I: pbuilder: network access will be disabled during build
I: Current time: Tue May 14 11:56:07 -12 2024
I: pbuilder-time-stamp: 1715730967
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [racon_1.5.0-3.dsc]
I: copying [./racon_1.5.0.orig.tar.gz]
I: copying [./racon_1.5.0-3.debian.tar.xz]
I: Extracting source
gpgv: Signature made Thu Sep 29 00:45:21 2022 -12
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./racon_1.5.0-3.dsc: no acceptable signature found
dpkg-source: info: extracting racon in racon-1.5.0
dpkg-source: info: unpacking racon_1.5.0.orig.tar.gz
dpkg-source: info: unpacking racon_1.5.0-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_packaged_libs.patch
dpkg-source: info: applying remove_buildpath
dpkg-source: info: applying py3
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/6193/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='arm64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8'
DISTRIBUTION='bookworm'
HOME='/var/lib/jenkins'
HOST_ARCH='arm64'
IFS='
'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='6193'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Qe9GO1di/pbuilderrc_PU9M --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Qe9GO1di/b1 --logfile b1/build.log racon_1.5.0-3.dsc'
SUDO_GID='117'
SUDO_UID='110'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
USERNAME='root'
_='/usr/bin/systemd-run'
http_proxy='http://192.168.101.16:3128'
I: uname -a
Linux codethink13-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 May 13 04:48 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/6193/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19616 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on cmake; however:
Package cmake is not installed.
pbuilder-satisfydepends-dummy depends on libgtest-dev; however:
Package libgtest-dev is not installed.
pbuilder-satisfydepends-dummy depends on libbioparser-dev; however:
Package libbioparser-dev is not installed.
pbuilder-satisfydepends-dummy depends on libcereal-dev; however:
Package libcereal-dev is not installed.
pbuilder-satisfydepends-dummy depends on libedlib-dev (>= 1.2.7-3~); however:
Package libedlib-dev is not installed.
pbuilder-satisfydepends-dummy depends on libspoa-dev; however:
Package libspoa-dev is not installed.
pbuilder-satisfydepends-dummy depends on libthread-pool-dev (>= 3.0.2); however:
Package libthread-pool-dev is not installed.
pbuilder-satisfydepends-dummy depends on rampler; however:
Package rampler is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcurl4{a} libdebhelper-perl{a} libedlib-dev{a} libedlib1{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgtest-dev{a} libicu72{a} libjsoncpp25{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libspoa-dev{a} libspoa7.0.0{a} libssh2-1{a} libsub-override-perl{a} libthread-pool-dev{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rampler{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget
0 packages upgraded, 61 newly installed, 0 to remove and 0 not upgraded.
Need to get 32.0 MB of archives. After unpacking 128 MB will be used.
Writing extended state information...
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Get: 3 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 4 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB]
Get: 5 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB]
Get: 6 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB]
Get: 7 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB]
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Get: 11 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB]
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Get: 24 http://deb.debian.org/debian bookworm/main arm64 libldap-2.5-0 arm64 2.5.13+dfsg-5 [171 kB]
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Get: 27 http://deb.debian.org/debian bookworm/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB]
Get: 28 http://deb.debian.org/debian bookworm/main arm64 libssh2-1 arm64 1.10.0-3+b1 [172 kB]
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Get: 30 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB]
Get: 31 http://deb.debian.org/debian bookworm/main arm64 libjsoncpp25 arm64 1.9.5-4 [72.3 kB]
Get: 32 http://deb.debian.org/debian bookworm/main arm64 librhash0 arm64 1.4.3-3 [131 kB]
Get: 33 http://deb.debian.org/debian bookworm/main arm64 libuv1 arm64 1.44.2-1 [133 kB]
Get: 34 http://deb.debian.org/debian bookworm/main arm64 cmake-data all 3.25.1-1 [2026 kB]
Get: 35 http://deb.debian.org/debian bookworm/main arm64 cmake arm64 3.25.1-1 [6806 kB]
Get: 36 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 37 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB]
Get: 38 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 39 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 40 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B]
Get: 41 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 42 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 43 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB]
Get: 44 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB]
Get: 45 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB]
Get: 46 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 47 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 48 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB]
Get: 49 http://deb.debian.org/debian bookworm/main arm64 googletest all 1.12.1-0.2 [506 kB]
Get: 50 http://deb.debian.org/debian bookworm/main arm64 libbiosoup-dev all 0.10.0-4 [7784 B]
Get: 51 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB]
Get: 52 http://deb.debian.org/debian bookworm/main arm64 libbioparser-dev all 3.0.15-3 [9032 B]
Get: 53 http://deb.debian.org/debian bookworm/main arm64 rapidjson-dev all 1.1.0+dfsg2-7.1 [97.7 kB]
Get: 54 http://deb.debian.org/debian bookworm/main arm64 libcereal-dev arm64 1.3.2+dfsg-4 [221 kB]
Get: 55 http://deb.debian.org/debian bookworm/main arm64 libedlib1 arm64 1.2.7-4+b1 [16.6 kB]
Get: 56 http://deb.debian.org/debian bookworm/main arm64 libedlib-dev arm64 1.2.7-4+b1 [21.6 kB]
Get: 57 http://deb.debian.org/debian bookworm/main arm64 libgtest-dev arm64 1.12.1-0.2 [231 kB]
Get: 58 http://deb.debian.org/debian bookworm/main arm64 libspoa7.0.0 arm64 4.0.8-1 [48.0 kB]
Get: 59 http://deb.debian.org/debian bookworm/main arm64 libspoa-dev arm64 4.0.8-1 [9344 B]
Get: 60 http://deb.debian.org/debian bookworm/main arm64 libthread-pool-dev arm64 4.0.0-1 [7236 B]
Get: 61 http://deb.debian.org/debian bookworm/main arm64 rampler arm64 2.1.1-1 [19.9 kB]
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debconf: delaying package configuration, since apt-utils is not installed
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(Reading database ... 19616 files and directories currently installed.)
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dpkg-buildpackage: info: source package racon
dpkg-buildpackage: info: source version 1.5.0-3
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dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
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cd test && ../obj-*/bin/racon_test
Running main() from ./googletest/src/gtest_main.cc
[==========] Running 15 tests from 2 test suites.
[----------] Global test environment set-up.
[----------] 5 tests from RaconInitializeTest
[ RUN ] RaconInitializeTest.PolisherTypeError
[ OK ] RaconInitializeTest.PolisherTypeError (8 ms)
[ RUN ] RaconInitializeTest.WindowLengthError
[ OK ] RaconInitializeTest.WindowLengthError (7 ms)
[ RUN ] RaconInitializeTest.SequencesPathExtensionError
[ OK ] RaconInitializeTest.SequencesPathExtensionError (9 ms)
[ RUN ] RaconInitializeTest.OverlapsPathExtensionError
[ OK ] RaconInitializeTest.OverlapsPathExtensionError (39 ms)
[ RUN ] RaconInitializeTest.TargetPathExtensionError
[ OK ] RaconInitializeTest.TargetPathExtensionError (30 ms)
[----------] 5 tests from RaconInitializeTest (94 ms total)
[----------] 10 tests from RaconPolishingTest
[ RUN ] RaconPolishingTest.ConsensusWithQualities
[racon::Polisher::initialize] loaded target sequences 0.001051 s
[racon::Polisher::initialize] loaded sequences 0.316594 s
[racon::Polisher::initialize] loaded overlaps 0.009060 s
[racon::Polisher::initialize] aligning overlaps [=> ] 0.239632 s
[racon::Polisher::initialize] aligning overlaps [==> ] 0.351615 s
[racon::Polisher::initialize] aligning overlaps [===> ] 0.443612 s
[racon::Polisher::initialize] aligning overlaps [====> ] 0.547594 s
[racon::Polisher::initialize] aligning overlaps [=====> ] 0.663598 s
[racon::Polisher::initialize] aligning overlaps [======> ] 0.771626 s
[racon::Polisher::initialize] aligning overlaps [=======> ] 1.015624 s
[racon::Polisher::initialize] aligning overlaps [========> ] 1.147615 s
[racon::Polisher::initialize] aligning overlaps [=========> ] 1.243486 s
[racon::Polisher::initialize] aligning overlaps [==========> ] 1.359644 s
[racon::Polisher::initialize] aligning overlaps [===========> ] 1.491607 s
[racon::Polisher::initialize] aligning overlaps [============> ] 1.603611 s
[racon::Polisher::initialize] aligning overlaps [=============> ] 1.710822 s
[racon::Polisher::initialize] aligning overlaps [==============> ] 1.763178 s
[racon::Polisher::initialize] aligning overlaps [===============> ] 1.871605 s
[racon::Polisher::initialize] aligning overlaps [================> ] 2.091619 s
[racon::Polisher::initialize] aligning overlaps [=================> ] 2.159608 s
[racon::Polisher::initialize] aligning overlaps [==================> ] 2.271632 s
[racon::Polisher::initialize] aligning overlaps [===================>] 2.391475 s
[racon::Polisher::initialize] aligning overlaps [====================] 2.470853 s
[racon::Polisher::initialize] transformed data into windows 0.004916 s
[racon::Polisher::polish] generating consensus [=> ] 0.435650 s
[racon::Polisher::polish] generating consensus [==> ] 0.735656 s
[racon::Polisher::polish] generating consensus [===> ] 1.071635 s
[racon::Polisher::polish] generating consensus [====> ] 1.423687 s
[racon::Polisher::polish] generating consensus [=====> ] 1.607653 s
[racon::Polisher::polish] generating consensus [======> ] 1.833717 s
[racon::Polisher::polish] generating consensus [=======> ] 2.013594 s
[racon::Polisher::polish] generating consensus [========> ] 2.139674 s
[racon::Polisher::polish] generating consensus [=========> ] 2.362402 s
[racon::Polisher::polish] generating consensus [==========> ] 2.779610 s
[racon::Polisher::polish] generating consensus [===========> ] 3.359623 s
[racon::Polisher::polish] generating consensus [============> ] 3.751641 s
[racon::Polisher::polish] generating consensus [=============> ] 4.555639 s
[racon::Polisher::polish] generating consensus [==============> ] 5.359633 s
[racon::Polisher::polish] generating consensus [===============> ] 6.051613 s
[racon::Polisher::polish] generating consensus [================> ] 6.519703 s
[racon::Polisher::polish] generating consensus [=================> ] 7.195627 s
[racon::Polisher::polish] generating consensus [==================> ] 7.583645 s
[racon::Polisher::polish] generating consensus [===================>] 7.955649 s
[racon::Polisher::polish] generating consensus [====================] 9.968969 s
[racon::Polisher::] total = 12.842266 s
[ OK ] RaconPolishingTest.ConsensusWithQualities (12876 ms)
[ RUN ] RaconPolishingTest.ConsensusWithoutQualities
[racon::Polisher::initialize] loaded target sequences 0.000954 s
[racon::Polisher::initialize] loaded sequences 0.154709 s
[racon::Polisher::initialize] loaded overlaps 0.000610 s
[racon::Polisher::initialize] aligning overlaps [=> ] 0.298782 s
[racon::Polisher::initialize] aligning overlaps [==> ] 0.398764 s
[racon::Polisher::initialize] aligning overlaps [===> ] 0.522765 s
[racon::Polisher::initialize] aligning overlaps [====> ] 0.598774 s
[racon::Polisher::initialize] aligning overlaps [=====> ] 0.702778 s
[racon::Polisher::initialize] aligning overlaps [======> ] 0.764482 s
[racon::Polisher::initialize] aligning overlaps [=======> ] 0.950775 s
[racon::Polisher::initialize] aligning overlaps [========> ] 1.086757 s
[racon::Polisher::initialize] aligning overlaps [=========> ] 1.189568 s
[racon::Polisher::initialize] aligning overlaps [==========> ] 1.257008 s
[racon::Polisher::initialize] aligning overlaps [===========> ] 1.350820 s
[racon::Polisher::initialize] aligning overlaps [============> ] 1.466768 s
[racon::Polisher::initialize] aligning overlaps [=============> ] 1.558761 s
[racon::Polisher::initialize] aligning overlaps [==============> ] 1.602764 s
[racon::Polisher::initialize] aligning overlaps [===============> ] 1.726769 s
[racon::Polisher::initialize] aligning overlaps [================> ] 1.850765 s
[racon::Polisher::initialize] aligning overlaps [=================> ] 1.946815 s
[racon::Polisher::initialize] aligning overlaps [==================> ] 2.091555 s
[racon::Polisher::initialize] aligning overlaps [===================>] 2.133306 s
[racon::Polisher::initialize] aligning overlaps [====================] 2.239054 s
[racon::Polisher::initialize] transformed data into windows 0.001059 s
[racon::Polisher::polish] generating consensus [=> ] 0.618492 s
[racon::Polisher::polish] generating consensus [==> ] 1.150524 s
[racon::Polisher::polish] generating consensus [===> ] 1.629922 s
[racon::Polisher::polish] generating consensus [====> ] 2.062488 s
[racon::Polisher::polish] generating consensus [=====> ] 2.298468 s
[racon::Polisher::polish] generating consensus [======> ] 2.514471 s
[racon::Polisher::polish] generating consensus [=======> ] 2.782441 s
[racon::Polisher::polish] generating consensus [========> ] 2.947068 s
[racon::Polisher::polish] generating consensus [=========> ] 3.378465 s
[racon::Polisher::polish] generating consensus [==========> ] 3.950440 s
[racon::Polisher::polish] generating consensus [===========> ] 4.786441 s
[racon::Polisher::polish] generating consensus [============> ] 5.602441 s
[racon::Polisher::polish] generating consensus [=============> ] 6.518453 s
[racon::Polisher::polish] generating consensus [==============> ] 7.598441 s
[racon::Polisher::polish] generating consensus [===============> ] 8.514429 s
[racon::Polisher::polish] generating consensus [================> ] 9.354534 s
[racon::Polisher::polish] generating consensus [=================> ] 10.258452 s
[racon::Polisher::polish] generating consensus [==================> ] 10.722448 s
[racon::Polisher::polish] generating consensus [===================>] 11.230447 s
[racon::Polisher::polish] generating consensus [====================] 13.970467 s
[racon::Polisher::] total = 16.447784 s
[ OK ] RaconPolishingTest.ConsensusWithoutQualities (16459 ms)
[ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments
[racon::Polisher::initialize] loaded target sequences 0.000955 s
[racon::Polisher::initialize] loaded sequences 0.245079 s
[racon::Polisher::initialize] loaded overlaps 0.087330 s
[racon::Polisher::initialize] aligning overlaps [=> ] 0.046811 s
[racon::Polisher::initialize] aligning overlaps [==> ] 0.046857 s
[racon::Polisher::initialize] aligning overlaps [===> ] 0.046876 s
[racon::Polisher::initialize] aligning overlaps [====> ] 0.046894 s
[racon::Polisher::initialize] aligning overlaps [=====> ] 0.046912 s
[racon::Polisher::initialize] aligning overlaps [======> ] 0.046929 s
[racon::Polisher::initialize] aligning overlaps [=======> ] 0.046947 s
[racon::Polisher::initialize] aligning overlaps [========> ] 0.046963 s
[racon::Polisher::initialize] aligning overlaps [=========> ] 0.046980 s
[racon::Polisher::initialize] aligning overlaps [==========> ] 0.046997 s
[racon::Polisher::initialize] aligning overlaps [===========> ] 0.047014 s
[racon::Polisher::initialize] aligning overlaps [============> ] 0.047030 s
[racon::Polisher::initialize] aligning overlaps [=============> ] 0.047047 s
[racon::Polisher::initialize] aligning overlaps [==============> ] 0.047064 s
[racon::Polisher::initialize] aligning overlaps [===============> ] 0.047081 s
[racon::Polisher::initialize] aligning overlaps [================> ] 0.047097 s
[racon::Polisher::initialize] aligning overlaps [=================> ] 0.047115 s
[racon::Polisher::initialize] aligning overlaps [==================> ] 0.047131 s
[racon::Polisher::initialize] aligning overlaps [===================>] 0.047538 s
[racon::Polisher::initialize] aligning overlaps [====================] 0.050013 s
[racon::Polisher::initialize] transformed data into windows 0.004798 s
[racon::Polisher::polish] generating consensus [=> ] 0.674900 s
[racon::Polisher::polish] generating consensus [==> ] 1.047064 s
[racon::Polisher::polish] generating consensus [===> ] 1.386865 s
[racon::Polisher::polish] generating consensus [====> ] 1.694864 s
[racon::Polisher::polish] generating consensus [=====> ] 1.885028 s
[racon::Polisher::polish] generating consensus [======> ] 2.082869 s
[racon::Polisher::polish] generating consensus [=======> ] 2.246826 s
[racon::Polisher::polish] generating consensus [========> ] 2.434353 s
[racon::Polisher::polish] generating consensus [=========> ] 2.662770 s
[racon::Polisher::polish] generating consensus [==========> ] 2.886168 s
[racon::Polisher::polish] generating consensus [===========> ] 3.398823 s
[racon::Polisher::polish] generating consensus [============> ] 4.050809 s
[racon::Polisher::polish] generating consensus [=============> ] 4.774809 s
[racon::Polisher::polish] generating consensus [==============> ] 5.632517 s
[racon::Polisher::polish] generating consensus [===============> ] 6.334821 s
[racon::Polisher::polish] generating consensus [================> ] 6.814917 s
[racon::Polisher::polish] generating consensus [=================> ] 7.538897 s
[racon::Polisher::polish] generating consensus [==================> ] 7.986821 s
[racon::Polisher::polish] generating consensus [===================>] 8.302827 s
[racon::Polisher::polish] generating consensus [====================] 9.971565 s
[racon::Polisher::] total = 10.463840 s
[ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (10471 ms)
[ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments
[racon::Polisher::initialize] loaded target sequences 0.000913 s
[racon::Polisher::initialize] loaded sequences 0.108681 s
[racon::Polisher::initialize] loaded overlaps 0.171209 s
[racon::Polisher::initialize] aligning overlaps [=> ] 0.020546 s
[racon::Polisher::initialize] aligning overlaps [==> ] 0.020600 s
[racon::Polisher::initialize] aligning overlaps [===> ] 0.020621 s
[racon::Polisher::initialize] aligning overlaps [====> ] 0.020638 s
[racon::Polisher::initialize] aligning overlaps [=====> ] 0.026074 s
[racon::Polisher::initialize] aligning overlaps [======> ] 0.026119 s
[racon::Polisher::initialize] aligning overlaps [=======> ] 0.026137 s
[racon::Polisher::initialize] aligning overlaps [========> ] 0.026155 s
[racon::Polisher::initialize] aligning overlaps [=========> ] 0.026173 s
[racon::Polisher::initialize] aligning overlaps [==========> ] 0.026192 s
[racon::Polisher::initialize] aligning overlaps [===========> ] 0.026210 s
[racon::Polisher::initialize] aligning overlaps [============> ] 0.026229 s
[racon::Polisher::initialize] aligning overlaps [=============> ] 0.026247 s
[racon::Polisher::initialize] aligning overlaps [==============> ] 0.026265 s
[racon::Polisher::initialize] aligning overlaps [===============> ] 0.026282 s
[racon::Polisher::initialize] aligning overlaps [================> ] 0.026300 s
[racon::Polisher::initialize] aligning overlaps [=================> ] 0.026318 s
[racon::Polisher::initialize] aligning overlaps [==================> ] 0.026335 s
[racon::Polisher::initialize] aligning overlaps [===================>] 0.026354 s
[racon::Polisher::initialize] aligning overlaps [====================] 0.026373 s
[racon::Polisher::initialize] transformed data into windows 0.001060 s
[racon::Polisher::polish] generating consensus [=> ] 0.526274 s
[racon::Polisher::polish] generating consensus [==> ] 1.002280 s
[racon::Polisher::polish] generating consensus [===> ] 1.506294 s
[racon::Polisher::polish] generating consensus [====> ] 1.974296 s
[racon::Polisher::polish] generating consensus [=====> ] 2.182276 s
[racon::Polisher::polish] generating consensus [======> ] 2.354282 s
[racon::Polisher::polish] generating consensus [=======> ] 2.566283 s
[racon::Polisher::polish] generating consensus [========> ] 2.874340 s
[racon::Polisher::polish] generating consensus [=========> ] 3.198264 s
[racon::Polisher::polish] generating consensus [==========> ] 3.866261 s
[racon::Polisher::polish] generating consensus [===========> ] 4.458912 s
[racon::Polisher::polish] generating consensus [============> ] 5.341895 s
[racon::Polisher::polish] generating consensus [=============> ] 6.682841 s
[racon::Polisher::polish] generating consensus [==============> ] 7.582271 s
[racon::Polisher::polish] generating consensus [===============> ] 8.270267 s
[racon::Polisher::polish] generating consensus [================> ] 8.828917 s
[racon::Polisher::polish] generating consensus [=================> ] 9.782276 s
[racon::Polisher::polish] generating consensus [==================> ] 10.266942 s
[racon::Polisher::polish] generating consensus [===================>] 10.690283 s
[racon::Polisher::polish] generating consensus [====================] 13.055961 s
[racon::Polisher::] total = 13.389607 s
[ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (13395 ms)
[ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow
[racon::Polisher::initialize] loaded target sequences 0.000957 s
[racon::Polisher::initialize] loaded sequences 0.261311 s
[racon::Polisher::initialize] loaded overlaps 0.000600 s
[racon::Polisher::initialize] aligning overlaps [=> ] 0.189260 s
[racon::Polisher::initialize] aligning overlaps [==> ] 0.292642 s
[racon::Polisher::initialize] aligning overlaps [===> ] 0.400636 s
[racon::Polisher::initialize] aligning overlaps [====> ] 0.500632 s
[racon::Polisher::initialize] aligning overlaps [=====> ] 0.588638 s
[racon::Polisher::initialize] aligning overlaps [======> ] 0.676637 s
[racon::Polisher::initialize] aligning overlaps [=======> ] 0.896636 s
[racon::Polisher::initialize] aligning overlaps [========> ] 1.005133 s
[racon::Polisher::initialize] aligning overlaps [=========> ] 1.072625 s
[racon::Polisher::initialize] aligning overlaps [==========> ] 1.140620 s
[racon::Polisher::initialize] aligning overlaps [===========> ] 1.244627 s
[racon::Polisher::initialize] aligning overlaps [============> ] 1.326578 s
[racon::Polisher::initialize] aligning overlaps [=============> ] 1.464636 s
[racon::Polisher::initialize] aligning overlaps [==============> ] 1.500636 s
[racon::Polisher::initialize] aligning overlaps [===============> ] 1.572656 s
[racon::Polisher::initialize] aligning overlaps [================> ] 1.836701 s
[racon::Polisher::initialize] aligning overlaps [=================> ] 1.876629 s
[racon::Polisher::initialize] aligning overlaps [==================> ] 1.956627 s
[racon::Polisher::initialize] aligning overlaps [===================>] 2.020416 s
[racon::Polisher::initialize] aligning overlaps [====================] 2.074250 s
[racon::Polisher::initialize] transformed data into windows 0.004188 s
[racon::Polisher::polish] generating consensus [=> ] 1.660026 s
[racon::Polisher::polish] generating consensus [==> ] 1.660090 s
[racon::Polisher::polish] generating consensus [===> ] 2.945743 s
[racon::Polisher::polish] generating consensus [====> ] 2.945863 s
[racon::Polisher::polish] generating consensus [=====> ] 3.318349 s
[racon::Polisher::polish] generating consensus [======> ] 3.318403 s
[racon::Polisher::polish] generating consensus [=======> ] 3.993945 s
[racon::Polisher::polish] generating consensus [========> ] 3.994042 s
[racon::Polisher::polish] generating consensus [=========> ] 4.558001 s
[racon::Polisher::polish] generating consensus [==========> ] 4.558056 s
[racon::Polisher::polish] generating consensus [===========> ] 6.341938 s
[racon::Polisher::polish] generating consensus [============> ] 6.509932 s
[racon::Polisher::polish] generating consensus [=============> ] 9.469350 s
[racon::Polisher::polish] generating consensus [==============> ] 9.469417 s
[racon::Polisher::polish] generating consensus [===============> ] 11.601939 s
[racon::Polisher::polish] generating consensus [================> ] 11.602068 s
[racon::Polisher::polish] generating consensus [=================> ] 13.473934 s
[racon::Polisher::polish] generating consensus [==================> ] 13.473995 s
[racon::Polisher::polish] generating consensus [===================>] 14.849929 s
[racon::Polisher::polish] generating consensus [====================] 16.828243 s
[racon::Polisher::] total = 19.229027 s
[ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (19256 ms)
[ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance
[racon::Polisher::initialize] loaded target sequences 0.000963 s
[racon::Polisher::initialize] loaded sequences 0.239475 s
[racon::Polisher::initialize] loaded overlaps 0.000589 s
[racon::Polisher::initialize] aligning overlaps [=> ] 0.209478 s
[racon::Polisher::initialize] aligning overlaps [==> ] 0.273980 s
[racon::Polisher::initialize] aligning overlaps [===> ] 0.405990 s
[racon::Polisher::initialize] aligning overlaps [====> ] 0.478005 s
[racon::Polisher::initialize] aligning overlaps [=====> ] 0.577345 s
[racon::Polisher::initialize] aligning overlaps [======> ] 0.633995 s
[racon::Polisher::initialize] aligning overlaps [=======> ] 0.802000 s
[racon::Polisher::initialize] aligning overlaps [========> ] 0.893994 s
[racon::Polisher::initialize] aligning overlaps [=========> ] 0.973988 s
[racon::Polisher::initialize] aligning overlaps [==========> ] 1.107320 s
[racon::Polisher::initialize] aligning overlaps [===========> ] 1.141638 s
[racon::Polisher::initialize] aligning overlaps [============> ] 1.297990 s
[racon::Polisher::initialize] aligning overlaps [=============> ] 1.476585 s
[racon::Polisher::initialize] aligning overlaps [==============> ] 1.522307 s
[racon::Polisher::initialize] aligning overlaps [===============> ] 1.677984 s
[racon::Polisher::initialize] aligning overlaps [================> ] 1.818487 s
[racon::Polisher::initialize] aligning overlaps [=================> ] 1.886826 s
[racon::Polisher::initialize] aligning overlaps [==================> ] 1.997994 s
[racon::Polisher::initialize] aligning overlaps [===================>] 2.137375 s
[racon::Polisher::initialize] aligning overlaps [====================] 2.246680 s
[racon::Polisher::initialize] transformed data into windows 0.022572 s
[racon::Polisher::polish] generating consensus [=> ] 0.501257 s
[racon::Polisher::polish] generating consensus [==> ] 0.820495 s
[racon::Polisher::polish] generating consensus [===> ] 1.122406 s
[racon::Polisher::polish] generating consensus [====> ] 1.368515 s
[racon::Polisher::polish] generating consensus [=====> ] 1.556647 s
[racon::Polisher::polish] generating consensus [======> ] 1.701768 s
[racon::Polisher::polish] generating consensus [=======> ] 1.878578 s
[racon::Polisher::polish] generating consensus [========> ] 2.132601 s
[racon::Polisher::polish] generating consensus [=========> ] 2.396467 s
[racon::Polisher::polish] generating consensus [==========> ] 2.724464 s
[racon::Polisher::polish] generating consensus [===========> ] 3.112476 s
[racon::Polisher::polish] generating consensus [============> ] 3.544548 s
[racon::Polisher::polish] generating consensus [=============> ] 4.300559 s
[racon::Polisher::polish] generating consensus [==============> ] 5.048470 s
[racon::Polisher::polish] generating consensus [===============> ] 5.688492 s
[racon::Polisher::polish] generating consensus [================> ] 6.108570 s
[racon::Polisher::polish] generating consensus [=================> ] 6.744499 s
[racon::Polisher::polish] generating consensus [==================> ] 7.080485 s
[racon::Polisher::polish] generating consensus [===================>] 7.444457 s
[racon::Polisher::polish] generating consensus [====================] 8.711623 s
[racon::Polisher::] total = 11.310288 s
[ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (11328 ms)
[ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities
[racon::Polisher::initialize] loaded target sequences 0.188421 s
[racon::Polisher::initialize] loaded sequences 0.088122 s
[racon::Polisher::initialize] loaded overlaps 0.030611 s
[racon::Polisher::initialize] aligning overlaps [=> ] 0.183194 s
[racon::Polisher::initialize] aligning overlaps [==> ] 0.359218 s
[racon::Polisher::initialize] aligning overlaps [===> ] 0.419201 s
[racon::Polisher::initialize] aligning overlaps [====> ] 0.499198 s
[racon::Polisher::initialize] aligning overlaps [=====> ] 0.595193 s
[racon::Polisher::initialize] aligning overlaps [======> ] 0.711205 s
[racon::Polisher::initialize] aligning overlaps [=======> ] 0.838600 s
[racon::Polisher::initialize] aligning overlaps [========> ] 0.946140 s
[racon::Polisher::initialize] aligning overlaps [=========> ] 1.095188 s
[racon::Polisher::initialize] aligning overlaps [==========> ] 1.223205 s
[racon::Polisher::initialize] aligning overlaps [===========> ] 1.339011 s
[racon::Polisher::initialize] aligning overlaps [============> ] 1.559197 s
[racon::Polisher::initialize] aligning overlaps [=============> ] 1.723184 s
[racon::Polisher::initialize] aligning overlaps [==============> ] 1.903206 s
[racon::Polisher::initialize] aligning overlaps [===============> ] 2.027195 s
[racon::Polisher::initialize] aligning overlaps [================> ] 2.187190 s
[racon::Polisher::initialize] aligning overlaps [=================> ] 2.307198 s
[racon::Polisher::initialize] aligning overlaps [==================> ] 2.359199 s
[racon::Polisher::initialize] aligning overlaps [===================>] 2.475189 s
[racon::Polisher::initialize] aligning overlaps [====================] 2.596952 s
[racon::Polisher::initialize] transformed data into windows 0.012288 s
[racon::Polisher::polish] generating consensus [=> ] 0.365093 s
[racon::Polisher::polish] generating consensus [==> ] 0.721046 s
[racon::Polisher::polish] generating consensus [===> ] 1.113046 s
[racon::Polisher::polish] generating consensus [====> ] 1.113467 s
[racon::Polisher::polish] generating consensus [=====> ] 1.325194 s
[racon::Polisher::polish] generating consensus [======> ] 1.485275 s
[racon::Polisher::polish] generating consensus [=======> ] 1.689242 s
[racon::Polisher::polish] generating consensus [========> ] 1.737343 s
[racon::Polisher::polish] generating consensus [=========> ] 2.220077 s
[racon::Polisher::polish] generating consensus [==========> ] 2.408968 s
[racon::Polisher::polish] generating consensus [===========> ] 2.569136 s
[racon::Polisher::polish] generating consensus [============> ] 2.641215 s
[racon::Polisher::polish] generating consensus [=============> ] 2.824975 s
[racon::Polisher::polish] generating consensus [==============> ] 2.825445 s
[racon::Polisher::polish] generating consensus [===============> ] 3.273089 s
[racon::Polisher::polish] generating consensus [================> ] 3.273484 s
[racon::Polisher::polish] generating consensus [=================> ] 4.113205 s
[racon::Polisher::polish] generating consensus [==================> ] 4.325144 s
[racon::Polisher::polish] generating consensus [===================>] 4.593771 s
[racon::Polisher::polish] generating consensus [====================] 4.703659 s
[racon::Polisher::] total = 7.622783 s
[ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (7628 ms)
[ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull
[racon::Polisher::initialize] loaded target sequences 0.111806 s
[racon::Polisher::initialize] loaded sequences 0.198588 s
[racon::Polisher::initialize] loaded overlaps 0.021724 s
[racon::Polisher::initialize] aligning overlaps [=> ] 2.544929 s
[racon::Polisher::initialize] aligning overlaps [==> ] 4.101603 s
[racon::Polisher::initialize] aligning overlaps [===> ] 5.623307 s
[racon::Polisher::initialize] aligning overlaps [====> ] 7.561609 s
[racon::Polisher::initialize] aligning overlaps [=====> ] 9.281655 s
[racon::Polisher::initialize] aligning overlaps [======> ] 10.773612 s
[racon::Polisher::initialize] aligning overlaps [=======> ] 12.539301 s
[racon::Polisher::initialize] aligning overlaps [========> ] 14.789598 s
[racon::Polisher::initialize] aligning overlaps [=========> ] 17.121605 s
[racon::Polisher::initialize] aligning overlaps [==========> ] 19.305608 s
[racon::Polisher::initialize] aligning overlaps [===========> ] 21.153602 s
[racon::Polisher::initialize] aligning overlaps [============> ] 23.453616 s
[racon::Polisher::initialize] aligning overlaps [=============> ] 26.033147 s
[racon::Polisher::initialize] aligning overlaps [==============> ] 28.273609 s
[racon::Polisher::initialize] aligning overlaps [===============> ] 30.749605 s
[racon::Polisher::initialize] aligning overlaps [================> ] 32.965611 s
[racon::Polisher::initialize] aligning overlaps [=================> ] 35.381604 s
[racon::Polisher::initialize] aligning overlaps [==================> ] 37.682714 s
[racon::Polisher::initialize] aligning overlaps [===================>] 40.410023 s
[racon::Polisher::initialize] aligning overlaps [====================] 42.260562 s
[racon::Polisher::initialize] transformed data into windows 0.338362 s
[racon::Polisher::polish] generating consensus [=> ] 15.138852 s
[racon::Polisher::polish] generating consensus [==> ] 25.606855 s
[racon::Polisher::polish] generating consensus [===> ] 36.904869 s
[racon::Polisher::polish] generating consensus [====> ] 47.030974 s
[racon::Polisher::polish] generating consensus [=====> ] 57.790873 s
[racon::Polisher::polish] generating consensus [======> ] 69.870865 s
[racon::Polisher::polish] generating consensus [=======> ] 82.910865 s
[racon::Polisher::polish] generating consensus [========> ] 92.154865 s
[racon::Polisher::polish] generating consensus [=========> ] 104.130853 s
[racon::Polisher::polish] generating consensus [==========> ] 119.178842 s
[racon::Polisher::polish] generating consensus [===========> ] 132.909556 s
[racon::Polisher::polish] generating consensus [============> ] 146.982855 s
[racon::Polisher::polish] generating consensus [=============> ] 159.222864 s
[racon::Polisher::polish] generating consensus [==============> ] 170.806864 s
[racon::Polisher::polish] generating consensus [===============> ] 185.058841 s
[racon::Polisher::polish] generating consensus [================> ] 194.251934 s
[racon::Polisher::polish] generating consensus [=================> ] 210.122867 s
[racon::Polisher::polish] generating consensus [==================> ] 223.486970 s
[racon::Polisher::polish] generating consensus [===================>] 235.330846 s
[racon::Polisher::polish] generating consensus [====================] 249.690158 s
[racon::Polisher::] total = 292.670400 s
[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (292675 ms)
[ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull
[racon::Polisher::initialize] loaded target sequences 0.166659 s
[racon::Polisher::initialize] loaded sequences 0.110723 s
[racon::Polisher::initialize] loaded overlaps 0.053873 s
[racon::Polisher::initialize] aligning overlaps [=> ] 2.547047 s
[racon::Polisher::initialize] aligning overlaps [==> ] 4.303049 s
[racon::Polisher::initialize] aligning overlaps [===> ] 5.811050 s
[racon::Polisher::initialize] aligning overlaps [====> ] 7.575052 s
[racon::Polisher::initialize] aligning overlaps [=====> ] 9.195292 s
[racon::Polisher::initialize] aligning overlaps [======> ] 10.295041 s
[racon::Polisher::initialize] aligning overlaps [=======> ] 11.843034 s
[racon::Polisher::initialize] aligning overlaps [========> ] 13.563046 s
[racon::Polisher::initialize] aligning overlaps [=========> ] 15.179079 s
[racon::Polisher::initialize] aligning overlaps [==========> ] 16.423049 s
[racon::Polisher::initialize] aligning overlaps [===========> ] 17.815045 s
[racon::Polisher::initialize] aligning overlaps [============> ] 19.567057 s
[racon::Polisher::initialize] aligning overlaps [=============> ] 21.403050 s
[racon::Polisher::initialize] aligning overlaps [==============> ] 22.991058 s
[racon::Polisher::initialize] aligning overlaps [===============> ] 24.583052 s
[racon::Polisher::initialize] aligning overlaps [================> ] 26.111085 s
[racon::Polisher::initialize] aligning overlaps [=================> ] 27.743049 s
[racon::Polisher::initialize] aligning overlaps [==================> ] 29.347052 s
[racon::Polisher::initialize] aligning overlaps [===================>] 30.807041 s
[racon::Polisher::initialize] aligning overlaps [====================] 32.379056 s
[racon::Polisher::initialize] transformed data into windows 0.164994 s
[racon::Polisher::polish] generating consensus [=> ] 13.878719 s
[racon::Polisher::polish] generating consensus [==> ] 22.599830 s
[racon::Polisher::polish] generating consensus [===> ] 32.007895 s
[racon::Polisher::polish] generating consensus [====> ] 39.695909 s
[racon::Polisher::polish] generating consensus [=====> ] 49.219938 s
[racon::Polisher::polish] generating consensus [======> ] 59.203802 s
[racon::Polisher::polish] generating consensus [=======> ] 70.299805 s
[racon::Polisher::polish] generating consensus [========> ] 77.871805 s
[racon::Polisher::polish] generating consensus [=========> ] 87.923799 s
[racon::Polisher::polish] generating consensus [==========> ] 98.599796 s
[racon::Polisher::polish] generating consensus [===========> ] 106.587912 s
[racon::Polisher::polish] generating consensus [============> ] 116.107901 s
[racon::Polisher::polish] generating consensus [=============> ] 123.143801 s
[racon::Polisher::polish] generating consensus [==============> ] 132.043808 s
[racon::Polisher::polish] generating consensus [===============> ] 140.179783 s
[racon::Polisher::polish] generating consensus [================> ] 144.463906 s
[racon::Polisher::polish] generating consensus [=================> ] 155.891786 s
[racon::Polisher::polish] generating consensus [==================> ] 165.359898 s
[racon::Polisher::polish] generating consensus [===================>] 173.955815 s
[racon::Polisher::polish] generating consensus [====================] 181.791899 s
[racon::Polisher::] total = 214.684499 s
[ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (214687 ms)
[ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap
[racon::Polisher::initialize] loaded target sequences 0.119422 s
[racon::Polisher::initialize] loaded sequences 0.116337 s
[racon::Polisher::initialize] loaded overlaps 0.035438 s
[racon::Polisher::initialize] aligning overlaps [=> ] 1.435836 s
[racon::Polisher::initialize] aligning overlaps [==> ] 2.431853 s
[racon::Polisher::initialize] aligning overlaps [===> ] 3.367844 s
[racon::Polisher::initialize] aligning overlaps [====> ] 4.707833 s
[racon::Polisher::initialize] aligning overlaps [=====> ] 5.855842 s
[racon::Polisher::initialize] aligning overlaps [======> ] 6.723847 s
[racon::Polisher::initialize] aligning overlaps [=======> ] 7.459822 s
[racon::Polisher::initialize] aligning overlaps [========> ] 8.779321 s
[racon::Polisher::initialize] aligning overlaps [=========> ] 10.322993 s
[racon::Polisher::initialize] aligning overlaps [==========> ] 11.435827 s
[racon::Polisher::initialize] aligning overlaps [===========> ] 12.271844 s
[racon::Polisher::initialize] aligning overlaps [============> ] 13.727833 s
[racon::Polisher::initialize] aligning overlaps [=============> ] 15.255836 s
[racon::Polisher::initialize] aligning overlaps [==============> ] 16.199845 s
[racon::Polisher::initialize] aligning overlaps [===============> ] 17.247862 s
[racon::Polisher::initialize] aligning overlaps [================> ] 18.495837 s
[racon::Polisher::initialize] aligning overlaps [=================> ] 20.035838 s
[racon::Polisher::initialize] aligning overlaps [==================> ] 21.703854 s
[racon::Polisher::initialize] aligning overlaps [===================>] 22.579815 s
[racon::Polisher::initialize] aligning overlaps [====================] 23.062690 s
[racon::Polisher::initialize] transformed data into windows 0.245290 s
[racon::Polisher::polish] generating consensus [=> ] 7.920362 s
[racon::Polisher::polish] generating consensus [==> ] 13.320364 s
[racon::Polisher::polish] generating consensus [===> ] 20.180355 s
[racon::Polisher::polish] generating consensus [====> ] 25.996467 s
[racon::Polisher::polish] generating consensus [=====> ] 31.768382 s
[racon::Polisher::polish] generating consensus [======> ] 38.556377 s
[racon::Polisher::polish] generating consensus [=======> ] 44.084375 s
[racon::Polisher::polish] generating consensus [========> ] 48.372391 s
[racon::Polisher::polish] generating consensus [=========> ] 53.488406 s
[racon::Polisher::polish] generating consensus [==========> ] 61.156328 s
[racon::Polisher::polish] generating consensus [===========> ] 67.776385 s
[racon::Polisher::polish] generating consensus [============> ] 73.984488 s
[racon::Polisher::polish] generating consensus [=============> ] 79.712369 s
[racon::Polisher::polish] generating consensus [==============> ] 86.444358 s
[racon::Polisher::polish] generating consensus [===============> ] 92.420349 s
[racon::Polisher::polish] generating consensus [================> ] 96.332460 s
[racon::Polisher::polish] generating consensus [=================> ] 103.768427 s
[racon::Polisher::polish] generating consensus [==================> ] 110.820485 s
[racon::Polisher::polish] generating consensus [===================>] 116.500363 s
[racon::Polisher::polish] generating consensus [====================] 121.272498 s
[racon::Polisher::] total = 144.877838 s
[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (144880 ms)
[----------] 10 tests from RaconPolishingTest (743661 ms total)
[----------] Global test environment tear-down
[==========] 15 tests from 2 test suites ran. (743762 ms total)
[ PASSED ] 15 tests.
make[1]: Leaving directory '/build/racon-1.5.0'
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=cmake
dh_prep -O--buildsystem=cmake
dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake
cd obj-aarch64-linux-gnu && make -j8 install DESTDIR=/build/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/racon-1.5.0/obj-aarch64-linux-gnu'
/usr/bin/cmake -S/build/racon-1.5.0 -B/build/racon-1.5.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/build/racon-1.5.0/obj-aarch64-linux-gnu'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/build/racon-1.5.0/obj-aarch64-linux-gnu'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /build/racon-1.5.0/debian/racon/usr/bin/racon
make[1]: Leaving directory '/build/racon-1.5.0/obj-aarch64-linux-gnu'
dh_install -O--buildsystem=cmake
dh_installdocs -O--buildsystem=cmake
dh_installchangelogs -O--buildsystem=cmake
dh_installexamples -O--buildsystem=cmake
dh_installman -O--buildsystem=cmake
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dh_lintian -O--buildsystem=cmake
dh_perl -O--buildsystem=cmake
dh_link -O--buildsystem=cmake
dh_strip_nondeterminism -O--buildsystem=cmake
dh_compress -O--buildsystem=cmake
dh_fixperms -O--buildsystem=cmake
dh_missing -O--buildsystem=cmake
dh_dwz -a -O--buildsystem=cmake
dh_strip -a -O--buildsystem=cmake
dh_makeshlibs -a -O--buildsystem=cmake
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dh_installdeb -O--buildsystem=cmake
dh_gencontrol -O--buildsystem=cmake
dh_md5sums -O--buildsystem=cmake
dh_builddeb -O--buildsystem=cmake
dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-3_arm64.deb'.
dpkg-deb: building package 'racon' in '../racon_1.5.0-3_arm64.deb'.
dpkg-genbuildinfo --build=binary -O../racon_1.5.0-3_arm64.buildinfo
dpkg-genchanges --build=binary -O../racon_1.5.0-3_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/6193 and its subdirectories
I: Current time: Tue May 14 12:11:31 -12 2024
I: pbuilder-time-stamp: 1715731891