'warn_unused_result' [-Wunused-result]
[exec] 76 | PL_put_string_chars(LogolFile,argv[6]);
[exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[exec] logolSwiMain.c:78:18: warning: ignoring return value of 'PL_put_string_chars' declared with attribute 'warn_unused_result' [-Wunused-result]
[exec] 78 | PL_put_string_chars(InFile,argv[1]);
[exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[exec] logolSwiMain.c:80:18: warning: ignoring return value of 'PL_put_string_chars' declared with attribute 'warn_unused_result' [-Wunused-result]
[exec] 80 | PL_put_string_chars(OutFile,argv[2]);
[exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[exec] logolSwiMain.c:82:18: warning: ignoring return value of 'PL_put_integer' declared with attribute 'warn_unused_result' [-Wunused-result]
[exec] 82 | PL_put_integer(Offset,offset);
[exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[exec] logolSwiMain.c:102:18: warning: ignoring return value of 'PL_next_solution' declared with attribute 'warn_unused_result' [-Wunused-result]
[exec] 102 | PL_next_solution(query);
[exec] | ^~~~~~~~~~~~~~~~~~~~~~~
[exec] logolSwiMain.c:120:18: warning: ignoring return value of 'PL_put_string_chars' declared with attribute 'warn_unused_result' [-Wunused-result]
[exec] 120 | PL_put_string_chars(ResultFile,argv[2]);
[exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[exec] logolSwiMain.c:122:18: warning: ignoring return value of 'PL_next_solution' declared with attribute 'warn_unused_result' [-Wunused-result]
[exec] 122 | PL_next_solution(query);
[exec] | ^~~~~~~~~~~~~~~~~~~~~~~
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/sicstus.pl:495:
[exec] Warning: Singleton variables: [Before,Length,CountPos,CountLength]
[exec] ERROR: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:7:
[exec] ERROR: catch/3: Unknown procedure: module/3
[exec] ERROR: However, there are definitions for:
[exec] ERROR: module/1
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:7:
[exec] Warning: Goal (directive) failed: user:module(logol,[writeFinalMatches/0,isMin/5,replaceMatch/4,appendMatch/3,getCounter/1,config/1,optimalmatch/5,matchstore/2,isMax/3,parseResults/2,checkAlphabetPercentage/3,mapListExact/2,mapListGlobal/2,mapListLocal/2,mapListLocal0/2,matchExist/2,mapModels/3,notpred_pos/6,between/3,notexact_pos/6,notexact/3,matchExist/1,mapModels/2,mapList/2,mydb/1,matchlist/2,isexactwithgaponly/5,isexactwithgaponly_pos/5,setParent/2,getParent/2,logData/2,logolMain/5,cut_sequence/3,isequal/2,isexact_pos/4,isexactwithgapanderror_pos/5,isexactwitherroronly_pos/5,spacer_withresult_pos/5,wordSize_pos/4,wordContent_pos/4,checkPosition_pos/4,anySpacer_pos/7,repeatPredicate_pos/14,testOverlap_pos/5,getsuffixmatch_pos/12,getWordContent/4,openSequenceStream/2,closeSequenceStream/0,getCharsFromPosition/3,getNChar/3,resetParamList/3,getKnownVariables/2,getPosition/3,myCost/4,getDistance/3,initResultFile/1,closeResultFile/1,getParentVariable/2,is4me/5,outputfile/1,writeallresult/2,maxsize/1,getresult/2,offset/1,setSequence/2,computeCost/2,getsuffixmatch/12,writeSequence/2,sequenceData/3,suffixmatch/9,repeatPredicate/14,anySpacer/5,anySpacer/7,any/2,isoverlap/5,morphism/3,spacer_withresult/5,isexact/3,isexact/4,isexact/5,isexactwithgapanderror/4,isexactwithgapanderror/5,isexactwitherroronly/4,isexactwitherroronly/5,matrix/3,iscompequal/2,getcomplement/2,getreversecomplement/2,applymorphism/4,checkCost/4,cost/4,parentalCost/4,varDefinition/5,saveVariable/8,getVariable/9,removeVariable/1,wordSize/3,wordSize/4,percent/3,percent2int/3,checkCost/4,checkCost/5,checkPosition/3,checkPosition/5,checkRelativePosition/4,getContent/3,getContent/4,pushResult/2,countAlphabet/4,isexactwithdistinctgapanderror_pos/7,logolShell/1,cassiopee_pos/14,cassiopee/11],[])
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:206:
[exec] Warning: Singleton variables: [Max]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:221:
[exec] Warning: Singleton variables: [Z]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:304:
[exec] Warning: Singleton variables: [Tmp1,Tmp2,TmpOutput,Continue]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:304:
[exec] Warning: Singleton variable in branch: Tmp1
[exec] Warning: Singleton variable in branch: Tmp2
[exec] Warning: Singleton variable in branch: TmpOutput
[exec] Warning: Singleton variable in branch: Continue
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:394:
[exec] Warning: Singleton variables: [SequenceLength]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:408:
[exec] Warning: Singleton variables: [Unique,Out,Exit]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:434:
[exec] Warning: Singleton variables: [SequenceLength]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:472:
[exec] Warning: Singleton variables: [NewPos]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:472:
[exec] Warning: Singleton variable in branch: NewPos
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:514:
[exec] Warning: Singleton variables: [VARID,TYPE,REF,REFOTHER]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:517:
[exec] Warning: Singleton variables: [VARID,TYPE,REF,REFOTHER]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:556:
[exec] Warning: Singleton variables: [Z,Pred,Spacer,Min,Max,CountSpacer,NumberSpacer]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:575:
[exec] Warning: Singleton variables: [Z,Pred,Spacer,CountSpacer,NumberSpacer]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:590:
[exec] Warning: Singleton variables: [Tmp1,Tmp2,IntermediateSpacer,TmpOutput,Continue]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:590:
[exec] Warning: Singleton variable in branch: Tmp1
[exec] Warning: Singleton variable in branch: Tmp2
[exec] Warning: Singleton variable in branch: IntermediateSpacer
[exec] Warning: Singleton variable in branch: TmpOutput
[exec] Warning: Singleton variable in branch: Continue
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:673:
[exec] Warning: Singleton variables: [InputLength]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:679:
[exec] Warning: Singleton variables: [Pred,Z,PrevMatchLength,Count,OutCount]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:724:
[exec] Warning: Singleton variables: [X,Y,E1,E2,N,Max,Z]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:964:
[exec] Warning: Singleton variables: [Exit]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:993:
[exec] Warning: Singleton variables: [Word]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:1024:
[exec] Warning: Singleton variables: [N,Min,Max,Z]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:1068:
[exec] Warning: Singleton variables: [E,Z,Spacer,CountSpacer,NumberSpacer]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:1162:
[exec] Warning: Singleton variables: [Errors]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:1266:
[exec] Warning: Singleton variables: [Morph,Reverse]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:1270:
[exec] Warning: Singleton variables: [Morph]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:1281:
[exec] Warning: Singleton variables: [Morph,Prev,CX,CZ]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:1317:
[exec] Warning: Singleton variables: [Matrix,MatrixAtom]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:1341:
[exec] Warning: Singleton variables: [Matrix,MatrixAtom]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:1645:
[exec] Warning: Singleton variables: [Name]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2036:
[exec] Warning: Singleton variables: [Matrix]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2077:
[exec] Warning: Singleton variables: [Type]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2180:
[exec] Warning: Singleton variables: [Exit]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2335:
[exec] Warning: Singleton variables: [FilterPredicate]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2350:
[exec] Warning: Singleton variables: [Name,Content,Size,Level,Config]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2380:
[exec] Warning: Singleton variables: [Name,Content,Size,Level,Errors,Config]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2395:
[exec] Warning: Singleton variables: [Name,Content,Size,Info,Level,Errors,Config]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2435:
[exec] Warning: Singleton variables: [Z]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2435:
[exec] Warning: Singleton variable in branch: Max
[exec] Warning: Singleton variable in branch: Z
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2470:
[exec] Warning: Singleton variables: [VarId]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2498:
[exec] Warning: Singleton variables: [X,Y,Z]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2516:
[exec] Warning: Singleton variables: [MinSpacer,MaxSpacer,X,Y,Z]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2534:
[exec] Warning: Singleton variables: [ALPHABET]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2576:
[exec] Warning: Singleton variables: [MATCH,A,B,NEWID]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2604:
[exec] Warning: Singleton variables: [OPTVAR,ID]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2608:
[exec] Warning: Singleton variables: [OPTVAR,ID]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2624:
[exec] Warning: Singleton variables: [OPTVAR,ID,NEWID]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2644:
[exec] Warning: Singleton variables: [ID]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2647:
[exec] Warning: Singleton variables: [OPTVAR]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2653:
[exec] Warning: Singleton variables: [OPTVAR,ID,NEWID]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2701:
[exec] Warning: Singleton variables: [DATA]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2752:
[exec] Warning: Singleton variables: [MATCH]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2755:
[exec] Warning: Singleton variables: [MATCH]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2758:
[exec] Warning: Singleton variables: [MATCH]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2761:
[exec] Warning: Singleton variables: [MATCH,ALPHABET]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2766:
[exec] Warning: Singleton variables: [VAR,VARFOUND]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2769:
[exec] Warning: Singleton variables: [VAR,VARFOUND]
[exec] % Disabled autoloading (loaded 42 files)
[exec] % Disabled autoloading (loaded 2 files)
[exec] % Disabled autoloading (loaded 0 files)
[exec] eval `swipl --dump-runtime-variables`
[exec] /usr/bin/cc -c -D_REENTRANT -D__SWI_PROLOG__ -D__SWI_EMBEDDED__ -I/usr/lib/swi-prolog/include -o logolSwiMain.o logolSwiMain.c
[exec] /usr/bin/cc -o logol.exe -Wl,-rpath=/usr/lib/swi-prolog/lib/aarch64-linux logolSwiMain.o -L/usr/lib/swi-prolog/lib/aarch64-linux -lswipl
[exec] swipl -f none -F none -g true -t "consult(['sicstus.pl','logol.pl']),qsave_program('pltmp-689166',[goal=true,toplevel=prolog,init_file='swi-logol.pl'])"
[exec] cat pltmp-689166 >> logol.exe
[exec] chmod 755 logol.exe
[exec] rm logolSwiMain.o
[exec] rm pltmp-689166
[exec] % halt
[exec] PLBASE="/usr/lib/swi-prolog"
[exec] PLARCH="aarch64-linux"
[exec] PLSOEXT="so"
[exec] PLLIBDIR="/usr/lib/swi-prolog/lib/aarch64-linux"
[exec] PLLIB="-lswipl"
[exec] PLTHREADS="yes"
[exec] preSwiMain.c: In function 'main':
[exec] preSwiMain.c:40:18: warning: ignoring return value of 'PL_put_string_chars' declared with attribute 'warn_unused_result' [-Wunused-result]
[exec] 40 | PL_put_string_chars(LogolFile1,argv[1]);
[exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[exec] preSwiMain.c:42:18: warning: ignoring return value of 'PL_put_string_chars' declared with attribute 'warn_unused_result' [-Wunused-result]
[exec] 42 | PL_put_string_chars(LogolFile2,argv[1]);
[exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[exec] preSwiMain.c:44:18: warning: ignoring return value of 'PL_put_string_chars' declared with attribute 'warn_unused_result' [-Wunused-result]
[exec] 44 | PL_put_string_chars(LogolFile3,argv[1]);
[exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[exec] preSwiMain.c:46:18: warning: ignoring return value of 'PL_put_string_chars' declared with attribute 'warn_unused_result' [-Wunused-result]
[exec] 46 | PL_put_string_chars(LogolFile4,argv[1]);
[exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/sicstus.pl:495:
[exec] Warning: Singleton variables: [Before,Length,CountPos,CountLength]
[exec] ERROR: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:7:
[exec] ERROR: catch/3: Unknown procedure: module/3
[exec] ERROR: However, there are definitions for:
[exec] ERROR: module/1
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:7:
[exec] Warning: Goal (directive) failed: user:module(logol,[writeFinalMatches/0,isMin/5,replaceMatch/4,appendMatch/3,getCounter/1,config/1,optimalmatch/5,matchstore/2,isMax/3,parseResults/2,checkAlphabetPercentage/3,mapListExact/2,mapListGlobal/2,mapListLocal/2,mapListLocal0/2,matchExist/2,mapModels/3,notpred_pos/6,between/3,notexact_pos/6,notexact/3,matchExist/1,mapModels/2,mapList/2,mydb/1,matchlist/2,isexactwithgaponly/5,isexactwithgaponly_pos/5,setParent/2,getParent/2,logData/2,logolMain/5,cut_sequence/3,isequal/2,isexact_pos/4,isexactwithgapanderror_pos/5,isexactwitherroronly_pos/5,spacer_withresult_pos/5,wordSize_pos/4,wordContent_pos/4,checkPosition_pos/4,anySpacer_pos/7,repeatPredicate_pos/14,testOverlap_pos/5,getsuffixmatch_pos/12,getWordContent/4,openSequenceStream/2,closeSequenceStream/0,getCharsFromPosition/3,getNChar/3,resetParamList/3,getKnownVariables/2,getPosition/3,myCost/4,getDistance/3,initResultFile/1,closeResultFile/1,getParentVariable/2,is4me/5,outputfile/1,writeallresult/2,maxsize/1,getresult/2,offset/1,setSequence/2,computeCost/2,getsuffixmatch/12,writeSequence/2,sequenceData/3,suffixmatch/9,repeatPredicate/14,anySpacer/5,anySpacer/7,any/2,isoverlap/5,morphism/3,spacer_withresult/5,isexact/3,isexact/4,isexact/5,isexactwithgapanderror/4,isexactwithgapanderror/5,isexactwitherroronly/4,isexactwitherroronly/5,matrix/3,iscompequal/2,getcomplement/2,getreversecomplement/2,applymorphism/4,checkCost/4,cost/4,parentalCost/4,varDefinition/5,saveVariable/8,getVariable/9,removeVariable/1,wordSize/3,wordSize/4,percent/3,percent2int/3,checkCost/4,checkCost/5,checkPosition/3,checkPosition/5,checkRelativePosition/4,getContent/3,getContent/4,pushResult/2,countAlphabet/4,isexactwithdistinctgapanderror_pos/7,logolShell/1,cassiopee_pos/14,cassiopee/11],[])
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:206:
[exec] Warning: Singleton variables: [Max]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:221:
[exec] Warning: Singleton variables: [Z]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:304:
[exec] Warning: Singleton variables: [Tmp1,Tmp2,TmpOutput,Continue]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:304:
[exec] Warning: Singleton variable in branch: Tmp1
[exec] Warning: Singleton variable in branch: Tmp2
[exec] Warning: Singleton variable in branch: TmpOutput
[exec] Warning: Singleton variable in branch: Continue
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:394:
[exec] Warning: Singleton variables: [SequenceLength]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:408:
[exec] Warning: Singleton variables: [Unique,Out,Exit]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:434:
[exec] Warning: Singleton variables: [SequenceLength]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:472:
[exec] Warning: Singleton variables: [NewPos]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:472:
[exec] Warning: Singleton variable in branch: NewPos
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:514:
[exec] Warning: Singleton variables: [VARID,TYPE,REF,REFOTHER]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:517:
[exec] Warning: Singleton variables: [VARID,TYPE,REF,REFOTHER]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:556:
[exec] Warning: Singleton variables: [Z,Pred,Spacer,Min,Max,CountSpacer,NumberSpacer]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:575:
[exec] Warning: Singleton variables: [Z,Pred,Spacer,CountSpacer,NumberSpacer]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:590:
[exec] Warning: Singleton variables: [Tmp1,Tmp2,IntermediateSpacer,TmpOutput,Continue]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:590:
[exec] Warning: Singleton variable in branch: Tmp1
[exec] Warning: Singleton variable in branch: Tmp2
[exec] Warning: Singleton variable in branch: IntermediateSpacer
[exec] Warning: Singleton variable in branch: TmpOutput
[exec] Warning: Singleton variable in branch: Continue
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:673:
[exec] Warning: Singleton variables: [InputLength]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:679:
[exec] Warning: Singleton variables: [Pred,Z,PrevMatchLength,Count,OutCount]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:724:
[exec] Warning: Singleton variables: [X,Y,E1,E2,N,Max,Z]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:964:
[exec] Warning: Singleton variables: [Exit]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:993:
[exec] Warning: Singleton variables: [Word]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:1024:
[exec] Warning: Singleton variables: [N,Min,Max,Z]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:1068:
[exec] Warning: Singleton variables: [E,Z,Spacer,CountSpacer,NumberSpacer]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:1162:
[exec] Warning: Singleton variables: [Errors]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:1266:
[exec] Warning: Singleton variables: [Morph,Reverse]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:1270:
[exec] Warning: Singleton variables: [Morph]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:1281:
[exec] Warning: Singleton variables: [Morph,Prev,CX,CZ]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:1317:
[exec] Warning: Singleton variables: [Matrix,MatrixAtom]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:1341:
[exec] Warning: Singleton variables: [Matrix,MatrixAtom]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:1645:
[exec] Warning: Singleton variables: [Name]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2036:
[exec] Warning: Singleton variables: [Matrix]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2077:
[exec] Warning: Singleton variables: [Type]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2180:
[exec] Warning: Singleton variables: [Exit]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2335:
[exec] Warning: Singleton variables: [FilterPredicate]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2350:
[exec] Warning: Singleton variables: [Name,Content,Size,Level,Config]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2380:
[exec] Warning: Singleton variables: [Name,Content,Size,Level,Errors,Config]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2395:
[exec] Warning: Singleton variables: [Name,Content,Size,Info,Level,Errors,Config]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2435:
[exec] Warning: Singleton variables: [Z]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2435:
[exec] Warning: Singleton variable in branch: Max
[exec] Warning: Singleton variable in branch: Z
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2470:
[exec] Warning: Singleton variables: [VarId]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2498:
[exec] Warning: Singleton variables: [X,Y,Z]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2516:
[exec] Warning: Singleton variables: [MinSpacer,MaxSpacer,X,Y,Z]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2534:
[exec] Warning: Singleton variables: [ALPHABET]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2576:
[exec] Warning: Singleton variables: [MATCH,A,B,NEWID]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2604:
[exec] Warning: Singleton variables: [OPTVAR,ID]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2608:
[exec] Warning: Singleton variables: [OPTVAR,ID]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2624:
[exec] Warning: Singleton variables: [OPTVAR,ID,NEWID]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2644:
[exec] Warning: Singleton variables: [ID]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2647:
[exec] Warning: Singleton variables: [OPTVAR]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2653:
[exec] Warning: Singleton variables: [OPTVAR,ID,NEWID]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2701:
[exec] Warning: Singleton variables: [DATA]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2752:
[exec] Warning: Singleton variables: [MATCH]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2755:
[exec] Warning: Singleton variables: [MATCH]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2758:
[exec] Warning: Singleton variables: [MATCH]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2761:
[exec] Warning: Singleton variables: [MATCH,ALPHABET]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2766:
[exec] Warning: Singleton variables: [VAR,VARFOUND]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/logol.pl:2769:
[exec] Warning: Singleton variables: [VAR,VARFOUND]
[exec] % Disabled autoloading (loaded 42 files)
[exec] % Disabled autoloading (loaded 2 files)
[exec] % Disabled autoloading (loaded 0 files)
[exec] eval `swipl --dump-runtime-variables`
[exec] /usr/bin/cc -c -D_REENTRANT -D__SWI_PROLOG__ -D__SWI_EMBEDDED__ -I/usr/lib/swi-prolog/include -o preSwiMain.o preSwiMain.c
[exec] /usr/bin/cc -o preanalyse.exe -Wl,-rpath=/usr/lib/swi-prolog/lib/aarch64-linux preSwiMain.o -L/usr/lib/swi-prolog/lib/aarch64-linux -lswipl
[exec] swipl -f none -F none -g true -t "consult(['sicstus.pl','logol.pl']),qsave_program('pltmp-689631',[goal=true,toplevel=prolog,init_file='swi-logol.pl'])"
[exec] cat pltmp-689631 >> preanalyse.exe
[exec] chmod 755 preanalyse.exe
[exec] rm preSwiMain.o
[exec] rm pltmp-689631
[exec] % halt
clean:
antlr:
[java] /build/reproducible-path/logol-1.7.9+dfsg/src/logol.g
[java] ANTLR Parser Generator Version 3.5.3
compile:
[mkdir] Created dir: /build/reproducible-path/logol-1.7.9+dfsg/bin
[javac] /build/reproducible-path/logol-1.7.9+dfsg/build.xml:91: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
[javac] Compiling 62 source files to /build/reproducible-path/logol-1.7.9+dfsg/bin
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] /build/reproducible-path/logol-1.7.9+dfsg/src/org/irisa/genouest/logol/parser/logolParser.java:1393: warning: [removal] Boolean(boolean) in Boolean has been deprecated and marked for removal
[javac] LogolVariable.mainModels.put(token.getText(),new Boolean(true));
[javac] ^
[javac] /build/reproducible-path/logol-1.7.9+dfsg/src/org/irisa/genouest/logol/test/GrammarTest.java:1995: warning: unreachable catch clause
[javac] } catch (IOException e) {
[javac] ^
[javac] thrown type FileNotFoundException has already been caught
[javac] /build/reproducible-path/logol-1.7.9+dfsg/src/org/irisa/genouest/logol/utils/GrammarTools.java:215: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
[javac] return new Integer(expr);
[javac] ^
[javac] /build/reproducible-path/logol-1.7.9+dfsg/src/org/irisa/genouest/logol/utils/GrammarTools.java:221: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
[javac] return new Integer(expression[2]);
[javac] ^
[javac] /build/reproducible-path/logol-1.7.9+dfsg/src/org/irisa/genouest/logol/utils/GrammarTools.java:225: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal
[javac] return new Integer(expression[2])*(-1);
[javac] ^
[javac] /build/reproducible-path/logol-1.7.9+dfsg/src/org/irisa/genouest/logol/utils/GrammarTools.java:229: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] return new Integer(0);
[javac] ^
[javac] /build/reproducible-path/logol-1.7.9+dfsg/src/org/irisa/genouest/logol/utils/MyRevCompSequence.java:16: warning: [removal] Character(char) in Character has been deprecated and marked for removal
[javac] static final Character achar = new Character('a');
[javac] ^
[javac] /build/reproducible-path/logol-1.7.9+dfsg/src/org/irisa/genouest/logol/utils/MyRevCompSequence.java:17: warning: [removal] Character(char) in Character has been deprecated and marked for removal
[javac] static final Character cchar = new Character('c');
[javac] ^
[javac] /build/reproducible-path/logol-1.7.9+dfsg/src/org/irisa/genouest/logol/utils/MyRevCompSequence.java:18: warning: [removal] Character(char) in Character has been deprecated and marked for removal
[javac] static final Character gchar = new Character('g');
[javac] ^
[javac] /build/reproducible-path/logol-1.7.9+dfsg/src/org/irisa/genouest/logol/utils/MyRevCompSequence.java:19: warning: [removal] Character(char) in Character has been deprecated and marked for removal
[javac] static final Character tchar = new Character('t');
[javac] ^
[javac] /build/reproducible-path/logol-1.7.9+dfsg/src/org/irisa/genouest/logol/utils/MyRevCompSequence.java:20: warning: [removal] Character(char) in Character has been deprecated and marked for removal
[javac] static final Character uchar = new Character('u');
[javac] ^
[javac] Note: Some input files use or override a deprecated API.
[javac] Note: Recompile with -Xlint:deprecation for details.
[javac] Note: Some input files use unchecked or unsafe operations.
[javac] Note: Recompile with -Xlint:unchecked for details.
[javac] 12 warnings
create-jar:
[jar] Building jar: /build/reproducible-path/logol-1.7.9+dfsg/lib/LogolExec.jar
test_swi:
[mkdir] Created dir: /build/reproducible-path/logol-1.7.9+dfsg/test/tmp
[mkdir] Created dir: /build/reproducible-path/logol-1.7.9+dfsg/test/results
[exec]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/unitTest/swi-unit.pl:1:
[exec] Warning: Singleton variables: [UnitPath,Lib]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/unitTest/swi-unit.pl:1:
[exec] Warning: Goal (directive) failed: user:(prolog_flag(argv,[_7438,_7460,_7482,_7504,_7526,_7548,_7570,_7592,_7614,_7636]),ensure_loaded(_7548))
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/unitTest/swi-unit.pl:5:
[exec] Warning: Singleton variables: [SicPath,Lib]
[exec] Warning: /build/reproducible-path/logol-1.7.9+dfsg/prolog/unitTest/swi-unit.pl:5:
[exec] Warning: Goal (directive) failed: user:(prolog_flag(argv,[_9750,_9772,_9794,_9816,_9838,_9860,_9882,_9904,_9926,_9948]),ensure_loaded(_9838))
[exec] Welcome to SWI-Prolog (threaded, 64 bits, version 9.0.4)
[exec] SWI-Prolog comes with ABSOLUTELY NO WARRANTY. This is free software.
[exec] Please run ?- license. for legal details.
[exec]
[exec] For online help and background, visit https://www.swi-prolog.org
[exec] For built-in help, use ?- help(Topic). or ?- apropos(Word).
[exec]
[exec] % halt
[junit] Running org.irisa.genouest.logol.test.GrammarTest
[junit] Testsuite: org.irisa.genouest.logol.test.GrammarTest
[junit] Tests run: 78, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 21.876 sec
[junit] Tests run: 78, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 21.876 sec
[junit]
[junit] ------------- Standard Output ---------------
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/anyspacer.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/anyspacer.logol.b57a60c0-330c-4082-bdff-7767dc29d34b.1-41.xml: 10
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10
[junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible.
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/anyspacer.logol.b57a60c0-330c-4082-bdff-7767dc29d34b.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/anyspacer.logol.b57a60c0-330c-4082-bdff-7767dc29d34b.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/repeat_overlap.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat_overlap.logol.84c954eb-2f1a-43fb-a829-c7b9b4acf137.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat_overlap.logol.84c954eb-2f1a-43fb-a829-c7b9b4acf137.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat_overlap.logol.84c954eb-2f1a-43fb-a829-c7b9b4acf137.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/partialcomplement.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.Logol - option all called
[junit] INFO org.irisa.genouest.logol.Logol - option offset called with 1000
[junit] INFO org.irisa.genouest.logol.Logol - option start called with 5
[junit] INFO org.irisa.genouest.logol.Logol - option end called with 35
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/partialcomplement.logol.cb5bebc6-ab72-4a90-9962-4dd9193a8c7b.1005-1035.xml: 0
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/partialcomplement.logol.cb5bebc6-ab72-4a90-9962-4dd9193a8c7b.reverse.1005-1035.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/partialcomplement.logol.cb5bebc6-ab72-4a90-9962-4dd9193a8c7b.5-35-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/partialcomplement.logol.cb5bebc6-ab72-4a90-9962-4dd9193a8c7b.5-35-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/alphabet.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/alphabet.logol.7ae2ce36-2454-4e14-abbd-f382a7786d45.1-41.xml: 10
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10
[junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible.
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/alphabet.logol.7ae2ce36-2454-4e14-abbd-f382a7786d45.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/alphabet.logol.7ae2ce36-2454-4e14-abbd-f382a7786d45.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/optimal.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/optimal.logol.44027005-a0e6-4197-ae13-eab7a99e903f.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/optimal.logol.44027005-a0e6-4197-ae13-eab7a99e903f.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/optimal.logol.44027005-a0e6-4197-ae13-eab7a99e903f.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/repeat_startspacer.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat_startspacer.logol.482c0d03-ae06-4270-9b12-5d9020a230e1.1-41.xml: 10
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10
[junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible.
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat_startspacer.logol.482c0d03-ae06-4270-9b12-5d9020a230e1.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat_startspacer.logol.482c0d03-ae06-4270-9b12-5d9020a230e1.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/overlap.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/overlap.logol.6f1b93fc-db6d-403e-8e8f-b3ef261f8302.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/overlap.logol.6f1b93fc-db6d-403e-8e8f-b3ef261f8302.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/overlap.logol.6f1b93fc-db6d-403e-8e8f-b3ef261f8302.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/end.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/end.logol.45f0c30d-afcc-4014-9291-a6c79fab8d6b.1-41.xml: 10
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10
[junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible.
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/end.logol.45f0c30d-afcc-4014-9291-a6c79fab8d6b.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/end.logol.45f0c30d-afcc-4014-9291-a6c79fab8d6b.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/negcontent.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/negcontent.logol.22d6d408-e00c-4faa-9ab6-ab93089c61b3.1-41.xml: 2
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/negcontent.logol.22d6d408-e00c-4faa-9ab6-ab93089c61b3.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/negcontent.logol.22d6d408-e00c-4faa-9ab6-ab93089c61b3.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/begin.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/begin.logol.cb57e678-3601-44ac-8ced-139b4af5f414.1-41.xml: 10
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10
[junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible.
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/begin.logol.cb57e678-3601-44ac-8ced-139b4af5f414.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/begin.logol.cb57e678-3601-44ac-8ced-139b4af5f414.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/1799.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/1799.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/1799.logol.c2518494-56fc-4aaf-b9e4-984a2b3a2b05.1-4.xml: 3
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 3
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/1799.logol.c2518494-56fc-4aaf-b9e4-984a2b3a2b05.0-4-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/1799.logol.c2518494-56fc-4aaf-b9e4-984a2b3a2b05.0-4-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/1800.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/1800.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/1800.logol.bf49a9a5-f66f-41c7-8f5b-5ac9448b3e76.1-19.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/1800.logol.bf49a9a5-f66f-41c7-8f5b-5ac9448b3e76.0-19-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/1800.logol.bf49a9a5-f66f-41c7-8f5b-5ac9448b3e76.0-19-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/1806.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/1806.logol.92e302c9-8036-42b5-bc90-9564ab76325f.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/1806.logol.92e302c9-8036-42b5-bc90-9564ab76325f.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/1806.logol.92e302c9-8036-42b5-bc90-9564ab76325f.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/2244.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/2244.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/2244.logol.af6fdd39-dd4c-4a7e-8b20-fe3977c216a3.1-31.xml: 0
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 0
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/2244.logol.af6fdd39-dd4c-4a7e-8b20-fe3977c216a3.0-31-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/2244.logol.af6fdd39-dd4c-4a7e-8b20-fe3977c216a3.0-31-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/2235.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/2235.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/2235.logol.932bdcd6-384e-4cc5-9190-f97b5e1e7905.1-26.xml: 6
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 6
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/2235.logol.932bdcd6-384e-4cc5-9190-f97b5e1e7905.0-26-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/2235.logol.932bdcd6-384e-4cc5-9190-f97b5e1e7905.0-26-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/2242.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/2242.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/2242.logol.16612c05-a310-4edb-b097-a54a12a45401.1-29.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/2242.logol.16612c05-a310-4edb-b097-a54a12a45401.0-29-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/2242.logol.16612c05-a310-4edb-b097-a54a12a45401.0-29-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/2243.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/2243.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/2243.logol.3c9f1070-0b0e-4097-b464-c81fdbeab05b.1-15.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/2243.logol.3c9f1070-0b0e-4097-b464-c81fdbeab05b.0-15-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/2243.logol.3c9f1070-0b0e-4097-b464-c81fdbeab05b.0-15-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/fix2244.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/fix2244.logol.d3e2c52c-652b-495a-aacf-891af474fa5e.1-41.xml: 2
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/fix2244.logol.d3e2c52c-652b-495a-aacf-891af474fa5e.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/fix2244.logol.d3e2c52c-652b-495a-aacf-891af474fa5e.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/halt.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.Logol - option all called
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/halt.logol.08ff2832-cad9-42ff-9827-9345b17cbd1e.1-41.xml: 10
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10
[junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible.
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/halt.logol.08ff2832-cad9-42ff-9827-9345b17cbd1e.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/halt.logol.08ff2832-cad9-42ff-9827-9345b17cbd1e.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/negcontent2.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/negcontent2.logol.f5fa5c02-6a67-455a-be3d-fb96d23f4c7d.1-41.xml: 10
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10
[junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible.
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/negcontent2.logol.f5fa5c02-6a67-455a-be3d-fb96d23f4c7d.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/negcontent2.logol.f5fa5c02-6a67-455a-be3d-fb96d23f4c7d.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/negcontent3.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/negcontent3.logol.ca27a5b1-94f1-43d8-b910-d0b4bd6ab51c.1-41.xml: 10
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10
[junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible.
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/negcontent3.logol.ca27a5b1-94f1-43d8-b910-d0b4bd6ab51c.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/negcontent3.logol.ca27a5b1-94f1-43d8-b910-d0b4bd6ab51c.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/external.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/external.logol.b1824e9a-aa4d-4a23-8dae-766f9c9d384a.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/external.logol.b1824e9a-aa4d-4a23-8dae-766f9c9d384a.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/external.logol.b1824e9a-aa4d-4a23-8dae-766f9c9d384a.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/end_of_stream1.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/end_of_stream1.logol.e1478a23-e86f-454e-bd19-fcd1ad42bbe4.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/end_of_stream1.logol.e1478a23-e86f-454e-bd19-fcd1ad42bbe4.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/end_of_stream1.logol.e1478a23-e86f-454e-bd19-fcd1ad42bbe4.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/end_of_stream2.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/end_of_stream2.logol.d5621c02-535d-4571-8012-9d9b7b47aa27.1-41.xml: 0
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 0
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/end_of_stream2.logol.d5621c02-535d-4571-8012-9d9b7b47aa27.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/end_of_stream2.logol.d5621c02-535d-4571-8012-9d9b7b47aa27.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/metacontrol.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/metacontrol.logol.6a3ffa80-e6a1-4175-9b98-65ee40a38bd6.1-41.xml: 10
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10
[junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible.
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/metacontrol.logol.6a3ffa80-e6a1-4175-9b98-65ee40a38bd6.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/metacontrol.logol.6a3ffa80-e6a1-4175-9b98-65ee40a38bd6.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/view_begin.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/view_begin.logol.3a36705a-b5b1-47df-aa2e-8d813d7916ad.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/view_begin.logol.3a36705a-b5b1-47df-aa2e-8d813d7916ad.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/view_begin.logol.3a36705a-b5b1-47df-aa2e-8d813d7916ad.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/begin_postpone.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/begin_postpone.logol.31937056-77bf-4d36-b5e7-090d040dca2b.1-41.xml: 10
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10
[junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible.
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/begin_postpone.logol.31937056-77bf-4d36-b5e7-090d040dca2b.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/begin_postpone.logol.31937056-77bf-4d36-b5e7-090d040dca2b.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/complement.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.Logol - option all called
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/complement.logol.9bae547b-906d-41d4-b0d5-99446e30d4b5.1-41.xml: 0
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/complement.logol.9bae547b-906d-41d4-b0d5-99446e30d4b5.reverse.1-41.xml: 3
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 3
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/complement.logol.9bae547b-906d-41d4-b0d5-99446e30d4b5.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/complement.logol.9bae547b-906d-41d4-b0d5-99446e30d4b5.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/protein.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/protein.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.Logol - option protein called
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/protein.logol.2aae7a9c-b048-4405-8ff5-c1be70078db7.1-23.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/protein.logol.2aae7a9c-b048-4405-8ff5-c1be70078db7.0-23-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/protein.logol.2aae7a9c-b048-4405-8ff5-c1be70078db7.0-23-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/morphism_var.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/morphism_var.logol.98c95d29-402a-4b79-bc17-57c43f40d898.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/morphism_var.logol.98c95d29-402a-4b79-bc17-57c43f40d898.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/morphism_var.logol.98c95d29-402a-4b79-bc17-57c43f40d898.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/variable.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable.logol.1ff9efa8-54c7-470d-a459-ac6995faf1f2.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable.logol.1ff9efa8-54c7-470d-a459-ac6995faf1f2.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable.logol.1ff9efa8-54c7-470d-a459-ac6995faf1f2.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/cost_postpone.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/cost_postpone.logol.6f95ab19-a68b-4825-b08d-2fb139832041.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/cost_postpone.logol.6f95ab19-a68b-4825-b08d-2fb139832041.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/cost_postpone.logol.6f95ab19-a68b-4825-b08d-2fb139832041.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/call_model.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/call_model.logol.2c0083ec-dcb4-446b-ad5c-075a13997d78.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/call_model.logol.2c0083ec-dcb4-446b-ad5c-075a13997d78.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/call_model.logol.2c0083ec-dcb4-446b-ad5c-075a13997d78.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/variablewithdistance.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variablewithdistance.logol.4fd30c18-e7f4-49bc-a633-c4938f6a77be.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variablewithdistance.logol.4fd30c18-e7f4-49bc-a633-c4938f6a77be.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variablewithdistance.logol.4fd30c18-e7f4-49bc-a633-c4938f6a77be.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option m called with /build/reproducible-path/logol-1.7.9+dfsg/test/optimal.lgd
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar:
[junit] mod1(LOGOLVAR1)==>LOGOLVAR2%mydata%:{?"aaaa"},LOGOLVAR3%X1%:{#OPT[2,8]}
[junit] mod1(LOGOLVAR4)==*>SEQ1
[junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/optimal.lgd.33c2c159-3712-4257-8f48-4e1084beea83.logol
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/optimal.lgd.33c2c159-3712-4257-8f48-4e1084beea83.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/optimal.lgd.33c2c159-3712-4257-8f48-4e1084beea83.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/optimal.lgd.33c2c159-3712-4257-8f48-4e1084beea83.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/variablewitherror.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variablewitherror.logol.c2ffaedb-5f7e-40b9-81b7-b14f5b0e9684.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variablewitherror.logol.c2ffaedb-5f7e-40b9-81b7-b14f5b0e9684.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variablewitherror.logol.c2ffaedb-5f7e-40b9-81b7-b14f5b0e9684.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option m called with /build/reproducible-path/logol-1.7.9+dfsg/test/anyspacer.lgd
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar:
[junit] mod1(LOGOLVAR4)==>LOGOLVAR5%X1%:{@[0,20]},"ccc"
[junit] mod1(LOGOLVAR6)==*>SEQ1
[junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/anyspacer.lgd.b3c7fc94-0f46-463b-bf20-b49075f584ac.logol
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/anyspacer.lgd.b3c7fc94-0f46-463b-bf20-b49075f584ac.1-41.xml: 10
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10
[junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible.
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/anyspacer.lgd.b3c7fc94-0f46-463b-bf20-b49075f584ac.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/anyspacer.lgd.b3c7fc94-0f46-463b-bf20-b49075f584ac.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option m called with /build/reproducible-path/logol-1.7.9+dfsg/test/all.lgd
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.Logol - option all called
[junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar:
[junit] mod1(LOGOLVAR6)==>"ccc",.*,"ccc"
[junit] mod1(LOGOLVAR7)==*>SEQ1
[junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/all.lgd.fd6cf163-14e5-4874-ab4f-d7aeb225016d.logol
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/all.lgd.fd6cf163-14e5-4874-ab4f-d7aeb225016d.1-41.xml: 10
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10
[junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible.
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/all.lgd.fd6cf163-14e5-4874-ab4f-d7aeb225016d.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/all.lgd.fd6cf163-14e5-4874-ab4f-d7aeb225016d.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/repeat_any.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat_any.logol.e822e23d-8207-4a3a-aa31-73266a5c359d.1-41.xml: 3
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 3
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat_any.logol.e822e23d-8207-4a3a-aa31-73266a5c359d.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat_any.logol.e822e23d-8207-4a3a-aa31-73266a5c359d.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/comment2.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/comment2.logol.c79a9b1e-e300-40b1-be92-56522ab258f3.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/comment2.logol.c79a9b1e-e300-40b1-be92-56522ab258f3.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/comment2.logol.c79a9b1e-e300-40b1-be92-56522ab258f3.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option m called with /build/reproducible-path/logol-1.7.9+dfsg/test/negcontent.lgd
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar:
[junit] mod1(LOGOLVAR7)==>"aaaa",! "cgta":{#[3,5]}
[junit] mod1(LOGOLVAR8)==*>SEQ1
[junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/negcontent.lgd.09c7b979-432c-409c-a091-93db19e1cc66.logol
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/negcontent.lgd.09c7b979-432c-409c-a091-93db19e1cc66.1-41.xml: 2
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/negcontent.lgd.09c7b979-432c-409c-a091-93db19e1cc66.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/negcontent.lgd.09c7b979-432c-409c-a091-93db19e1cc66.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/parent_witherror.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/parent_witherror.logol.5e659285-473f-49a4-ae7e-3d0d294f9ffc.1-41.xml: 2
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/parent_witherror.logol.5e659285-473f-49a4-ae7e-3d0d294f9ffc.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/parent_witherror.logol.5e659285-473f-49a4-ae7e-3d0d294f9ffc.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/parent_exact.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/parent_exact.logol.dc2f8967-9c4e-4802-82fb-08d0f5181217.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/parent_exact.logol.dc2f8967-9c4e-4802-82fb-08d0f5181217.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/parent_exact.logol.dc2f8967-9c4e-4802-82fb-08d0f5181217.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/all.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.Logol - option all called
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/all.logol.c9c92669-4ba6-47cf-b711-3874ce23ba8a.1-41.xml: 10
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10
[junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible.
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/all.logol.c9c92669-4ba6-47cf-b711-3874ce23ba8a.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/all.logol.c9c92669-4ba6-47cf-b711-3874ce23ba8a.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/variable_unknown.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable_unknown.logol.03a5dd27-d399-4b69-ad1f-87c627ae52a0.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable_unknown.logol.03a5dd27-d399-4b69-ad1f-87c627ae52a0.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable_unknown.logol.03a5dd27-d399-4b69-ad1f-87c627ae52a0.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/morphism.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/morphism.logol.f8bd8733-be6f-4b09-ab22-ac44092cc85b.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/morphism.logol.f8bd8733-be6f-4b09-ab22-ac44092cc85b.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/morphism.logol.f8bd8733-be6f-4b09-ab22-ac44092cc85b.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/or_condition2.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/or_condition2.logol.ae7f78a4-1f2c-455b-aad0-db1220d076a1.1-41.xml: 4
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 4
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/or_condition2.logol.ae7f78a4-1f2c-455b-aad0-db1220d076a1.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/or_condition2.logol.ae7f78a4-1f2c-455b-aad0-db1220d076a1.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/comment.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/comment.logol.4315d57e-9a6b-4144-bdc0-1902469cdf42.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/comment.logol.4315d57e-9a6b-4144-bdc0-1902469cdf42.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/comment.logol.4315d57e-9a6b-4144-bdc0-1902469cdf42.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option m called with /build/reproducible-path/logol-1.7.9+dfsg/test/variable.lgd
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar:
[junit] mod1(LOGOLVAR8)==>"aaa","acgt":{_LOGOLVAR9%R1%},?LOGOLVAR9%R1%
[junit] mod1(LOGOLVAR10)==*>SEQ1
[junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/variable.lgd.f996f16c-22ce-4262-8aef-d201e201d2b9.logol
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable.lgd.f996f16c-22ce-4262-8aef-d201e201d2b9.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable.lgd.f996f16c-22ce-4262-8aef-d201e201d2b9.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable.lgd.f996f16c-22ce-4262-8aef-d201e201d2b9.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/call_model2.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/call_model2.logol.0f649182-f5ad-4714-96f5-9603ceec0d58.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/call_model2.logol.0f649182-f5ad-4714-96f5-9603ceec0d58.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/call_model2.logol.0f649182-f5ad-4714-96f5-9603ceec0d58.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/call_model3.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/call_model3.logol.77a5afe7-9411-44bf-90cc-9f6240551cba.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/call_model3.logol.77a5afe7-9411-44bf-90cc-9f6240551cba.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/call_model3.logol.77a5afe7-9411-44bf-90cc-9f6240551cba.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/call_model4.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/call_model4.logol.23c439f8-78f9-41e3-8984-332d96321cdc.1-41.xml: 2
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/call_model4.logol.23c439f8-78f9-41e3-8984-332d96321cdc.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/call_model4.logol.23c439f8-78f9-41e3-8984-332d96321cdc.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/repeat0.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat0.logol.bc11b2a2-0421-441b-8299-d58f3e2d3526.1-41.xml: 4
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 4
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat0.logol.bc11b2a2-0421-441b-8299-d58f3e2d3526.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat0.logol.bc11b2a2-0421-441b-8299-d58f3e2d3526.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/reverse.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/reverse.logol.3e9fc2a8-757b-40ee-a172-5ec6c5101e3a.1-41.xml: 4
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 4
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/reverse.logol.3e9fc2a8-757b-40ee-a172-5ec6c5101e3a.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/reverse.logol.3e9fc2a8-757b-40ee-a172-5ec6c5101e3a.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/variable_postcontent_witherror.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable_postcontent_witherror.logol.dbe7156b-a9ef-4eb7-af43-3565e51ac8c3.1-41.xml: 4
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 4
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable_postcontent_witherror.logol.dbe7156b-a9ef-4eb7-af43-3565e51ac8c3.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable_postcontent_witherror.logol.dbe7156b-a9ef-4eb7-af43-3565e51ac8c3.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/variablewitherroranddistance.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variablewitherroranddistance.logol.3dc9fed9-3c7e-4005-bdc8-d1abd575abac.1-41.xml: 2
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variablewitherroranddistance.logol.3dc9fed9-3c7e-4005-bdc8-d1abd575abac.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variablewitherroranddistance.logol.3dc9fed9-3c7e-4005-bdc8-d1abd575abac.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/complex.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/complex.logol.82ad7283-b92c-4685-b16d-cb5af937ca36.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/complex.logol.82ad7283-b92c-4685-b16d-cb5af937ca36.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/complex.logol.82ad7283-b92c-4685-b16d-cb5af937ca36.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/variablewithdistance2.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variablewithdistance2.logol.61b60eb0-b3b4-4558-817b-26d5e8487f54.1-41.xml: 0
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 0
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variablewithdistance2.logol.61b60eb0-b3b4-4558-817b-26d5e8487f54.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variablewithdistance2.logol.61b60eb0-b3b4-4558-817b-26d5e8487f54.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/variable_postcontent.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable_postcontent.logol.72bc9996-b91b-4d64-a2d4-b7d9de861c7f.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable_postcontent.logol.72bc9996-b91b-4d64-a2d4-b7d9de861c7f.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable_postcontent.logol.72bc9996-b91b-4d64-a2d4-b7d9de861c7f.0-41-all.xml
[junit] cgttttgggg
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/multiple_model.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/multiple_model.logol.715e82d4-379a-48b1-9a7d-8c26787ddd8a.1-41.xml: 3
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 3
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/multiple_model.logol.715e82d4-379a-48b1-9a7d-8c26787ddd8a.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/multiple_model.logol.715e82d4-379a-48b1-9a7d-8c26787ddd8a.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/variable.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable.logol.4f2430dc-2224-496f-a851-0a805a7630fc.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable.logol.4f2430dc-2224-496f-a851-0a805a7630fc.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable.logol.4f2430dc-2224-496f-a851-0a805a7630fc.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable.logol.4f2430dc-2224-496f-a851-0a805a7630fc.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option m called with /build/reproducible-path/logol-1.7.9+dfsg/test/begin.lgd
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar:
[junit] mod1(LOGOLVAR10)==>"aaaa",.*,LOGOLVAR11%X1%:{@[10,12],#[2,8]}
[junit] mod1(LOGOLVAR12)==*>SEQ1
[junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/begin.lgd.bdecc853-2410-4e44-a4e4-5c169faec0d2.logol
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/begin.lgd.bdecc853-2410-4e44-a4e4-5c169faec0d2.1-41.xml: 10
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10
[junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible.
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/begin.lgd.bdecc853-2410-4e44-a4e4-5c169faec0d2.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/begin.lgd.bdecc853-2410-4e44-a4e4-5c169faec0d2.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/ruby-cassiopee.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/ruby-cassiopee.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/variable.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.Logol - option all called
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable.logol.97c8dc59-9dee-49d7-adf4-dd4c6ffcf035.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable.logol.97c8dc59-9dee-49d7-adf4-dd4c6ffcf035.reverse.1-41.xml: 0
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable.logol.97c8dc59-9dee-49d7-adf4-dd4c6ffcf035.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable.logol.97c8dc59-9dee-49d7-adf4-dd4c6ffcf035.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/mycost.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/mycost.logol.80e63930-eb08-42a1-abf6-bb67d2ea7a03.1-41.xml: 2
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/mycost.logol.80e63930-eb08-42a1-abf6-bb67d2ea7a03.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/mycost.logol.80e63930-eb08-42a1-abf6-bb67d2ea7a03.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option m called with /build/reproducible-path/logol-1.7.9+dfsg/test/morphism.lgd
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar:
[junit] mod1(LOGOLVAR12)==>"aaa",+"wc" "tgca"
[junit] mod1(LOGOLVAR13)==*>SEQ1
[junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/morphism.lgd.7e68e709-6082-4359-8264-485dcca4b5a0.logol
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/morphism.lgd.7e68e709-6082-4359-8264-485dcca4b5a0.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/morphism.lgd.7e68e709-6082-4359-8264-485dcca4b5a0.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/morphism.lgd.7e68e709-6082-4359-8264-485dcca4b5a0.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/repeat.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat.logol.2b31be90-3b1f-4d53-84a6-6129508ba476.1-41.xml: 2
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat.logol.2b31be90-3b1f-4d53-84a6-6129508ba476.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat.logol.2b31be90-3b1f-4d53-84a6-6129508ba476.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/parent_witherror2.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/parent_witherror2.logol.3bf255a5-7be7-47a5-aaad-e98a716aa377.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/parent_witherror2.logol.3bf255a5-7be7-47a5-aaad-e98a716aa377.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/parent_witherror2.logol.3bf255a5-7be7-47a5-aaad-e98a716aa377.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/external2.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/external2.logol.42b0cf44-a6b3-4267-826a-55be37aeae0b.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/external2.logol.42b0cf44-a6b3-4267-826a-55be37aeae0b.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/external2.logol.42b0cf44-a6b3-4267-826a-55be37aeae0b.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/repeat_interspacer.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat_interspacer.logol.a6c2b289-a15b-486c-b018-cac0bab60c3c.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat_interspacer.logol.a6c2b289-a15b-486c-b018-cac0bab60c3c.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat_interspacer.logol.a6c2b289-a15b-486c-b018-cac0bab60c3c.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/notview.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/notview.logol.582a98fe-8f8c-4cb9-8c81-df56260c9d1b.1-41.xml: 2
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/notview.logol.582a98fe-8f8c-4cb9-8c81-df56260c9d1b.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/notview.logol.582a98fe-8f8c-4cb9-8c81-df56260c9d1b.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/repeat_anyspacer.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat_anyspacer.logol.a6194fa6-b94e-490e-be88-957963be6369.1-41.xml: 4
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 4
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat_anyspacer.logol.a6194fa6-b94e-490e-be88-957963be6369.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat_anyspacer.logol.a6194fa6-b94e-490e-be88-957963be6369.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/notrepeat.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/notrepeat.logol.aadf5dd9-3a45-4248-bbf1-0e756ebd5f98.1-41.xml: 1
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/notrepeat.logol.aadf5dd9-3a45-4248-bbf1-0e756ebd5f98.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/notrepeat.logol.aadf5dd9-3a45-4248-bbf1-0e756ebd5f98.0-41-all.xml
[junit] For help, use option -h
[junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/reproducible-path/logol-1.7.9+dfsg/test/logol.properties
[junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/reproducible-path/logol-1.7.9+dfsg/test/or_condition.logol
[junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/reproducible-path/logol-1.7.9+dfsg/test/test.fasta
[junit] INFO org.irisa.genouest.logol.Logol - option max called with 10
[junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence
[junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser
[junit] Executing prolog for pre-analyse
[junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress..
[junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user
[junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/or_condition.logol.cc583f84-81e0-4bd5-b1e4-1c9593b23c1d.1-41.xml: 3
[junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 3
[junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!!
[junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE:
[junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/or_condition.logol.cc583f84-81e0-4bd5-b1e4-1c9593b23c1d.0-41-all.xml
[junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/or_condition.logol.cc583f84-81e0-4bd5-b1e4-1c9593b23c1d.0-41-all.xml
[junit] ------------- ---------------- ---------------
[junit] ------------- Standard Error -----------------
[junit] log4j:ERROR setFile(null,true) call failed.
[junit] java.io.FileNotFoundException: /var/log/logol/logol.log (No such file or directory)
[junit] at java.base/java.io.FileOutputStream.open0(Native Method)
[junit] at java.base/java.io.FileOutputStream.open(FileOutputStream.java:293)
[junit] at java.base/java.io.FileOutputStream.<init>(FileOutputStream.java:235)
[junit] at java.base/java.io.FileOutputStream.<init>(FileOutputStream.java:155)
[junit] at org.apache.log4j.FileAppender.setFile(FileAppender.java:294)
[junit] at org.apache.log4j.FileAppender.activateOptions(FileAppender.java:165)
[junit] at org.apache.log4j.config.PropertySetter.activate(PropertySetter.java:307)
[junit] at org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:172)
[junit] at org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:104)
[junit] at org.apache.log4j.PropertyConfigurator.parseAppender(PropertyConfigurator.java:842)
[junit] at org.apache.log4j.PropertyConfigurator.parseCategory(PropertyConfigurator.java:768)
[junit] at org.apache.log4j.PropertyConfigurator.parseCatsAndRenderers(PropertyConfigurator.java:672)
[junit] at org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:516)
[junit] at org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:580)
[junit] at org.apache.log4j.helpers.OptionConverter.selectAndConfigure(OptionConverter.java:526)
[junit] at org.apache.log4j.LogManager.<clinit>(LogManager.java:127)
[junit] at org.apache.log4j.Logger.getLogger(Logger.java:117)
[junit] at org.irisa.genouest.logol.test.GrammarTest.<clinit>(Unknown Source)
[junit] at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
[junit] at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:77)
[junit] at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
[junit] at java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Constructor.java:499)
[junit] at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:480)
[junit] at org.junit.runners.BlockJUnit4ClassRunner.createTest(BlockJUnit4ClassRunner.java:250)
[junit] at org.junit.runners.BlockJUnit4ClassRunner.createTest(BlockJUnit4ClassRunner.java:260)
[junit] at org.junit.runners.BlockJUnit4ClassRunner$2.runReflectiveCall(BlockJUnit4ClassRunner.java:309)
[junit] at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
[junit] at org.junit.runners.BlockJUnit4ClassRunner.methodBlock(BlockJUnit4ClassRunner.java:311)
[junit] at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
[junit] at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
[junit] at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
[junit] at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
[junit] at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
[junit] at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79)
[junit] at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
[junit] at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
[junit] at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
[junit] at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
[junit] at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
[junit] at junit.framework.JUnit4TestAdapter.run(JUnit4TestAdapter.java:50)
[junit] at org.apache.tools.ant.taskdefs.optional.junit.JUnitTestRunner.run(JUnitTestRunner.java:535)
[junit] at org.apache.tools.ant.taskdefs.optional.junit.JUnitTestRunner.launch(JUnitTestRunner.java:1197)
[junit] at org.apache.tools.ant.taskdefs.optional.junit.JUnitTestRunner.main(JUnitTestRunner.java:1042)
[junit] line 4:0 missing NEWLINE at 'mod2'
[junit] line 4:0 missing NEWLINE at 'mod2'
[junit] line 4:0 missing NEWLINE at 'mod2'
[junit] ------------- ---------------- ---------------
[junit] Testcase: testAmbiguous(org.irisa.genouest.logol.test.GrammarTest):SKIPPED: got: <false>, expected: is <true>
[junit] Testcase: testVMatch2(org.irisa.genouest.logol.test.GrammarTest):SKIPPED: got: <false>, expected: is <true>
[junit] Testcase: testVMatch3(org.irisa.genouest.logol.test.GrammarTest):SKIPPED: got: <false>, expected: is <true>
[junit] Testcase: testVMatch(org.irisa.genouest.logol.test.GrammarTest):SKIPPED: got: <false>, expected: is <true>
BUILD SUCCESSFUL
Total time: 32 seconds
mkdir -p test/tmp test/results
ant -f build.xml doc
Buildfile: /build/reproducible-path/logol-1.7.9+dfsg/build.xml
[taskdef] Could not load definitions from resource tasks.properties. It could not be found.
doc:
[exec] This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex)
[exec] restricted \write18 enabled.
[exec] entering extended mode
[exec] (./logol.tex
[exec] LaTeX2e <2022-11-01> patch level 1
[exec] L3 programming layer <2023-01-16>
[exec] (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
[exec] Document Class: article 2022/07/02 v1.4n Standard LaTeX document class
[exec] (/usr/share/texlive/texmf-dist/tex/latex/base/size11.clo))
[exec] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
[exec] (/usr/share/texmf/tex/latex/swi-prolog/pldoc.sty
[exec] (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifpdf.sty
[exec] (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))
[exec] (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
[exec] (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
[exec] (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
[exec] (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)
[exec] (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
[exec] (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty))
[exec] (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
[exec] (/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty)
[exec] (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
[exec] (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty)
[exec] (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty)
[exec] (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty)
[exec] (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty)
[exec] (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
[exec] (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)
[exec] (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty
[exec] (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty)))
[exec] (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
[exec] (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
[exec] (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty)
[exec] (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def)
[exec] (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
[exec] (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty))
[exec] (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty))
[exec] (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
[exec] (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty)
[exec] (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
[exec] (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty)))
[exec] (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
[exec] (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
[exec] (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
[exec] (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
[exec] (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)))
[exec] (/usr/share/texlive/texmf-dist/tex/latex/a4wide/a4wide.sty
[exec] (/usr/share/texlive/texmf-dist/tex/latex/ntgclass/a4.sty))
[exec] (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
[exec] (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty
[exec] (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty))
[exec] (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
[exec] (/usr/share/texlive/texmf-dist/tex/latex/tools/dcolumn.sty)
[exec] (/usr/share/texlive/texmf-dist/tex/latex/tools/calc.sty)
[exec] (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty)
[exec] (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
[exec] (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
[exec] (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx))
[exec] ! Illegal parameter number in definition of \tags.
[exec] <to be read again>
[exec] 1
[exec] l.515 {\end{description}\end{quote}}
[exec]
[exec] ?
[exec] ! Emergency stop.
[exec] <to be read again>
[exec] 1
[exec] l.515 {\end{description}\end{quote}}
[exec]
[exec] ! ==> Fatal error occurred, no output PDF file produced!
[exec] Transcript written on logol.log.
[exec] mv: cannot stat 'logol.pdf': No such file or directory
[exec] Result: 1
BUILD SUCCESSFUL
Total time: 2 seconds
rm -f prolog/process.so
chrpath -d prolog/logol.exe
chrpath -d prolog/preanalyse.exe
make[1]: Leaving directory '/build/reproducible-path/logol-1.7.9+dfsg'
dh_auto_test
create-stamp debian/debhelper-build-stamp
dh_prep
dh_installdirs
dh_auto_install
debian/rules override_dh_install
make[1]: Entering directory '/build/reproducible-path/logol-1.7.9+dfsg'
dh_install
rm -f debian/logol/usr/share/logol/prolog/*.c
rm -f debian/logol/usr/share/logol/prolog/*.exe
rm -f debian/logol/usr/share/logol/prolog/logol.properties
rm -f debian/logol/usr/share/logol/tools/*.keep_old_script
if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/*.sh; fi
if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/tools/*.sh; fi
if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/tools/*.rb; fi
if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/tools/mycostfunction; fi
if [ ! -e debian/logol-bin/usr/share/logol/prolog ]; then mkdir -p debian/logol-bin/usr/share/logol/prolog; fi
ln -s /usr/lib/swi-prolog/lib/aarch64-linux/process.so debian/logol-bin/usr/share/logol/prolog/process.so
make[1]: Leaving directory '/build/reproducible-path/logol-1.7.9+dfsg'
dh_installdocs
dh_installchangelogs
debian/rules override_dh_installexamples
make[1]: Entering directory '/build/reproducible-path/logol-1.7.9+dfsg'
rm -f test/tmp/*
rm -f test/results/*
dh_installexamples
make[1]: Leaving directory '/build/reproducible-path/logol-1.7.9+dfsg'
dh_installman
dh_lintian
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_dwz
dwz: debian/logol-bin/usr/lib/logol/logol.exe: .debug_info section not present
dwz: debian/logol-bin/usr/lib/logol/preanalyse.exe: .debug_info section not present
dwz: Too few files for multifile optimization
dh_dwz: warning: No dwz multifile created, but not explicitly requested either so ignoring it.
dh_dwz: warning: Common issues include no debug information at all (missing -g) and
dh_dwz: warning: compressed debug information (#931891).
debian/rules override_dh_strip
make[1]: Entering directory '/build/reproducible-path/logol-1.7.9+dfsg'
dh_strip -Xlogol.exe -Xpreanalyse.exe
make[1]: Leaving directory '/build/reproducible-path/logol-1.7.9+dfsg'
dh_makeshlibs
dh_shlibdeps
dh_installdeb
dh_gencontrol
dpkg-gencontrol: warning: Depends field of package logol: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums
dh_builddeb
dpkg-deb: building package 'logol-bin' in '../logol-bin_1.7.9+dfsg-6_arm64.deb'.
dpkg-deb: building package 'logol' in '../logol_1.7.9+dfsg-6_all.deb'.
dpkg-genbuildinfo --build=binary -O../logol_1.7.9+dfsg-6_arm64.buildinfo
dpkg-genchanges --build=binary -O../logol_1.7.9+dfsg-6_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/645603/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/645603/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/645603 and its subdirectories
I: Current time: Mon Jan 8 11:39:44 +14 2024
I: pbuilder-time-stamp: 1704663584