I: pbuilder: network access will be disabled during build
I: Current time: Fri May  5 13:43:19 +14 2023
I: pbuilder-time-stamp: 1683243799
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
tar: ./bin: time stamp 2024-06-04 06:48:31 is 34189511.78032516 s in the future
tar: ./build: time stamp 2024-06-04 06:48:46 is 34189526.77896572 s in the future
tar: ./dev/null: time stamp 2024-06-04 06:48:05 is 34189485.77867914 s in the future
tar: ./dev/zero: time stamp 2024-06-04 06:48:05 is 34189485.77861324 s in the future
tar: ./dev/full: time stamp 2024-06-04 06:48:05 is 34189485.77856188 s in the future
tar: ./dev/random: time stamp 2024-06-04 06:48:05 is 34189485.77850968 s in the future
tar: ./dev/urandom: time stamp 2024-06-04 06:48:05 is 34189485.77845756 s in the future
tar: ./dev/tty: time stamp 2024-06-04 06:48:05 is 34189485.7784042 s in the future
tar: ./dev/console: time stamp 2024-06-04 06:48:05 is 34189485.77835468 s in the future
tar: ./dev/pts: time stamp 2024-06-04 06:48:05 is 34189485.77829632 s in the future
tar: ./dev/ptmx: time stamp 2024-06-04 06:48:05 is 34189485.77825108 s in the future
tar: ./etc/apt/sources.list: time stamp 2024-06-04 06:49:57 is 34189597.77779338 s in the future
tar: ./etc/apt/apt.conf.d/80proxy: time stamp 2024-06-04 06:49:56 is 34189596.77768698 s in the future
tar: ./etc/apt/apt.conf.d/15pbuilder: time stamp 2024-06-04 06:48:46 is 34189526.77751972 s in the future
tar: ./etc/apt/apt.conf.d: time stamp 2024-06-04 06:49:56 is 34189596.77747548 s in the future
tar: ./etc/apt/trusted.gpg.d: time stamp 2024-06-04 06:48:23 is 34189503.77552308 s in the future
tar: ./etc/apt: time stamp 2024-06-04 06:49:57 is 34189597.77545702 s in the future
tar: ./etc/cron.daily: time stamp 2024-06-04 06:49:07 is 34189547.77522032 s in the future
tar: ./etc/logrotate.d: time stamp 2024-06-04 06:49:07 is 34189547.77484328 s in the future
tar: ./etc/default: time stamp 2024-06-04 06:48:29 is 34189509.7744208 s in the future
tar: ./etc/dpkg/origins/default: time stamp 2024-06-04 06:48:06 is 34189486.77423928 s in the future
tar: ./etc/dpkg/origins: time stamp 2024-06-04 06:48:25 is 34189505.77419404 s in the future
tar: ./etc/dpkg/dpkg.cfg.d/02speedup: time stamp 2024-06-04 06:49:57 is 34189597.77403248 s in the future
tar: ./etc/dpkg/dpkg.cfg.d: time stamp 2024-06-04 06:49:57 is 34189597.77398394 s in the future
tar: ./etc/dpkg: time stamp 2024-06-04 06:48:45 is 34189525.76778568 s in the future
tar: ./etc/skel: time stamp 2024-06-04 06:48:25 is 34189505.76728908 s in the future
tar: ./etc/update-motd.d: time stamp 2024-06-04 06:48:25 is 34189505.76714776 s in the future
tar: ./etc/cron.d: time stamp 2024-06-04 06:48:25 is 34189505.76472374 s in the future
tar: ./etc/ld.so.conf.d: time stamp 2024-06-04 06:49:07 is 34189547.7641828 s in the future
tar: ./etc/selinux: time stamp 2024-06-04 06:48:24 is 34189504.76236432 s in the future
tar: ./etc/terminfo: time stamp 2024-06-04 06:48:25 is 34189505.76222362 s in the future
tar: ./etc/security/opasswd: time stamp 2024-06-04 06:48:29 is 34189509.76162406 s in the future
tar: ./etc/security: time stamp 2024-06-04 06:48:29 is 34189509.76157934 s in the future
tar: ./etc/pam.d/common-auth: time stamp 2024-06-04 06:48:30 is 34189510.76014782 s in the future
tar: ./etc/pam.d/common-account: time stamp 2024-06-04 06:48:30 is 34189510.7600302 s in the future
tar: ./etc/pam.d/common-password: time stamp 2024-06-04 06:48:30 is 34189510.75995142 s in the future
tar: ./etc/pam.d/common-session: time stamp 2024-06-04 06:48:30 is 34189510.75987162 s in the future
tar: ./etc/pam.d/common-session-noninteractive: time stamp 2024-06-04 06:48:30 is 34189510.75979952 s in the future
tar: ./etc/pam.d: time stamp 2024-06-04 06:48:30 is 34189510.75976132 s in the future
tar: ./etc/perl/Net: time stamp 2024-06-04 06:48:30 is 34189510.75963536 s in the future
tar: ./etc/init.d: time stamp 2024-06-04 06:48:25 is 34189505.7594135 s in the future
tar: ./etc/fstab: time stamp 2024-06-04 06:48:05 is 34189485.75934052 s in the future
tar: ./etc/opt: time stamp 2024-06-04 06:48:06 is 34189486.75919134 s in the future
tar: ./etc/timezone: time stamp 2024-06-04 06:48:24 is 34189504.75912974 s in the future
tar: ./etc/environment: time stamp 2024-06-04 06:48:29 is 34189509.75903258 s in the future
tar: ./etc/.pwd.lock: time stamp 2024-06-04 06:48:29 is 34189509.75898032 s in the future
tar: ./etc/shadow: time stamp 2024-06-04 06:48:29 is 34189509.75881468 s in the future
tar: ./etc/passwd-: time stamp 2024-06-04 06:48:05 is 34189485.75867142 s in the future
tar: ./etc/passwd: time stamp 2024-06-04 06:48:29 is 34189509.75859172 s in the future
tar: ./etc/gshadow: time stamp 2024-06-04 06:48:29 is 34189509.75846548 s in the future
tar: ./etc/group-: time stamp 2024-06-04 06:48:05 is 34189485.75835236 s in the future
tar: ./etc/group: time stamp 2024-06-04 06:48:29 is 34189509.7582874 s in the future
tar: ./etc/subuid: time stamp 2024-06-04 06:48:30 is 34189510.75823196 s in the future
tar: ./etc/subgid: time stamp 2024-06-04 06:48:30 is 34189510.75818064 s in the future
tar: ./etc/shells: time stamp 2024-06-04 06:48:31 is 34189511.75812222 s in the future
tar: ./etc/gss: time stamp 2024-06-04 06:48:43 is 34189523.7580299 s in the future
tar: ./etc/ld.so.cache: time stamp 2024-06-04 06:49:07 is 34189547.75665476 s in the future
tar: ./lib: time stamp 2024-06-04 06:48:31 is 34189511.75652092 s in the future
tar: ./media: time stamp 2024-06-04 06:48:06 is 34189486.75646656 s in the future
tar: ./mnt: time stamp 2024-06-04 06:48:06 is 34189486.75641952 s in the future
tar: ./opt: time stamp 2024-06-04 06:48:06 is 34189486.75637392 s in the future
tar: ./root: time stamp 2024-06-04 06:48:06 is 34189486.7561979 s in the future
tar: ./run/mount: time stamp 2024-06-04 06:48:05 is 34189485.75609168 s in the future
tar: ./run/lock: time stamp 2024-06-04 06:48:06 is 34189486.7560044 s in the future
tar: ./sbin: time stamp 2024-06-04 06:48:31 is 34189511.7559549 s in the future
tar: ./srv: time stamp 2024-06-04 06:48:06 is 34189486.75589732 s in the future
tar: ./usr/lib/aarch64-linux-gnu/e2fsprogs: time stamp 2024-06-04 06:48:13 is 34189493.75518428 s in the future
tar: ./usr/lib/aarch64-linux-gnu/gconv/gconv-modules.d: time stamp 2024-06-04 06:48:15 is 34189495.75398826 s in the future
tar: ./usr/lib/aarch64-linux-gnu/gconv: time stamp 2024-06-04 06:48:15 is 34189495.45495476 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/B: time stamp 2024-06-04 06:48:19 is 34189499.45334666 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/CORE: time stamp 2024-06-04 06:48:19 is 34189499.36066724 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Compress/Raw: time stamp 2024-06-04 06:48:19 is 34189499.35905112 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Data: time stamp 2024-06-04 06:48:19 is 34189499.35769882 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Devel: time stamp 2024-06-04 06:48:19 is 34189499.3486635 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Digest: time stamp 2024-06-04 06:48:19 is 34189499.34830648 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Encode/CN: time stamp 2024-06-04 06:48:19 is 34189499.34809438 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Encode/JP: time stamp 2024-06-04 06:48:19 is 34189499.3478505 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Encode/KR: time stamp 2024-06-04 06:48:19 is 34189499.34771684 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Encode/MIME/Header: time stamp 2024-06-04 06:48:19 is 34189499.34643876 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Encode/MIME: time stamp 2024-06-04 06:48:19 is 34189499.34620598 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Encode/Unicode: time stamp 2024-06-04 06:48:19 is 34189499.34605738 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Encode: time stamp 2024-06-04 06:48:19 is 34189499.3439867 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/File/Spec: time stamp 2024-06-04 06:48:19 is 34189499.34147092 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/File: time stamp 2024-06-04 06:48:19 is 34189499.34117604 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Filter/Util: time stamp 2024-06-04 06:48:19 is 34189499.34098376 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Hash/Util: time stamp 2024-06-04 06:48:19 is 34189499.33989016 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Hash: time stamp 2024-06-04 06:48:19 is 34189499.3396796 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/I18N: time stamp 2024-06-04 06:48:19 is 34189499.33951524 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/IO/Socket: time stamp 2024-06-04 06:48:19 is 34189499.33925604 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/IO: time stamp 2024-06-04 06:48:19 is 34189499.3385796 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/IPC: time stamp 2024-06-04 06:48:19 is 34189499.33820738 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/List/Util: time stamp 2024-06-04 06:48:19 is 34189499.33804392 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/List: time stamp 2024-06-04 06:48:19 is 34189499.3378951 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/MIME: time stamp 2024-06-04 06:48:19 is 34189499.33768618 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Math/BigInt: time stamp 2024-06-04 06:48:19 is 34189499.33750874 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/PerlIO: time stamp 2024-06-04 06:48:19 is 34189499.33717616 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Scalar: time stamp 2024-06-04 06:48:19 is 34189499.33701874 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Sub: time stamp 2024-06-04 06:48:19 is 34189499.33687292 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Sys: time stamp 2024-06-04 06:48:19 is 34189499.33656988 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Time: time stamp 2024-06-04 06:48:19 is 34189499.33471234 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Unicode/Collate: time stamp 2024-06-04 06:48:19 is 34189499.33440218 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/Unicode: time stamp 2024-06-04 06:48:19 is 34189499.33244138 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/asm: time stamp 2024-06-04 06:48:19 is 34189499.33164288 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/asm-generic: time stamp 2024-06-04 06:48:19 is 34189499.32960024 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/B: time stamp 2024-06-04 06:48:19 is 34189499.3277041 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Compress/Raw/Bzip2: time stamp 2024-06-04 06:48:19 is 34189499.3263177 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Compress/Raw/Zlib: time stamp 2024-06-04 06:48:19 is 34189499.32516102 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Cwd: time stamp 2024-06-04 06:48:19 is 34189499.32391586 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/DB_File: time stamp 2024-06-04 06:48:19 is 34189499.32246944 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Data/Dumper: time stamp 2024-06-04 06:48:19 is 34189499.32130542 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Devel/Peek: time stamp 2024-06-04 06:48:19 is 34189499.32009632 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Digest/MD5: time stamp 2024-06-04 06:48:19 is 34189499.31799374 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Digest/SHA: time stamp 2024-06-04 06:48:19 is 34189499.3177132 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Encode/Byte: time stamp 2024-06-04 06:48:19 is 34189499.31204316 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Encode/CN: time stamp 2024-06-04 06:48:19 is 34189499.28419302 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Encode/EBCDIC: time stamp 2024-06-04 06:48:19 is 34189499.28289744 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Encode/JP: time stamp 2024-06-04 06:48:19 is 34189499.24835224 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Encode/KR: time stamp 2024-06-04 06:48:19 is 34189499.21663546 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Encode/Symbol: time stamp 2024-06-04 06:48:19 is 34189499.21523786 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Encode/TW: time stamp 2024-06-04 06:48:19 is 34189499.18729322 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Encode/Unicode: time stamp 2024-06-04 06:48:19 is 34189499.18578508 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Encode: time stamp 2024-06-04 06:48:19 is 34189499.1848095 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Fcntl: time stamp 2024-06-04 06:48:19 is 34189499.18384676 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/File/DosGlob: time stamp 2024-06-04 06:48:19 is 34189499.18263018 s in the future
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tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Filter/Util/Call: time stamp 2024-06-04 06:48:19 is 34189499.18012834 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/GDBM_File: time stamp 2024-06-04 06:48:19 is 34189499.17879708 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Hash/Util/FieldHash: time stamp 2024-06-04 06:48:19 is 34189499.17764798 s in the future
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tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/I18N/Langinfo: time stamp 2024-06-04 06:48:19 is 34189499.17482166 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/IO: time stamp 2024-06-04 06:48:19 is 34189499.17451466 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/IPC/SysV: time stamp 2024-06-04 06:48:19 is 34189499.17246208 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/List/Util: time stamp 2024-06-04 06:48:19 is 34189499.17140778 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/MIME/Base64: time stamp 2024-06-04 06:48:19 is 34189499.170359 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Math/BigInt/FastCalc: time stamp 2024-06-04 06:48:19 is 34189499.16939502 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/NDBM_File: time stamp 2024-06-04 06:48:19 is 34189499.16837846 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/ODBM_File: time stamp 2024-06-04 06:48:19 is 34189499.1673711 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Opcode: time stamp 2024-06-04 06:48:19 is 34189499.16595866 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/POSIX: time stamp 2024-06-04 06:48:19 is 34189499.16395868 s in the future
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tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Socket: time stamp 2024-06-04 06:48:19 is 34189499.1567216 s in the future
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tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Sys/Hostname: time stamp 2024-06-04 06:48:19 is 34189499.15257484 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Sys/Syslog: time stamp 2024-06-04 06:48:19 is 34189499.15135322 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/auto/Time/HiRes: time stamp 2024-06-04 06:48:19 is 34189499.15014552 s in the future
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tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/bits/types: time stamp 2024-06-04 06:48:19 is 34189499.10235542 s in the future
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tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/linux: time stamp 2024-06-04 06:48:19 is 34189499.09519624 s in the future
tar: ./usr/lib/aarch64-linux-gnu/perl/5.36.0/sys: time stamp 2024-06-04 06:48:19 is 34189499.0929588 s in the future
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tar: ./etc/systemd/system/multi-user.target.wants: time stamp 2024-06-04 06:48:26 is 34189493.56558434 s in the future
tar: ./etc/systemd/system/timers.target.wants: time stamp 2024-06-04 06:48:29 is 34189496.56555502 s in the future
tar: ./etc/systemd/system: time stamp 2024-06-04 06:48:26 is 34189493.56552946 s in the future
tar: ./etc/rcS.d: time stamp 2024-06-04 06:48:25 is 34189492.5654922 s in the future
tar: ./etc/rc6.d: time stamp 2024-06-04 06:48:25 is 34189492.56546326 s in the future
tar: ./etc/rc0.d: time stamp 2024-06-04 06:48:25 is 34189492.56543324 s in the future
tar: ./etc/alternatives: time stamp 2024-06-04 06:49:07 is 34189534.56540356 s in the future
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [peptidebuilder_1.1.0-3.dsc]
I: copying [./peptidebuilder_1.1.0.orig.tar.gz]
I: copying [./peptidebuilder_1.1.0-3.debian.tar.xz]
I: Extracting source
gpgv: Signature made Sat Oct  9 10:54:03 2021 +14
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./peptidebuilder_1.1.0-3.dsc: no acceptable signature found
dpkg-source: info: extracting peptidebuilder in peptidebuilder-1.1.0
dpkg-source: info: unpacking peptidebuilder_1.1.0.orig.tar.gz
dpkg-source: info: unpacking peptidebuilder_1.1.0-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix-paths-with-os.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/28306/tmp/hooks/D01_modify_environment starting
debug: Running on codethink13-arm64.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 May  5 13:43 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/28306/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/28306/tmp/hooks/D02_print_environment starting
I: set
  BASH=/bin/sh
  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
  BASH_ALIASES=()
  BASH_ARGC=()
  BASH_ARGV=()
  BASH_CMDS=()
  BASH_LINENO=([0]="12" [1]="0")
  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
  BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu")
  BASH_VERSION='5.2.15(1)-release'
  BUILDDIR=/build
  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
  BUILDUSERNAME=pbuilder2
  BUILD_ARCH=arm64
  DEBIAN_FRONTEND=noninteractive
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8'
  DIRSTACK=()
  DISTRIBUTION=bookworm
  EUID=0
  FUNCNAME=([0]="Echo" [1]="main")
  GROUPS=()
  HOME=/var/lib/jenkins
  HOSTNAME=i-capture-the-hostname
  HOSTTYPE=aarch64
  HOST_ARCH=arm64
  IFS=' 	
  '
  LANG=C
  LANGUAGE=nl_BE:nl
  LC_ALL=C
  MACHTYPE=aarch64-unknown-linux-gnu
  MAIL=/var/mail/root
  OPTERR=1
  OPTIND=1
  OSTYPE=linux-gnu
  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
  PBCURRENTCOMMANDLINEOPERATION=build
  PBUILDER_OPERATION=build
  PBUILDER_PKGDATADIR=/usr/share/pbuilder
  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
  PBUILDER_SYSCONFDIR=/etc
  PIPESTATUS=([0]="0")
  POSIXLY_CORRECT=y
  PPID=28306
  PS4='+ '
  PWD=/
  SHELL=/bin/bash
  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
  SHLVL=3
  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5gugIUP8/pbuilderrc_FeZe --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5gugIUP8/b2 --logfile b2/build.log --extrapackages usrmerge peptidebuilder_1.1.0-3.dsc'
  SUDO_GID=117
  SUDO_UID=110
  SUDO_USER=jenkins
  TERM=unknown
  TZ=/usr/share/zoneinfo/Etc/GMT-14
  UID=0
  USER=root
  USERNAME=root
  _='I: set'
  http_proxy=http://192.168.101.16:3128
I: uname -a
  Linux i-capture-the-hostname 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Jun  4  2024 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/28306/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-python, python3-setuptools, python3-all, python3-biopython, python3-pytest, python3-pytest-cov
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19616 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on dh-python; however:
  Package dh-python is not installed.
 pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
  Package python3-setuptools is not installed.
 pbuilder-satisfydepends-dummy depends on python3-all; however:
  Package python3-all is not installed.
 pbuilder-satisfydepends-dummy depends on python3-biopython; however:
  Package python3-biopython is not installed.
 pbuilder-satisfydepends-dummy depends on python3-pytest; however:
  Package python3-pytest is not installed.
 pbuilder-satisfydepends-dummy depends on python3-pytest-cov; however:
  Package python3-pytest-cov is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1{a} libopenjp2-7{a} libpipeline1{a} libpng16-16{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libraqm0{a} libreadline8{a} libsub-override-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} po-debconf{a} python3{a} python3-all{a} python3-attr{a} python3-biopython{a} python3-coverage{a} python3-distutils{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pytest{a} python3-pytest-cov{a} python3-renderpm{a} python3-reportlab{a} python3-reportlab-accel{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} 
The following packages are RECOMMENDED but will NOT be installed:
  ca-certificates curl javascript-common libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile python3-pygments shared-mime-info wget xdg-user-dirs 
0 packages upgraded, 104 newly installed, 0 to remove and 0 not upgraded.
Need to get 53.8 MB of archives. After unpacking 197 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 2 http://deb.debian.org/debian bookworm/main arm64 libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2.1 [11.5 kB]
Get: 3 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-minimal arm64 3.11.2-6 [806 kB]
Get: 4 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB]
Get: 5 http://deb.debian.org/debian bookworm/main arm64 python3.11-minimal arm64 3.11.2-6 [1858 kB]
Get: 6 http://deb.debian.org/debian bookworm/main arm64 python3-minimal arm64 3.11.2-1+b1 [26.3 kB]
Get: 7 http://deb.debian.org/debian bookworm/main arm64 media-types all 10.0.0 [26.1 kB]
Get: 8 http://deb.debian.org/debian bookworm/main arm64 mailcap all 3.70+nmu1 [32.0 kB]
Get: 9 http://deb.debian.org/debian bookworm/main arm64 mime-support all 3.66 [10.9 kB]
Get: 10 http://deb.debian.org/debian bookworm/main arm64 readline-common all 8.2-1.3 [69.0 kB]
Get: 11 http://deb.debian.org/debian bookworm/main arm64 libreadline8 arm64 8.2-1.3 [155 kB]
Get: 12 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-stdlib arm64 3.11.2-6 [1747 kB]
Get: 13 http://deb.debian.org/debian bookworm/main arm64 python3.11 arm64 3.11.2-6 [572 kB]
Get: 14 http://deb.debian.org/debian bookworm/main arm64 libpython3-stdlib arm64 3.11.2-1+b1 [9296 B]
Get: 15 http://deb.debian.org/debian bookworm/main arm64 python3 arm64 3.11.2-1+b1 [26.3 kB]
Get: 16 http://deb.debian.org/debian bookworm/main arm64 sgml-base all 1.31 [15.4 kB]
Get: 17 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 18 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB]
Get: 19 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB]
Get: 20 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB]
Get: 21 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB]
Get: 22 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB]
Get: 23 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB]
Get: 24 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB]
Get: 25 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB]
Get: 26 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB]
Get: 27 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB]
Get: 28 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB]
Get: 29 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 30 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get: 31 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB]
Get: 32 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 33 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB]
Get: 34 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 35 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 36 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B]
Get: 37 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 38 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 39 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB]
Get: 40 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB]
Get: 41 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB]
Get: 42 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB]
Get: 43 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB]
Get: 44 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 45 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 46 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB]
Get: 47 http://deb.debian.org/debian bookworm/main arm64 python3-lib2to3 all 3.11.2-2 [76.2 kB]
Get: 48 http://deb.debian.org/debian bookworm/main arm64 python3-distutils all 3.11.2-2 [131 kB]
Get: 49 http://deb.debian.org/debian bookworm/main arm64 dh-python all 5.20230130 [104 kB]
Get: 50 http://deb.debian.org/debian bookworm/main arm64 libfontenc1 arm64 1:1.1.4-1 [23.6 kB]
Get: 51 http://deb.debian.org/debian bookworm/main arm64 libbrotli1 arm64 1.0.9-2+b6 [269 kB]
Get: 52 http://deb.debian.org/debian bookworm/main arm64 libpng16-16 arm64 1.6.39-2 [269 kB]
Get: 53 http://deb.debian.org/debian bookworm/main arm64 libfreetype6 arm64 2.12.1+dfsg-5 [369 kB]
Get: 54 http://deb.debian.org/debian bookworm/main arm64 x11-common all 1:7.7+23 [252 kB]
Get: 55 http://deb.debian.org/debian bookworm/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB]
Get: 56 http://deb.debian.org/debian bookworm/main arm64 xfonts-utils arm64 1:7.7+6 [85.6 kB]
Get: 57 http://deb.debian.org/debian bookworm/main arm64 fonts-urw-base35 all 20200910-7 [10.8 MB]
Get: 58 http://deb.debian.org/debian bookworm/main arm64 libblas3 arm64 3.11.0-2 [91.4 kB]
Get: 59 http://deb.debian.org/debian bookworm/main arm64 libbsd0 arm64 0.11.7-2 [115 kB]
Get: 60 http://deb.debian.org/debian bookworm/main arm64 libdeflate0 arm64 1.14-1 [54.3 kB]
Get: 61 http://deb.debian.org/debian bookworm/main arm64 libfribidi0 arm64 1.0.8-2.1 [64.9 kB]
Get: 62 http://deb.debian.org/debian bookworm/main arm64 libgfortran5 arm64 12.2.0-14 [340 kB]
Get: 63 http://deb.debian.org/debian bookworm/main arm64 libglib2.0-0 arm64 2.74.6-2 [1310 kB]
Get: 64 http://deb.debian.org/debian bookworm/main arm64 libgraphite2-3 arm64 1.3.14-1 [75.6 kB]
Get: 65 http://deb.debian.org/debian bookworm/main arm64 libharfbuzz0b arm64 6.0.0+dfsg-3 [1914 kB]
Get: 66 http://deb.debian.org/debian bookworm/main arm64 libimagequant0 arm64 2.17.0-1 [31.3 kB]
Get: 67 http://deb.debian.org/debian bookworm/main arm64 libjbig0 arm64 2.1-6.1 [30.0 kB]
Get: 68 http://deb.debian.org/debian bookworm/main arm64 libjpeg62-turbo arm64 1:2.1.5-2 [171 kB]
Get: 69 http://deb.debian.org/debian bookworm/main arm64 libjs-jquery-isonscreen all 1.2.0-1.1 [3196 B]
Get: 70 http://deb.debian.org/debian bookworm/main arm64 libjs-jquery-metadata all 12-4 [6532 B]
Get: 71 http://deb.debian.org/debian bookworm/main arm64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-3 [184 kB]
Get: 72 http://deb.debian.org/debian bookworm/main arm64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.2 kB]
Get: 73 http://deb.debian.org/debian bookworm/main arm64 liblapack3 arm64 3.11.0-2 [1664 kB]
Get: 74 http://deb.debian.org/debian bookworm/main arm64 liblcms2-2 arm64 2.14-2 [143 kB]
Get: 75 http://deb.debian.org/debian bookworm/main arm64 liblerc4 arm64 4.0.0+ds-2 [138 kB]
Get: 76 http://deb.debian.org/debian bookworm/main arm64 libopenjp2-7 arm64 2.5.0-1+b1 [176 kB]
Get: 77 http://deb.debian.org/debian bookworm/main arm64 libraqm0 arm64 0.7.0-4.1 [10.4 kB]
Get: 78 http://deb.debian.org/debian bookworm/main arm64 libwebp7 arm64 1.2.4-0.1 [259 kB]
Get: 79 http://deb.debian.org/debian bookworm/main arm64 libtiff6 arm64 4.5.0-5 [300 kB]
Get: 80 http://deb.debian.org/debian bookworm/main arm64 libwebpdemux2 arm64 1.2.4-0.1 [99.1 kB]
Get: 81 http://deb.debian.org/debian bookworm/main arm64 libwebpmux3 arm64 1.2.4-0.1 [109 kB]
Get: 82 http://deb.debian.org/debian bookworm/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB]
Get: 83 http://deb.debian.org/debian bookworm/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB]
Get: 84 http://deb.debian.org/debian bookworm/main arm64 libxcb1 arm64 1.15-1 [143 kB]
Get: 85 http://deb.debian.org/debian bookworm/main arm64 python3-all arm64 3.11.2-1+b1 [1064 B]
Get: 86 http://deb.debian.org/debian bookworm/main arm64 python3-attr all 22.2.0-1 [65.4 kB]
Get: 87 http://deb.debian.org/debian bookworm/main arm64 python3-pkg-resources all 66.1.1-1 [296 kB]
Get: 88 http://deb.debian.org/debian bookworm/main arm64 python3-numpy arm64 1:1.24.2-1 [4751 kB]
Get: 89 http://deb.debian.org/debian bookworm/main arm64 python3-renderpm arm64 3.6.12-1+b1 [73.5 kB]
Get: 90 http://deb.debian.org/debian bookworm/main arm64 python3-reportlab-accel arm64 3.6.12-1+b1 [38.4 kB]
Get: 91 http://deb.debian.org/debian bookworm/main arm64 python3-pil arm64 9.4.0-1.1+b1 [452 kB]
Get: 92 http://deb.debian.org/debian bookworm/main arm64 python3-reportlab all 3.6.12-1 [564 kB]
Get: 93 http://deb.debian.org/debian bookworm/main arm64 xml-core all 0.18+nmu1 [23.8 kB]
Get: 94 http://deb.debian.org/debian bookworm/main arm64 w3c-sgml-lib all 1.3-3 [273 kB]
Get: 95 http://deb.debian.org/debian bookworm/main arm64 python3-biopython arm64 1.80+dfsg-4+b1 [1580 kB]
Get: 96 http://deb.debian.org/debian bookworm/main arm64 python3-coverage arm64 6.5.0+dfsg1-2+b1 [153 kB]
Get: 97 http://deb.debian.org/debian bookworm/main arm64 python3-iniconfig all 1.1.1-2 [6396 B]
Get: 98 http://deb.debian.org/debian bookworm/main arm64 python3-more-itertools all 8.10.0-2 [53.0 kB]
Get: 99 http://deb.debian.org/debian bookworm/main arm64 python3-packaging all 23.0-1 [32.5 kB]
Get: 100 http://deb.debian.org/debian bookworm/main arm64 python3-pluggy all 1.0.0+repack-1 [19.7 kB]
Get: 101 http://deb.debian.org/debian bookworm/main arm64 python3-py all 1.11.0-1 [89.2 kB]
Get: 102 http://deb.debian.org/debian bookworm/main arm64 python3-pytest all 7.2.1-2 [236 kB]
Get: 103 http://deb.debian.org/debian bookworm/main arm64 python3-pytest-cov all 4.0.0-1 [26.1 kB]
Get: 104 http://deb.debian.org/debian bookworm/main arm64 python3-setuptools all 66.1.1-1 [521 kB]
Fetched 53.8 MB in 1s (46.3 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libjs-jquery.
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(Reading database ... 19616 files and directories currently installed.)
Preparing to unpack .../libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Selecting previously unselected package libjs-jquery-hotkeys.
Preparing to unpack .../libjs-jquery-hotkeys_0~20130707+git2d51e3a9+dfsg-2.1_all.deb ...
Unpacking libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ...
Selecting previously unselected package libpython3.11-minimal:arm64.
Preparing to unpack .../libpython3.11-minimal_3.11.2-6_arm64.deb ...
Unpacking libpython3.11-minimal:arm64 (3.11.2-6) ...
Selecting previously unselected package libexpat1:arm64.
Preparing to unpack .../libexpat1_2.5.0-1_arm64.deb ...
Unpacking libexpat1:arm64 (2.5.0-1) ...
Selecting previously unselected package python3.11-minimal.
Preparing to unpack .../python3.11-minimal_3.11.2-6_arm64.deb ...
Unpacking python3.11-minimal (3.11.2-6) ...
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Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up libxdmcp6:arm64 (1:1.1.2-3) ...
Setting up liblapack3:arm64 (3.11.0-2) ...
update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
Setting up libxcb1:arm64 (1.15-1) ...
Setting up gettext (0.21-12) ...
Setting up mime-support (3.66) ...
Setting up libtool (2.4.7-5) ...
Setting up libwebpdemux2:arm64 (1.2.4-0.1) ...
Setting up libreadline8:arm64 (8.2-1.3) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libfreetype6:arm64 (2.12.1+dfsg-5) ...
Setting up libjs-jquery-metadata (12-4) ...
Setting up libjs-jquery-isonscreen (1.2.0-1.1) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-3) ...
Setting up groff-base (1.22.4-10) ...
Setting up xml-core (0.18+nmu1) ...
Setting up libharfbuzz0b:arm64 (6.0.0+dfsg-3) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libpython3.11-stdlib:arm64 (3.11.2-6) ...
Setting up xfonts-utils (1:7.7+6) ...
Setting up man-db (2.11.2-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libraqm0:arm64 (0.7.0-4.1) ...
Setting up libpython3-stdlib:arm64 (3.11.2-1+b1) ...
Setting up python3.11 (3.11.2-6) ...
Setting up debhelper (13.11.4) ...
Setting up python3 (3.11.2-1+b1) ...
Setting up fonts-urw-base35 (20200910-7) ...
Setting up python3-pil:arm64 (9.4.0-1.1+b1) ...
Setting up python3-packaging (23.0-1) ...
Setting up python3-reportlab-accel:arm64 (3.6.12-1+b1) ...
Setting up python3-pluggy (1.0.0+repack-1) ...
Setting up python3-reportlab (3.6.12-1) ...
Setting up python3-lib2to3 (3.11.2-2) ...
Setting up python3-pkg-resources (66.1.1-1) ...
Setting up python3-distutils (3.11.2-2) ...
Setting up dh-python (5.20230130) ...
Setting up python3-more-itertools (8.10.0-2) ...
Setting up python3-iniconfig (1.1.1-2) ...
Setting up python3-attr (22.2.0-1) ...
Setting up python3-renderpm:arm64 (3.6.12-1+b1) ...
Setting up python3-setuptools (66.1.1-1) ...
Setting up python3-py (1.11.0-1) ...
Setting up python3-pytest (7.2.1-2) ...
Setting up python3-all (3.11.2-1+b1) ...
Setting up python3-coverage (6.5.0+dfsg1-2+b1) ...
Setting up python3-pytest-cov (4.0.0-1) ...
Setting up python3-numpy (1:1.24.2-1) ...
Processing triggers for libc-bin (2.36-9) ...
Processing triggers for sgml-base (1.31) ...
Setting up w3c-sgml-lib (1.3-3) ...
Setting up python3-biopython (1.80+dfsg-4+b1) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
usrmerge is already the newest version (35).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: user script /srv/workspace/pbuilder/28306/tmp/hooks/A99_set_merged_usr starting
Re-configuring usrmerge...
I: user script /srv/workspace/pbuilder/28306/tmp/hooks/A99_set_merged_usr finished
hostname: Temporary failure in name resolution
I: Running cd /build/peptidebuilder-1.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../peptidebuilder_1.1.0-3_source.changes
dpkg-buildpackage: info: source package peptidebuilder
dpkg-buildpackage: info: source version 1.1.0-3
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
dpkg-source: info: using options from peptidebuilder-1.1.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/
 debian/rules clean
dh clean --with python3 --buildsystem=pybuild
   dh_auto_clean -O--buildsystem=pybuild
	pybuild --clean -i python{version} -p 3.11
I: pybuild base:240: python3.11 setup.py clean 
running clean
removing '/build/peptidebuilder-1.1.0/.pybuild/cpython3_3.11_peptidebuilder/build' (and everything under it)
'build/bdist.linux-arm64' does not exist -- can't clean it
'build/scripts-3.11' does not exist -- can't clean it
	rm -rf .pybuild/
	find . -name \*.pyc -exec rm {} \;
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
	rm -f debian/debhelper-build-stamp
	rm -rf debian/.debhelper/
	rm -f -- debian/python3-peptidebuilder.substvars debian/files
	rm -fr -- debian/python3-peptidebuilder/ debian/tmp/
	find .  \( \( \
		\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
	        \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
		\) -exec rm -f {} + \) -o \
		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
 debian/rules binary
dh binary --with python3 --buildsystem=pybuild
   dh_update_autotools_config -O--buildsystem=pybuild
   dh_autoreconf -O--buildsystem=pybuild
   dh_auto_configure -O--buildsystem=pybuild
	pybuild --configure -i python{version} -p 3.11
I: pybuild base:240: python3.11 setup.py config 
running config
   dh_auto_build -O--buildsystem=pybuild
	pybuild --build -i python{version} -p 3.11
I: pybuild base:240: /usr/bin/python3 setup.py build 
running build
running build_py
creating /build/peptidebuilder-1.1.0/.pybuild/cpython3_3.11_peptidebuilder/build/PeptideBuilder
copying PeptideBuilder/__init__.py -> /build/peptidebuilder-1.1.0/.pybuild/cpython3_3.11_peptidebuilder/build/PeptideBuilder
copying PeptideBuilder/PeptideBuilder.py -> /build/peptidebuilder-1.1.0/.pybuild/cpython3_3.11_peptidebuilder/build/PeptideBuilder
copying PeptideBuilder/Geometry.py -> /build/peptidebuilder-1.1.0/.pybuild/cpython3_3.11_peptidebuilder/build/PeptideBuilder
   debian/rules override_dh_auto_test
make[1]: Entering directory '/build/peptidebuilder-1.1.0'
PYTHONPATH=$(pwd) pytest-3
============================= test session starts ==============================
platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack -- /usr/bin/python3
cachedir: .pytest_cache
rootdir: /build/peptidebuilder-1.1.0, configfile: pytest.ini, testpaths: tests
plugins: cov-4.0.0
collecting ... collected 28 items

tests/test_Geometry.py::test_geometry_A PASSED                           [  3%]
tests/test_Geometry.py::test_geometry_C PASSED                           [  7%]
tests/test_Geometry.py::test_geometry_D PASSED                           [ 10%]
tests/test_Geometry.py::test_geometry_E PASSED                           [ 14%]
tests/test_Geometry.py::test_geometry_F PASSED                           [ 17%]
tests/test_Geometry.py::test_geometry_G PASSED                           [ 21%]
tests/test_Geometry.py::test_geometry_H PASSED                           [ 25%]
tests/test_Geometry.py::test_geometry_I PASSED                           [ 28%]
tests/test_Geometry.py::test_geometry_K PASSED                           [ 32%]
tests/test_Geometry.py::test_geometry_L PASSED                           [ 35%]
tests/test_Geometry.py::test_geometry_M PASSED                           [ 39%]
tests/test_Geometry.py::test_geometry_N PASSED                           [ 42%]
tests/test_Geometry.py::test_geometry_P PASSED                           [ 46%]
tests/test_Geometry.py::test_geometry_Q PASSED                           [ 50%]
tests/test_Geometry.py::test_geometry_R PASSED                           [ 53%]
tests/test_Geometry.py::test_geometry_S PASSED                           [ 57%]
tests/test_Geometry.py::test_geometry_T PASSED                           [ 60%]
tests/test_Geometry.py::test_geometry_V PASSED                           [ 64%]
tests/test_Geometry.py::test_geometry_W PASSED                           [ 67%]
tests/test_Geometry.py::test_geometry_Y PASSED                           [ 71%]
tests/test_PeptideBuilder.py::test_add_residue PASSED                    [ 75%]
tests/test_PeptideBuilder.py::test_add_residue2 PASSED                   [ 78%]
tests/test_PeptideBuilder.py::test_make_structure_from_geos PASSED       [ 82%]
tests/test_PeptideBuilder.py::test_make_extended_structure PASSED        [ 85%]
tests/test_PeptideBuilder.py::test_make_structure_from_geos2 PASSED      [ 89%]
tests/test_PeptideBuilder.py::test_make_structure PASSED                 [ 92%]
tests/test_PeptideBuilder.py::test_make_structure2 PASSED                [ 96%]
tests/test_PeptideBuilder.py::test_add_terminal_OXT PASSED               [100%]

=============================== warnings summary ===============================
tests/test_PeptideBuilder.py: 10 warnings
  /usr/lib/python3/dist-packages/Bio/PDB/PDBParser.py:395: PDBConstructionWarning: Ignoring unrecognized record 'TER' at line 168
    warnings.warn(

tests/test_PeptideBuilder.py: 10 warnings
  /usr/lib/python3/dist-packages/Bio/PDB/PDBParser.py:395: PDBConstructionWarning: Ignoring unrecognized record 'END' at line 169
    warnings.warn(

tests/test_PeptideBuilder.py::test_add_terminal_OXT
  /usr/lib/python3/dist-packages/Bio/PDB/PDBParser.py:395: PDBConstructionWarning: Ignoring unrecognized record 'END' at line 170
    warnings.warn(

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html

---------- coverage: platform linux, python 3.11.2-final-0 -----------
Name                               Stmts   Miss  Cover
------------------------------------------------------
PeptideBuilder/Geometry.py           846    204    76%
PeptideBuilder/PeptideBuilder.py     869      3    99%
PeptideBuilder/__init__.py             3      0   100%
------------------------------------------------------
TOTAL                               1718    207    88%

======================= 28 passed, 21 warnings in 7.64s ========================
make[1]: Leaving directory '/build/peptidebuilder-1.1.0'
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--buildsystem=pybuild
   dh_prep -O--buildsystem=pybuild
	rm -f -- debian/python3-peptidebuilder.substvars
	rm -fr -- debian/.debhelper/generated/python3-peptidebuilder/ debian/python3-peptidebuilder/ debian/tmp/
   debian/rules override_dh_auto_install
make[1]: Entering directory '/build/peptidebuilder-1.1.0'
dh_auto_install
	install -m0755 -d /build/peptidebuilder-1.1.0/debian/python3-peptidebuilder
	pybuild --install -i python{version} -p 3.11 --dest-dir /build/peptidebuilder-1.1.0/debian/python3-peptidebuilder
I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/peptidebuilder-1.1.0/debian/python3-peptidebuilder 
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
  warnings.warn(
running build
running build_py
running install_lib
creating /build/peptidebuilder-1.1.0/debian/python3-peptidebuilder/usr
creating /build/peptidebuilder-1.1.0/debian/python3-peptidebuilder/usr/lib
creating /build/peptidebuilder-1.1.0/debian/python3-peptidebuilder/usr/lib/python3.11
creating /build/peptidebuilder-1.1.0/debian/python3-peptidebuilder/usr/lib/python3.11/dist-packages
creating /build/peptidebuilder-1.1.0/debian/python3-peptidebuilder/usr/lib/python3.11/dist-packages/PeptideBuilder
copying /build/peptidebuilder-1.1.0/.pybuild/cpython3_3.11_peptidebuilder/build/PeptideBuilder/Geometry.py -> /build/peptidebuilder-1.1.0/debian/python3-peptidebuilder/usr/lib/python3.11/dist-packages/PeptideBuilder
copying /build/peptidebuilder-1.1.0/.pybuild/cpython3_3.11_peptidebuilder/build/PeptideBuilder/PeptideBuilder.py -> /build/peptidebuilder-1.1.0/debian/python3-peptidebuilder/usr/lib/python3.11/dist-packages/PeptideBuilder
copying /build/peptidebuilder-1.1.0/.pybuild/cpython3_3.11_peptidebuilder/build/PeptideBuilder/__init__.py -> /build/peptidebuilder-1.1.0/debian/python3-peptidebuilder/usr/lib/python3.11/dist-packages/PeptideBuilder
byte-compiling /build/peptidebuilder-1.1.0/debian/python3-peptidebuilder/usr/lib/python3.11/dist-packages/PeptideBuilder/Geometry.py to Geometry.cpython-311.pyc
byte-compiling /build/peptidebuilder-1.1.0/debian/python3-peptidebuilder/usr/lib/python3.11/dist-packages/PeptideBuilder/PeptideBuilder.py to PeptideBuilder.cpython-311.pyc
byte-compiling /build/peptidebuilder-1.1.0/debian/python3-peptidebuilder/usr/lib/python3.11/dist-packages/PeptideBuilder/__init__.py to __init__.cpython-311.pyc
running install_egg_info
running egg_info
creating PeptideBuilder.egg-info
writing PeptideBuilder.egg-info/PKG-INFO
writing dependency_links to PeptideBuilder.egg-info/dependency_links.txt
writing requirements to PeptideBuilder.egg-info/requires.txt
writing top-level names to PeptideBuilder.egg-info/top_level.txt
writing manifest file 'PeptideBuilder.egg-info/SOURCES.txt'
reading manifest file 'PeptideBuilder.egg-info/SOURCES.txt'
adding license file 'LICENSE'
writing manifest file 'PeptideBuilder.egg-info/SOURCES.txt'
Copying PeptideBuilder.egg-info to /build/peptidebuilder-1.1.0/debian/python3-peptidebuilder/usr/lib/python3.11/dist-packages/PeptideBuilder-1.1.0.egg-info
Skipping SOURCES.txt
running install_scripts
find debian/python3-peptidebuilder/usr/lib/ -name .coverage -delete
make[1]: Leaving directory '/build/peptidebuilder-1.1.0'
   dh_installdocs -O--buildsystem=pybuild
	install -m0755 -d debian/python3-peptidebuilder/usr/share/doc/python3-peptidebuilder
	install -p -m0644 debian/copyright debian/python3-peptidebuilder/usr/share/doc/python3-peptidebuilder/copyright
   dh_installchangelogs -O--buildsystem=pybuild
	install -m0755 -d debian/python3-peptidebuilder/usr/share/doc/python3-peptidebuilder
	install -p -m0644 debian/.debhelper/generated/python3-peptidebuilder/dh_installchangelogs.dch.trimmed debian/python3-peptidebuilder/usr/share/doc/python3-peptidebuilder/changelog.Debian
   dh_python3 -O--buildsystem=pybuild
D: dh_python3 dh_python3:179: version: 5.20230130
D: dh_python3 dh_python3:180: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild']
D: dh_python3 dh_python3:181: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild'])
D: dh_python3 dh_python3:182: supported Python versions: 3.11 (default=3.11)
D: dh_python3 debhelper:183: source=peptidebuilder, binary packages=['python3-peptidebuilder']
D: dh_python3 dh_python3:204: processing package python3-peptidebuilder...
D: dh_python3 fs:52: moving files from debian/python3-peptidebuilder/usr/lib/python3.11/dist-packages to debian/python3-peptidebuilder/usr/lib/python3/dist-packages/
D: dh_python3 fs:400: package python3-peptidebuilder details = {'requires.txt': {'debian/python3-peptidebuilder/usr/lib/python3/dist-packages/PeptideBuilder-1.1.0.egg-info/requires.txt'}, 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()}
D: dh_python3 depends:117: generating dependencies for package python3-peptidebuilder
D: dh_python3 pydist:173: trying to find dependency for Biopython (python=None)
D: dh_python3 pydist:207: dependency: module seems to be installed
D: dh_python3 pydist:270: dependency: included in build-deps
D: dh_python3 depends:281: D={'python3:any', 'python3-biopython'}; R=[]; S=[]; E=[], B=[]; RT=[]
   dh_installsystemduser -O--buildsystem=pybuild
   dh_perl -O--buildsystem=pybuild
   dh_link -O--buildsystem=pybuild
   dh_strip_nondeterminism -O--buildsystem=pybuild
   dh_compress -O--buildsystem=pybuild
	cd debian/python3-peptidebuilder
	chmod a-x usr/share/doc/python3-peptidebuilder/changelog.Debian
	gzip -9nf usr/share/doc/python3-peptidebuilder/changelog.Debian
	cd '/build/peptidebuilder-1.1.0'
   dh_fixperms -O--buildsystem=pybuild
	find debian/python3-peptidebuilder ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
	find debian/python3-peptidebuilder/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-peptidebuilder/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/python3-peptidebuilder/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
	find debian/python3-peptidebuilder -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/python3-peptidebuilder/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
   dh_missing -O--buildsystem=pybuild
   dh_installdeb -O--buildsystem=pybuild
	install -m0755 -d debian/python3-peptidebuilder/DEBIAN
	printf '#!/bin/sh\nset -e\n' > debian/python3-peptidebuilder/DEBIAN/postinst
	cat debian/python3-peptidebuilder.postinst.debhelper >> debian/python3-peptidebuilder/DEBIAN/postinst
	chmod 0755 -- debian/python3-peptidebuilder/DEBIAN/postinst
	printf '#!/bin/sh\nset -e\n' > debian/python3-peptidebuilder/DEBIAN/prerm
	cat debian/python3-peptidebuilder.prerm.debhelper >> debian/python3-peptidebuilder/DEBIAN/prerm
	chmod 0755 -- debian/python3-peptidebuilder/DEBIAN/prerm
   dh_gencontrol -O--buildsystem=pybuild
	install -m0755 -d debian/python3-peptidebuilder/DEBIAN
	echo misc:Depends= >> debian/python3-peptidebuilder.substvars
	echo misc:Pre-Depends= >> debian/python3-peptidebuilder.substvars
	dpkg-gencontrol -ppython3-peptidebuilder -ldebian/changelog -Tdebian/python3-peptidebuilder.substvars -Pdebian/python3-peptidebuilder
	chmod 0644 -- debian/python3-peptidebuilder/DEBIAN/control
   dh_md5sums -O--buildsystem=pybuild
	install -m0755 -d debian/python3-peptidebuilder/DEBIAN
	cd debian/python3-peptidebuilder >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
	chmod 0644 -- debian/python3-peptidebuilder/DEBIAN/md5sums
   dh_builddeb -O--buildsystem=pybuild
	dpkg-deb --root-owner-group --build debian/python3-peptidebuilder ..
dpkg-deb: building package 'python3-peptidebuilder' in '../python3-peptidebuilder_1.1.0-3_all.deb'.
 dpkg-genbuildinfo --build=binary -O../peptidebuilder_1.1.0-3_arm64.buildinfo
 dpkg-genchanges --build=binary -O../peptidebuilder_1.1.0-3_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-source: info: using options from peptidebuilder-1.1.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/28306/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/28306/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/28306 and its subdirectories
I: Current time: Fri May  5 13:47:08 +14 2023
I: pbuilder-time-stamp: 1683244028