I: pbuilder: network access will be disabled during build
I: Current time: Sat Jun 8 09:57:46 +14 2024
I: pbuilder-time-stamp: 1717790266
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [python-pangolearn_2022-07-09+dfsg-2.dsc]
I: copying [./python-pangolearn_2022-07-09+dfsg.orig.tar.xz]
I: copying [./python-pangolearn_2022-07-09+dfsg-2.debian.tar.xz]
I: Extracting source
gpgv: Signature made Tue Feb 7 08:07:41 2023 +14
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./python-pangolearn_2022-07-09+dfsg-2.dsc: no acceptable signature found
dpkg-source: info: extracting python-pangolearn in python-pangolearn-2022-07-09+dfsg
dpkg-source: info: unpacking python-pangolearn_2022-07-09+dfsg.orig.tar.xz
dpkg-source: info: unpacking python-pangolearn_2022-07-09+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying pep440.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/23446/tmp/hooks/D01_modify_environment starting
debug: Running on codethink13-arm64.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 Jun 8 09:58 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/23446/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/23446/tmp/hooks/D02_print_environment starting
I: set
BASH=/bin/sh
BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
BASH_ALIASES=()
BASH_ARGC=()
BASH_ARGV=()
BASH_CMDS=()
BASH_LINENO=([0]="12" [1]="0")
BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu")
BASH_VERSION='5.2.15(1)-release'
BUILDDIR=/build
BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
BUILDUSERNAME=pbuilder2
BUILD_ARCH=arm64
DEBIAN_FRONTEND=noninteractive
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8'
DIRSTACK=()
DISTRIBUTION=bookworm
EUID=0
FUNCNAME=([0]="Echo" [1]="main")
GROUPS=()
HOME=/var/lib/jenkins
HOSTNAME=i-capture-the-hostname
HOSTTYPE=aarch64
HOST_ARCH=arm64
IFS='
'
LANG=C
LANGUAGE=nl_BE:nl
LC_ALL=C
MACHTYPE=aarch64-unknown-linux-gnu
MAIL=/var/mail/root
OPTERR=1
OPTIND=1
OSTYPE=linux-gnu
PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
PBCURRENTCOMMANDLINEOPERATION=build
PBUILDER_OPERATION=build
PBUILDER_PKGDATADIR=/usr/share/pbuilder
PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
PBUILDER_SYSCONFDIR=/etc
PIPESTATUS=([0]="0")
POSIXLY_CORRECT=y
PPID=23446
PS4='+ '
PWD=/
SHELL=/bin/bash
SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
SHLVL=3
SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.MlPMeuvv/pbuilderrc_NuGY --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.MlPMeuvv/b2 --logfile b2/build.log --extrapackages usrmerge python-pangolearn_2022-07-09+dfsg-2.dsc'
SUDO_GID=117
SUDO_UID=110
SUDO_USER=jenkins
TERM=unknown
TZ=/usr/share/zoneinfo/Etc/GMT-14
UID=0
USER=root
USERNAME=root
_='I: set'
http_proxy=http://192.168.101.16:3128
I: uname -a
Linux i-capture-the-hostname 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 May 6 2023 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/23446/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19616 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-python; however:
Package dh-python is not installed.
pbuilder-satisfydepends-dummy depends on python3-all; however:
Package python3-all is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget
0 packages upgraded, 47 newly installed, 0 to remove and 0 not upgraded.
Need to get 24.8 MB of archives. After unpacking 104 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-minimal arm64 3.11.2-6 [806 kB]
Get: 2 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB]
Get: 3 http://deb.debian.org/debian bookworm/main arm64 python3.11-minimal arm64 3.11.2-6 [1858 kB]
Get: 4 http://deb.debian.org/debian bookworm/main arm64 python3-minimal arm64 3.11.2-1+b1 [26.3 kB]
Get: 5 http://deb.debian.org/debian bookworm/main arm64 media-types all 10.0.0 [26.1 kB]
Get: 6 http://deb.debian.org/debian bookworm/main arm64 readline-common all 8.2-1.3 [69.0 kB]
Get: 7 http://deb.debian.org/debian bookworm/main arm64 libreadline8 arm64 8.2-1.3 [155 kB]
Get: 8 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-stdlib arm64 3.11.2-6 [1747 kB]
Get: 9 http://deb.debian.org/debian bookworm/main arm64 python3.11 arm64 3.11.2-6 [572 kB]
Get: 10 http://deb.debian.org/debian bookworm/main arm64 libpython3-stdlib arm64 3.11.2-1+b1 [9296 B]
Get: 11 http://deb.debian.org/debian bookworm/main arm64 python3 arm64 3.11.2-1+b1 [26.3 kB]
Get: 12 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 13 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB]
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Get: 15 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB]
Get: 16 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB]
Get: 17 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB]
Get: 18 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB]
Get: 19 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB]
Get: 20 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB]
Get: 21 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB]
Get: 22 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB]
Get: 23 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB]
Get: 24 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 25 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get: 26 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB]
Get: 27 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 28 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB]
Get: 29 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 30 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 31 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B]
Get: 32 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 33 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 34 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB]
Get: 35 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB]
Get: 36 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB]
Get: 37 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB]
Get: 38 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB]
Get: 39 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 40 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 41 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB]
Get: 42 http://deb.debian.org/debian bookworm/main arm64 python3-lib2to3 all 3.11.2-2 [76.2 kB]
Get: 43 http://deb.debian.org/debian bookworm/main arm64 python3-distutils all 3.11.2-2 [131 kB]
Get: 44 http://deb.debian.org/debian bookworm/main arm64 dh-python all 5.20230130 [104 kB]
Get: 45 http://deb.debian.org/debian bookworm/main arm64 python3-all arm64 3.11.2-1+b1 [1064 B]
Get: 46 http://deb.debian.org/debian bookworm/main arm64 python3-pkg-resources all 66.1.1-1 [296 kB]
Get: 47 http://deb.debian.org/debian bookworm/main arm64 python3-setuptools all 66.1.1-1 [521 kB]
Fetched 24.8 MB in 5s (4779 kB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libpython3.11-minimal:arm64.
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Setting up libpython3.11-minimal:arm64 (3.11.2-6) ...
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Selecting previously unselected package python3-minimal.
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Unpacking dh-autoreconf (20) ...
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Unpacking dh-python (5.20230130) ...
Selecting previously unselected package python3-all.
Preparing to unpack .../34-python3-all_3.11.2-1+b1_arm64.deb ...
Unpacking python3-all (3.11.2-1+b1) ...
Selecting previously unselected package python3-pkg-resources.
Preparing to unpack .../35-python3-pkg-resources_66.1.1-1_all.deb ...
Unpacking python3-pkg-resources (66.1.1-1) ...
Selecting previously unselected package python3-setuptools.
Preparing to unpack .../36-python3-setuptools_66.1.1-1_all.deb ...
Unpacking python3-setuptools (66.1.1-1) ...
Setting up media-types (10.0.0) ...
Setting up libpipeline1:arm64 (1.5.7-1) ...
Setting up libicu72:arm64 (72.1-3) ...
Setting up bsdextrautils (2.38.1-5+b1) ...
Setting up libmagic-mgc (1:5.44-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.11.4) ...
Setting up libmagic1:arm64 (1:5.44-3) ...
Setting up gettext-base (0.21-12) ...
Setting up m4 (1.4.19-3) ...
Setting up file (1:5.44-3) ...
Setting up autotools-dev (20220109.1) ...
Setting up autopoint (0.21-12) ...
Setting up autoconf (2.71-3) ...
Setting up sensible-utils (0.0.17+nmu1) ...
Setting up libuchardet0:arm64 (0.0.7-1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libelf1:arm64 (0.188-2.1) ...
Setting up readline-common (8.2-1.3) ...
Setting up libxml2:arm64 (2.9.14+dfsg-1.2) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up gettext (0.21-12) ...
Setting up libtool (2.4.7-5) ...
Setting up libreadline8:arm64 (8.2-1.3) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.22.4-10) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libpython3.11-stdlib:arm64 (3.11.2-6) ...
Setting up man-db (2.11.2-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libpython3-stdlib:arm64 (3.11.2-1+b1) ...
Setting up python3.11 (3.11.2-6) ...
Setting up debhelper (13.11.4) ...
Setting up python3 (3.11.2-1+b1) ...
Setting up python3-lib2to3 (3.11.2-2) ...
Setting up python3-pkg-resources (66.1.1-1) ...
Setting up python3-distutils (3.11.2-2) ...
Setting up dh-python (5.20230130) ...
Setting up python3-setuptools (66.1.1-1) ...
Setting up python3-all (3.11.2-1+b1) ...
Processing triggers for libc-bin (2.36-9) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
usrmerge is already the newest version (35).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: user script /srv/workspace/pbuilder/23446/tmp/hooks/A99_set_merged_usr starting
Re-configuring usrmerge...
I: user script /srv/workspace/pbuilder/23446/tmp/hooks/A99_set_merged_usr finished
hostname: Temporary failure in name resolution
I: Running cd /build/python-pangolearn-2022-07-09+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-pangolearn_2022-07-09+dfsg-2_source.changes
dpkg-buildpackage: info: source package python-pangolearn
dpkg-buildpackage: info: source version 2022-07-09+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:240: python3.11 setup.py clean
/usr/lib/python3/dist-packages/setuptools/dist.py:534: UserWarning: Normalizing '2022.07.09' to '2022.7.9'
warnings.warn(tmpl.format(**locals()))
running clean
removing '/build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build' (and everything under it)
'build/bdist.linux-arm64' does not exist -- can't clean it
'build/scripts-3.11' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --with python3 --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:240: python3.11 setup.py config
/usr/lib/python3/dist-packages/setuptools/dist.py:534: UserWarning: Normalizing '2022.07.09' to '2022.7.9'
warnings.warn(tmpl.format(**locals()))
running config
dh_auto_build -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py build
/usr/lib/python3/dist-packages/setuptools/dist.py:534: UserWarning: Normalizing '2022.07.09' to '2022.7.9'
warnings.warn(tmpl.format(**locals()))
running build
running build_py
creating /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN
copying pangoLEARN/__init__.py -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN
creating /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training
copying pangoLEARN/training/utils.py -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training
copying pangoLEARN/training/processOutputFile.py -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training
copying pangoLEARN/training/pangoLEARNRandomForest_v1.py -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training
copying pangoLEARN/training/pangoLEARNDecisionTree_v1.py -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training
copying pangoLEARN/training/get_lineage_positions.py -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training
copying pangoLEARN/training/getDecisionTreeRules.py -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training
copying pangoLEARN/training/downsample.py -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training
copying pangoLEARN/training/__init__.py -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training
creating /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/scripts
copying pangoLEARN/scripts/__init__.py -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/scripts
running egg_info
creating pangoLEARN.egg-info
writing pangoLEARN.egg-info/PKG-INFO
writing dependency_links to pangoLEARN.egg-info/dependency_links.txt
writing entry points to pangoLEARN.egg-info/entry_points.txt
writing top-level names to pangoLEARN.egg-info/top_level.txt
writing manifest file 'pangoLEARN.egg-info/SOURCES.txt'
reading manifest file 'pangoLEARN.egg-info/SOURCES.txt'
adding license file 'LICENSE'
writing manifest file 'pangoLEARN.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pangoLEARN.data' as data is deprecated, please list it in `packages`.
!!
############################
# Package would be ignored #
############################
Python recognizes 'pangoLEARN.data' as an importable package,
but it is not listed in the `packages` configuration of setuptools.
'pangoLEARN.data' has been automatically added to the distribution only
because it may contain data files, but this behavior is likely to change
in future versions of setuptools (and therefore is considered deprecated).
Please make sure that 'pangoLEARN.data' is included as a package by using
the `packages` configuration field or the proper discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" and "data files" on setuptools
documentation page.
!!
check.warn(importable)
creating /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/data
copying pangoLEARN/data/decisionTree_recall_report.csv -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/data
copying pangoLEARN/data/decision_tree_rules.zip -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/data
copying pangoLEARN/data/lineageTree.pb -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/data
copying pangoLEARN/data/lineage_recall_report.csv -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/data
copying pangoLEARN/data/lineages.downsample.csv -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/data
copying pangoLEARN/data/lineages.hash.csv -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/data
copying pangoLEARN/data/randomForest_recall_report.csv -> /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/data
dh_auto_test -O--buildsystem=pybuild
I: pybuild base:240: cd /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build; python3.11 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
dh_auto_install --destdir=debian/python3-pangolearn/ -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn
/usr/lib/python3/dist-packages/setuptools/dist.py:534: UserWarning: Normalizing '2022.07.09' to '2022.7.9'
warnings.warn(tmpl.format(**locals()))
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
running egg_info
writing pangoLEARN.egg-info/PKG-INFO
writing dependency_links to pangoLEARN.egg-info/dependency_links.txt
writing entry points to pangoLEARN.egg-info/entry_points.txt
writing top-level names to pangoLEARN.egg-info/top_level.txt
reading manifest file 'pangoLEARN.egg-info/SOURCES.txt'
adding license file 'LICENSE'
writing manifest file 'pangoLEARN.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pangoLEARN.data' as data is deprecated, please list it in `packages`.
!!
############################
# Package would be ignored #
############################
Python recognizes 'pangoLEARN.data' as an importable package,
but it is not listed in the `packages` configuration of setuptools.
'pangoLEARN.data' has been automatically added to the distribution only
because it may contain data files, but this behavior is likely to change
in future versions of setuptools (and therefore is considered deprecated).
Please make sure that 'pangoLEARN.data' is included as a package by using
the `packages` configuration field or the proper discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" and "data files" on setuptools
documentation page.
!!
check.warn(importable)
running install_lib
creating /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr
creating /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib
creating /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11
creating /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages
creating /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN
creating /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/__pycache__
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/__pycache__/__init__.cpython-311.pyc -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/__pycache__
creating /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/data
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/data/randomForest_recall_report.csv -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/data
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/data/lineages.hash.csv -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/data
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/data/lineages.downsample.csv -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/data
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/data/lineage_recall_report.csv -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/data
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/data/lineageTree.pb -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/data
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/data/decision_tree_rules.zip -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/data
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/data/decisionTree_recall_report.csv -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/data
creating /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/scripts
creating /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/scripts/__pycache__
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/scripts/__pycache__/__init__.cpython-311.pyc -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/scripts/__pycache__
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/scripts/__init__.py -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/scripts
creating /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training
creating /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training/__pycache__
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training/__pycache__/__init__.cpython-311.pyc -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training/__pycache__
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training/__init__.py -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training/downsample.py -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training/getDecisionTreeRules.py -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training/get_lineage_positions.py -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training/pangoLEARNDecisionTree_v1.py -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training/pangoLEARNRandomForest_v1.py -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training/processOutputFile.py -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/training/utils.py -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training
copying /build/python-pangolearn-2022-07-09+dfsg/.pybuild/cpython3_3.11_pangolearn/build/pangoLEARN/__init__.py -> /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN
byte-compiling /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/scripts/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training/downsample.py to downsample.cpython-311.pyc
byte-compiling /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training/getDecisionTreeRules.py to getDecisionTreeRules.cpython-311.pyc
byte-compiling /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training/get_lineage_positions.py to get_lineage_positions.cpython-311.pyc
byte-compiling /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training/pangoLEARNDecisionTree_v1.py to pangoLEARNDecisionTree_v1.cpython-311.pyc
byte-compiling /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training/pangoLEARNRandomForest_v1.py to pangoLEARNRandomForest_v1.cpython-311.pyc
byte-compiling /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training/processOutputFile.py to processOutputFile.cpython-311.pyc
byte-compiling /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/training/utils.py to utils.cpython-311.pyc
byte-compiling /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN/__init__.py to __init__.cpython-311.pyc
running install_egg_info
Copying pangoLEARN.egg-info to /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/lib/python3.11/dist-packages/pangoLEARN-2022.7.9.egg-info
Skipping SOURCES.txt
running install_scripts
Installing pangoLEARN script to /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/bin
debian/rules override_dh_install
make[1]: Entering directory '/build/python-pangolearn-2022-07-09+dfsg'
dh_install
rm -rf debian/python3-pangolearn/usr/bin
make[1]: Leaving directory '/build/python-pangolearn-2022-07-09+dfsg'
dh_installdocs -O--buildsystem=pybuild
dh_installchangelogs -O--buildsystem=pybuild
debian/rules override_dh_python3
make[1]: Entering directory '/build/python-pangolearn-2022-07-09+dfsg'
dh_python3
# Follow request of ftpmaster https://alioth-lists.debian.net/pipermail/debian-med-packaging/2022-October/104236.html
mkdir -p debian/python3-pangolearn/usr/share/python3-pangolearn
mv debian/python3-pangolearn/usr/lib/python3/dist-packages/pangoLEARN/data debian/python3-pangolearn/usr/share/python3-pangolearn
dh_link /usr/share/python3-pangolearn/data /usr/lib/python3/dist-packages/pangoLEARN/data
make[1]: Leaving directory '/build/python-pangolearn-2022-07-09+dfsg'
dh_installsystemduser -O--buildsystem=pybuild
dh_perl -O--buildsystem=pybuild
dh_link -O--buildsystem=pybuild
dh_strip_nondeterminism -O--buildsystem=pybuild
dh_compress -O--buildsystem=pybuild
dh_fixperms -O--buildsystem=pybuild
debian/rules execute_after_dh_fixperms
make[1]: Entering directory '/build/python-pangolearn-2022-07-09+dfsg'
chmod -v -x /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/share/python3-pangolearn/data/decisionTree_recall_report.csv
mode of '/build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/share/python3-pangolearn/data/decisionTree_recall_report.csv' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
chmod -v -x /build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/share/python3-pangolearn/data/randomForest_recall_report.csv
mode of '/build/python-pangolearn-2022-07-09+dfsg/debian/python3-pangolearn/usr/share/python3-pangolearn/data/randomForest_recall_report.csv' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
make[1]: Leaving directory '/build/python-pangolearn-2022-07-09+dfsg'
dh_missing -O--buildsystem=pybuild
dh_installdeb -O--buildsystem=pybuild
dh_gencontrol -O--buildsystem=pybuild
dh_md5sums -O--buildsystem=pybuild
dh_builddeb -O--buildsystem=pybuild
dpkg-deb: building package 'python3-pangolearn' in '../python3-pangolearn_2022-07-09+dfsg-2_all.deb'.
dpkg-genbuildinfo --build=binary -O../python-pangolearn_2022-07-09+dfsg-2_arm64.buildinfo
dpkg-genchanges --build=binary -O../python-pangolearn_2022-07-09+dfsg-2_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/23446/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/23446/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/23446 and its subdirectories
I: Current time: Sat Jun 8 10:01:25 +14 2024
I: pbuilder-time-stamp: 1717790485