I: pbuilder: network access will be disabled during build
I: Current time: Thu Jun 20 23:37:00 +14 2024
I: pbuilder-time-stamp: 1718876220
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [profnet_1.0.22-8.dsc]
I: copying [./profnet_1.0.22.orig.tar.gz]
I: copying [./profnet_1.0.22-8.debian.tar.xz]
I: Extracting source
gpgv: Signature made Thu Jan 20 10:09:19 2022 +14
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./profnet_1.0.22-8.dsc: no acceptable signature found
dpkg-source: info: extracting profnet in profnet-1.0.22
dpkg-source: info: unpacking profnet_1.0.22.orig.tar.gz
dpkg-source: info: unpacking profnet_1.0.22-8.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying spelling
dpkg-source: info: applying skip_some_flags_for_fortran.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/25419/tmp/hooks/D01_modify_environment starting
debug: Running on codethink11-arm64.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 Jun 20 23:37 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/25419/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/25419/tmp/hooks/D02_print_environment starting
I: set
BASH=/bin/sh
BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
BASH_ALIASES=()
BASH_ARGC=()
BASH_ARGV=()
BASH_CMDS=()
BASH_LINENO=([0]="12" [1]="0")
BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu")
BASH_VERSION='5.2.15(1)-release'
BUILDDIR=/build
BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
BUILDUSERNAME=pbuilder2
BUILD_ARCH=arm64
DEBIAN_FRONTEND=noninteractive
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8 '
DIRSTACK=()
DISTRIBUTION=bookworm
EUID=0
FUNCNAME=([0]="Echo" [1]="main")
GROUPS=()
HOME=/var/lib/jenkins
HOSTNAME=i-capture-the-hostname
HOSTTYPE=aarch64
HOST_ARCH=arm64
IFS='
'
LANG=C
LANGUAGE=nl_BE:nl
LC_ALL=C
MACHTYPE=aarch64-unknown-linux-gnu
MAIL=/var/mail/root
OPTERR=1
OPTIND=1
OSTYPE=linux-gnu
PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
PBCURRENTCOMMANDLINEOPERATION=build
PBUILDER_OPERATION=build
PBUILDER_PKGDATADIR=/usr/share/pbuilder
PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
PBUILDER_SYSCONFDIR=/etc
PIPESTATUS=([0]="0")
POSIXLY_CORRECT=y
PPID=25419
PS4='+ '
PWD=/
SHELL=/bin/bash
SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
SHLVL=3
SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ll3Ds4FE/pbuilderrc_rgAD --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ll3Ds4FE/b2 --logfile b2/build.log --extrapackages usrmerge profnet_1.0.22-8.dsc'
SUDO_GID=117
SUDO_UID=110
SUDO_USER=jenkins
TERM=unknown
TZ=/usr/share/zoneinfo/Etc/GMT-14
UID=0
USER=root
USERNAME=root
_='I: set'
http_proxy=http://192.168.101.16:3128
I: uname -a
Linux i-capture-the-hostname 4.15.0-211-generic #222-Ubuntu SMP Tue Apr 18 18:58:27 UTC 2023 aarch64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Jun 18 06:47 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/25419/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), gfortran, rsync, debhelper
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19616 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on gfortran; however:
Package gfortran is not installed.
pbuilder-satisfydepends-dummy depends on rsync; however:
Package rsync is not installed.
pbuilder-satisfydepends-dummy depends on debhelper; however:
Package debhelper is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran{a} gfortran-12{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libgfortran-12-dev{a} libgfortran5{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libpopt0{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} rsync{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget
0 packages upgraded, 36 newly installed, 0 to remove and 0 not upgraded.
Need to get 28.2 MB of archives. After unpacking 111 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main arm64 libpopt0 arm64 1.19+dfsg-1 [42.0 kB]
Get: 2 http://deb.debian.org/debian bookworm/main arm64 rsync arm64 3.2.7-1 [399 kB]
Get: 3 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 4 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB]
Get: 5 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB]
Get: 6 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB]
Get: 7 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB]
Get: 8 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB]
Get: 9 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB]
Get: 10 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB]
Get: 11 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB]
Get: 12 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB]
Get: 13 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB]
Get: 14 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB]
Get: 15 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 16 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get: 17 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB]
Get: 18 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 19 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB]
Get: 20 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 21 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 22 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B]
Get: 23 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 24 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 25 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB]
Get: 26 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB]
Get: 27 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB]
Get: 28 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB]
Get: 29 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB]
Get: 30 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 31 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 32 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB]
Get: 33 http://deb.debian.org/debian bookworm/main arm64 libgfortran5 arm64 12.2.0-14 [340 kB]
Get: 34 http://deb.debian.org/debian bookworm/main arm64 libgfortran-12-dev arm64 12.2.0-14 [396 kB]
Get: 35 http://deb.debian.org/debian bookworm/main arm64 gfortran-12 arm64 12.2.0-14 [8646 kB]
Get: 36 http://deb.debian.org/debian bookworm/main arm64 gfortran arm64 4:12.2.0-3 [1420 B]
Fetched 28.2 MB in 1s (52.6 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libpopt0:arm64.
(Reading database ...
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19616 files and directories currently installed.)
Preparing to unpack .../00-libpopt0_1.19+dfsg-1_arm64.deb ...
Unpacking libpopt0:arm64 (1.19+dfsg-1) ...
Selecting previously unselected package rsync.
Preparing to unpack .../01-rsync_3.2.7-1_arm64.deb ...
Unpacking rsync (3.2.7-1) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../02-sensible-utils_0.0.17+nmu1_all.deb ...
Unpacking sensible-utils (0.0.17+nmu1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../03-libmagic-mgc_1%3a5.44-3_arm64.deb ...
Unpacking libmagic-mgc (1:5.44-3) ...
Selecting previously unselected package libmagic1:arm64.
Preparing to unpack .../04-libmagic1_1%3a5.44-3_arm64.deb ...
Unpacking libmagic1:arm64 (1:5.44-3) ...
Selecting previously unselected package file.
Preparing to unpack .../05-file_1%3a5.44-3_arm64.deb ...
Unpacking file (1:5.44-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../06-gettext-base_0.21-12_arm64.deb ...
Unpacking gettext-base (0.21-12) ...
Selecting previously unselected package libuchardet0:arm64.
Preparing to unpack .../07-libuchardet0_0.0.7-1_arm64.deb ...
Unpacking libuchardet0:arm64 (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../08-groff-base_1.22.4-10_arm64.deb ...
Unpacking groff-base (1.22.4-10) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../09-bsdextrautils_2.38.1-5+b1_arm64.deb ...
Unpacking bsdextrautils (2.38.1-5+b1) ...
Selecting previously unselected package libpipeline1:arm64.
Preparing to unpack .../10-libpipeline1_1.5.7-1_arm64.deb ...
Unpacking libpipeline1:arm64 (1.5.7-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../11-man-db_2.11.2-2_arm64.deb ...
Unpacking man-db (2.11.2-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../12-m4_1.4.19-3_arm64.deb ...
Unpacking m4 (1.4.19-3) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../13-autoconf_2.71-3_all.deb ...
Unpacking autoconf (2.71-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../16-autopoint_0.21-12_all.deb ...
Unpacking autopoint (0.21-12) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../17-libdebhelper-perl_13.11.4_all.deb ...
Unpacking libdebhelper-perl (13.11.4) ...
Selecting previously unselected package libtool.
Preparing to unpack .../18-libtool_2.4.7-5_all.deb ...
Unpacking libtool (2.4.7-5) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../19-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../21-libsub-override-perl_0.09-4_all.deb ...
Unpacking libsub-override-perl (0.09-4) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../22-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../23-dh-strip-nondeterminism_1.13.1-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.13.1-1) ...
Selecting previously unselected package libelf1:arm64.
Preparing to unpack .../24-libelf1_0.188-2.1_arm64.deb ...
Unpacking libelf1:arm64 (0.188-2.1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../25-dwz_0.15-1_arm64.deb ...
Unpacking dwz (0.15-1) ...
Selecting previously unselected package libicu72:arm64.
Preparing to unpack .../26-libicu72_72.1-3_arm64.deb ...
Unpacking libicu72:arm64 (72.1-3) ...
Selecting previously unselected package libxml2:arm64.
Preparing to unpack .../27-libxml2_2.9.14+dfsg-1.2_arm64.deb ...
Unpacking libxml2:arm64 (2.9.14+dfsg-1.2) ...
Selecting previously unselected package gettext.
Preparing to unpack .../28-gettext_0.21-12_arm64.deb ...
Unpacking gettext (0.21-12) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../29-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../30-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../31-debhelper_13.11.4_all.deb ...
Unpacking debhelper (13.11.4) ...
Selecting previously unselected package libgfortran5:arm64.
Preparing to unpack .../32-libgfortran5_12.2.0-14_arm64.deb ...
Unpacking libgfortran5:arm64 (12.2.0-14) ...
Selecting previously unselected package libgfortran-12-dev:arm64.
Preparing to unpack .../33-libgfortran-12-dev_12.2.0-14_arm64.deb ...
Unpacking libgfortran-12-dev:arm64 (12.2.0-14) ...
Selecting previously unselected package gfortran-12.
Preparing to unpack .../34-gfortran-12_12.2.0-14_arm64.deb ...
Unpacking gfortran-12 (12.2.0-14) ...
Selecting previously unselected package gfortran.
Preparing to unpack .../35-gfortran_4%3a12.2.0-3_arm64.deb ...
Unpacking gfortran (4:12.2.0-3) ...
Setting up libpipeline1:arm64 (1.5.7-1) ...
Setting up libicu72:arm64 (72.1-3) ...
Setting up bsdextrautils (2.38.1-5+b1) ...
Setting up libmagic-mgc (1:5.44-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.11.4) ...
Setting up libmagic1:arm64 (1:5.44-3) ...
Setting up gettext-base (0.21-12) ...
Setting up m4 (1.4.19-3) ...
Setting up file (1:5.44-3) ...
Setting up autotools-dev (20220109.1) ...
Setting up autopoint (0.21-12) ...
Setting up libgfortran5:arm64 (12.2.0-14) ...
Setting up autoconf (2.71-3) ...
Setting up sensible-utils (0.0.17+nmu1) ...
Setting up libuchardet0:arm64 (0.0.7-1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libelf1:arm64 (0.188-2.1) ...
Setting up libxml2:arm64 (2.9.14+dfsg-1.2) ...
Setting up libpopt0:arm64 (1.19+dfsg-1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up gettext (0.21-12) ...
Setting up libtool (2.4.7-5) ...
Setting up libgfortran-12-dev:arm64 (12.2.0-14) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up gfortran-12 (12.2.0-14) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.22.4-10) ...
Setting up rsync (3.2.7-1) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of start.
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.11.2-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:12.2.0-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up debhelper (13.11.4) ...
Processing triggers for libc-bin (2.36-9) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
usrmerge is already the newest version (35).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: user script /srv/workspace/pbuilder/25419/tmp/hooks/A99_set_merged_usr starting
Re-configuring usrmerge...
I: user script /srv/workspace/pbuilder/25419/tmp/hooks/A99_set_merged_usr finished
hostname: Temporary failure in name resolution
I: Running cd /build/profnet-1.0.22/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../profnet_1.0.22-8_source.changes
dpkg-buildpackage: info: source package profnet
dpkg-buildpackage: info: source version 1.0.22-8
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean
dh_auto_clean
make -j8 distclean
make[1]: Entering directory '/build/profnet-1.0.22'
make -C src clean
rm -rf bval_dir
rm -rf chop_dir
rm -rf con_dir
rm -rf isis_dir
make[2]: Entering directory '/build/profnet-1.0.22/src'
rm -f *.o profnet_prof
rm -rf md_dir
rm -rf norsnet_dir
rm -rf prof_dir
rm -rf snapfun_dir
make[2]: Leaving directory '/build/profnet-1.0.22/src'
make -C src-phd clean
make[2]: Entering directory '/build/profnet-1.0.22/src-phd'
rm -f *.o profphd_net
make[2]: Leaving directory '/build/profnet-1.0.22/src-phd'
rm -f *.[0123456789].gz
rm -rf\
profnet-1.0.22 \
profnet-1.0.22.tar.gz
make[1]: Leaving directory '/build/profnet-1.0.22'
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
debian/rules override_dh_auto_build
make[1]: Entering directory '/build/profnet-1.0.22'
make patch
make[2]: Entering directory '/build/profnet-1.0.22'
mkdir -p bval_dir && rsync -avC src/. ./bval_dir/.
sending incremental file list
./
Doc-lib-nn
Doc-nn.txt
Makefile
PROFin.dat
RUN-special
ReadMe-mac
compile_macintel.csh
lib-LINUX.f
lib-prof.f
lib-sys-ALPHA.f
lib-sys-LINUX.f
lib-sys-MAC.f
lib-sys-MACIBM.f
lib-sys-MACINTEL.f
lib-sys-SGI64.f
make.ALPHA
make.LINUX
make.LINUX-pgi
make.MAC
make.MACIBM
make.MACINTEL
make.SGI32
make.SGI64
make.SGI64_no64
prof.f
profPar.f
tmp.f
sent 370,206 bytes received 532 bytes 741,476.00 bytes/sec
total size is 368,458 speedup is 0.99
patch -p 1 -E -d bval_dir < bval.patch && touch bval_dir/patch_stamp
patching file Makefile
patching file prof.f
patching file profPar.f
mkdir -p chop_dir && rsync -avC src/. ./chop_dir/.
sending incremental file list
./
Doc-lib-nn
Doc-nn.txt
Makefile
PROFin.dat
RUN-special
ReadMe-mac
compile_macintel.csh
lib-LINUX.f
lib-prof.f
lib-sys-ALPHA.f
lib-sys-LINUX.f
lib-sys-MAC.f
lib-sys-MACIBM.f
lib-sys-MACINTEL.f
lib-sys-SGI64.f
make.ALPHA
make.LINUX
make.LINUX-pgi
make.MAC
make.MACIBM
make.MACINTEL
make.SGI32
make.SGI64
make.SGI64_no64
prof.f
profPar.f
tmp.f
sent 370,206 bytes received 532 bytes 741,476.00 bytes/sec
total size is 368,458 speedup is 0.99
patch -p 1 -E -d chop_dir < chop.patch && touch chop_dir/patch_stamp
patching file Makefile
Hunk #1 succeeded at 1 with fuzz 1.
mkdir -p con_dir && rsync -avC src/. ./con_dir/.
sending incremental file list
./
Doc-lib-nn
Doc-nn.txt
Makefile
PROFin.dat
RUN-special
ReadMe-mac
compile_macintel.csh
lib-LINUX.f
lib-prof.f
lib-sys-ALPHA.f
lib-sys-LINUX.f
lib-sys-MAC.f
lib-sys-MACIBM.f
lib-sys-MACINTEL.f
lib-sys-SGI64.f
make.ALPHA
make.LINUX
make.LINUX-pgi
make.MAC
make.MACIBM
make.MACINTEL
make.SGI32
make.SGI64
make.SGI64_no64
prof.f
profPar.f
tmp.f
sent 370,206 bytes received 532 bytes 741,476.00 bytes/sec
total size is 368,458 speedup is 0.99
patch -p 1 -E -d con_dir < con.patch && touch con_dir/patch_stamp
patching file Makefile
Hunk #1 succeeded at 1 with fuzz 1.
patching file profPar.f
mkdir -p isis_dir && rsync -avC src/. ./isis_dir/.
sending incremental file list
./
Doc-lib-nn
Doc-nn.txt
Makefile
PROFin.dat
RUN-special
ReadMe-mac
compile_macintel.csh
lib-LINUX.f
lib-prof.f
lib-sys-ALPHA.f
lib-sys-LINUX.f
lib-sys-MAC.f
lib-sys-MACIBM.f
lib-sys-MACINTEL.f
lib-sys-SGI64.f
make.ALPHA
make.LINUX
make.LINUX-pgi
make.MAC
make.MACIBM
make.MACINTEL
make.SGI32
make.SGI64
make.SGI64_no64
prof.f
profPar.f
tmp.f
sent 370,206 bytes received 532 bytes 741,476.00 bytes/sec
total size is 368,458 speedup is 0.99
patch -p 1 -E -d isis_dir < isis.patch && touch isis_dir/patch_stamp
patching file Makefile
Hunk #1 succeeded at 1 with fuzz 1.
patching file profPar.f
mkdir -p md_dir && rsync -avC src/. ./md_dir/.
sending incremental file list
./
Doc-lib-nn
Doc-nn.txt
Makefile
PROFin.dat
RUN-special
ReadMe-mac
compile_macintel.csh
lib-LINUX.f
lib-prof.f
lib-sys-ALPHA.f
lib-sys-LINUX.f
lib-sys-MAC.f
lib-sys-MACIBM.f
lib-sys-MACINTEL.f
lib-sys-SGI64.f
make.ALPHA
make.LINUX
make.LINUX-pgi
make.MAC
make.MACIBM
make.MACINTEL
make.SGI32
make.SGI64
make.SGI64_no64
prof.f
profPar.f
tmp.f
sent 370,206 bytes received 532 bytes 741,476.00 bytes/sec
total size is 368,458 speedup is 0.99
patch -p 1 -E -d md_dir < md.patch && touch md_dir/patch_stamp
patching file Makefile
patching file prof.f
patching file profPar.f
mkdir -p norsnet_dir && rsync -avC src/. ./norsnet_dir/.
sending incremental file list
./
Doc-lib-nn
Doc-nn.txt
Makefile
PROFin.dat
RUN-special
ReadMe-mac
compile_macintel.csh
lib-LINUX.f
lib-prof.f
lib-sys-ALPHA.f
lib-sys-LINUX.f
lib-sys-MAC.f
lib-sys-MACIBM.f
lib-sys-MACINTEL.f
lib-sys-SGI64.f
make.ALPHA
make.LINUX
make.LINUX-pgi
make.MAC
make.MACIBM
make.MACINTEL
make.SGI32
make.SGI64
make.SGI64_no64
prof.f
profPar.f
tmp.f
sent 370,206 bytes received 532 bytes 741,476.00 bytes/sec
total size is 368,458 speedup is 0.99
patch -p 1 -E -d norsnet_dir < norsnet.patch && touch norsnet_dir/patch_stamp
patching file Makefile
patching file prof.f
patching file profPar.f
mkdir -p prof_dir && rsync -avC src/. ./prof_dir/.
sending incremental file list
./
Doc-lib-nn
Doc-nn.txt
Makefile
PROFin.dat
RUN-special
ReadMe-mac
compile_macintel.csh
lib-LINUX.f
lib-prof.f
lib-sys-ALPHA.f
lib-sys-LINUX.f
lib-sys-MAC.f
lib-sys-MACIBM.f
lib-sys-MACINTEL.f
lib-sys-SGI64.f
make.ALPHA
make.LINUX
make.LINUX-pgi
make.MAC
make.MACIBM
make.MACINTEL
make.SGI32
make.SGI64
make.SGI64_no64
prof.f
profPar.f
tmp.f
sent 370,206 bytes received 532 bytes 741,476.00 bytes/sec
total size is 368,458 speedup is 0.99
patch -p 1 -E -d prof_dir < prof.patch && touch prof_dir/patch_stamp
mkdir -p snapfun_dir && rsync -avC src/. ./snapfun_dir/.
sending incremental file list
./
Doc-lib-nn
Doc-nn.txt
Makefile
PROFin.dat
RUN-special
ReadMe-mac
compile_macintel.csh
lib-LINUX.f
lib-prof.f
lib-sys-ALPHA.f
lib-sys-LINUX.f
lib-sys-MAC.f
lib-sys-MACIBM.f
lib-sys-MACINTEL.f
lib-sys-SGI64.f
make.ALPHA
make.LINUX
make.LINUX-pgi
make.MAC
make.MACIBM
make.MACINTEL
make.SGI32
make.SGI64
make.SGI64_no64
prof.f
profPar.f
tmp.f
sent 370,206 bytes received 532 bytes 741,476.00 bytes/sec
total size is 368,458 speedup is 0.99
patch -p 1 -E -d snapfun_dir < snapfun.patch && touch snapfun_dir/patch_stamp
patching file Makefile
patching file Makefile.orig
patching file profPar.f
make[2]: Leaving directory '/build/profnet-1.0.22'
make CFLAGS="-g -O2 -ffile-prefix-map=/build/profnet-1.0.22=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now"
make[2]: Entering directory '/build/profnet-1.0.22'
make -C bval_dir
make[3]: Entering directory '/build/profnet-1.0.22/bval_dir'
--- making profnet_bval
gfortran -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/profnet-1.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fallow-argument-mismatch -fallow-argument-mismatch -O2 -Wuninitialized -Wall -Wno-unused -Wl,-z,relro -Wl,-z,now -o profnet_bval prof.f lib-prof.f lib-sys-LINUX.f
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
prof.f:527:28:
527 | ERRBINSTOP= 0.95
| 1
Warning: Change of value in conversion from 'REAL(4)' to 'INTEGER(4)' at (1) [-Wconversion]
prof.f:1853:24:
1853 | CALL RDPAR_ERR('NUMIN',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (5/456) at (1)
prof.f:1856:24:
1856 | CALL RDPAR_ERR('NUMHID',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1)
prof.f:1859:24:
1859 | CALL RDPAR_ERR('NUMOUT',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1)
prof.f:1864:24:
1864 | CALL RDPAR_ERR('NUMSAM',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1)
prof.f:1870:24:
1870 | CALL RDPAR_ERR(HC,VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (80/456) at (1)
prof.f:1873:24:
1873 | CALL RDPAR_ERR(HC,VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (80/456) at (1)
prof.f:1876:24:
1876 | CALL RDPAR_ERR(HC,VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (80/456) at (1)
prof.f:1879:24:
1879 | CALL RDPAR_ERR(HC,VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (80/456) at (1)
prof.f:1885:24:
1885 | CALL RDPAR_ERR('STPSWPMAX',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (9/456) at (1)
prof.f:1888:24:
1888 | CALL RDPAR_ERR('STPMAX',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1)
prof.f:1891:24:
1891 | CALL RDPAR_ERR('STPINF',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1)
prof.f:1334:45:
1334 | SUBROUTINE RDIN_HEAD(NUMINLOC,NUMSAMLOC)
| 1
Warning: Unused dummy argument 'numsamloc' at (1) [-Wunused-dummy-argument]
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
make[3]: Leaving directory '/build/profnet-1.0.22/bval_dir'
make -C chop_dir
make[3]: Entering directory '/build/profnet-1.0.22/chop_dir'
--- making profnet_chop
gfortran -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/profnet-1.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fallow-argument-mismatch -fallow-argument-mismatch -O2 -Wuninitialized -Wall -Wno-unused -Wl,-z,relro -Wl,-z,now -o profnet_chop prof.f lib-prof.f lib-sys-LINUX.f
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
prof.f:527:28:
527 | ERRBINSTOP= 0.95
| 1
Warning: Change of value in conversion from 'REAL(4)' to 'INTEGER(4)' at (1) [-Wconversion]
prof.f:1853:24:
1853 | CALL RDPAR_ERR('NUMIN ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1)
prof.f:1856:24:
1856 | CALL RDPAR_ERR('NUMHID ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1)
prof.f:1859:24:
1859 | CALL RDPAR_ERR('NUMOUT ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1)
prof.f:1864:24:
1864 | CALL RDPAR_ERR('NUMSAM ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1)
prof.f:1870:24:
1870 | CALL RDPAR_ERR(HC // ' ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1)
prof.f:1873:24:
1873 | CALL RDPAR_ERR(HC // ' ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1)
prof.f:1876:24:
1876 | CALL RDPAR_ERR(HC // ' ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1)
prof.f:1879:24:
1879 | CALL RDPAR_ERR(HC // ' ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1)
prof.f:1885:24:
1885 | CALL RDPAR_ERR('STPSWPMAX ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (10/456) at (1)
prof.f:1888:24:
1888 | CALL RDPAR_ERR('STPMAX ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1)
prof.f:1891:24:
1891 | CALL RDPAR_ERR('STPINF ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1)
prof.f:1334:45:
1334 | SUBROUTINE RDIN_HEAD(NUMINLOC,NUMSAMLOC)
| 1
Warning: Unused dummy argument 'numsamloc' at (1) [-Wunused-dummy-argument]
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
make[3]: Leaving directory '/build/profnet-1.0.22/chop_dir'
make -C con_dir
make[3]: Entering directory '/build/profnet-1.0.22/con_dir'
--- making profnet_con
gfortran -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/profnet-1.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fallow-argument-mismatch -fallow-argument-mismatch -O2 -Wuninitialized -Wall -Wno-unused -Wl,-z,relro -Wl,-z,now -o profnet_con prof.f lib-prof.f lib-sys-LINUX.f
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
prof.f:527:28:
527 | ERRBINSTOP= 0.95
| 1
Warning: Change of value in conversion from 'REAL(4)' to 'INTEGER(4)' at (1) [-Wconversion]
prof.f:1853:24:
1853 | CALL RDPAR_ERR('NUMIN ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1)
prof.f:1856:24:
1856 | CALL RDPAR_ERR('NUMHID ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1)
prof.f:1859:24:
1859 | CALL RDPAR_ERR('NUMOUT ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1)
prof.f:1864:24:
1864 | CALL RDPAR_ERR('NUMSAM ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1)
prof.f:1870:24:
1870 | CALL RDPAR_ERR(HC // ' ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1)
prof.f:1873:24:
1873 | CALL RDPAR_ERR(HC // ' ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1)
prof.f:1876:24:
1876 | CALL RDPAR_ERR(HC // ' ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1)
prof.f:1879:24:
1879 | CALL RDPAR_ERR(HC // ' ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1)
prof.f:1885:24:
1885 | CALL RDPAR_ERR('STPSWPMAX ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (10/456) at (1)
prof.f:1888:24:
1888 | CALL RDPAR_ERR('STPMAX ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1)
prof.f:1891:24:
1891 | CALL RDPAR_ERR('STPINF ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1)
prof.f:1334:45:
1334 | SUBROUTINE RDIN_HEAD(NUMINLOC,NUMSAMLOC)
| 1
Warning: Unused dummy argument 'numsamloc' at (1) [-Wunused-dummy-argument]
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
make[3]: Leaving directory '/build/profnet-1.0.22/con_dir'
make -C isis_dir
make[3]: Entering directory '/build/profnet-1.0.22/isis_dir'
--- making profnet_isis
gfortran -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/profnet-1.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fallow-argument-mismatch -fallow-argument-mismatch -O2 -Wuninitialized -Wall -Wno-unused -Wl,-z,relro -Wl,-z,now -o profnet_isis prof.f lib-prof.f lib-sys-LINUX.f
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
prof.f:527:28:
527 | ERRBINSTOP= 0.95
| 1
Warning: Change of value in conversion from 'REAL(4)' to 'INTEGER(4)' at (1) [-Wconversion]
prof.f:1853:24:
1853 | CALL RDPAR_ERR('NUMIN ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1)
prof.f:1856:24:
1856 | CALL RDPAR_ERR('NUMHID ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1)
prof.f:1859:24:
1859 | CALL RDPAR_ERR('NUMOUT ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1)
prof.f:1864:24:
1864 | CALL RDPAR_ERR('NUMSAM ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1)
prof.f:1870:24:
1870 | CALL RDPAR_ERR(HC // ' ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1)
prof.f:1873:24:
1873 | CALL RDPAR_ERR(HC // ' ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1)
prof.f:1876:24:
1876 | CALL RDPAR_ERR(HC // ' ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1)
prof.f:1879:24:
1879 | CALL RDPAR_ERR(HC // ' ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1)
prof.f:1885:24:
1885 | CALL RDPAR_ERR('STPSWPMAX ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (10/456) at (1)
prof.f:1888:24:
1888 | CALL RDPAR_ERR('STPMAX ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1)
prof.f:1891:24:
1891 | CALL RDPAR_ERR('STPINF ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1)
prof.f:1334:45:
1334 | SUBROUTINE RDIN_HEAD(NUMINLOC,NUMSAMLOC)
| 1
Warning: Unused dummy argument 'numsamloc' at (1) [-Wunused-dummy-argument]
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
make[3]: Leaving directory '/build/profnet-1.0.22/isis_dir'
make -C md_dir
make[3]: Entering directory '/build/profnet-1.0.22/md_dir'
--- making profnet_md
gfortran -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/profnet-1.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fallow-argument-mismatch -fallow-argument-mismatch -O2 -Wuninitialized -Wall -Wno-unused -Wl,-z,relro -Wl,-z,now -o profnet_md prof.f lib-prof.f lib-sys-LINUX.f
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
prof.f:527:28:
527 | ERRBINSTOP= 0.95
| 1
Warning: Change of value in conversion from 'REAL(4)' to 'INTEGER(4)' at (1) [-Wconversion]
prof.f:1853:24:
1853 | CALL RDPAR_ERR('NUMIN',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (5/456) at (1)
prof.f:1856:24:
1856 | CALL RDPAR_ERR('NUMHID',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1)
prof.f:1859:24:
1859 | CALL RDPAR_ERR('NUMOUT',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1)
prof.f:1864:24:
1864 | CALL RDPAR_ERR('NUMSAM',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1)
prof.f:1870:24:
1870 | CALL RDPAR_ERR(HC,VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (80/456) at (1)
prof.f:1873:24:
1873 | CALL RDPAR_ERR(HC,VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (80/456) at (1)
prof.f:1876:24:
1876 | CALL RDPAR_ERR(HC,VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (80/456) at (1)
prof.f:1879:24:
1879 | CALL RDPAR_ERR(HC,VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (80/456) at (1)
prof.f:1885:24:
1885 | CALL RDPAR_ERR('STPSWPMAX',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (9/456) at (1)
prof.f:1888:24:
1888 | CALL RDPAR_ERR('STPMAX',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1)
prof.f:1891:24:
1891 | CALL RDPAR_ERR('STPINF',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1)
prof.f:1334:45:
1334 | SUBROUTINE RDIN_HEAD(NUMINLOC,NUMSAMLOC)
| 1
Warning: Unused dummy argument 'numsamloc' at (1) [-Wunused-dummy-argument]
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
make[3]: Leaving directory '/build/profnet-1.0.22/md_dir'
make -C norsnet_dir
make[3]: Entering directory '/build/profnet-1.0.22/norsnet_dir'
--- making profnet_norsnet
gfortran -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/profnet-1.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fallow-argument-mismatch -fallow-argument-mismatch -O2 -Wuninitialized -Wall -Wno-unused -Wl,-z,relro -Wl,-z,now -o profnet_norsnet prof.f lib-prof.f lib-sys-LINUX.f
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
prof.f:527:28:
527 | ERRBINSTOP= 0.95
| 1
Warning: Change of value in conversion from 'REAL(4)' to 'INTEGER(4)' at (1) [-Wconversion]
prof.f:1853:24:
1853 | CALL RDPAR_ERR('NUMIN',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (5/456) at (1)
prof.f:1856:24:
1856 | CALL RDPAR_ERR('NUMHID',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1)
prof.f:1859:24:
1859 | CALL RDPAR_ERR('NUMOUT',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1)
prof.f:1864:24:
1864 | CALL RDPAR_ERR('NUMSAM',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1)
prof.f:1870:24:
1870 | CALL RDPAR_ERR(HC,VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (80/456) at (1)
prof.f:1873:24:
1873 | CALL RDPAR_ERR(HC,VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (80/456) at (1)
prof.f:1876:24:
1876 | CALL RDPAR_ERR(HC,VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (80/456) at (1)
prof.f:1879:24:
1879 | CALL RDPAR_ERR(HC,VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (80/456) at (1)
prof.f:1885:24:
1885 | CALL RDPAR_ERR('STPSWPMAX',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (9/456) at (1)
prof.f:1888:24:
1888 | CALL RDPAR_ERR('STPMAX',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1)
prof.f:1891:24:
1891 | CALL RDPAR_ERR('STPINF',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1)
prof.f:1334:45:
1334 | SUBROUTINE RDIN_HEAD(NUMINLOC,NUMSAMLOC)
| 1
Warning: Unused dummy argument 'numsamloc' at (1) [-Wunused-dummy-argument]
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
make[3]: Leaving directory '/build/profnet-1.0.22/norsnet_dir'
make -C prof_dir
make[3]: Entering directory '/build/profnet-1.0.22/prof_dir'
--- making profnet_prof
gfortran -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/profnet-1.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fallow-argument-mismatch -fallow-argument-mismatch -O2 -Wuninitialized -Wall -Wno-unused -Wl,-z,relro -Wl,-z,now -o profnet_prof prof.f lib-prof.f lib-sys-LINUX.f
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
prof.f:527:28:
527 | ERRBINSTOP= 0.95
| 1
Warning: Change of value in conversion from 'REAL(4)' to 'INTEGER(4)' at (1) [-Wconversion]
prof.f:1853:24:
1853 | CALL RDPAR_ERR('NUMIN ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1)
prof.f:1856:24:
1856 | CALL RDPAR_ERR('NUMHID ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1)
prof.f:1859:24:
1859 | CALL RDPAR_ERR('NUMOUT ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1)
prof.f:1864:24:
1864 | CALL RDPAR_ERR('NUMSAM ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1)
prof.f:1870:24:
1870 | CALL RDPAR_ERR(HC // ' ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1)
prof.f:1873:24:
1873 | CALL RDPAR_ERR(HC // ' ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1)
prof.f:1876:24:
1876 | CALL RDPAR_ERR(HC // ' ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1)
prof.f:1879:24:
1879 | CALL RDPAR_ERR(HC // ' ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1)
prof.f:1885:24:
1885 | CALL RDPAR_ERR('STPSWPMAX ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (10/456) at (1)
prof.f:1888:24:
1888 | CALL RDPAR_ERR('STPMAX ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1)
prof.f:1891:24:
1891 | CALL RDPAR_ERR('STPINF ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1)
prof.f:1334:45:
1334 | SUBROUTINE RDIN_HEAD(NUMINLOC,NUMSAMLOC)
| 1
Warning: Unused dummy argument 'numsamloc' at (1) [-Wunused-dummy-argument]
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
make[3]: Leaving directory '/build/profnet-1.0.22/prof_dir'
make -C snapfun_dir
make[3]: Entering directory '/build/profnet-1.0.22/snapfun_dir'
--- making profnet_snapfun
gfortran -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/profnet-1.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fallow-argument-mismatch -fallow-argument-mismatch -O2 -Wuninitialized -Wall -Wno-unused -Wl,-z,relro -Wl,-z,now -o profnet_snapfun prof.f lib-prof.f lib-sys-LINUX.f
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
prof.f:527:28:
527 | ERRBINSTOP= 0.95
| 1
Warning: Change of value in conversion from 'REAL(4)' to 'INTEGER(4)' at (1) [-Wconversion]
prof.f:1853:24:
1853 | CALL RDPAR_ERR('NUMIN ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (6/456) at (1)
prof.f:1856:24:
1856 | CALL RDPAR_ERR('NUMHID ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1)
prof.f:1859:24:
1859 | CALL RDPAR_ERR('NUMOUT ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1)
prof.f:1864:24:
1864 | CALL RDPAR_ERR('NUMSAM ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1)
prof.f:1870:24:
1870 | CALL RDPAR_ERR(HC // ' ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1)
prof.f:1873:24:
1873 | CALL RDPAR_ERR(HC // ' ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1)
prof.f:1876:24:
1876 | CALL RDPAR_ERR(HC // ' ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1)
prof.f:1879:24:
1879 | CALL RDPAR_ERR(HC // ' ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (81/456) at (1)
prof.f:1885:24:
1885 | CALL RDPAR_ERR('STPSWPMAX ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (10/456) at (1)
prof.f:1888:24:
1888 | CALL RDPAR_ERR('STPMAX ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1)
prof.f:1891:24:
1891 | CALL RDPAR_ERR('STPINF ',VARIN)
| 1
Warning: Character length of actual argument shorter than of dummy argument 'char_rd' (7/456) at (1)
prof.f:1334:45:
1334 | SUBROUTINE RDIN_HEAD(NUMINLOC,NUMSAMLOC)
| 1
Warning: Unused dummy argument 'numsamloc' at (1) [-Wunused-dummy-argument]
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
make[3]: Leaving directory '/build/profnet-1.0.22/snapfun_dir'
pod2man -c 'User Commands' -r "1.0.22-" profnet.pod | gzip -c > profnet.1.gz
profnet.pod around line 27: Expected text after =item, not a number
profnet.pod around line 31: Expected text after =item, not a number
profnet.pod around line 35: Expected text after =item, not a number
profnet.pod around line 39: Expected text after =item, not a number
profnet.pod around line 43: Expected text after =item, not a number
profnet.pod around line 47: Expected text after =item, not a number
profnet.pod around line 51: Expected text after =item, not a number
profnet.pod around line 55: Expected text after =item, not a number
profnet.pod around line 59: Expected text after =item, not a number
profnet.pod around line 63: Expected text after =item, not a number
POD document had syntax errors at /usr/bin/pod2man line 69.
make -C src-phd
make[3]: Entering directory '/build/profnet-1.0.22/src-phd'
gfortran `echo -g -O2 -ffile-prefix-map=/build/profnet-1.0.22=. -fstack-protector-strong -Wformat -Werror=format-security | sed 's/-Wformat -Werror=format-security/-fallow-argument-mismatch/'` -O3 -fbounds-check -Wall -Wl,-z,relro -Wl,-z,now -o profphd_net phd.f lib-phd.f
phd.f:8107:5:
8107 | 19991 CONTINUE
| 1
Warning: Label 19991 at (1) defined but not used [-Wunused-label]
phd.f:7860:72:
7860 | INTERPROTNAME(1:7)=PROTNAME(1)
| 1
Warning: CHARACTER expression will be truncated in assignment (7/132) at (1) [-Wcharacter-truncation]
phd.f:7785:72:
7785 | INTERPROTNAME(1:7)=PROTNAME(1)
| 1
Warning: CHARACTER expression will be truncated in assignment (7/132) at (1) [-Wcharacter-truncation]
phd.f:4475:72:
4475 | TEMPSTRING(1:)=CSTRING(1:)
| 1
Warning: CHARACTER expression will be truncated in assignment (200/222) at (1) [-Wcharacter-truncation]
phd.f:4479:72:
4479 | TEMPSTRING(1:)=CSTRING(1:)
| 1
Warning: CHARACTER expression will be truncated in assignment (200/222) at (1) [-Wcharacter-truncation]
phd.f:2139:52:
357 | CALL SRMAX1(OUTLOC,NUMOUTMAX,RMAX,IMAX)
| 2
......
2139 | CALL SRMAX1(INTERMAX,NUMOUTMAX,INTERMAXVAL,INTERMAXPOS)
| 1
Warning: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(2)/INTEGER(4)).
phd.f:1437:40:
1437 | CHARACTER*1 FC_REXP_TO_3STCHAR,FC_REXPI_TO_3STCHAR
| 1
Warning: Unused variable 'fc_rexp_to_3stchar' declared at (1) [-Wunused-variable]
phd.f:3687:60:
3687 | + IPROTNAME(MAXALIGNS),ACCNUM(MAXALIGNS),
| 1
Warning: Array 'accnum' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
phd.f:3672:37:
3672 | CHARACTER*7 COLS(NUMRESMAX)
| 1
Warning: Array 'cols' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
phd.f:3597:40:
3597 | CHARACTER*132 CPROTID(MAXALIGNS)
| 1
Warning: Array 'cprotid' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
phd.f:3686:39:
3686 | CHARACTER*132 EMBLID(MAXALIGNS),STRID(MAXALIGNS),
| 1
Warning: Array 'emblid' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
phd.f:3688:44:
3688 | + EXCLUDEFLAG(MAXALIGNS)
| 1
Warning: Array 'excludeflag' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
phd.f:3687:42:
3687 | + IPROTNAME(MAXALIGNS),ACCNUM(MAXALIGNS),
| 1
Warning: Array 'iprotname' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
phd.f:3587:46:
3587 | INTEGER PROFILE(NUMRESMAX,MAXAA)
| 1
Warning: Array 'profile' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
phd.f:3700:46:
3700 | INTEGER SEQPROF(NUMRESMAX,MAXAA),
| 1
Warning: Array 'seqprof' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
phd.f:3686:56:
3686 | CHARACTER*132 EMBLID(MAXALIGNS),STRID(MAXALIGNS),
| 1
Warning: Array 'strid' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
phd.f:3923:30:
3923 | + ACC,NOCC,VAR,ALISEQ,ALIPOINTER,
| 1
Warning: Unused dummy argument 'aliseq' at (1) [-Wunused-dummy-argument]
phd.f:3922:58:
3922 | + PDBNO,PDBSEQ,CHAINID,SECSTR,COLS,SHEETLABEL,BP1,BP2,
| 1
Warning: Unused dummy argument 'bp1' at (1) [-Wunused-dummy-argument]
phd.f:3922:62:
3922 | + PDBNO,PDBSEQ,CHAINID,SECSTR,COLS,SHEETLABEL,BP1,BP2,
| 1
Warning: Unused dummy argument 'bp2' at (1) [-Wunused-dummy-argument]
phd.f:3924:36:
3924 | + SEQPROF,NDEL,NINS,ENTROPY,RELENT,CONSWEIGHT,
| 1
Warning: Unused dummy argument 'entropy' at (1) [-Wunused-dummy-argument]
phd.f:3916:31:
3916 | + MAXRES,MAXALIGNS_LOC,MAXCORE_LOC,
| 1
Warning: Unused dummy argument 'maxaligns_loc' at (1) [-Wunused-dummy-argument]
phd.f:3916:43:
3916 | + MAXRES,MAXALIGNS_LOC,MAXCORE_LOC,
| 1
Warning: Unused dummy argument 'maxcore_loc' at (1) [-Wunused-dummy-argument]
phd.f:3916:17:
3916 | + MAXRES,MAXALIGNS_LOC,MAXCORE_LOC,
| 1
Warning: Unused dummy argument 'maxres' at (1) [-Wunused-dummy-argument]
phd.f:3924:43:
3924 | + SEQPROF,NDEL,NINS,ENTROPY,RELENT,CONSWEIGHT,
| 1
Warning: Unused dummy argument 'relent' at (1) [-Wunused-dummy-argument]
phd.f:3922:54:
3922 | + PDBNO,PDBSEQ,CHAINID,SECSTR,COLS,SHEETLABEL,BP1,BP2,
| 1
Warning: Unused dummy argument 'sheetlabel' at (1) [-Wunused-dummy-argument]
phd.f:3923:23:
3923 | + ACC,NOCC,VAR,ALISEQ,ALIPOINTER,
| 1
Warning: Unused dummy argument 'var' at (1) [-Wunused-dummy-argument]
phd.f:64:41:
64 | REAL TIME0,FRTIME_SECNDS
| 1
Warning: Unused variable 'frtime_secnds' declared at (1) [-Wunused-variable]
make[3]: Leaving directory '/build/profnet-1.0.22/src-phd'
make[2]: Leaving directory '/build/profnet-1.0.22'
make[1]: Leaving directory '/build/profnet-1.0.22'
dh_auto_test
create-stamp debian/debhelper-build-stamp
dh_prep
debian/rules override_dh_auto_install
make[1]: Entering directory '/build/profnet-1.0.22'
/usr/bin/make DESTDIR=/build/profnet-1.0.22/debian/profnet-bval prefix=/usr install-bval
make[2]: Entering directory '/build/profnet-1.0.22'
mkdir -p /build/profnet-1.0.22/debian/profnet-bval/usr/bin && \
cp -a bval_dir/profnet_bval \
/build/profnet-1.0.22/debian/profnet-bval/usr/bin/
mkdir -p /build/profnet-1.0.22/debian/profnet-bval/usr/share/man/man1 && cp profnet.1.gz /build/profnet-1.0.22/debian/profnet-bval/usr/share/man/man1/profnet_bval.1.gz
make[2]: Leaving directory '/build/profnet-1.0.22'
/usr/bin/make DESTDIR=/build/profnet-1.0.22/debian/profnet-chop prefix=/usr install-chop
make[2]: Entering directory '/build/profnet-1.0.22'
mkdir -p /build/profnet-1.0.22/debian/profnet-chop/usr/bin && \
cp -a chop_dir/profnet_chop \
/build/profnet-1.0.22/debian/profnet-chop/usr/bin/
mkdir -p /build/profnet-1.0.22/debian/profnet-chop/usr/share/man/man1 && cp profnet.1.gz /build/profnet-1.0.22/debian/profnet-chop/usr/share/man/man1/profnet_chop.1.gz
make[2]: Leaving directory '/build/profnet-1.0.22'
/usr/bin/make DESTDIR=/build/profnet-1.0.22/debian/profnet-con prefix=/usr install-con
make[2]: Entering directory '/build/profnet-1.0.22'
mkdir -p /build/profnet-1.0.22/debian/profnet-con/usr/bin && \
cp -a con_dir/profnet_con \
/build/profnet-1.0.22/debian/profnet-con/usr/bin/
mkdir -p /build/profnet-1.0.22/debian/profnet-con/usr/share/man/man1 && cp profnet.1.gz /build/profnet-1.0.22/debian/profnet-con/usr/share/man/man1/profnet_con.1.gz
make[2]: Leaving directory '/build/profnet-1.0.22'
/usr/bin/make DESTDIR=/build/profnet-1.0.22/debian/profnet-isis prefix=/usr install-isis
make[2]: Entering directory '/build/profnet-1.0.22'
mkdir -p /build/profnet-1.0.22/debian/profnet-isis/usr/bin && \
cp -a isis_dir/profnet_isis \
/build/profnet-1.0.22/debian/profnet-isis/usr/bin/
mkdir -p /build/profnet-1.0.22/debian/profnet-isis/usr/share/man/man1 && cp profnet.1.gz /build/profnet-1.0.22/debian/profnet-isis/usr/share/man/man1/profnet_isis.1.gz
make[2]: Leaving directory '/build/profnet-1.0.22'
/usr/bin/make DESTDIR=/build/profnet-1.0.22/debian/profnet-md prefix=/usr install-md
make[2]: Entering directory '/build/profnet-1.0.22'
mkdir -p /build/profnet-1.0.22/debian/profnet-md/usr/bin && \
cp -a md_dir/profnet_md \
/build/profnet-1.0.22/debian/profnet-md/usr/bin/
mkdir -p /build/profnet-1.0.22/debian/profnet-md/usr/share/man/man1 && cp profnet.1.gz /build/profnet-1.0.22/debian/profnet-md/usr/share/man/man1/profnet_md.1.gz
make[2]: Leaving directory '/build/profnet-1.0.22'
/usr/bin/make DESTDIR=/build/profnet-1.0.22/debian/profnet-norsnet prefix=/usr install-norsnet
make[2]: Entering directory '/build/profnet-1.0.22'
mkdir -p /build/profnet-1.0.22/debian/profnet-norsnet/usr/bin && \
cp -a norsnet_dir/profnet_norsnet \
/build/profnet-1.0.22/debian/profnet-norsnet/usr/bin/
mkdir -p /build/profnet-1.0.22/debian/profnet-norsnet/usr/share/man/man1 && cp profnet.1.gz /build/profnet-1.0.22/debian/profnet-norsnet/usr/share/man/man1/profnet_norsnet.1.gz
make[2]: Leaving directory '/build/profnet-1.0.22'
/usr/bin/make DESTDIR=/build/profnet-1.0.22/debian/profnet-prof prefix=/usr install-prof
make[2]: Entering directory '/build/profnet-1.0.22'
mkdir -p /build/profnet-1.0.22/debian/profnet-prof/usr/bin && \
cp -a prof_dir/profnet_prof \
/build/profnet-1.0.22/debian/profnet-prof/usr/bin/
mkdir -p /build/profnet-1.0.22/debian/profnet-prof/usr/share/man/man1 && cp profnet.1.gz /build/profnet-1.0.22/debian/profnet-prof/usr/share/man/man1/profnet_prof.1.gz
make[2]: Leaving directory '/build/profnet-1.0.22'
/usr/bin/make DESTDIR=/build/profnet-1.0.22/debian/profnet-snapfun prefix=/usr install-snapfun
make[2]: Entering directory '/build/profnet-1.0.22'
mkdir -p /build/profnet-1.0.22/debian/profnet-snapfun/usr/bin && \
cp -a snapfun_dir/profnet_snapfun \
/build/profnet-1.0.22/debian/profnet-snapfun/usr/bin/
mkdir -p /build/profnet-1.0.22/debian/profnet-snapfun/usr/share/man/man1 && cp profnet.1.gz /build/profnet-1.0.22/debian/profnet-snapfun/usr/share/man/man1/profnet_snapfun.1.gz
make[2]: Leaving directory '/build/profnet-1.0.22'
/usr/bin/make DESTDIR=/build/profnet-1.0.22/debian/profphd-net prefix=/usr install-phd
make[2]: Entering directory '/build/profnet-1.0.22'
/usr/bin/make -C src-phd install
make[3]: Entering directory '/build/profnet-1.0.22/src-phd'
mkdir -p /build/profnet-1.0.22/debian/profphd-net/usr/bin && \
cp profphd_net /build/profnet-1.0.22/debian/profphd-net/usr/bin/
rm -f /build/profnet-1.0.22/debian/profphd-net/usr/bin/phd1994 && ln -s profphd_net /build/profnet-1.0.22/debian/profphd-net/usr/bin/phd1994
make[3]: Leaving directory '/build/profnet-1.0.22/src-phd'
mkdir -p /build/profnet-1.0.22/debian/profphd-net/usr/share/man/man1 && cp profnet.1.gz /build/profnet-1.0.22/debian/profphd-net/usr/share/man/man1/profphd_net.1.gz
rm -f /build/profnet-1.0.22/debian/profphd-net/usr/share/man/man1/phd1994.1.gz && ln -s profphd_net.1.gz /build/profnet-1.0.22/debian/profphd-net/usr/share/man/man1/phd1994.1.gz
make[2]: Leaving directory '/build/profnet-1.0.22'
make[1]: Leaving directory '/build/profnet-1.0.22'
dh_installdocs
dh_installchangelogs
dh_installexamples
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
debian/rules override_dh_shlibdeps
make[1]: Entering directory '/build/profnet-1.0.22'
dh_shlibdeps
# sneak in common part of package descriptions
for i in $(sed -n '/^Package: / s///p' debian/control); do \
cat debian/Description >> debian/$i.substvars; \
done;
make[1]: Leaving directory '/build/profnet-1.0.22'
dh_installdeb
dh_gencontrol
dpkg-gencontrol: warning: package profnet-con: substitution variable ${Description} unused, but is defined
dpkg-gencontrol: warning: package profnet-md: substitution variable ${Description} unused, but is defined
dpkg-gencontrol: warning: package profphd-net: substitution variable ${Description} unused, but is defined
dpkg-gencontrol: warning: package profnet-bval: substitution variable ${Description} unused, but is defined
dpkg-gencontrol: warning: package profnet-prof: substitution variable ${Description} unused, but is defined
dpkg-gencontrol: warning: package profnet-isis: substitution variable ${Description} unused, but is defined
dpkg-gencontrol: warning: package profnet-chop: substitution variable ${Description} unused, but is defined
dpkg-gencontrol: warning: package profnet-snapfun: substitution variable ${Description} unused, but is defined
dpkg-gencontrol: warning: package profnet-norsnet: substitution variable ${Description} unused, but is defined
dh_md5sums
dh_builddeb
dpkg-deb: building package 'profnet-chop-dbgsym' in '../profnet-chop-dbgsym_1.0.22-8_arm64.deb'.
dpkg-deb: building package 'profnet-bval' in '../profnet-bval_1.0.22-8_arm64.deb'.
dpkg-deb: building package 'profnet-prof' in '../profnet-prof_1.0.22-8_arm64.deb'.
dpkg-deb: building package 'profnet-md-dbgsym' in '../profnet-md-dbgsym_1.0.22-8_arm64.deb'.
dpkg-deb: building package 'profnet-snapfun-dbgsym' in '../profnet-snapfun-dbgsym_1.0.22-8_arm64.deb'.
dpkg-deb: building package 'profnet-isis' in '../profnet-isis_1.0.22-8_arm64.deb'.
dpkg-deb: building package 'profphd-net' in '../profphd-net_1.0.22-8_arm64.deb'.
dpkg-deb: building package 'profnet-norsnet' in '../profnet-norsnet_1.0.22-8_arm64.deb'.
dpkg-deb: building package 'profnet-con' in '../profnet-con_1.0.22-8_arm64.deb'.
dpkg-deb: building package 'profnet-bval-dbgsym' in '../profnet-bval-dbgsym_1.0.22-8_arm64.deb'.
dpkg-deb: building package 'profnet-norsnet-dbgsym' in '../profnet-norsnet-dbgsym_1.0.22-8_arm64.deb'.
dpkg-deb: building package 'profnet-chop' in '../profnet-chop_1.0.22-8_arm64.deb'.
dpkg-deb: building package 'profphd-net-dbgsym' in '../profphd-net-dbgsym_1.0.22-8_arm64.deb'.
dpkg-deb: building package 'profnet-isis-dbgsym' in '../profnet-isis-dbgsym_1.0.22-8_arm64.deb'.
dpkg-deb: building package 'profnet-prof-dbgsym' in '../profnet-prof-dbgsym_1.0.22-8_arm64.deb'.
dpkg-deb: building package 'profnet-md' in '../profnet-md_1.0.22-8_arm64.deb'.
dpkg-deb: building package 'profnet-snapfun' in '../profnet-snapfun_1.0.22-8_arm64.deb'.
dpkg-deb: building package 'profnet-con-dbgsym' in '../profnet-con-dbgsym_1.0.22-8_arm64.deb'.
dpkg-genbuildinfo --build=binary -O../profnet_1.0.22-8_arm64.buildinfo
dpkg-genchanges --build=binary -O../profnet_1.0.22-8_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/25419/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/25419/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/25419 and its subdirectories
I: Current time: Thu Jun 20 23:39:30 +14 2024
I: pbuilder-time-stamp: 1718876370