I: pbuilder: network access will be disabled during build I: Current time: Fri May 24 09:55:41 -12 2024 I: pbuilder-time-stamp: 1716587741 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [seqan-raptor_2.0.0.0.git.fecfbca+ds-3.dsc] I: copying [./seqan-raptor_2.0.0.0.git.fecfbca+ds.orig.tar.xz] I: copying [./seqan-raptor_2.0.0.0.git.fecfbca+ds-3.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Nov 1 00:01:05 2022 -12 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./seqan-raptor_2.0.0.0.git.fecfbca+ds-3.dsc: no acceptable signature found dpkg-source: info: extracting seqan-raptor in seqan-raptor-2.0.0.0.git.fecfbca+ds dpkg-source: info: unpacking seqan-raptor_2.0.0.0.git.fecfbca+ds.orig.tar.xz dpkg-source: info: unpacking seqan-raptor_2.0.0.0.git.fecfbca+ds-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling dpkg-source: info: applying privacy dpkg-source: info: applying chopper_no_test dpkg-source: info: applying chopper_no_ccache dpkg-source: info: applying debian_seqan3 dpkg-source: info: applying debian_gtest dpkg-source: info: applying debian_xxhash I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/30827/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='30827' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.QmHtExzr/pbuilderrc_oj2P --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.QmHtExzr/b1 --logfile b1/build.log seqan-raptor_2.0.0.0.git.fecfbca+ds-3.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink15-arm64 4.15.0-209-generic #220-Ubuntu SMP Tue Mar 21 19:52:44 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 24 04:47 /bin -> usr/bin I: user script /srv/workspace/pbuilder/30827/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libseqan3-dev (>= 3.2.0+ds-5), libgtest-dev, libxxhash-dev, libcereal-dev, libsimde-dev, pkg-config, doxygen, texlive-font-utils, texlive-latex-base, texlive-latex-recommended, texlive-latex-extra, texlive-plain-generic, texlive-fonts-recommended, ghostscript dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libseqan3-dev (>= 3.2.0+ds-5); however: Package libseqan3-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libxxhash-dev; however: Package libxxhash-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on texlive-font-utils; however: Package texlive-font-utils is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-plain-generic; however: Package texlive-plain-generic is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} fonts-urw-base35{a} gettext{a} gettext-base{a} ghostscript{a} googletest{a} groff-base{a} intltool-debian{a} libapache-pom-java{a} libarchive-zip-perl{a} libarchive13{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libcereal-dev{a} libclang-cpp14{a} libclang1-14{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2{a} libcurl4{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontbox-java{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libglib2.0-0{a} libgraphite2-3{a} libgs-common{a} libgs10{a} libgs10-common{a} libgtest-dev{a} libharfbuzz0b{a} libice6{a} libicu72{a} libidn12{a} libijs-0.35{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libjsoncpp25{a} libkpathsea6{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libllvm14{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libopenjp2-7{a} libpaper-utils{a} libpaper1{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng16-16{a} libproc2-0{a} libpsl5{a} libptexenc1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan3-dev{a} libsimde-dev{a} libsm6{a} libssh2-1{a} libsub-override-perl{a} libsynctex2{a} libteckit0{a} libtexlua53-5{a} libtiff6{a} libtool{a} libuchardet0{a} libuv1{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6{a} libxxhash-dev{a} libz3-4{a} libzzip-0-13{a} m4{a} man-db{a} media-types{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} poppler-data{a} preview-latex-style{a} procps{a} python3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} rapidjson-dev{a} readline-common{a} sensible-utils{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-font-utils{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} texlive-plain-generic{a} ucf{a} x11-common{a} xdg-utils{a} xfonts-encodings{a} xfonts-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl dbus default-jre dvisvgm fonts-droid-fallback libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libspreadsheet-parseexcel-perl libx11-protocol-perl lmodern lynx ps2eps psmisc publicsuffix ruby shared-mime-info tex-gyre tipa tk wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 158 newly installed, 0 to remove and 0 not upgraded. Need to get 235 MB of archives. After unpacking 872 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 poppler-data all 0.4.12-1 [1601 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-minimal arm64 3.11.2-6 [806 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 python3.11-minimal arm64 3.11.2-6 [1858 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 python3-minimal arm64 3.11.2-1+b1 [26.3 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 media-types all 10.0.0 [26.1 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 readline-common all 8.2-1.3 [69.0 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 libreadline8 arm64 8.2-1.3 [155 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-stdlib arm64 3.11.2-6 [1747 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 python3.11 arm64 3.11.2-6 [572 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 libpython3-stdlib arm64 3.11.2-1+b1 [9296 B] Get: 12 http://deb.debian.org/debian bookworm/main arm64 python3 arm64 3.11.2-1+b1 [26.3 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 libproc2-0 arm64 2:4.0.2-3 [60.1 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 procps arm64 2:4.0.2-3 [698 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 23 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 32 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.1+b3 [619 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 libarchive13 arm64 3.6.2-1 [316 kB] Get: 34 http://deb.debian.org/debian bookworm/main arm64 libbrotli1 arm64 1.0.9-2+b6 [269 kB] Get: 35 http://deb.debian.org/debian bookworm/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg-10 [20.8 kB] Get: 36 http://deb.debian.org/debian bookworm/main arm64 libsasl2-2 arm64 2.1.28+dfsg-10 [58.0 kB] Get: 37 http://deb.debian.org/debian bookworm/main arm64 libldap-2.5-0 arm64 2.5.13+dfsg-5 [171 kB] Get: 38 http://deb.debian.org/debian bookworm/main arm64 libnghttp2-14 arm64 1.52.0-1 [67.9 kB] Get: 39 http://deb.debian.org/debian bookworm/main arm64 libpsl5 arm64 0.21.2-1 [58.6 kB] Get: 40 http://deb.debian.org/debian bookworm/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 41 http://deb.debian.org/debian bookworm/main arm64 libssh2-1 arm64 1.10.0-3+b1 [172 kB] Get: 42 http://deb.debian.org/debian bookworm/main arm64 libcurl4 arm64 7.88.1-8 [361 kB] Get: 43 http://deb.debian.org/debian bookworm/main arm64 libjsoncpp25 arm64 1.9.5-4 [72.3 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 librhash0 arm64 1.4.3-3 [131 kB] Get: 45 http://deb.debian.org/debian bookworm/main arm64 libuv1 arm64 1.44.2-1 [133 kB] Get: 46 http://deb.debian.org/debian bookworm/main arm64 cmake-data all 3.25.1-1 [2026 kB] Get: 47 http://deb.debian.org/debian bookworm/main arm64 cmake arm64 3.25.1-1 [6806 kB] Get: 48 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 49 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 50 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 51 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 52 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 53 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 54 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 55 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 56 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 57 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 58 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 61 http://deb.debian.org/debian bookworm/main arm64 libbsd0 arm64 0.11.7-2 [115 kB] Get: 62 http://deb.debian.org/debian bookworm/main arm64 libedit2 arm64 3.1-20221030-2 [88.1 kB] Get: 63 http://deb.debian.org/debian bookworm/main arm64 libz3-4 arm64 4.8.12-3.1 [6282 kB] Get: 64 http://deb.debian.org/debian bookworm/main arm64 libllvm14 arm64 1:14.0.6-12 [19.3 MB] Get: 65 http://deb.debian.org/debian bookworm/main arm64 libclang-cpp14 arm64 1:14.0.6-12 [9866 kB] Get: 66 http://deb.debian.org/debian bookworm/main arm64 libclang1-14 arm64 1:14.0.6-12 [5465 kB] Get: 67 http://deb.debian.org/debian bookworm/main arm64 doxygen arm64 1.9.4-4 [4216 kB] Get: 68 http://deb.debian.org/debian bookworm/main arm64 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 69 http://deb.debian.org/debian bookworm/main arm64 libfontenc1 arm64 1:1.1.4-1 [23.6 kB] Get: 70 http://deb.debian.org/debian bookworm/main arm64 libpng16-16 arm64 1.6.39-2 [269 kB] Get: 71 http://deb.debian.org/debian bookworm/main arm64 libfreetype6 arm64 2.12.1+dfsg-4 [369 kB] Get: 72 http://deb.debian.org/debian bookworm/main arm64 x11-common all 1:7.7+23 [252 kB] Get: 73 http://deb.debian.org/debian bookworm/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 74 http://deb.debian.org/debian bookworm/main arm64 xfonts-utils arm64 1:7.7+6 [85.6 kB] Get: 75 http://deb.debian.org/debian bookworm/main arm64 fonts-urw-base35 all 20200910-7 [10.8 MB] Get: 76 http://deb.debian.org/debian bookworm/main arm64 fontconfig-config arm64 2.14.1-4 [315 kB] Get: 77 http://deb.debian.org/debian bookworm/main arm64 fonts-lmodern all 2.005-1 [4540 kB] Get: 78 http://deb.debian.org/debian bookworm/main arm64 libgs-common all 10.0.0~dfsg-11 [148 kB] Get: 79 http://deb.debian.org/debian bookworm/main arm64 libgs10-common all 10.0.0~dfsg-11 [586 kB] Get: 80 http://deb.debian.org/debian bookworm/main arm64 libavahi-common-data arm64 0.8-9 [107 kB] Get: 81 http://deb.debian.org/debian bookworm/main arm64 libavahi-common3 arm64 0.8-9 [40.3 kB] Get: 82 http://deb.debian.org/debian bookworm/main arm64 libdbus-1-3 arm64 1.14.6-1 [191 kB] Get: 83 http://deb.debian.org/debian bookworm/main arm64 libavahi-client3 arm64 0.8-9 [43.7 kB] Get: 84 http://deb.debian.org/debian bookworm/main arm64 libcups2 arm64 2.4.2-3 [228 kB] Get: 85 http://deb.debian.org/debian bookworm/main arm64 libfontconfig1 arm64 2.14.1-4 [381 kB] Get: 86 http://deb.debian.org/debian bookworm/main arm64 libidn12 arm64 1.41-1 [82.8 kB] Get: 87 http://deb.debian.org/debian bookworm/main arm64 libijs-0.35 arm64 0.35-15 [15.8 kB] Get: 88 http://deb.debian.org/debian bookworm/main arm64 libjbig2dec0 arm64 0.19-3 [62.8 kB] Get: 89 http://deb.debian.org/debian bookworm/main arm64 libjpeg62-turbo arm64 1:2.1.5-2 [171 kB] Get: 90 http://deb.debian.org/debian bookworm/main arm64 liblcms2-2 arm64 2.14-2 [143 kB] Get: 91 http://deb.debian.org/debian bookworm/main arm64 libopenjp2-7 arm64 2.5.0-1+b1 [176 kB] Get: 92 http://deb.debian.org/debian bookworm/main arm64 libpaper1 arm64 1.1.29 [12.6 kB] Get: 93 http://deb.debian.org/debian bookworm/main arm64 libdeflate0 arm64 1.14-1 [54.3 kB] Get: 94 http://deb.debian.org/debian bookworm/main arm64 libjbig0 arm64 2.1-6.1 [30.0 kB] Get: 95 http://deb.debian.org/debian bookworm/main arm64 liblerc4 arm64 4.0.0+ds-2 [138 kB] Get: 96 http://deb.debian.org/debian bookworm/main arm64 libwebp7 arm64 1.2.4-0.1 [259 kB] Get: 97 http://deb.debian.org/debian bookworm/main arm64 libtiff6 arm64 4.5.0-5 [300 kB] Get: 98 http://deb.debian.org/debian bookworm/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get: 99 http://deb.debian.org/debian bookworm/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 100 http://deb.debian.org/debian bookworm/main arm64 libxcb1 arm64 1.15-1 [143 kB] Get: 101 http://deb.debian.org/debian bookworm/main arm64 libx11-data all 2:1.8.4-2 [292 kB] Get: 102 http://deb.debian.org/debian bookworm/main arm64 libx11-6 arm64 2:1.8.4-2 [736 kB] Get: 103 http://deb.debian.org/debian bookworm/main arm64 libice6 arm64 2:1.0.10-1 [55.6 kB] Get: 104 http://deb.debian.org/debian bookworm/main arm64 libsm6 arm64 2:1.2.3-1 [34.0 kB] Get: 105 http://deb.debian.org/debian bookworm/main arm64 libxt6 arm64 1:1.2.1-1.1 [172 kB] Get: 106 http://deb.debian.org/debian bookworm/main arm64 libgs10 arm64 10.0.0~dfsg-11 [2252 kB] Get: 107 http://deb.debian.org/debian bookworm/main arm64 ghostscript arm64 10.0.0~dfsg-11 [56.7 kB] Get: 108 http://deb.debian.org/debian bookworm/main arm64 googletest all 1.12.1-0.2 [506 kB] Get: 109 http://deb.debian.org/debian bookworm/main arm64 libapache-pom-java all 29-2 [5276 B] Get: 110 http://deb.debian.org/debian bookworm/main arm64 libbz2-dev arm64 1.0.8-5+b1 [31.5 kB] Get: 111 http://deb.debian.org/debian bookworm/main arm64 libpixman-1-0 arm64 0.42.2-1 [470 kB] Get: 112 http://deb.debian.org/debian bookworm/main arm64 libxcb-render0 arm64 1.15-1 [115 kB] Get: 113 http://deb.debian.org/debian bookworm/main arm64 libxcb-shm0 arm64 1.15-1 [106 kB] Get: 114 http://deb.debian.org/debian bookworm/main arm64 libxext6 arm64 2:1.3.4-1+b1 [51.7 kB] Get: 115 http://deb.debian.org/debian bookworm/main arm64 libxrender1 arm64 1:0.9.10-1.1 [32.0 kB] Get: 116 http://deb.debian.org/debian bookworm/main arm64 libcairo2 arm64 1.16.0-7 [527 kB] Get: 117 http://deb.debian.org/debian bookworm/main arm64 rapidjson-dev all 1.1.0+dfsg2-7.1 [97.7 kB] Get: 118 http://deb.debian.org/debian bookworm/main arm64 libcereal-dev arm64 1.3.2+dfsg-4 [221 kB] Get: 119 http://deb.debian.org/debian bookworm/main arm64 libcommons-parent-java all 56-1 [10.8 kB] Get: 120 http://deb.debian.org/debian bookworm/main arm64 libcommons-logging-java all 1.2-3 [62.4 kB] Get: 121 http://deb.debian.org/debian bookworm/main arm64 libfontbox-java all 1:1.8.16-2 [211 kB] Get: 122 http://deb.debian.org/debian bookworm/main arm64 libglib2.0-0 arm64 2.74.6-2 [1310 kB] Get: 123 http://deb.debian.org/debian bookworm/main arm64 libgraphite2-3 arm64 1.3.14-1 [75.6 kB] Get: 124 http://deb.debian.org/debian bookworm/main arm64 libgtest-dev arm64 1.12.1-0.2 [231 kB] Get: 125 http://deb.debian.org/debian bookworm/main arm64 libharfbuzz0b arm64 6.0.0+dfsg-3 [1914 kB] Get: 126 http://deb.debian.org/debian bookworm/main arm64 libkpathsea6 arm64 2022.20220321.62855-5 [148 kB] Get: 127 http://deb.debian.org/debian bookworm/main arm64 libpaper-utils arm64 1.1.29 [8776 B] Get: 128 http://deb.debian.org/debian bookworm/main arm64 libpdfbox-java all 1:1.8.16-2 [5205 kB] Get: 129 http://deb.debian.org/debian bookworm/main arm64 libpkgconf3 arm64 1.8.1-1 [35.3 kB] Get: 130 http://deb.debian.org/debian bookworm/main arm64 libptexenc1 arm64 2022.20220321.62855-5 [42.7 kB] Get: 131 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB] Get: 132 http://deb.debian.org/debian bookworm/main arm64 libseqan3-dev all 3.2.0+ds-6 [752 kB] Get: 133 http://deb.debian.org/debian bookworm/main arm64 libsimde-dev all 0.7.4~rc2-2 [377 kB] Get: 134 http://deb.debian.org/debian bookworm/main arm64 libsynctex2 arm64 2022.20220321.62855-5 [57.0 kB] Get: 135 http://deb.debian.org/debian bookworm/main arm64 libteckit0 arm64 2.5.11+ds1-1+b1 [299 kB] Get: 136 http://deb.debian.org/debian bookworm/main arm64 libtexlua53-5 arm64 2022.20220321.62855-5 [102 kB] Get: 137 http://deb.debian.org/debian bookworm/main arm64 libxmu6 arm64 2:1.1.3-3 [57.2 kB] Get: 138 http://deb.debian.org/debian bookworm/main arm64 libxpm4 arm64 1:3.5.12-1.1 [45.2 kB] Get: 139 http://deb.debian.org/debian bookworm/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] Get: 140 http://deb.debian.org/debian bookworm/main arm64 libxi6 arm64 2:1.8-1+b1 [82.3 kB] Get: 141 http://deb.debian.org/debian bookworm/main arm64 libxxhash-dev arm64 0.8.1-1 [66.6 kB] Get: 142 http://deb.debian.org/debian bookworm/main arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [58.3 kB] Get: 143 http://deb.debian.org/debian bookworm/main arm64 pkgconf-bin arm64 1.8.1-1 [28.9 kB] Get: 144 http://deb.debian.org/debian bookworm/main arm64 pkgconf arm64 1.8.1-1 [25.9 kB] Get: 145 http://deb.debian.org/debian bookworm/main arm64 pkg-config arm64 1.8.1-1 [13.7 kB] Get: 146 http://deb.debian.org/debian bookworm/main arm64 tex-common all 6.18 [32.5 kB] Get: 147 http://deb.debian.org/debian bookworm/main arm64 preview-latex-style all 12.2-1 [201 kB] Get: 148 http://deb.debian.org/debian bookworm/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get: 149 http://deb.debian.org/debian bookworm/main arm64 texlive-binaries arm64 2022.20220321.62855-5 [7570 kB] Get: 150 http://deb.debian.org/debian bookworm/main arm64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 151 http://deb.debian.org/debian bookworm/main arm64 texlive-base all 2022.20230122-3 [21.9 MB] Get: 152 http://deb.debian.org/debian bookworm/main arm64 texlive-font-utils all 2022.20230122-3 [4130 kB] Get: 153 http://deb.debian.org/debian bookworm/main arm64 texlive-fonts-recommended all 2022.20230122-3 [4988 kB] Get: 154 http://deb.debian.org/debian bookworm/main arm64 texlive-latex-base all 2022.20230122-3 [1182 kB] Get: 155 http://deb.debian.org/debian bookworm/main arm64 texlive-latex-recommended all 2022.20230122-3 [8880 kB] Get: 156 http://deb.debian.org/debian bookworm/main arm64 texlive-pictures all 2022.20230122-3 [15.8 MB] Get: 157 http://deb.debian.org/debian bookworm/main arm64 texlive-latex-extra all 2022.20230122-3 [19.2 MB] Get: 158 http://deb.debian.org/debian bookworm/main arm64 texlive-plain-generic all 2022.20230122-3 [28.9 MB] Fetched 235 MB in 6s (40.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package poppler-data. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../poppler-data_0.4.12-1_all.deb ... Unpacking poppler-data (0.4.12-1) ... Selecting previously unselected package libpython3.11-minimal:arm64. Preparing to unpack .../libpython3.11-minimal_3.11.2-6_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.2-6) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.5.0-1_arm64.deb ... Unpacking libexpat1:arm64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_arm64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:arm64 (3.11.2-6) ... Setting up libexpat1:arm64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20466 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_arm64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../3-libreadline8_8.2-1.3_arm64.deb ... Unpacking libreadline8:arm64 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:arm64. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_arm64.deb ... Unpacking libpython3.11-stdlib:arm64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_arm64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20900 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_arm64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../001-libproc2-0_2%3a4.0.2-3_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.2-3_arm64.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../005-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../008-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../011-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package ucf. Preparing to unpack .../013-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../015-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../016-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../017-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../018-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../019-libicu72_72.1-3_arm64.deb ... Unpacking libicu72:arm64 (72.1-3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../020-libxml2_2.9.14+dfsg-1.1+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.1+b3) ... Selecting previously unselected package libarchive13:arm64. Preparing to unpack .../021-libarchive13_3.6.2-1_arm64.deb ... Unpacking libarchive13:arm64 (3.6.2-1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../022-libbrotli1_1.0.9-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.0.9-2+b6) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../023-libsasl2-modules-db_2.1.28+dfsg-10_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../024-libsasl2-2_2.1.28+dfsg-10_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:arm64. Preparing to unpack .../025-libldap-2.5-0_2.5.13+dfsg-5_arm64.deb ... Unpacking libldap-2.5-0:arm64 (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../026-libnghttp2-14_1.52.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.52.0-1) ... Selecting previously unselected package libpsl5:arm64. Preparing to unpack .../027-libpsl5_0.21.2-1_arm64.deb ... Unpacking libpsl5:arm64 (0.21.2-1) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../028-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:arm64. Preparing to unpack .../029-libssh2-1_1.10.0-3+b1_arm64.deb ... Unpacking libssh2-1:arm64 (1.10.0-3+b1) ... Selecting previously unselected package libcurl4:arm64. Preparing to unpack .../030-libcurl4_7.88.1-8_arm64.deb ... Unpacking libcurl4:arm64 (7.88.1-8) ... Selecting previously unselected package libjsoncpp25:arm64. Preparing to unpack .../031-libjsoncpp25_1.9.5-4_arm64.deb ... Unpacking libjsoncpp25:arm64 (1.9.5-4) ... Selecting previously unselected package librhash0:arm64. Preparing to unpack .../032-librhash0_1.4.3-3_arm64.deb ... Unpacking librhash0:arm64 (1.4.3-3) ... Selecting previously unselected package libuv1:arm64. Preparing to unpack .../033-libuv1_1.44.2-1_arm64.deb ... Unpacking libuv1:arm64 (1.44.2-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../034-cmake-data_3.25.1-1_all.deb ... Unpacking cmake-data (3.25.1-1) ... Selecting previously unselected package cmake. Preparing to unpack .../035-cmake_3.25.1-1_arm64.deb ... Unpacking cmake (3.25.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../036-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../037-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../038-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../039-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../040-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../041-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../042-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../043-libelf1_0.188-2.1_arm64.deb ... Unpacking libelf1:arm64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../044-dwz_0.15-1_arm64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package gettext. Preparing to unpack .../045-gettext_0.21-12_arm64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../046-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../047-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../048-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../049-libbsd0_0.11.7-2_arm64.deb ... Unpacking libbsd0:arm64 (0.11.7-2) ... Selecting previously unselected package libedit2:arm64. Preparing to unpack .../050-libedit2_3.1-20221030-2_arm64.deb ... Unpacking libedit2:arm64 (3.1-20221030-2) ... Selecting previously unselected package libz3-4:arm64. Preparing to unpack .../051-libz3-4_4.8.12-3.1_arm64.deb ... Unpacking libz3-4:arm64 (4.8.12-3.1) ... Selecting previously unselected package libllvm14:arm64. Preparing to unpack .../052-libllvm14_1%3a14.0.6-12_arm64.deb ... Unpacking libllvm14:arm64 (1:14.0.6-12) ... Selecting previously unselected package libclang-cpp14. Preparing to unpack .../053-libclang-cpp14_1%3a14.0.6-12_arm64.deb ... Unpacking libclang-cpp14 (1:14.0.6-12) ... Selecting previously unselected package libclang1-14. Preparing to unpack .../054-libclang1-14_1%3a14.0.6-12_arm64.deb ... Unpacking libclang1-14 (1:14.0.6-12) ... Selecting previously unselected package doxygen. Preparing to unpack .../055-doxygen_1.9.4-4_arm64.deb ... Unpacking doxygen (1.9.4-4) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../056-fonts-dejavu-core_2.37-6_all.deb ... Unpacking fonts-dejavu-core (2.37-6) ... Selecting previously unselected package libfontenc1:arm64. Preparing to unpack .../057-libfontenc1_1%3a1.1.4-1_arm64.deb ... Unpacking libfontenc1:arm64 (1:1.1.4-1) ... Selecting previously unselected package libpng16-16:arm64. Preparing to unpack .../058-libpng16-16_1.6.39-2_arm64.deb ... Unpacking libpng16-16:arm64 (1.6.39-2) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../059-libfreetype6_2.12.1+dfsg-4_arm64.deb ... Unpacking libfreetype6:arm64 (2.12.1+dfsg-4) ... Selecting previously unselected package x11-common. Preparing to unpack .../060-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../061-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../062-xfonts-utils_1%3a7.7+6_arm64.deb ... Unpacking xfonts-utils (1:7.7+6) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../063-fonts-urw-base35_20200910-7_all.deb ... Unpacking fonts-urw-base35 (20200910-7) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../064-fontconfig-config_2.14.1-4_arm64.deb ... Unpacking fontconfig-config (2.14.1-4) ... Selecting previously unselected package fonts-lmodern. Preparing to unpack .../065-fonts-lmodern_2.005-1_all.deb ... Unpacking fonts-lmodern (2.005-1) ... Selecting previously unselected package libgs-common. Preparing to unpack .../066-libgs-common_10.0.0~dfsg-11_all.deb ... Unpacking libgs-common (10.0.0~dfsg-11) ... Selecting previously unselected package libgs10-common. Preparing to unpack .../067-libgs10-common_10.0.0~dfsg-11_all.deb ... Unpacking libgs10-common (10.0.0~dfsg-11) ... Selecting previously unselected package libavahi-common-data:arm64. Preparing to unpack .../068-libavahi-common-data_0.8-9_arm64.deb ... Unpacking libavahi-common-data:arm64 (0.8-9) ... Selecting previously unselected package libavahi-common3:arm64. Preparing to unpack .../069-libavahi-common3_0.8-9_arm64.deb ... Unpacking libavahi-common3:arm64 (0.8-9) ... Selecting previously unselected package libdbus-1-3:arm64. Preparing to unpack .../070-libdbus-1-3_1.14.6-1_arm64.deb ... Unpacking libdbus-1-3:arm64 (1.14.6-1) ... Selecting previously unselected package libavahi-client3:arm64. Preparing to unpack .../071-libavahi-client3_0.8-9_arm64.deb ... Unpacking libavahi-client3:arm64 (0.8-9) ... Selecting previously unselected package libcups2:arm64. Preparing to unpack .../072-libcups2_2.4.2-3_arm64.deb ... Unpacking libcups2:arm64 (2.4.2-3) ... Selecting previously unselected package libfontconfig1:arm64. Preparing to unpack .../073-libfontconfig1_2.14.1-4_arm64.deb ... Unpacking libfontconfig1:arm64 (2.14.1-4) ... Selecting previously unselected package libidn12:arm64. Preparing to unpack .../074-libidn12_1.41-1_arm64.deb ... Unpacking libidn12:arm64 (1.41-1) ... Selecting previously unselected package libijs-0.35:arm64. Preparing to unpack .../075-libijs-0.35_0.35-15_arm64.deb ... 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Setting up pkgconf:arm64 (1.8.1-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libptexenc1:arm64 (2022.20220321.62855-5) ... Setting up libfreetype6:arm64 (2.12.1+dfsg-4) ... Setting up pkg-config:arm64 (1.8.1-1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libllvm14:arm64 (1:14.0.6-12) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libcurl4:arm64 (7.88.1-8) ... Setting up libx11-6:arm64 (2:1.8.4-2) ... Setting up libharfbuzz0b:arm64 (6.0.0+dfsg-3) ... Setting up libfontconfig1:arm64 (2.14.1-4) ... Setting up libsm6:arm64 (2:1.2.3-1) ... Setting up libavahi-client3:arm64 (0.8-9) ... Setting up libpaper1:arm64 (1.1.29) ... Creating config file /etc/papersize with new version Setting up libxpm4:arm64 (1:3.5.12-1.1) ... Setting up libxrender1:arm64 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:arm64 (3.11.2-6) ... Setting up libseqan3-dev (3.2.0+ds-6) ... Setting up libxext6:arm64 (2:1.3.4-1+b1) ... Setting up libclang1-14 (1:14.0.6-12) ... Setting up libpaper-utils (1.1.29) ... Setting up xfonts-utils (1:7.7+6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:arm64 (1.16.0-7) ... Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libclang-cpp14 (1:14.0.6-12) ... Setting up libxt6:arm64 (1:1.2.1-1.1) ... Setting up libcups2:arm64 (2.4.2-3) ... Setting up cmake (3.25.1-1) ... Setting up libpython3-stdlib:arm64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libxmu6:arm64 (2:1.1.3-3) ... Setting up libxi6:arm64 (2:1.8-1+b1) ... Setting up preview-latex-style (12.2-1) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up libxaw7:arm64 (2:1.0.14-1) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up doxygen (1.9.4-4) ... Setting up texlive-binaries (2022.20220321.62855-5) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2022.20230122-3) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up libgs10-common (10.0.0~dfsg-11) ... Setting up texlive-plain-generic (2022.20230122-3) ... Setting up texlive-font-utils (2022.20230122-3) ... Setting up texlive-latex-base (2022.20230122-3) ... Setting up texlive-latex-recommended (2022.20230122-3) ... Setting up texlive-pictures (2022.20230122-3) ... Setting up texlive-fonts-recommended (2022.20230122-3) ... Setting up libgs10:arm64 (10.0.0~dfsg-11) ... Setting up texlive-latex-extra (2022.20230122-3) ... Setting up ghostscript (10.0.0~dfsg-11) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for tex-common (6.18) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqan-raptor_2.0.0.0.git.fecfbca+ds-3_source.changes dpkg-buildpackage: info: source package seqan-raptor dpkg-buildpackage: info: source version 2.0.0.0.git.fecfbca+ds-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds' dh_auto_configure -- -DRAPTOR_NATIVE_BUILD=OFF cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DRAPTOR_NATIVE_BUILD=OFF .. -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Native build disabled. Detecting popcnt support. -- Performing Test RAPTOR_HAS_POPCNT -- Performing Test RAPTOR_HAS_POPCNT - Failed -- Performing Test RAPTOR_HAS_OPENMP -- Performing Test RAPTOR_HAS_OPENMP - Success -- Performing Test RAPTOR_HAS_OPENMP_SIMD -- Performing Test RAPTOR_HAS_OPENMP_SIMD - Success -- Performing Test RAPTOR_SUPPRESS_GCC4_ABI -- Performing Test RAPTOR_SUPPRESS_GCC4_ABI - Success -- Finding program ccache -- Finding program ccache - Failed -- You can run `make` to build the application. -- Found Doxygen: /usr/bin/doxygen -- You can run `make doc` to build api documentation. -- Use googletest as external project. -- You can run `make test` to build and run tests. -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu make[1]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds' dh_auto_build --arch cd obj-aarch64-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/seqan-raptor-2.0.0.0.git.fecfbca+ds -B/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/CMakeFiles /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' make -f CMakeFiles/chopper_project.dir/build.make CMakeFiles/chopper_project.dir/depend make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/CMakeFiles/chopper_project.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' make -f CMakeFiles/chopper_project.dir/build.make CMakeFiles/chopper_project.dir/build make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 2%] Creating directories for 'chopper_project' /usr/bin/cmake -Dcfgdir= -P /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/tmp/chopper_project-mkdirs.cmake /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-stamp/chopper_project-mkdir [ 4%] No download step for 'chopper_project' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src && /usr/bin/cmake -E echo_append cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src && /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-stamp/chopper_project-download [ 6%] No patch step for 'chopper_project' /usr/bin/cmake -E echo_append /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-stamp/chopper_project-patch [ 8%] Performing configure step for 'chopper_project' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake --no-warn-unused-cli -DCMAKE_C_COMPILER=/usr/bin/cc "-DCMAKE_C_FLAGS=-g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/" -DCMAKE_CXX_COMPILER=/usr/bin/c++ "-DCMAKE_CXX_FLAGS=-g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -w" -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_PREFIX=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu -DCMAKE_VERBOSE_MAKEFILE=ON -DCHOPPER_SUBMODULES_DIR=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib -DCHOPPER_USE_CCACHE=OFF -DSEQAN3_SUBMODULES_DIR=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib -DCMAKE_INSTALL_LIBDIR=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/lib -DCMAKE_INSTALL_BINDIR=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/bin "-GUnix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper Not searching for unused variables given on the command line. Re-run cmake no build system arguments -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test CHOPPER_HAS_OPENMP -- Performing Test CHOPPER_HAS_OPENMP - Success -- Performing Test CHOPPER_HAS_OPENMP_SIMD -- Performing Test CHOPPER_HAS_OPENMP_SIMD - Success -- Performing Test CHOPPER_SUPPRESS_GCC4_ABI -- Performing Test CHOPPER_SUPPRESS_GCC4_ABI - Success -- You can run `make` to build the application. -- Found Doxygen: /usr/bin/doxygen -- You can run `make doc` to build api documentation. -- Configuring done -- Generating done -- Build files have been written to: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-stamp/chopper_project-configure [ 10%] Performing build step for 'chopper_project' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build && make make[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' /usr/bin/cmake -S/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper -B/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/CMakeFiles /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[6]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' make -f CMakeFiles/xxhash_project.dir/build.make CMakeFiles/xxhash_project.dir/depend make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/CMakeFiles/xxhash_project.dir/DependInfo.cmake --color= make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' make -f CMakeFiles/xxhash_project.dir/build.make CMakeFiles/xxhash_project.dir/build make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' make[7]: Nothing to be done for 'CMakeFiles/xxhash_project.dir/build'. make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' [ 0%] Built target xxhash_project make -f src/CMakeFiles/chopper_count_lib.dir/build.make src/CMakeFiles/chopper_count_lib.dir/depend make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' make -f src/CMakeFiles/chopper_layout_lib.dir/build.make src/CMakeFiles/chopper_layout_lib.dir/depend cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/chopper_count_lib.dir/DependInfo.cmake --color= make -f src/CMakeFiles/measure_hyperloglog.dir/build.make src/CMakeFiles/measure_hyperloglog.dir/depend make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/DependInfo.cmake --color= make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/measure_hyperloglog.dir/DependInfo.cmake --color= make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' make -f src/CMakeFiles/chopper_layout_lib.dir/build.make src/CMakeFiles/chopper_layout_lib.dir/build make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' make -f src/CMakeFiles/measure_hyperloglog.dir/build.make src/CMakeFiles/measure_hyperloglog.dir/build make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' make -f src/CMakeFiles/chopper_count_lib.dir/build.make src/CMakeFiles/chopper_count_lib.dir/build [ 12%] Building CXX object src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src/../include -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/lemon/include -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/simde/simde -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -w -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o -MF CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o.d -o CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src/chopper_layout.cpp make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' [ 25%] Building CXX object src/CMakeFiles/measure_hyperloglog.dir/measure_hyperloglog.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src/../include -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/lemon/include -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/simde/simde -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -w -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/CMakeFiles/measure_hyperloglog.dir/measure_hyperloglog.cpp.o -MF CMakeFiles/measure_hyperloglog.dir/measure_hyperloglog.cpp.o.d -o CMakeFiles/measure_hyperloglog.dir/measure_hyperloglog.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src/measure_hyperloglog.cpp [ 37%] Building CXX object src/CMakeFiles/chopper_count_lib.dir/chopper_count.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src/../include -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/lemon/include -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/simde/simde -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -w -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/CMakeFiles/chopper_count_lib.dir/chopper_count.cpp.o -MF CMakeFiles/chopper_count_lib.dir/chopper_count.cpp.o.d -o CMakeFiles/chopper_count_lib.dir/chopper_count.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src/chopper_count.cpp [ 50%] Linking CXX static library ../lib/libchopper_count_lib.a cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/src && /usr/bin/cmake -P CMakeFiles/chopper_count_lib.dir/cmake_clean_target.cmake cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper_count_lib.dir/link.txt --verbose=1 /usr/bin/ar qc ../lib/libchopper_count_lib.a CMakeFiles/chopper_count_lib.dir/chopper_count.cpp.o /usr/bin/ranlib ../lib/libchopper_count_lib.a make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' [ 50%] Built target chopper_count_lib [ 62%] Linking CXX static library ../lib/libchopper_layout_lib.a cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/src && /usr/bin/cmake -P CMakeFiles/chopper_layout_lib.dir/cmake_clean_target.cmake cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper_layout_lib.dir/link.txt --verbose=1 /usr/bin/ar qc ../lib/libchopper_layout_lib.a CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o /usr/bin/ranlib ../lib/libchopper_layout_lib.a make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' [ 62%] Built target chopper_layout_lib make -f src/CMakeFiles/chopper.dir/build.make src/CMakeFiles/chopper.dir/depend make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/chopper.dir/DependInfo.cmake --color= make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' make -f src/CMakeFiles/chopper.dir/build.make src/CMakeFiles/chopper.dir/build make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' [ 75%] Building CXX object src/CMakeFiles/chopper.dir/chopper.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src/../include -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/lemon/include -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/simde/simde -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -w -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/CMakeFiles/chopper.dir/chopper.cpp.o -MF CMakeFiles/chopper.dir/chopper.cpp.o.d -o CMakeFiles/chopper.dir/chopper.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src/chopper.cpp [ 87%] Linking CXX executable ../bin/measure_hyperloglog cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/measure_hyperloglog.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -w -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/measure_hyperloglog.dir/measure_hyperloglog.cpp.o -o ../bin/measure_hyperloglog /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lrt /usr/lib/aarch64-linux-gnu/libxxhash.a make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' [ 87%] Built target measure_hyperloglog [100%] Linking CXX executable ../bin/chopper cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -w -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/chopper.dir/chopper.cpp.o -o ../bin/chopper ../lib/libchopper_count_lib.a ../lib/libchopper_layout_lib.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lrt /usr/lib/aarch64-linux-gnu/libxxhash.a make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' [100%] Built target chopper make[6]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' /usr/bin/cmake -E cmake_progress_start /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/CMakeFiles 0 make[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-stamp/chopper_project-build [ 12%] Performing install step for 'chopper_project' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build && make install make[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' /usr/bin/cmake -S/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper -B/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/CMakeFiles /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[6]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' make -f CMakeFiles/xxhash_project.dir/build.make CMakeFiles/xxhash_project.dir/depend make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/CMakeFiles/xxhash_project.dir/DependInfo.cmake --color= make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' make -f CMakeFiles/xxhash_project.dir/build.make CMakeFiles/xxhash_project.dir/build make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' make[7]: Nothing to be done for 'CMakeFiles/xxhash_project.dir/build'. make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' [ 0%] Built target xxhash_project make -f src/CMakeFiles/chopper_count_lib.dir/build.make src/CMakeFiles/chopper_count_lib.dir/depend make -f src/CMakeFiles/chopper_layout_lib.dir/build.make src/CMakeFiles/chopper_layout_lib.dir/depend make -f src/CMakeFiles/measure_hyperloglog.dir/build.make src/CMakeFiles/measure_hyperloglog.dir/depend make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/chopper_count_lib.dir/DependInfo.cmake --color= make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/DependInfo.cmake --color= make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/measure_hyperloglog.dir/DependInfo.cmake --color= Dependencies file "src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/compiler_depend.internal". Dependencies file "src/CMakeFiles/chopper_count_lib.dir/chopper_count.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/chopper_count_lib.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target chopper_layout_lib Dependencies file "src/CMakeFiles/measure_hyperloglog.dir/measure_hyperloglog.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/measure_hyperloglog.dir/compiler_depend.internal". make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' make -f src/CMakeFiles/chopper_layout_lib.dir/build.make src/CMakeFiles/chopper_layout_lib.dir/build Consolidate compiler generated dependencies of target chopper_count_lib make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' make -f src/CMakeFiles/chopper_count_lib.dir/build.make src/CMakeFiles/chopper_count_lib.dir/build make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' Consolidate compiler generated dependencies of target measure_hyperloglog make[7]: Nothing to be done for 'src/CMakeFiles/chopper_layout_lib.dir/build'. make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' make -f src/CMakeFiles/measure_hyperloglog.dir/build.make src/CMakeFiles/measure_hyperloglog.dir/build make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' make[7]: Nothing to be done for 'src/CMakeFiles/chopper_count_lib.dir/build'. make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' make[7]: Nothing to be done for 'src/CMakeFiles/measure_hyperloglog.dir/build'. make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' [ 25%] Built target chopper_layout_lib [ 50%] Built target chopper_count_lib make -f src/CMakeFiles/chopper.dir/build.make src/CMakeFiles/chopper.dir/depend [ 75%] Built target measure_hyperloglog make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/chopper.dir/DependInfo.cmake --color= Dependencies file "src/CMakeFiles/chopper.dir/chopper.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/chopper.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target chopper make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' make -f src/CMakeFiles/chopper.dir/build.make src/CMakeFiles/chopper.dir/build make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' make[7]: Nothing to be done for 'src/CMakeFiles/chopper.dir/build'. make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' [100%] Built target chopper make[6]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' /usr/bin/cmake -E cmake_progress_start /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[6]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' make[6]: Nothing to be done for 'preinstall'. make[6]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/lib/libchopper_count_lib.a -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/lib/libchopper_layout_lib.a -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/bin/chopper make[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-stamp/chopper_project-install [ 14%] Completed 'chopper_project' /usr/bin/cmake -E make_directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/CMakeFiles /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/CMakeFiles/chopper_project-complete /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/chopper_project/src/chopper_project-stamp/chopper_project-done make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 14%] Built target chopper_project make -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/depend make -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/depend make -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/depend make -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/depend make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/upgrade /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/upgrade /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/upgrade/CMakeFiles/raptor_upgrade.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/argument_parsing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/CMakeFiles/raptor_build.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/DependInfo.cmake --color= make -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/depend make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' make -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/depend cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/search /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/search/CMakeFiles/raptor_search.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/threshold /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/threshold/CMakeFiles/raptor_threshold.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' make -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/build make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' make -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' make -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/build make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' make -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' make -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/build make -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/build make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 16%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o [ 18%] Building CXX object src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/parse_chopper_pack_line.cpp cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/upgrade && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o -MF CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o.d -o CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/upgrade/raptor_upgrade.cpp [ 20%] Building CXX object src/build/CMakeFiles/raptor_build.dir/compute_minimiser.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/CMakeFiles/raptor_build.dir/compute_minimiser.cpp.o -MF CMakeFiles/raptor_build.dir/compute_minimiser.cpp.o.d -o CMakeFiles/raptor_build.dir/compute_minimiser.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/compute_minimiser.cpp [ 22%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o [ 24%] Building CXX object src/build/CMakeFiles/raptor_build.dir/build_from_minimiser.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/one_indirect_error_model.cpp [ 26%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o [ 28%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/CMakeFiles/raptor_build.dir/build_from_minimiser.cpp.o -MF CMakeFiles/raptor_build.dir/build_from_minimiser.cpp.o.d -o CMakeFiles/raptor_build.dir/build_from_minimiser.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/build_from_minimiser.cpp cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/build_parsing.cpp cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/bin_size_in_bits.cpp [ 30%] Building CXX object src/search/CMakeFiles/raptor_search.dir/raptor_search.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/search/CMakeFiles/raptor_search.dir/raptor_search.cpp.o -MF CMakeFiles/raptor_search.dir/raptor_search.cpp.o.d -o CMakeFiles/raptor_search.dir/raptor_search.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/raptor_search.cpp [ 32%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/init_shared_meta.cpp [ 34%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_hibf.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/search/CMakeFiles/raptor_search.dir/search_hibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_hibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_hibf.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/search_hibf.cpp [ 36%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/chopper_build.cpp In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/chopper_build.cpp:8: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/vector:60, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 38%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/multiple_error_model.cpp [ 40%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o -MF CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o.d -o CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/pascal_row.cpp [ 42%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/one_error_model.cpp [ 44%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/parse_bin_path.cpp [ 46%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o -MF CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o.d -o CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/precompute_correction.cpp In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:11, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/chopper_build.cpp:11: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 22 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: the default value for the current CPU tuning is 256 bytes /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=256’, or disable this warning with ‘-Wno-interference-size’ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:23:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 23 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -MF CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o.d -o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/precompute_threshold.cpp [ 51%] Linking CXX static library ../../lib/libraptor_upgrade.a cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/upgrade && /usr/bin/cmake -P CMakeFiles/raptor_upgrade.dir/cmake_clean_target.cmake cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/upgrade && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_upgrade.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_upgrade.a CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o /usr/bin/ranlib ../../lib/libraptor_upgrade.a make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 51%] Built target raptor_upgrade [ 53%] Building CXX object src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o -MF CMakeFiles/raptor_build.dir/raptor_build.cpp.o.d -o CMakeFiles/raptor_build.dir/raptor_build.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/raptor_build.cpp [ 55%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/search_parsing.cpp [ 57%] Linking CXX static library ../../lib/libraptor_threshold.a cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/threshold && /usr/bin/cmake -P CMakeFiles/raptor_threshold.dir/cmake_clean_target.cmake cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/threshold && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_threshold.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_threshold.a CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o /usr/bin/ranlib ../../lib/libraptor_threshold.a make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 57%] Built target raptor_threshold [ 59%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/compute_kmers.cpp [ 61%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/upgrade_parsing.cpp [ 63%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/construct_ibf.cpp In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/construct_ibf.cpp:8: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/vector:60, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/construct_ibf.hpp:13, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/construct_ibf.cpp:11: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 22 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: the default value for the current CPU tuning is 256 bytes /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=256’, or disable this warning with ‘-Wno-interference-size’ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:23:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 23 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 65%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_ibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_ibf.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/search_ibf.cpp [ 67%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp:8: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/vector:60, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:11, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp:10: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 22 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: the default value for the current CPU tuning is 256 bytes /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=256’, or disable this warning with ‘-Wno-interference-size’ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:23:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 23 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 69%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/hierarchical_build.cpp In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/hierarchical_build.cpp:8: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/vector:60, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 71%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/initialise_max_bin_kmers.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/initialise_max_bin_kmers.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/initialise_max_bin_kmers.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/initialise_max_bin_kmers.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/initialise_max_bin_kmers.cpp In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/initialise_max_bin_kmers.cpp:8: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/vector:60, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/construct_ibf.hpp:13, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/hierarchical_build.cpp:11: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 22 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: the default value for the current CPU tuning is 256 bytes /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=256’, or disable this warning with ‘-Wno-interference-size’ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:23:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 23 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/insert_into_ibf.cpp In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/hierarchical_build.hpp:13, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/initialise_max_bin_kmers.cpp:11: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 22 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: the default value for the current CPU tuning is 256 bytes /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=256’, or disable this warning with ‘-Wno-interference-size’ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:23:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 23 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/loop_over_children.cpp [ 77%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_multiple.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/search/CMakeFiles/raptor_search.dir/search_multiple.cpp.o -MF CMakeFiles/raptor_search.dir/search_multiple.cpp.o.d -o CMakeFiles/raptor_search.dir/search_multiple.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/search_multiple.cpp In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/loop_over_children.cpp:8: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/vector:60, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 79%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_socks.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/search/CMakeFiles/raptor_search.dir/search_socks.cpp.o -MF CMakeFiles/raptor_search.dir/search_socks.cpp.o.d -o CMakeFiles/raptor_search.dir/search_socks.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/search_socks.cpp [ 81%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/parse_chopper_pack_header.cpp In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/parse_chopper_pack_header.cpp:12: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/parse_chopper_pack_header.cpp:8: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 83%] Linking CXX static library ../../lib/libraptor_build.a cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build && /usr/bin/cmake -P CMakeFiles/raptor_build.dir/cmake_clean_target.cmake cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_build.a CMakeFiles/raptor_build.dir/build_from_minimiser.cpp.o CMakeFiles/raptor_build.dir/compute_minimiser.cpp.o CMakeFiles/raptor_build.dir/raptor_build.cpp.o /usr/bin/ranlib ../../lib/libraptor_build.a In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/hierarchical_build.hpp:13, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/loop_over_children.cpp:12: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 22 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: the default value for the current CPU tuning is 256 bytes /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=256’, or disable this warning with ‘-Wno-interference-size’ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:23:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 23 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 83%] Built target raptor_build [ 85%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/parse_chopper_pack_line.cpp [ 87%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/read_chopper_pack_file.cpp [ 89%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/update_user_bins.cpp In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/read_chopper_pack_file.cpp:8: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/vector:60, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/update_user_bins.cpp:8: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/vector:60, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/read_chopper_pack_file.hpp:12, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/read_chopper_pack_file.cpp:12: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 22 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: the default value for the current CPU tuning is 256 bytes /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=256’, or disable this warning with ‘-Wno-interference-size’ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:23:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 23 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/update_user_bins.hpp:10, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/update_user_bins.cpp:10: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 22 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: the default value for the current CPU tuning is 256 bytes /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=256’, or disable this warning with ‘-Wno-interference-size’ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:23:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 23 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 91%] Linking CXX static library ../../lib/libraptor_argument_parsing.a cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/argument_parsing && /usr/bin/cmake -P CMakeFiles/raptor_argument_parsing.dir/cmake_clean_target.cmake cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/argument_parsing && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_argument_parsing.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_argument_parsing.a CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o /usr/bin/ranlib ../../lib/libraptor_argument_parsing.a make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 91%] Built target raptor_argument_parsing [ 93%] Linking CXX static library ../../../lib/libraptor_build_hibf.a cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf && /usr/bin/cmake -P CMakeFiles/raptor_build_hibf.dir/cmake_clean_target.cmake cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build_hibf.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libraptor_build_hibf.a CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o CMakeFiles/raptor_build_hibf.dir/initialise_max_bin_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o /usr/bin/ranlib ../../../lib/libraptor_build_hibf.a make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 93%] Built target raptor_build_hibf [ 95%] Linking CXX static library ../../lib/libraptor_search.a cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/search && /usr/bin/cmake -P CMakeFiles/raptor_search.dir/cmake_clean_target.cmake cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_search.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_search.a CMakeFiles/raptor_search.dir/raptor_search.cpp.o CMakeFiles/raptor_search.dir/search_hibf.cpp.o CMakeFiles/raptor_search.dir/search_ibf.cpp.o CMakeFiles/raptor_search.dir/search_multiple.cpp.o CMakeFiles/raptor_search.dir/search_socks.cpp.o /usr/bin/ranlib ../../lib/libraptor_search.a make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 95%] Built target raptor_search make -f src/CMakeFiles/raptor.dir/build.make src/CMakeFiles/raptor.dir/depend make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/CMakeFiles/raptor.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' make -f src/CMakeFiles/raptor.dir/build.make src/CMakeFiles/raptor.dir/build make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 97%] Building CXX object src/CMakeFiles/raptor.dir/raptor.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/CMakeFiles/raptor.dir/raptor.cpp.o -MF CMakeFiles/raptor.dir/raptor.cpp.o.d -o CMakeFiles/raptor.dir/raptor.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/raptor.cpp [100%] Linking CXX executable ../bin/raptor cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/raptor.dir/raptor.cpp.o -o ../bin/raptor ../lib/libraptor_argument_parsing.a ../lib/libraptor_build.a ../lib/libraptor_build_hibf.a ../lib/libraptor_search.a ../lib/libraptor_threshold.a ../lib/libraptor_upgrade.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lrt ../lib/libchopper_count_lib.a ../lib/libchopper_layout_lib.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [100%] Built target raptor make[3]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start 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'/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/seqan-raptor-2.0.0.0.git.fecfbca+ds -B/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 doc make[3]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/seqan-raptor-2.0.0.0.git.fecfbca+ds -B/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/CMakeFiles 1 /usr/bin/make -f CMakeFiles/Makefile2 doc/CMakeFiles/doc.dir/all make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/make -f doc/CMakeFiles/doc.dir/build.make doc/CMakeFiles/doc.dir/depend make[5]: Entering directory 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files... Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include Searching for example files... Searching for images... Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/doc Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/upgrade Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/threshold Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/search Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/argument_parsing Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/upgrade Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing Reading and parsing tag files Parsing files Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/adjust_seed.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/adjust_seed.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/argument_parsing/build_arguments.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/argument_parsing/build_arguments.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/argument_parsing/build_parsing.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/argument_parsing/build_parsing.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/argument_parsing/init_shared_meta.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/argument_parsing/init_shared_meta.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/argument_parsing/parse_bin_path.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/argument_parsing/parse_bin_path.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/argument_parsing/search_arguments.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/argument_parsing/search_arguments.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/argument_parsing/search_parsing.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/argument_parsing/search_parsing.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/argument_parsing/upgrade_arguments.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/argument_parsing/upgrade_arguments.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/argument_parsing/upgrade_parsing.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/argument_parsing/upgrade_parsing.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/argument_parsing/validators.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/argument_parsing/validators.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/build_from_files.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/build_from_files.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/build_from_minimiser.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/build_from_minimiser.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/call_parallel_on_bins.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/call_parallel_on_bins.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/compute_minimiser.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/compute_minimiser.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/bin_prefixes.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/bin_prefixes.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/bin_size_in_bits.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/bin_size_in_bits.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/build_data.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/build_data.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/chopper_build.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/chopper_build.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/chopper_pack_record.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/chopper_pack_record.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/compute_kmers.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/compute_kmers.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/construct_ibf.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/construct_ibf.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/hierarchical_build.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/hierarchical_build.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/initialise_max_bin_kmers.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/initialise_max_bin_kmers.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/insert_into_ibf.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/insert_into_ibf.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/loop_over_children.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/loop_over_children.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/node_data.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/node_data.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/parse_chopper_pack_header.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/parse_chopper_pack_header.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/parse_chopper_pack_line.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/parse_chopper_pack_line.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/read_chopper_pack_file.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/read_chopper_pack_file.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/update_user_bins.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf/update_user_bins.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/index_factory.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/index_factory.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/raptor_build.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/raptor_build.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/store_index.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/store_index.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/dna4_traits.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/dna4_traits.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/hierarchical_interleaved_bloom_filter.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/hierarchical_interleaved_bloom_filter.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/index.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/index.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/raptor.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/raptor.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/search/do_parallel.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/search/do_parallel.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/search/load_index.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/search/load_index.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/search/search.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/search/search.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/search/search_hibf.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/search/search_hibf.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/search/search_ibf.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/search/search_ibf.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/search/search_multiple.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/search/search_multiple.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/search/search_single.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/search/search_single.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/search/search_socks.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/search/search_socks.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/search/sync_out.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/search/sync_out.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/strong_types.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/strong_types.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/threshold/forward_strand_minimiser.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/threshold/forward_strand_minimiser.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/threshold/logspace.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/threshold/logspace.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/threshold/multiple_error_model.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/threshold/multiple_error_model.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/threshold/one_error_model.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/threshold/one_error_model.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/threshold/one_indirect_error_model.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/threshold/one_indirect_error_model.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/threshold/pascal_row.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/threshold/pascal_row.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/threshold/precompute_correction.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/threshold/precompute_correction.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/threshold/precompute_threshold.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/threshold/precompute_threshold.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/threshold/threshold.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/threshold/threshold.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/threshold/threshold_parameters.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/threshold/threshold_parameters.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/upgrade/upgrade.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/upgrade/upgrade.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/upgrade/upgrade_index.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/upgrade/upgrade_index.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/build_parsing.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/build_parsing.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/CMakeLists.txt... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/CMakeLists.txt... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/init_shared_meta.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/init_shared_meta.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/parse_bin_path.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/parse_bin_path.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/search_parsing.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/search_parsing.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/upgrade_parsing.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/upgrade_parsing.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/build_from_minimiser.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/build_from_minimiser.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/CMakeLists.txt... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/CMakeLists.txt... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/compute_minimiser.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/compute_minimiser.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/bin_size_in_bits.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/bin_size_in_bits.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/chopper_build.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/chopper_build.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/CMakeLists.txt... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/CMakeLists.txt... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/compute_kmers.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/compute_kmers.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/construct_ibf.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/construct_ibf.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/hierarchical_build.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/hierarchical_build.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/initialise_max_bin_kmers.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/initialise_max_bin_kmers.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/insert_into_ibf.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/insert_into_ibf.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/loop_over_children.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/loop_over_children.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/parse_chopper_pack_header.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/parse_chopper_pack_header.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/parse_chopper_pack_line.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/parse_chopper_pack_line.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/read_chopper_pack_file.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/read_chopper_pack_file.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/update_user_bins.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/update_user_bins.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/raptor_build.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/raptor_build.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/CMakeLists.txt... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/CMakeLists.txt... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/raptor.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/raptor.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/CMakeLists.txt... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/CMakeLists.txt... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/raptor_search.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/raptor_search.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/search_hibf.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/search_hibf.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/search_ibf.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/search_ibf.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/search_multiple.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/search_multiple.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/search_socks.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/search_socks.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/CMakeLists.txt... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/CMakeLists.txt... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/multiple_error_model.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/multiple_error_model.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/one_error_model.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/one_error_model.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/one_indirect_error_model.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/one_indirect_error_model.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/pascal_row.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/pascal_row.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/precompute_correction.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/precompute_correction.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/precompute_threshold.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/precompute_threshold.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/upgrade/CMakeLists.txt... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/upgrade/CMakeLists.txt... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/upgrade/raptor_upgrade.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/upgrade/raptor_upgrade.cpp... Reading /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/LICENSE.md... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file include/raptor/adjust_seed.hpp... Generating code for file include/raptor/argument_parsing/build_arguments.hpp... Generating code for file include/raptor/argument_parsing/build_parsing.hpp... Generating code for file include/raptor/argument_parsing/init_shared_meta.hpp... Generating code for file include/raptor/argument_parsing/parse_bin_path.hpp... Generating code for file include/raptor/argument_parsing/search_arguments.hpp... Generating code for file include/raptor/argument_parsing/search_parsing.hpp... Generating code for file include/raptor/argument_parsing/upgrade_arguments.hpp... Generating code for file include/raptor/argument_parsing/upgrade_parsing.hpp... Generating code for file include/raptor/argument_parsing/validators.hpp... Generating code for file include/raptor/build/build_from_files.hpp... Generating code for file include/raptor/build/build_from_minimiser.hpp... Generating code for file include/raptor/build/call_parallel_on_bins.hpp... Generating code for file include/raptor/build/compute_minimiser.hpp... Generating code for file include/raptor/build/hibf/bin_prefixes.hpp... Generating code for file include/raptor/build/hibf/bin_size_in_bits.hpp... Generating code for file include/raptor/build/hibf/build_data.hpp... Generating code for file include/raptor/build/hibf/chopper_build.hpp... Generating code for file include/raptor/build/hibf/chopper_pack_record.hpp... Generating code for file include/raptor/build/hibf/compute_kmers.hpp... Generating code for file include/raptor/build/hibf/construct_ibf.hpp... Generating code for file include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp... Generating code for file include/raptor/build/hibf/hierarchical_build.hpp... Generating code for file include/raptor/build/hibf/initialise_max_bin_kmers.hpp... Generating code for file include/raptor/build/hibf/insert_into_ibf.hpp... Generating code for file include/raptor/build/hibf/loop_over_children.hpp... Generating code for file include/raptor/build/hibf/node_data.hpp... Generating code for file include/raptor/build/hibf/parse_chopper_pack_header.hpp... Generating code for file include/raptor/build/hibf/parse_chopper_pack_line.hpp... Generating code for file include/raptor/build/hibf/read_chopper_pack_file.hpp... Generating code for file include/raptor/build/hibf/update_user_bins.hpp... Generating code for file include/raptor/build/index_factory.hpp... Generating code for file include/raptor/build/raptor_build.hpp... Generating code for file include/raptor/build/store_index.hpp... Generating code for file include/raptor/dna4_traits.hpp... Generating code for file include/raptor/hierarchical_interleaved_bloom_filter.hpp... Generating code for file include/raptor/index.hpp... Generating code for file include/raptor/raptor.hpp... Generating code for file include/raptor/search/do_parallel.hpp... Generating code for file include/raptor/search/load_index.hpp... Generating code for file include/raptor/search/search.hpp... Generating code for file include/raptor/search/search_hibf.hpp... Generating code for file include/raptor/search/search_ibf.hpp... Generating code for file include/raptor/search/search_multiple.hpp... Generating code for file include/raptor/search/search_single.hpp... Generating code for file include/raptor/search/search_socks.hpp... Generating code for file include/raptor/search/sync_out.hpp... Generating code for file include/raptor/strong_types.hpp... Generating code for file include/raptor/threshold/forward_strand_minimiser.hpp... Generating code for file include/raptor/threshold/logspace.hpp... Generating code for file include/raptor/threshold/multiple_error_model.hpp... Generating code for file include/raptor/threshold/one_error_model.hpp... Generating code for file include/raptor/threshold/one_indirect_error_model.hpp... Generating code for file include/raptor/threshold/pascal_row.hpp... Generating code for file include/raptor/threshold/precompute_correction.hpp... Generating code for file include/raptor/threshold/precompute_threshold.hpp... Generating code for file include/raptor/threshold/threshold.hpp... Generating code for file include/raptor/threshold/threshold_parameters.hpp... Generating code for file include/raptor/upgrade/upgrade.hpp... Generating code for file include/raptor/upgrade/upgrade_index.hpp... Generating file documentation... Generating docs for file include/raptor/adjust_seed.hpp... Generating docs for file include/raptor/argument_parsing/build_arguments.hpp... Generating docs for file include/raptor/argument_parsing/build_parsing.hpp... Generating docs for file include/raptor/argument_parsing/init_shared_meta.hpp... Generating docs for file include/raptor/argument_parsing/parse_bin_path.hpp... Generating docs for file include/raptor/argument_parsing/search_arguments.hpp... Generating docs for file include/raptor/argument_parsing/search_parsing.hpp... Generating docs for file include/raptor/argument_parsing/upgrade_arguments.hpp... Generating docs for file include/raptor/argument_parsing/upgrade_parsing.hpp... Generating docs for file include/raptor/argument_parsing/validators.hpp... Generating docs for file include/raptor/build/build_from_files.hpp... Generating docs for file include/raptor/build/build_from_minimiser.hpp... Generating docs for file include/raptor/build/call_parallel_on_bins.hpp... Generating docs for file include/raptor/build/compute_minimiser.hpp... Generating docs for file include/raptor/build/hibf/bin_prefixes.hpp... Generating docs for file include/raptor/build/hibf/bin_size_in_bits.hpp... Generating docs for file include/raptor/build/hibf/build_data.hpp... Generating docs for file include/raptor/build/hibf/chopper_build.hpp... Generating docs for file include/raptor/build/hibf/chopper_pack_record.hpp... Generating docs for file include/raptor/build/hibf/compute_kmers.hpp... Generating docs for file include/raptor/build/hibf/construct_ibf.hpp... Generating docs for file include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp... Generating docs for file include/raptor/build/hibf/hierarchical_build.hpp... Generating docs for file include/raptor/build/hibf/initialise_max_bin_kmers.hpp... Generating docs for file include/raptor/build/hibf/insert_into_ibf.hpp... Generating docs for file include/raptor/build/hibf/loop_over_children.hpp... Generating docs for file include/raptor/build/hibf/node_data.hpp... Generating docs for file include/raptor/build/hibf/parse_chopper_pack_header.hpp... Generating docs for file include/raptor/build/hibf/parse_chopper_pack_line.hpp... Generating docs for file include/raptor/build/hibf/read_chopper_pack_file.hpp... Generating docs for file include/raptor/build/hibf/update_user_bins.hpp... Generating docs for file include/raptor/build/index_factory.hpp... Generating docs for file include/raptor/build/raptor_build.hpp... Generating docs for file include/raptor/build/store_index.hpp... Generating docs for file include/raptor/dna4_traits.hpp... Generating docs for file include/raptor/hierarchical_interleaved_bloom_filter.hpp... Generating docs for file include/raptor/index.hpp... Generating docs for file include/raptor/raptor.hpp... Generating docs for file include/raptor/search/do_parallel.hpp... Generating docs for file include/raptor/search/load_index.hpp... Generating docs for file include/raptor/search/search.hpp... Generating docs for file include/raptor/search/search_hibf.hpp... Generating docs for file include/raptor/search/search_ibf.hpp... Generating docs for file include/raptor/search/search_multiple.hpp... Generating docs for file include/raptor/search/search_single.hpp... Generating docs for file include/raptor/search/search_socks.hpp... Generating docs for file include/raptor/search/sync_out.hpp... Generating docs for file include/raptor/strong_types.hpp... Generating docs for file include/raptor/threshold/forward_strand_minimiser.hpp... Generating docs for file include/raptor/threshold/logspace.hpp... Generating docs for file include/raptor/threshold/multiple_error_model.hpp... Generating docs for file include/raptor/threshold/one_error_model.hpp... Generating docs for file include/raptor/threshold/one_indirect_error_model.hpp... Generating docs for file include/raptor/threshold/pascal_row.hpp... Generating docs for file include/raptor/threshold/precompute_correction.hpp... Generating docs for file include/raptor/threshold/precompute_threshold.hpp... Generating docs for file include/raptor/threshold/threshold.hpp... Generating docs for file include/raptor/threshold/threshold_parameters.hpp... Generating docs for file include/raptor/upgrade/upgrade.hpp... Generating docs for file include/raptor/upgrade/upgrade_index.hpp... Generating docs for file LICENSE.md... Generating docs for file src/argument_parsing/build_parsing.cpp... Generating docs for file src/argument_parsing/init_shared_meta.cpp... Generating docs for file src/argument_parsing/parse_bin_path.cpp... Generating docs for file src/argument_parsing/search_parsing.cpp... Generating docs for file src/argument_parsing/upgrade_parsing.cpp... Generating docs for file src/build/build_from_minimiser.cpp... Generating docs for file src/build/compute_minimiser.cpp... Generating docs for file src/build/hibf/bin_size_in_bits.cpp... Generating docs for file src/build/hibf/chopper_build.cpp... Generating docs for file src/build/hibf/compute_kmers.cpp... Generating docs for file src/build/hibf/construct_ibf.cpp... Generating docs for file src/build/hibf/create_ibfs_from_chopper_pack.cpp... Generating docs for file src/build/hibf/hierarchical_build.cpp... Generating docs for file src/build/hibf/initialise_max_bin_kmers.cpp... Generating docs for file src/build/hibf/insert_into_ibf.cpp... Generating docs for file src/build/hibf/loop_over_children.cpp... Generating docs for file src/build/hibf/parse_chopper_pack_header.cpp... Generating docs for file src/build/hibf/parse_chopper_pack_line.cpp... Generating docs for file src/build/hibf/read_chopper_pack_file.cpp... Generating docs for file src/build/hibf/update_user_bins.cpp... Generating docs for file src/build/raptor_build.cpp... Generating docs for file src/raptor.cpp... Generating docs for file src/search/raptor_search.cpp... Generating docs for file src/search/search_hibf.cpp... Generating docs for file src/search/search_ibf.cpp... Generating docs for file src/search/search_multiple.cpp... Generating docs for file src/search/search_socks.cpp... Generating docs for file src/threshold/multiple_error_model.cpp... Generating docs for file src/threshold/one_error_model.cpp... Generating docs for file src/threshold/one_indirect_error_model.cpp... Generating docs for file src/threshold/pascal_row.cpp... Generating docs for file src/threshold/precompute_correction.cpp... Generating docs for file src/threshold/precompute_threshold.cpp... Generating docs for file src/argument_parsing/CMakeLists.txt... Generating docs for file src/build/CMakeLists.txt... Generating docs for file src/build/hibf/CMakeLists.txt... Generating docs for file src/CMakeLists.txt... Generating docs for file src/search/CMakeLists.txt... Generating docs for file src/threshold/CMakeLists.txt... Generating docs for file src/upgrade/CMakeLists.txt... Generating docs for file src/upgrade/raptor_upgrade.cpp... Generating page documentation... Generating docs for page md_LICENSE... Generating group documentation... Generating class documentation... Generating concept documentation... Generating namespace index... Generating docs for namespace raptor Generating docs for compound raptor::bin_validator... Generating docs for compound raptor::build_arguments... Generating docs for compound raptor::dna4_traits... Generating docs for compound raptor::hierarchical_interleaved_bloom_filter... Generating docs for nested compound raptor::hierarchical_interleaved_bloom_filter::counting_agent_type... Generating docs for nested compound raptor::hierarchical_interleaved_bloom_filter::membership_agent... Generating docs for nested compound raptor::hierarchical_interleaved_bloom_filter::user_bins... Generating docs for compound raptor::index_factory... Generating docs for compound raptor::pattern_size... Generating docs for compound raptor::positive_integer_validator... Generating docs for compound raptor::power_of_two_validator... Generating docs for compound raptor::raptor_index... Generating docs for compound raptor::search_arguments... Generating docs for compound raptor::size_validator... Generating docs for compound raptor::sync_out... Generating docs for compound raptor::upgrade_arguments... Generating docs for compound raptor::window... Generating docs for namespace raptor::detail Generating docs for namespace raptor::hibf Generating docs for compound raptor::hibf::build_data... Generating docs for compound raptor::hibf::chopper_pack_record... Generating docs for compound raptor::hibf::node_data... Generating docs for namespace raptor::index_structure Generating docs for concept raptor::index_structure::compressible_from... Generating docs for namespace raptor::logspace Generating docs for compound raptor::logspace::add_fn... Generating docs for namespace raptor::threshold Generating docs for compound raptor::threshold::forward_strand_minimiser... Generating docs for compound raptor::threshold::threshold... Generating docs for compound raptor::threshold::threshold_parameters... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... 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LaTeX Warning: Reference `loop__over__children_8cpp' on page 12 undefined on in put line 80. LaTeX Warning: Reference `parse__chopper__pack__header_8cpp' on page 12 undefin ed on input line 81. LaTeX Warning: Reference `parse__chopper__pack__line_8cpp' on page 12 undefined on input line 82. LaTeX Warning: Reference `read__chopper__pack__file_8cpp' on page 12 undefined on input line 83. LaTeX Warning: Reference `update__user__bins_8cpp' on page 12 undefined on inpu t line 84. LaTeX Warning: Reference `raptor__search_8cpp' on page 12 undefined on input li ne 85. LaTeX Warning: Reference `search__hibf_8cpp' on page 12 undefined on input line 86. LaTeX Warning: Reference `search__ibf_8cpp' on page 12 undefined on input line 87. LaTeX Warning: Reference `search__multiple_8cpp' on page 12 undefined on input line 88. LaTeX Warning: Reference `search__socks_8cpp' on page 12 undefined on input lin e 89. LaTeX Warning: Reference `multiple__error__model_8cpp' on page 12 undefined on input line 90. LaTeX Warning: Reference `one__error__model_8cpp' on page 12 undefined on input line 91. LaTeX Warning: Reference `one__indirect__error__model_8cpp' on page 12 undefine d on input line 92. LaTeX Warning: Reference `pascal__row_8cpp' on page 12 undefined on input line 93. LaTeX Warning: Reference `precompute__correction_8cpp' on page 12 undefined on input line 94. LaTeX Warning: Reference `precompute__threshold_8cpp' on page 12 undefined on i nput line 95. [12] LaTeX Warning: Reference `raptor__upgrade_8cpp' on page 13 undefined on input l ine 96. ) [13] [14] Chapter 7. (./namespaceraptor.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [15] [16] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [17] [18] [19] [20] [21] [22]) (./namespaceraptor_1_1detail.tex) (./namespaceraptor_1_1hibf.tex [23] Underfull \hbox (badness 10000) in paragraph at lines 40--42 []\T1/phv/m/n/10 size[]_[]t [] (lemon[]::[]List[]Digraph &ibf[]_[]graph, lemon[ ]::[]List[]Digraph[]::[]Node[]Map$\OML/cmm/m/it/10 <$ [24] Underfull \hbox (badness 3965) in paragraph at lines 54--56 []\T1/phv/m/n/10 template seqan3[]::interleaved[]_[]bloom[]_[]filter [] (robin[ ]_[] Underfull \hbox (badness 10000) in paragraph at lines 56--58 []\T1/phv/m/n/10 template void [] ([]$\OML/cmm/m/it/10 <$ Underfull \hbox (badness 10000) in paragraph at lines 58--60 []\T1/phv/m/n/10 template void [] ([]$\OML/cmm/m/it/10 <$ Underfull \hbox (badness 3657) in paragraph at lines 62--64 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[]hood[]::unordered[]_[]flat[] _[] Underfull \hbox (badness 2626) in paragraph at lines 72--74 []\T1/phv/m/n/10 template void [] ([]$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 seqan3 [] Underfull \hbox (badness 1448) in paragraph at lines 76--78 []\T1/phv/m/n/10 template void [] ([]$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 seqan3 []::data[]_[] [25] [26] Underfull \hbox (badness 10000) in paragraph at lines 139--140 \T1/pcr/m/n/8 template seqan3[]::interleaved[]_[]bloom[]_[]filter []$\OML/cmm/m /it/8 <$ \T1/pcr/m/n/8 seqan3[]::data[]_[]layout[] Underfull \hbox (badness 10000) in paragraph at lines 145--146 \T1/pcr/m/n/8 template seqan3[]::interleaved[]_[]bloom[]_[]filter []$\OML/cmm/m /it/8 <$ \T1/pcr/m/n/8 seqan3[]::data[]_[]layout[] Underfull \hbox (badness 10000) in paragraph at lines 164--165 \T1/pcr/m/n/8 template void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 seqan3[]::data[ ]_[]layout[]::uncompressed $\OML/cmm/m/it/8 >$ [27] [28] [29] [30] [31]) (./namespaceraptor_1_1index__structure.tex Underfull \hbox (badness 10000) in paragraph at lines 26--27 \T1/pcr/m/n/8 using [] = typedef []$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 seqan3[] Overfull \hbox (40.3489pt too wide) in paragraph at lines 32--33 \T1/pcr/m/n/8 using [] = typedef []$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 seqan3[] [32] Underfull \hbox (badness 10000) in paragraph at lines 38--39 \T1/pcr/m/n/8 using [] = typedef seqan3[]::interleaved[]_[]bloom[]_[]filter$\OM L/cmm/m/it/8 <$\T1/pcr/m/n/8 seqan3[]::data[]_[] ) (./namespaceraptor_1_1logspace.tex [33] Underfull \hbox (badness 10000) in paragraph at lines 71--72 \T1/pcr/m/n/8 constexpr double raptor[]::logspace[]::negative[]_[]inf {-std[]:: numeric[]_[]limits$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 double$\OML/cmm/m/it/8 >$[]\ T1/pcr/m/n/8 ::infinity()} ) (./namespaceraptor_1_1threshold.tex [34] [35] [36]) [37] [38] Chapter 8. (./conceptraptor_1_1index__structure_1_1compressible__from.tex) [39] [40] Chapter 9. (./structraptor_1_1logspace_1_1add__fn.tex) (./classraptor_1_1bin__validator.tex [41] [42] Underfull \hbox (badness 10000) in paragraph at lines 106--107 \T1/pcr/m/n/8 sharg[]::input[]_[]file[]_[]validator raptor[]::bin[]_[]validator []::sequence[]_[]file[]_[]validator {raptor[]::detail[] ) (./structraptor_1_1build__arguments.tex [43] [44] [45] [46]) (./structraptor_1_1hibf_1_1build__data.tex [47] Underfull \hbox (badness 10000) in paragraph at lines 82--84 []$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 data[]_[]layout[]_[]mode$\OML/cmm/m/it/8 >$ []$<$ \T1/pcr/m/n/8 data[]_[] [48] Underfull \hbox (badness 10000) in paragraph at lines 103--105 \T1/pcr/m/n/8 lemon[]::[]List[]Digraph[]::[]Node[]Map$\OML/cmm/m/it/8 <$[]$>$ [ ]$<$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::node[]_[]map ) (./structraptor_1_1hibf_1_1chopper__pack__record.tex [49] [50]) (./classraptor_1_1hierarchical__interleaved__bloom__filter_1_1counting__agent__ type.tex Package fancyhdr Warning: \headheight is too small (12.0pt): (fancyhdr) Make it at least 22.16548pt, for example: (fancyhdr) \setlength{\headheight}{22.16548pt}. (fancyhdr) You might also make \topmargin smaller to compensate: (fancyhdr) \addtolength{\topmargin}{-10.16548pt}. [51] Underfull \hbox (badness 10000) in paragraph at lines 54--57 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::counting[]_[]agent[]_[]type$\OML/cmm/m/it/8 <$ Underfull \hbox (badness 10000) in paragraph at lines 66--69 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::counting[]_[]agent[]_[]type$\OML/cmm/m/it/8 <$ Underfull \hbox (badness 10000) in paragraph at lines 78--81 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::counting[]_[]agent[]_[]type$\OML/cmm/m/it/8 <$ [52] Underfull \hbox (badness 10000) in paragraph at lines 90--93 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]$<$ Underfull \hbox (badness 10000) in paragraph at lines 105--109 \T1/pcr/m/n/8 seqan3[]::counting[]_[]vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 va lue[]_[]t $\OML/cmm/m/it/8 >$ \T1/pcr/m/n/8 const & []$\OML/cmm/m/it/8 <$ Underfull \hbox (badness 10000) in paragraph at lines 114--118 \T1/pcr/m/n/8 seqan3[]::counting[]_[]vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 va lue[]_[]t $\OML/cmm/m/it/8 >$ \T1/pcr/m/n/8 const & []$\OML/cmm/m/it/8 <$ Package fancyhdr Warning: \headheight is too small (12.0pt): (fancyhdr) Make it at least 22.16548pt, for example: (fancyhdr) \setlength{\headheight}{22.16548pt}. (fancyhdr) You might also make \topmargin smaller to compensate: (fancyhdr) \addtolength{\topmargin}{-10.16548pt}. [53] Package longtable Warning: Column widths have changed (longtable) in table 9.1 on input line 127. Package longtable Warning: Column widths have changed (longtable) in table 9.2 on input line 134. Underfull \hbox (badness 10000) detected at line 135 [][][] Overfull \hbox (78.18983pt too wide) in paragraph at lines 145--148 [] \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]$<$ Overfull \hbox (78.18983pt too wide) in paragraph at lines 157--160 [] \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]$<$ Underfull \hbox (badness 10000) in paragraph at lines 172--175 \T1/pcr/m/n/8 seqan3[]::counting[]_[]vector$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 val ue[]_[]t$\OML/cmm/m/it/8 >$ []$<$ \T1/pcr/m/n/8 data[]_[]layout[] ) (./structraptor_1_1dna4__traits.tex [54] <./structraptor_1_1dna4__traits.pdf> ) (./structraptor_1_1threshold_1_1forward__strand__minimiser.tex [55] [56] Package longtable Warning: Column widths have changed (longtable) in table 9.3 on input line 94. [57] Package longtable Warning: Column widths have changed (longtable) in table 9.4 on input line 142. ) (./classraptor_1_1hierarchical__interleaved__bloom__filter.tex [58] [59] Package longtable Warning: Column widths have changed (longtable) in table 9.5 on input line 72. Underfull \hbox (badness 10000) detected at line 73 [][][] [60] Underfull \hbox (badness 10000) in paragraph at lines 95--97 \T1/pcr/m/n/8 using []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mod e[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::ibf[]_[]t = seqan3[] Underfull \hbox (badness 10000) in paragraph at lines 109--111 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::hierarchical[]_[]interleaved[] Underfull \hbox (badness 10000) in paragraph at lines 120--122 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::hierarchical[]_[]interleaved[] Underfull \hbox (badness 10000) in paragraph at lines 131--133 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::hierarchical[]_[]interleaved[] Overfull \hbox (58.98982pt too wide) in paragraph at lines 142--144 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::$\OMS/cmsy/m/n/8 ^^X$[] [61] Underfull \hbox (badness 10000) in paragraph at lines 167--169 [] \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[] Underfull \hbox (badness 10000) in paragraph at lines 178--180 [] \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[] Underfull \hbox (badness 10000) in paragraph at lines 192--194 \T1/pcr/m/n/8 constexpr seqan3[]::data[]_[]layout []$\OML/cmm/m/it/8 <$ \T1/pcr /m/n/8 data[]_[]layout[]_[] [62] Underfull \hbox (badness 10000) in paragraph at lines 203--205 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$[]$>$ []$<$ \T1/pcr/m/n/8 data[]_ []layout[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::ibf[]_[] Underfull \hbox (badness 10000) in paragraph at lines 214--216 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 std[]::vector$\OML/ cmm/m/it/8 <$\T1/pcr/m/n/8 int64[]_[]t$\OML/cmm/m/it/8 >$ $>$ []$<$ \T1/pcr/m/n /8 data[]_[] ) (./classraptor_1_1index__factory.tex [63] [64]) (./classraptor_1_1hierarchical__interleaved__bloom__filter_1_1membership__agent .tex Package fancyhdr Warning: \headheight is too small (12.0pt): (fancyhdr) Make it at least 22.16548pt, for example: (fancyhdr) \setlength{\headheight}{22.16548pt}. (fancyhdr) You might also make \topmargin smaller to compensate: (fancyhdr) \addtolength{\topmargin}{-10.16548pt}. [65] Underfull \hbox (badness 10000) detected at line 48 [][][] Overfull \hbox (18.1601pt too wide) in paragraph at lines 58--60 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::membership[] Overfull \hbox (18.1601pt too wide) in paragraph at lines 69--71 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::membership[] [66] Overfull \hbox (18.1601pt too wide) in paragraph at lines 80--82 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::membership[] Overfull \hbox (24.7713pt too wide) in paragraph at lines 91--93 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::$\OMS/cmsy/m/n/8 ^^X$\T1/pcr/m/ n/8 membership[] Underfull \hbox (badness 10000) in paragraph at lines 105--108 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 int64[]_[]t $\OML/ cmm/m/it/8 >$ \T1/pcr/m/n/8 const & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_ []layout[]_[] Underfull \hbox (badness 10000) in paragraph at lines 113--116 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 int64[]_[]t $\OML/ cmm/m/it/8 >$ \T1/pcr/m/n/8 const & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_ []layout[]_[] Package fancyhdr Warning: \headheight is too small (12.0pt): (fancyhdr) Make it at least 22.16548pt, for example: (fancyhdr) \setlength{\headheight}{22.16548pt}. (fancyhdr) You might also make \topmargin smaller to compensate: (fancyhdr) \addtolength{\topmargin}{-10.16548pt}. [67] Package longtable Warning: Column widths have changed (longtable) in table 9.6 on input line 127. Underfull \hbox (badness 10000) detected at line 128 [][][] Overfull \hbox (22.9601pt too wide) in paragraph at lines 138--140 [] \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::membership[] Overfull \hbox (22.9601pt too wide) in paragraph at lines 149--151 [] \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::membership[] [68] Underfull \hbox (badness 10000) in paragraph at lines 163--165 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 int64[]_[]t$\OML/cm m/m/it/8 >$ []$<$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[] ) (./structraptor_1_1hibf_1_1node__data.tex [69]) (./structraptor_1_1pattern__size.tex [70]) (./classraptor_1_1positive__integer__validator.tex [71] [72]) (./structraptor_1_1power__of__two__validator.tex [73]) (./classraptor_1_1raptor__index.tex [74] [75] Underfull \hbox (badness 10000) in paragraph at lines 124--126 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::vector$\OML /cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::string $\OML/cmm/m/it/8 >$ $>$ \T1/pcr/m/n/ 8 const & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]t $\OML/cmm/m/it/8 >$[]\ T1/pcr/m/n/8 ::bin[]_[]path ( [76] [77] Underfull \hbox (badness 10000) in paragraph at lines 201--203 \T1/pcr/m/n/8 constexpr seqan3[]::data[]_[]layout []$\OML/cmm/m/it/8 <$ \T1/pcr /m/n/8 data[]_[]t $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::data[]_[]layout[]_[]mode = data[]_[]t[] ) (./structraptor_1_1search__arguments.tex [78] Underfull \hbox (badness 10000) in paragraph at lines 66--67 [] \T1/pcr/m/n/8 raptor[]::search[]_[]arguments[]::make[]_[]threshold[]_[]param eters ( [79] [80] [81]) (./classraptor_1_1size__validator.tex [82] [83] Underfull \hbox (badness 10000) in paragraph at lines 97--100 \T1/pcr/m/n/8 requires std[]::convertible[]_[]to$\OML/cmm/m/it/8 <$\T1/pcr/m/n/ 8 std[]::ranges[]::range[]_[]value[]_[]t$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 range[ ]_[]type$\OML/cmm/m/it/8 >$\T1/pcr/m/n/8 , [] const ) (./classraptor_1_1sync__out.tex [84] [85]) (./classraptor_1_1threshold_1_1threshold.tex [86] [87]) (./structraptor_1_1threshold_1_1threshold__parameters.tex [88] Underfull \hbox (badness 10000) in paragraph at lines 73--74 \T1/pcr/m/n/8 double raptor[]::threshold[]::threshold[]_[]parameters[]::percent age {std[]::numeric[]_[]limits$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 double$\OML/cmm/ m/it/8 >$[] ) (./structraptor_1_1upgrade__arguments.tex [89] [90]) (./classraptor_1_1hierarchical__interleaved__bloom__filter_1_1user__bins.tex [91] Underfull \hbox (badness 10000) in paragraph at lines 45--47 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 int64[]_[]t $\OML/ cmm/m/it/8 >$ \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layo ut[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[] [92] Underfull \hbox (badness 10000) in paragraph at lines 67--69 \T1/pcr/m/n/8 std[]::string & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layo ut[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[] Underfull \hbox (badness 10000) in paragraph at lines 78--80 \T1/pcr/m/n/8 size[]_[]t []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_ []mode[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::num[]_[] Underfull \hbox (badness 10000) in paragraph at lines 100--102 \T1/pcr/m/n/8 std[]::string const & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_ []layout[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[] Underfull \hbox (badness 10000) in paragraph at lines 111--113 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::set[]_[]ibf[]_[] [93] Underfull \hbox (badness 10000) in paragraph at lines 122--124 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::set[]_[]user[] Underfull \hbox (badness 10000) in paragraph at lines 133--136 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::write[]_[] ) (./structraptor_1_1window.tex [94]) [95] [96] Chapter 10. (./adjust__seed_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./adjust__seed_8hpp_source.tex) (./build__arguments_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [97]) (./build__arguments_8hpp_source.tex) (./build__parsing_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [98]) (./build__parsing_8hpp_source.tex) (./init__shared__meta_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./init__shared__meta_8hpp_source.tex [99]) (./parse__bin__path_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./parse__bin__path_8hpp_source.tex [100]) (./search__arguments_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./search__arguments_8hpp_source.tex [101]) (./search__parsing_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__parsing_8hpp_source.tex [102]) (./upgrade__arguments_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./upgrade__arguments_8hpp_source.tex) (./upgrade__parsing_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [103]) (./upgrade__parsing_8hpp_source.tex) (./validators_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./validators_8hpp_source.tex [104] [105] [106]) (./build__from__files_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./build__from__files_8hpp_source.tex [107]) (./build__from__minimiser_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [108]) (./build__from__minimiser_8hpp_source.tex) (./call__parallel__on__bins_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./call__parallel__on__bins_8hpp_source.tex [109]) (./compute__minimiser_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./compute__minimiser_8hpp_source.tex) (./bin__prefixes_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [110]) (./bin__prefixes_8hpp_source.tex) (./bin__size__in__bits_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./bin__size__in__bits_8hpp_source.tex [111]) (./build__data_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./build__data_8hpp_source.tex [112]) (./chopper__build_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [113]) (./chopper__build_8hpp_source.tex) (./chopper__pack__record_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./chopper__pack__record_8hpp_source.tex [114]) (./compute__kmers_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./compute__kmers_8hpp_source.tex [115]) (./construct__ibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 Underfull \hbox (badness 6927) in paragraph at lines 16--17 \T1/phv/m/n/10 seqan3[]::interleaved[]_[]bloom[]_[]filter [] (robin[]_[]hood[]: :unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML /cmm/m/it/10 >$ ) (./construct__ibf_8hpp_source.tex [116]) (./create__ibfs__from__chopper__pack_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./create__ibfs__from__chopper__pack_8hpp_source.tex) (./hierarchical__build_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [117]) (./hierarchical__build_8hpp_source.tex) (./initialise__max__bin__kmers_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 Underfull \hbox (badness 1406) in paragraph at lines 16--17 \T1/phv/m/n/10 size[]_[]t [] (robin[]_[]hood[]::unordered[]_[]flat[]_[]set$\OML /cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 & kmers, std[] [118]) (./initialise__max__bin__kmers_8hpp_source.tex) (./insert__into__ibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 1067) in paragraph at lines 17--19 \T1/phv/m/n/10 ::unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 const &kmers, size[]_[]t const n umber[]_[]of[]_[]bins, size[]_[]t const bin[]_[]index, ) (./insert__into__ibf_8hpp_source.tex [119]) (./loop__over__children_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./loop__over__children_8hpp_source.tex [120]) (./node__data_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./node__data_8hpp_source.tex [121]) (./parse__chopper__pack__header_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./parse__chopper__pack__header_8hpp_source.tex [122]) (./parse__chopper__pack__line_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./parse__chopper__pack__line_8hpp_source.tex) (./read__chopper__pack__file_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [123] Underfull \hbox (badness 2689) in paragraph at lines 15--16 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::string co nst ) (./read__chopper__pack__file_8hpp_source.tex) (./update__user__bins_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 Underfull \hbox (badness 1603) in paragraph at lines 15--16 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::vector$\O ML/cmm/m/it/10 <$ \T1/phv/m/n/10 int64[]_[]t $\OML/cmm/m/it/10 >$ ) (./update__user__bins_8hpp_source.tex [124]) (./index__factory_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./index__factory_8hpp_source.tex [125] [126]) (./raptor__build_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./raptor__build_8hpp_source.tex) (./store__index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./store__index_8hpp_source.tex [127]) (./dna4__traits_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./dna4__traits_8hpp_source.tex [128]) (./hierarchical__interleaved__bloom__filter_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./hierarchical__interleaved__bloom__filter_8hpp_source.tex [129] [130] [131] [132]) (./index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [133] Underfull \hbox (badness 10000) in paragraph at lines 31--33 []\T1/phv/m/n/10 using [] = hierarchical[]_[]interleaved[]_[]bloom[]_[]filter$\ OML/cmm/m/it/10 <$ \T1/phv/m/n/10 seqan3[]::data[]_[]layout[] ) (./index_8hpp_source.tex [134] [135] [136]) (./raptor_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./raptor_8hpp_source.tex) (./do__parallel_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [137]) (./do__parallel_8hpp_source.tex) (./load__index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [138]) (./load__index_8hpp_source.tex) (./search_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [139]) (./search_8hpp_source.tex) (./search__hibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__hibf_8hpp_source.tex) (./search__ibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [140]) (./search__ibf_8hpp_source.tex) (./search__multiple_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__multiple_8hpp_source.tex [141]) (./search__single_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./search__single_8hpp_source.tex [142] [143]) (./search__socks_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__socks_8hpp_source.tex [144]) (./sync__out_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./sync__out_8hpp_source.tex [145]) (./strong__types_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./strong__types_8hpp_source.tex) (./forward__strand__minimiser_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [146]) (./forward__strand__minimiser_8hpp_source.tex [147]) (./logspace_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [148]) (./logspace_8hpp_source.tex [149]) (./multiple__error__model_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./multiple__error__model_8hpp_source.tex) (./one__error__model_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [150]) (./one__error__model_8hpp_source.tex) (./one__indirect__error__model_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./one__indirect__error__model_8hpp_source.tex [151]) (./pascal__row_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./pascal__row_8hpp_source.tex) (./precompute__correction_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [152]) (./precompute__correction_8hpp_source.tex) (./precompute__threshold_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./precompute__threshold_8hpp_source.tex [153]) (./threshold_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./threshold_8hpp_source.tex [154]) (./threshold__parameters_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [155]) (./threshold__parameters_8hpp_source.tex) (./upgrade_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./upgrade_8hpp_source.tex [156]) (./upgrade__index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./upgrade__index_8hpp_source.tex [157]) (./_l_i_c_e_n_s_e_8md.tex) (./build__parsing_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./init__shared__meta_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./parse__bin__path_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [158]) (./search__parsing_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./upgrade__parsing_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [159]) (./build__from__minimiser_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./compute__minimiser_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./bin__size__in__bits_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [160]) (./chopper__build_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./compute__kmers_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [161]) (./construct__ibf_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 6927) in paragraph at lines 17--19 \T1/phv/m/n/10 seqan3[]::interleaved[]_[]bloom[]_[]filter [] (robin[]_[]hood[]: :unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML /cmm/m/it/10 >$ Underfull \hbox (badness 1205) in paragraph at lines 21--22 []\T1/phv/m/n/10 template seqan3[]::interleaved[]_[]bloom[]_[]filter [] ) (./create__ibfs__from__chopper__pack_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [162]) (./hierarchical__build_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--11 Underfull \hbox (badness 10000) in paragraph at lines 23--25 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[]hood[] Underfull \hbox (badness 10000) in paragraph at lines 25--26 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[]hood[] ) (./initialise__max__bin__kmers_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [163] Underfull \hbox (badness 1406) in paragraph at lines 18--20 \T1/phv/m/n/10 size[]_[]t [] (robin[]_[]hood[]::unordered[]_[]flat[]_[]set$\OML /cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 & kmers, std[] Underfull \hbox (badness 3189) in paragraph at lines 20--22 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[] ) (./insert__into__ibf_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 1067) in paragraph at lines 17--19 \T1/phv/m/n/10 ::unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 const &kmers, size[]_[]t const n umber[]_[]of[]_[]bins, size[]_[]t const bin[]_[]index, ) (./loop__over__children_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [164] Underfull \hbox (badness 10000) in paragraph at lines 20--22 []\T1/phv/m/n/10 template void [] (robin[]_[]hood[] Underfull \hbox (badness 10000) in paragraph at lines 22--23 []\T1/phv/m/n/10 template void [] (robin[]_[]hood[] ) (./parse__chopper__pack__header_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./parse__chopper__pack__line_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [165]) (./read__chopper__pack__file_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 2689) in paragraph at lines 17--19 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::string co nst Underfull \hbox (badness 1412) in paragraph at lines 19--21 []\T1/phv/m/n/10 template void [] (build[]_[]data$\OML/cmm/m/it/10 <$ Underfull \hbox (badness 10000) in paragraph at lines 21--22 []\T1/phv/m/n/10 template void [] (build[]_[]data$\OML/cmm/m/it/10 <$ ) (./update__user__bins_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [166] Underfull \hbox (badness 1603) in paragraph at lines 15--17 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::vector$\O ML/cmm/m/it/10 <$ \T1/phv/m/n/10 int64[]_[]t $\OML/cmm/m/it/10 >$ Underfull \hbox (badness 10000) in paragraph at lines 17--19 []\T1/phv/m/n/10 template void [] (build[]_[]data$\OML/cmm/m/it/10 <$ ) (./raptor__build_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./raptor_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [167]) (./raptor__search_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./search__hibf_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./search__ibf_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [168]) (./search__multiple_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--11 ) (./search__socks_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 [169]) (./multiple__error__model_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./one__error__model_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./one__indirect__error__model_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [170]) (./pascal__row_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./precompute__correction_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 8--13 [171] Underfull \hbox (badness 10000) detected at line 36 [][][] ) (./precompute__threshold_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 8--15 Underfull \hbox (badness 10000) detected at line 38 [][][] ) (./argument__parsing_2_c_make_lists_8txt.tex) (./build_2_c_make_lists_8txt.tex) (./build_2hibf_2_c_make_lists_8txt.tex) (./_c_make_lists_8txt.tex) (./search_2_c_make_lists_8txt.tex) (./threshold_2_c_make_lists_8txt.tex) (./upgrade_2_c_make_lists_8txt.tex) (./raptor__upgrade_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [172]) [173] [174] No file refman.ind. Package longtable Warning: Table widths have changed. Rerun LaTeX. (./refman.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `refman.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on refman.pdf (176 pages, 521034 bytes). Transcript written on refman.log. makeindex refman.idx This is makeindex, version 2.16 [TeX Live 2022] (kpathsea + Thai support). Scanning input file refman.idx....done (837 entries accepted, 0 rejected). Sorting entries..........done (9156 comparisons). Generating output file refman.ind....done (1045 lines written, 0 warnings). Output written in refman.ind. 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(./md__l_i_c_e_n_s_e.tex) [1] [2] Chapter 2. (./namespaces.tex) [3] [4] Chapter 3. (./concepts.tex) [5] [6] Chapter 4. (./hierarchy.tex) [7] [8] Chapter 5. (./annotated.tex) [9] [10] Chapter 6. (./files.tex [11] [12]) [13] [14] Chapter 7. 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(./conceptraptor_1_1index__structure_1_1compressible__from.tex) [39] [40] Chapter 9. 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[65] Underfull \hbox (badness 10000) detected at line 48 [][][] Overfull \hbox (18.1601pt too wide) in paragraph at lines 58--60 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::membership[] Overfull \hbox (18.1601pt too wide) in paragraph at lines 69--71 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::membership[] [66] Overfull \hbox (18.1601pt too wide) in paragraph at lines 80--82 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::membership[] Overfull \hbox (24.7713pt too wide) in paragraph at lines 91--93 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::$\OMS/cmsy/m/n/8 ^^X$\T1/pcr/m/ n/8 membership[] Underfull \hbox (badness 10000) in paragraph at lines 105--108 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 int64[]_[]t $\OML/ cmm/m/it/8 >$ \T1/pcr/m/n/8 const & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_ []layout[]_[] Underfull \hbox (badness 10000) in paragraph at lines 113--116 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 int64[]_[]t $\OML/ cmm/m/it/8 >$ \T1/pcr/m/n/8 const & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_ []layout[]_[] Package fancyhdr Warning: \headheight is too small (12.0pt): (fancyhdr) Make it at least 22.16548pt, for example: (fancyhdr) \setlength{\headheight}{22.16548pt}. (fancyhdr) You might also make \topmargin smaller to compensate: (fancyhdr) \addtolength{\topmargin}{-10.16548pt}. [67] Underfull \hbox (badness 10000) detected at line 128 [][][] Overfull \hbox (22.9601pt too wide) in paragraph at lines 138--140 [] \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::membership[] Overfull \hbox (22.9601pt too wide) in paragraph at lines 149--151 [] \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::membership[] [68] Underfull \hbox (badness 10000) in paragraph at lines 163--165 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 int64[]_[]t$\OML/cm m/m/it/8 >$ []$<$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[] ) (./structraptor_1_1hibf_1_1node__data.tex [69]) (./structraptor_1_1pattern__size.tex [70]) (./classraptor_1_1positive__integer__validator.tex [71] [72]) (./structraptor_1_1power__of__two__validator.tex [73]) (./classraptor_1_1raptor__index.tex [74] [75] Underfull \hbox (badness 10000) in paragraph at lines 124--126 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::vector$\OML /cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::string $\OML/cmm/m/it/8 >$ $>$ \T1/pcr/m/n/ 8 const & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]t $\OML/cmm/m/it/8 >$[]\ T1/pcr/m/n/8 ::bin[]_[]path ( [76] [77] Underfull \hbox (badness 10000) in paragraph at lines 201--203 \T1/pcr/m/n/8 constexpr seqan3[]::data[]_[]layout []$\OML/cmm/m/it/8 <$ \T1/pcr /m/n/8 data[]_[]t $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::data[]_[]layout[]_[]mode = data[]_[]t[] ) (./structraptor_1_1search__arguments.tex [78] Underfull \hbox (badness 10000) in paragraph at lines 66--67 [] \T1/pcr/m/n/8 raptor[]::search[]_[]arguments[]::make[]_[]threshold[]_[]param eters ( [79] [80] [81]) (./classraptor_1_1size__validator.tex [82] [83] Underfull \hbox (badness 10000) in paragraph at lines 97--100 \T1/pcr/m/n/8 requires std[]::convertible[]_[]to$\OML/cmm/m/it/8 <$\T1/pcr/m/n/ 8 std[]::ranges[]::range[]_[]value[]_[]t$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 range[ ]_[]type$\OML/cmm/m/it/8 >$\T1/pcr/m/n/8 , [] const ) (./classraptor_1_1sync__out.tex [84] [85]) (./classraptor_1_1threshold_1_1threshold.tex [86] [87]) (./structraptor_1_1threshold_1_1threshold__parameters.tex [88] Underfull \hbox (badness 10000) in paragraph at lines 73--74 \T1/pcr/m/n/8 double raptor[]::threshold[]::threshold[]_[]parameters[]::percent age {std[]::numeric[]_[]limits$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 double$\OML/cmm/ m/it/8 >$[] ) (./structraptor_1_1upgrade__arguments.tex [89] [90]) (./classraptor_1_1hierarchical__interleaved__bloom__filter_1_1user__bins.tex [91] Underfull \hbox (badness 10000) in paragraph at lines 45--47 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 int64[]_[]t $\OML/ cmm/m/it/8 >$ \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layo ut[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[] [92] Underfull \hbox (badness 10000) in paragraph at lines 67--69 \T1/pcr/m/n/8 std[]::string & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layo ut[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[] Underfull \hbox (badness 10000) in paragraph at lines 78--80 \T1/pcr/m/n/8 size[]_[]t []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_ []mode[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::num[]_[] Underfull \hbox (badness 10000) in paragraph at lines 100--102 \T1/pcr/m/n/8 std[]::string const & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_ []layout[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[] Underfull \hbox (badness 10000) in paragraph at lines 111--113 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::set[]_[]ibf[]_[] [93] Underfull \hbox (badness 10000) in paragraph at lines 122--124 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::set[]_[]user[] Underfull \hbox (badness 10000) in paragraph at lines 133--136 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::write[]_[] ) (./structraptor_1_1window.tex [94]) [95] [96] Chapter 10. (./adjust__seed_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./adjust__seed_8hpp_source.tex) (./build__arguments_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [97]) (./build__arguments_8hpp_source.tex) (./build__parsing_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [98]) (./build__parsing_8hpp_source.tex) (./init__shared__meta_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./init__shared__meta_8hpp_source.tex [99]) (./parse__bin__path_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./parse__bin__path_8hpp_source.tex [100]) (./search__arguments_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./search__arguments_8hpp_source.tex [101]) (./search__parsing_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__parsing_8hpp_source.tex [102]) (./upgrade__arguments_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./upgrade__arguments_8hpp_source.tex) (./upgrade__parsing_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [103]) (./upgrade__parsing_8hpp_source.tex) (./validators_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./validators_8hpp_source.tex [104] [105] [106]) (./build__from__files_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./build__from__files_8hpp_source.tex [107]) (./build__from__minimiser_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [108]) (./build__from__minimiser_8hpp_source.tex) (./call__parallel__on__bins_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./call__parallel__on__bins_8hpp_source.tex [109]) (./compute__minimiser_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./compute__minimiser_8hpp_source.tex) (./bin__prefixes_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [110]) (./bin__prefixes_8hpp_source.tex) (./bin__size__in__bits_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./bin__size__in__bits_8hpp_source.tex [111]) (./build__data_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./build__data_8hpp_source.tex [112]) (./chopper__build_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [113]) (./chopper__build_8hpp_source.tex) (./chopper__pack__record_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./chopper__pack__record_8hpp_source.tex [114]) (./compute__kmers_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./compute__kmers_8hpp_source.tex [115]) (./construct__ibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 Underfull \hbox (badness 6927) in paragraph at lines 16--17 \T1/phv/m/n/10 seqan3[]::interleaved[]_[]bloom[]_[]filter [] (robin[]_[]hood[]: :unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML /cmm/m/it/10 >$ ) (./construct__ibf_8hpp_source.tex [116]) (./create__ibfs__from__chopper__pack_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./create__ibfs__from__chopper__pack_8hpp_source.tex) (./hierarchical__build_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [117]) (./hierarchical__build_8hpp_source.tex) (./initialise__max__bin__kmers_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 Underfull \hbox (badness 1406) in paragraph at lines 16--17 \T1/phv/m/n/10 size[]_[]t [] (robin[]_[]hood[]::unordered[]_[]flat[]_[]set$\OML /cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 & kmers, std[] [118]) (./initialise__max__bin__kmers_8hpp_source.tex) (./insert__into__ibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 1067) in paragraph at lines 17--19 \T1/phv/m/n/10 ::unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 const &kmers, size[]_[]t const n umber[]_[]of[]_[]bins, size[]_[]t const bin[]_[]index, ) (./insert__into__ibf_8hpp_source.tex [119]) (./loop__over__children_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./loop__over__children_8hpp_source.tex [120]) (./node__data_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./node__data_8hpp_source.tex [121]) (./parse__chopper__pack__header_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./parse__chopper__pack__header_8hpp_source.tex [122]) (./parse__chopper__pack__line_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./parse__chopper__pack__line_8hpp_source.tex) (./read__chopper__pack__file_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [123] Underfull \hbox (badness 2689) in paragraph at lines 15--16 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::string co nst ) (./read__chopper__pack__file_8hpp_source.tex) (./update__user__bins_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 Underfull \hbox (badness 1603) in paragraph at lines 15--16 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::vector$\O ML/cmm/m/it/10 <$ \T1/phv/m/n/10 int64[]_[]t $\OML/cmm/m/it/10 >$ ) (./update__user__bins_8hpp_source.tex [124]) (./index__factory_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./index__factory_8hpp_source.tex [125] [126]) (./raptor__build_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./raptor__build_8hpp_source.tex) (./store__index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./store__index_8hpp_source.tex [127]) (./dna4__traits_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./dna4__traits_8hpp_source.tex [128]) (./hierarchical__interleaved__bloom__filter_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./hierarchical__interleaved__bloom__filter_8hpp_source.tex [129] [130] [131] [132]) (./index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [133] Underfull \hbox (badness 10000) in paragraph at lines 31--33 []\T1/phv/m/n/10 using [] = hierarchical[]_[]interleaved[]_[]bloom[]_[]filter$\ OML/cmm/m/it/10 <$ \T1/phv/m/n/10 seqan3[]::data[]_[]layout[] ) (./index_8hpp_source.tex [134] [135] [136]) (./raptor_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./raptor_8hpp_source.tex) (./do__parallel_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [137]) (./do__parallel_8hpp_source.tex) (./load__index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [138]) (./load__index_8hpp_source.tex) (./search_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [139]) (./search_8hpp_source.tex) (./search__hibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__hibf_8hpp_source.tex) (./search__ibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [140]) (./search__ibf_8hpp_source.tex) (./search__multiple_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__multiple_8hpp_source.tex [141]) (./search__single_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./search__single_8hpp_source.tex [142] [143]) (./search__socks_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__socks_8hpp_source.tex [144]) (./sync__out_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./sync__out_8hpp_source.tex [145]) (./strong__types_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./strong__types_8hpp_source.tex) (./forward__strand__minimiser_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [146]) (./forward__strand__minimiser_8hpp_source.tex [147]) (./logspace_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [148]) (./logspace_8hpp_source.tex [149]) (./multiple__error__model_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./multiple__error__model_8hpp_source.tex) (./one__error__model_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [150]) (./one__error__model_8hpp_source.tex) (./one__indirect__error__model_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./one__indirect__error__model_8hpp_source.tex [151]) (./pascal__row_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./pascal__row_8hpp_source.tex) (./precompute__correction_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [152]) (./precompute__correction_8hpp_source.tex) (./precompute__threshold_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./precompute__threshold_8hpp_source.tex [153]) (./threshold_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./threshold_8hpp_source.tex [154]) (./threshold__parameters_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [155]) (./threshold__parameters_8hpp_source.tex) (./upgrade_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./upgrade_8hpp_source.tex [156]) (./upgrade__index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./upgrade__index_8hpp_source.tex [157]) (./_l_i_c_e_n_s_e_8md.tex) (./build__parsing_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./init__shared__meta_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./parse__bin__path_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [158]) (./search__parsing_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./upgrade__parsing_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [159]) (./build__from__minimiser_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./compute__minimiser_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./bin__size__in__bits_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [160]) (./chopper__build_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./compute__kmers_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [161]) (./construct__ibf_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 6927) in paragraph at lines 17--19 \T1/phv/m/n/10 seqan3[]::interleaved[]_[]bloom[]_[]filter [] (robin[]_[]hood[]: :unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML /cmm/m/it/10 >$ Underfull \hbox (badness 1205) in paragraph at lines 21--22 []\T1/phv/m/n/10 template seqan3[]::interleaved[]_[]bloom[]_[]filter [] ) (./create__ibfs__from__chopper__pack_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [162]) (./hierarchical__build_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--11 Underfull \hbox (badness 10000) in paragraph at lines 23--25 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[]hood[] Underfull \hbox (badness 10000) in paragraph at lines 25--26 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[]hood[] ) (./initialise__max__bin__kmers_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [163] Underfull \hbox (badness 1406) in paragraph at lines 18--20 \T1/phv/m/n/10 size[]_[]t [] (robin[]_[]hood[]::unordered[]_[]flat[]_[]set$\OML /cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 & kmers, std[] Underfull \hbox (badness 3189) in paragraph at lines 20--22 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[] ) (./insert__into__ibf_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 1067) in paragraph at lines 17--19 \T1/phv/m/n/10 ::unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 const &kmers, size[]_[]t const n umber[]_[]of[]_[]bins, size[]_[]t const bin[]_[]index, ) (./loop__over__children_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [164] Underfull \hbox (badness 10000) in paragraph at lines 20--22 []\T1/phv/m/n/10 template void [] (robin[]_[]hood[] Underfull \hbox (badness 10000) in paragraph at lines 22--23 []\T1/phv/m/n/10 template void [] (robin[]_[]hood[] ) (./parse__chopper__pack__header_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./parse__chopper__pack__line_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [165]) (./read__chopper__pack__file_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 2689) in paragraph at lines 17--19 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::string co nst Underfull \hbox (badness 1412) in paragraph at lines 19--21 []\T1/phv/m/n/10 template void [] (build[]_[]data$\OML/cmm/m/it/10 <$ Underfull \hbox (badness 10000) in paragraph at lines 21--22 []\T1/phv/m/n/10 template void [] (build[]_[]data$\OML/cmm/m/it/10 <$ ) (./update__user__bins_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [166] Underfull \hbox (badness 1603) in paragraph at lines 15--17 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::vector$\O ML/cmm/m/it/10 <$ \T1/phv/m/n/10 int64[]_[]t $\OML/cmm/m/it/10 >$ Underfull \hbox (badness 10000) in paragraph at lines 17--19 []\T1/phv/m/n/10 template void [] (build[]_[]data$\OML/cmm/m/it/10 <$ ) (./raptor__build_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 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(./md__l_i_c_e_n_s_e.tex) [1] [2] Chapter 2. (./namespaces.tex) [3] [4] Chapter 3. (./concepts.tex) [5] [6] Chapter 4. (./hierarchy.tex) [7] [8] Chapter 5. (./annotated.tex) [9] [10] Chapter 6. (./files.tex [11] [12]) [13] [14] Chapter 7. 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(./conceptraptor_1_1index__structure_1_1compressible__from.tex) [39] [40] Chapter 9. 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[65] Underfull \hbox (badness 10000) detected at line 48 [][][] Overfull \hbox (18.1601pt too wide) in paragraph at lines 58--60 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::membership[] Overfull \hbox (18.1601pt too wide) in paragraph at lines 69--71 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::membership[] [66] Overfull \hbox (18.1601pt too wide) in paragraph at lines 80--82 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::membership[] Overfull \hbox (24.7713pt too wide) in paragraph at lines 91--93 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::$\OMS/cmsy/m/n/8 ^^X$\T1/pcr/m/ n/8 membership[] Underfull \hbox (badness 10000) in paragraph at lines 105--108 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 int64[]_[]t $\OML/ cmm/m/it/8 >$ \T1/pcr/m/n/8 const & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_ []layout[]_[] Underfull \hbox (badness 10000) in paragraph at lines 113--116 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 int64[]_[]t $\OML/ cmm/m/it/8 >$ \T1/pcr/m/n/8 const & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_ []layout[]_[] Package fancyhdr Warning: \headheight is too small (12.0pt): (fancyhdr) Make it at least 22.16548pt, for example: (fancyhdr) \setlength{\headheight}{22.16548pt}. (fancyhdr) You might also make \topmargin smaller to compensate: (fancyhdr) \addtolength{\topmargin}{-10.16548pt}. [67] Underfull \hbox (badness 10000) detected at line 128 [][][] Overfull \hbox (22.9601pt too wide) in paragraph at lines 138--140 [] \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::membership[] Overfull \hbox (22.9601pt too wide) in paragraph at lines 149--151 [] \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::membership[] [68] Underfull \hbox (badness 10000) in paragraph at lines 163--165 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 int64[]_[]t$\OML/cm m/m/it/8 >$ []$<$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[] ) (./structraptor_1_1hibf_1_1node__data.tex [69]) (./structraptor_1_1pattern__size.tex [70]) (./classraptor_1_1positive__integer__validator.tex [71] [72]) (./structraptor_1_1power__of__two__validator.tex [73]) (./classraptor_1_1raptor__index.tex [74] [75] Underfull \hbox (badness 10000) in paragraph at lines 124--126 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::vector$\OML /cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::string $\OML/cmm/m/it/8 >$ $>$ \T1/pcr/m/n/ 8 const & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]t $\OML/cmm/m/it/8 >$[]\ T1/pcr/m/n/8 ::bin[]_[]path ( [76] [77] Underfull \hbox (badness 10000) in paragraph at lines 201--203 \T1/pcr/m/n/8 constexpr seqan3[]::data[]_[]layout []$\OML/cmm/m/it/8 <$ \T1/pcr /m/n/8 data[]_[]t $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::data[]_[]layout[]_[]mode = data[]_[]t[] ) (./structraptor_1_1search__arguments.tex [78] Underfull \hbox (badness 10000) in paragraph at lines 66--67 [] \T1/pcr/m/n/8 raptor[]::search[]_[]arguments[]::make[]_[]threshold[]_[]param eters ( [79] [80] [81]) (./classraptor_1_1size__validator.tex [82] [83] Underfull \hbox (badness 10000) in paragraph at lines 97--100 \T1/pcr/m/n/8 requires std[]::convertible[]_[]to$\OML/cmm/m/it/8 <$\T1/pcr/m/n/ 8 std[]::ranges[]::range[]_[]value[]_[]t$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 range[ ]_[]type$\OML/cmm/m/it/8 >$\T1/pcr/m/n/8 , [] const ) (./classraptor_1_1sync__out.tex [84] [85]) (./classraptor_1_1threshold_1_1threshold.tex [86] [87]) (./structraptor_1_1threshold_1_1threshold__parameters.tex [88] Underfull \hbox (badness 10000) in paragraph at lines 73--74 \T1/pcr/m/n/8 double raptor[]::threshold[]::threshold[]_[]parameters[]::percent age {std[]::numeric[]_[]limits$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 double$\OML/cmm/ m/it/8 >$[] ) (./structraptor_1_1upgrade__arguments.tex [89] [90]) (./classraptor_1_1hierarchical__interleaved__bloom__filter_1_1user__bins.tex [91] Underfull \hbox (badness 10000) in paragraph at lines 45--47 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 int64[]_[]t $\OML/ cmm/m/it/8 >$ \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layo ut[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[] [92] Underfull \hbox (badness 10000) in paragraph at lines 67--69 \T1/pcr/m/n/8 std[]::string & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layo ut[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[] Underfull \hbox (badness 10000) in paragraph at lines 78--80 \T1/pcr/m/n/8 size[]_[]t []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_ []mode[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::num[]_[] Underfull \hbox (badness 10000) in paragraph at lines 100--102 \T1/pcr/m/n/8 std[]::string const & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_ []layout[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[] Underfull \hbox (badness 10000) in paragraph at lines 111--113 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::set[]_[]ibf[]_[] [93] Underfull \hbox (badness 10000) in paragraph at lines 122--124 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::set[]_[]user[] Underfull \hbox (badness 10000) in paragraph at lines 133--136 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::write[]_[] ) (./structraptor_1_1window.tex [94]) [95] [96] Chapter 10. (./adjust__seed_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./adjust__seed_8hpp_source.tex) (./build__arguments_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [97]) (./build__arguments_8hpp_source.tex) (./build__parsing_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [98]) (./build__parsing_8hpp_source.tex) (./init__shared__meta_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./init__shared__meta_8hpp_source.tex [99]) (./parse__bin__path_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./parse__bin__path_8hpp_source.tex [100]) (./search__arguments_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./search__arguments_8hpp_source.tex [101]) (./search__parsing_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__parsing_8hpp_source.tex [102]) (./upgrade__arguments_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./upgrade__arguments_8hpp_source.tex) (./upgrade__parsing_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [103]) (./upgrade__parsing_8hpp_source.tex) (./validators_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./validators_8hpp_source.tex [104] [105] [106]) (./build__from__files_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./build__from__files_8hpp_source.tex [107]) (./build__from__minimiser_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [108]) (./build__from__minimiser_8hpp_source.tex) (./call__parallel__on__bins_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./call__parallel__on__bins_8hpp_source.tex [109]) (./compute__minimiser_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./compute__minimiser_8hpp_source.tex) (./bin__prefixes_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [110]) (./bin__prefixes_8hpp_source.tex) (./bin__size__in__bits_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./bin__size__in__bits_8hpp_source.tex [111]) (./build__data_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./build__data_8hpp_source.tex [112]) (./chopper__build_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [113]) (./chopper__build_8hpp_source.tex) (./chopper__pack__record_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./chopper__pack__record_8hpp_source.tex [114]) (./compute__kmers_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./compute__kmers_8hpp_source.tex [115]) (./construct__ibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 Underfull \hbox (badness 6927) in paragraph at lines 16--17 \T1/phv/m/n/10 seqan3[]::interleaved[]_[]bloom[]_[]filter [] (robin[]_[]hood[]: :unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML /cmm/m/it/10 >$ ) (./construct__ibf_8hpp_source.tex [116]) (./create__ibfs__from__chopper__pack_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./create__ibfs__from__chopper__pack_8hpp_source.tex) (./hierarchical__build_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [117]) (./hierarchical__build_8hpp_source.tex) (./initialise__max__bin__kmers_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 Underfull \hbox (badness 1406) in paragraph at lines 16--17 \T1/phv/m/n/10 size[]_[]t [] (robin[]_[]hood[]::unordered[]_[]flat[]_[]set$\OML /cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 & kmers, std[] [118]) (./initialise__max__bin__kmers_8hpp_source.tex) (./insert__into__ibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 1067) in paragraph at lines 17--19 \T1/phv/m/n/10 ::unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 const &kmers, size[]_[]t const n umber[]_[]of[]_[]bins, size[]_[]t const bin[]_[]index, ) (./insert__into__ibf_8hpp_source.tex [119]) (./loop__over__children_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./loop__over__children_8hpp_source.tex [120]) (./node__data_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./node__data_8hpp_source.tex [121]) (./parse__chopper__pack__header_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./parse__chopper__pack__header_8hpp_source.tex [122]) (./parse__chopper__pack__line_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./parse__chopper__pack__line_8hpp_source.tex) (./read__chopper__pack__file_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [123] Underfull \hbox (badness 2689) in paragraph at lines 15--16 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::string co nst ) (./read__chopper__pack__file_8hpp_source.tex) (./update__user__bins_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 Underfull \hbox (badness 1603) in paragraph at lines 15--16 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::vector$\O ML/cmm/m/it/10 <$ \T1/phv/m/n/10 int64[]_[]t $\OML/cmm/m/it/10 >$ ) (./update__user__bins_8hpp_source.tex [124]) (./index__factory_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./index__factory_8hpp_source.tex [125] [126]) (./raptor__build_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./raptor__build_8hpp_source.tex) (./store__index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./store__index_8hpp_source.tex [127]) (./dna4__traits_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./dna4__traits_8hpp_source.tex [128]) (./hierarchical__interleaved__bloom__filter_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./hierarchical__interleaved__bloom__filter_8hpp_source.tex [129] [130] [131] [132]) (./index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [133] Underfull \hbox (badness 10000) in paragraph at lines 31--33 []\T1/phv/m/n/10 using [] = hierarchical[]_[]interleaved[]_[]bloom[]_[]filter$\ OML/cmm/m/it/10 <$ \T1/phv/m/n/10 seqan3[]::data[]_[]layout[] ) (./index_8hpp_source.tex [134] [135] [136]) (./raptor_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./raptor_8hpp_source.tex) (./do__parallel_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [137]) (./do__parallel_8hpp_source.tex) (./load__index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [138]) (./load__index_8hpp_source.tex) (./search_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [139]) (./search_8hpp_source.tex) (./search__hibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__hibf_8hpp_source.tex) (./search__ibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [140]) (./search__ibf_8hpp_source.tex) (./search__multiple_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__multiple_8hpp_source.tex [141]) (./search__single_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./search__single_8hpp_source.tex [142] [143]) (./search__socks_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__socks_8hpp_source.tex [144]) (./sync__out_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./sync__out_8hpp_source.tex [145]) (./strong__types_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./strong__types_8hpp_source.tex) (./forward__strand__minimiser_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [146]) (./forward__strand__minimiser_8hpp_source.tex [147]) (./logspace_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [148]) (./logspace_8hpp_source.tex [149]) (./multiple__error__model_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./multiple__error__model_8hpp_source.tex) (./one__error__model_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [150]) (./one__error__model_8hpp_source.tex) (./one__indirect__error__model_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./one__indirect__error__model_8hpp_source.tex [151]) (./pascal__row_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./pascal__row_8hpp_source.tex) (./precompute__correction_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [152]) (./precompute__correction_8hpp_source.tex) (./precompute__threshold_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./precompute__threshold_8hpp_source.tex [153]) (./threshold_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./threshold_8hpp_source.tex [154]) (./threshold__parameters_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [155]) (./threshold__parameters_8hpp_source.tex) (./upgrade_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./upgrade_8hpp_source.tex [156]) (./upgrade__index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./upgrade__index_8hpp_source.tex [157]) (./_l_i_c_e_n_s_e_8md.tex) (./build__parsing_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./init__shared__meta_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./parse__bin__path_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [158]) (./search__parsing_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./upgrade__parsing_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [159]) (./build__from__minimiser_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./compute__minimiser_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./bin__size__in__bits_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [160]) (./chopper__build_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./compute__kmers_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [161]) (./construct__ibf_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 6927) in paragraph at lines 17--19 \T1/phv/m/n/10 seqan3[]::interleaved[]_[]bloom[]_[]filter [] (robin[]_[]hood[]: :unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML /cmm/m/it/10 >$ Underfull \hbox (badness 1205) in paragraph at lines 21--22 []\T1/phv/m/n/10 template seqan3[]::interleaved[]_[]bloom[]_[]filter [] ) (./create__ibfs__from__chopper__pack_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [162]) (./hierarchical__build_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--11 Underfull \hbox (badness 10000) in paragraph at lines 23--25 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[]hood[] Underfull \hbox (badness 10000) in paragraph at lines 25--26 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[]hood[] ) (./initialise__max__bin__kmers_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [163] Underfull \hbox (badness 1406) in paragraph at lines 18--20 \T1/phv/m/n/10 size[]_[]t [] (robin[]_[]hood[]::unordered[]_[]flat[]_[]set$\OML /cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 & kmers, std[] Underfull \hbox (badness 3189) in paragraph at lines 20--22 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[] ) (./insert__into__ibf_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 1067) in paragraph at lines 17--19 \T1/phv/m/n/10 ::unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 const &kmers, size[]_[]t const n umber[]_[]of[]_[]bins, size[]_[]t const bin[]_[]index, ) (./loop__over__children_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [164] Underfull \hbox (badness 10000) in paragraph at lines 20--22 []\T1/phv/m/n/10 template void [] (robin[]_[]hood[] Underfull \hbox (badness 10000) in paragraph at lines 22--23 []\T1/phv/m/n/10 template void [] (robin[]_[]hood[] ) (./parse__chopper__pack__header_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./parse__chopper__pack__line_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [165]) (./read__chopper__pack__file_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 2689) in paragraph at lines 17--19 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::string co nst Underfull \hbox (badness 1412) in paragraph at lines 19--21 []\T1/phv/m/n/10 template void [] (build[]_[]data$\OML/cmm/m/it/10 <$ Underfull \hbox (badness 10000) in paragraph at lines 21--22 []\T1/phv/m/n/10 template void [] (build[]_[]data$\OML/cmm/m/it/10 <$ ) (./update__user__bins_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [166] Underfull \hbox (badness 1603) in paragraph at lines 15--17 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::vector$\O ML/cmm/m/it/10 <$ \T1/phv/m/n/10 int64[]_[]t $\OML/cmm/m/it/10 >$ Underfull \hbox (badness 10000) in paragraph at lines 17--19 []\T1/phv/m/n/10 template void [] (build[]_[]data$\OML/cmm/m/it/10 <$ ) (./raptor__build_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 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in paragraph at lines 115--116 []\T1/phv/m/n/10 create_ibfs_from_chopper_pack$\OML/cmm/m/it/10 <$ \T1/phv/m/n/ 10 se-qan3::data_layout::compressed Overfull \hbox (60.06474pt too wide) in paragraph at lines 117--118 []\T1/phv/m/n/10 create_ibfs_from_chopper_pack$\OML/cmm/m/it/10 <$ \T1/phv/m/n/ 10 se-qan3::data_layout::uncompressed Underfull \hbox (badness 10000) in paragraph at lines 123--125 []| \T1/phv/m/n/10 raptor::hierarchical_interleaved_bloom_filter$\OML/cmm/m/it/ 10 <$ Underfull \hbox (badness 10000) in paragraph at lines 144--146 []| \T1/phv/m/n/10 raptor::hierarchical_interleaved_bloom_filter$\OML/cmm/m/it/ 10 <$ Underfull \hbox (badness 10000) in paragraph at lines 147--149 []| \T1/phv/m/n/10 raptor::hierarchical_interleaved_bloom_filter$\OML/cmm/m/it/ 10 <$ Underfull \hbox (badness 10000) in paragraph at lines 152--154 []| \T1/phv/m/n/10 rap-tor::threshold::forward_strand_minimiser, [][]56[][], Underfull \hbox (badness 10000) in paragraph at lines 186--187 []\T1/phv/m/n/10 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raptor::hierarchical_interleaved_bloom_filter$\OML/cmm/m/it/ 10 <$ Underfull \hbox (badness 10000) in paragraph at lines 1038--1040 []| \T1/phv/m/n/10 raptor::hierarchical_interleaved_bloom_filter$\OML/cmm/m/it/ 10 <$ [183]) (./refman.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on refman.pdf (201 pages, 641373 bytes). Transcript written on refman.log. make[2]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/doc/latex' make[1]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds' dh_auto_test cd obj-aarch64-linux-gnu && make -j8 test ARGS\+=--verbose ARGS\+=-j8 make[1]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j8 UpdateCTestConfiguration from :/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/DartConfiguration.tcl Test project /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu Constructing a list of tests gmake[2]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test' gmake[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/gmake -f CMakeFiles/Makefile2 test/CMakeFiles/api_test.dir/rule gmake[3]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/seqan-raptor-2.0.0.0.git.fecfbca+ds -B/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/CMakeFiles 57 /usr/bin/gmake -f CMakeFiles/Makefile2 test/CMakeFiles/api_test.dir/all gmake[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/gtest_project.dir/build.make test/CMakeFiles/gtest_project.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/CMakeFiles/gtest_project.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/gtest_project.dir/build.make test/CMakeFiles/gtest_project.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 1%] Creating directories for 'gtest_project' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test && /usr/bin/cmake -Dcfgdir= -P /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/tmp/gtest_project-mkdirs.cmake cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-stamp/gtest_project-mkdir [ 3%] No download step for 'gtest_project' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src && /usr/bin/cmake -E echo_append cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src && /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-stamp/gtest_project-download [ 5%] No update step for 'gtest_project' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E echo_append cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-stamp/gtest_project-update [ 7%] No patch step for 'gtest_project' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E echo_append cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-stamp/gtest_project-patch [ 8%] Performing configure step for 'gtest_project' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build && /usr/bin/cmake --no-warn-unused-cli -DCMAKE_C_COMPILER=/usr/bin/cc "-DCMAKE_C_FLAGS=-g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/" -DCMAKE_CXX_COMPILER=/usr/bin/c++ "-DCMAKE_CXX_FLAGS=-g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -w" -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_PREFIX=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu -DCMAKE_VERBOSE_MAKEFILE=ON -DBUILD_GMOCK=0 -DCMAKE_INSTALL_LIBDIR=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/lib/ "-GUnix Makefiles" /usr/src/googletest Not searching for unused variables given on the command line. Re-run cmake no build system arguments -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Python: /usr/bin/python3 (found version "3.11.2") found components: Interpreter -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Configuring done -- Generating done -- Build files have been written to: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build && /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-stamp/gtest_project-configure [ 10%] Performing build step for 'gtest_project' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build && /usr/bin/gmake gmake[6]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build' /usr/bin/cmake -S/usr/src/googletest -B/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build/CMakeFiles /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build' /usr/bin/gmake -f googletest/CMakeFiles/gtest.dir/build.make googletest/CMakeFiles/gtest.dir/depend gmake[8]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/googletest /usr/src/googletest/googletest /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest/CMakeFiles/gtest.dir/DependInfo.cmake --color= gmake[8]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build' /usr/bin/gmake -f googletest/CMakeFiles/gtest.dir/build.make googletest/CMakeFiles/gtest.dir/build gmake[8]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build' [ 25%] Building CXX object googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest && /usr/bin/c++ -I/usr/src/googletest/googletest/include -I/usr/src/googletest/googletest -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -w -Wall -Wshadow -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -MD -MT googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o -MF CMakeFiles/gtest.dir/src/gtest-all.cc.o.d -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /usr/src/googletest/googletest/src/gtest-all.cc [ 50%] Linking CXX static library ../lib/libgtest.a cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest && /usr/bin/cmake -P CMakeFiles/gtest.dir/cmake_clean_target.cmake cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1 /usr/bin/ar qc ../lib/libgtest.a "CMakeFiles/gtest.dir/src/gtest-all.cc.o" /usr/bin/ranlib ../lib/libgtest.a gmake[8]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build' [ 50%] Built target gtest /usr/bin/gmake -f googletest/CMakeFiles/gtest_main.dir/build.make googletest/CMakeFiles/gtest_main.dir/depend gmake[8]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/googletest /usr/src/googletest/googletest /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest/CMakeFiles/gtest_main.dir/DependInfo.cmake --color= gmake[8]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build' /usr/bin/gmake -f googletest/CMakeFiles/gtest_main.dir/build.make googletest/CMakeFiles/gtest_main.dir/build gmake[8]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build' [ 75%] Building CXX object googletest/CMakeFiles/gtest_main.dir/src/gtest_main.cc.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest && /usr/bin/c++ -isystem /usr/src/googletest/googletest/include -isystem /usr/src/googletest/googletest -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -w -Wall -Wshadow -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -DGTEST_HAS_PTHREAD=1 -MD -MT googletest/CMakeFiles/gtest_main.dir/src/gtest_main.cc.o -MF CMakeFiles/gtest_main.dir/src/gtest_main.cc.o.d -o CMakeFiles/gtest_main.dir/src/gtest_main.cc.o -c /usr/src/googletest/googletest/src/gtest_main.cc [100%] Linking CXX static library ../lib/libgtest_main.a cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest && /usr/bin/cmake -P CMakeFiles/gtest_main.dir/cmake_clean_target.cmake cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest_main.dir/link.txt --verbose=1 /usr/bin/ar qc ../lib/libgtest_main.a CMakeFiles/gtest_main.dir/src/gtest_main.cc.o /usr/bin/ranlib ../lib/libgtest_main.a gmake[8]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build' [100%] Built target gtest_main gmake[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build' /usr/bin/cmake -E cmake_progress_start /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build/CMakeFiles 0 gmake[6]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build && /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-stamp/gtest_project-build [ 12%] Performing install step for 'gtest_project' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build && /usr/bin/gmake install gmake[6]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build' /usr/bin/cmake -S/usr/src/googletest -B/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build/CMakeFiles /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build' /usr/bin/gmake -f googletest/CMakeFiles/gtest.dir/build.make googletest/CMakeFiles/gtest.dir/depend gmake[8]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/googletest /usr/src/googletest/googletest /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest/CMakeFiles/gtest.dir/DependInfo.cmake --color= Dependencies file "googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest/CMakeFiles/gtest.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target gtest gmake[8]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build' /usr/bin/gmake -f googletest/CMakeFiles/gtest.dir/build.make googletest/CMakeFiles/gtest.dir/build gmake[8]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build' gmake[8]: Nothing to be done for 'googletest/CMakeFiles/gtest.dir/build'. gmake[8]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build' [ 50%] Built target gtest /usr/bin/gmake -f googletest/CMakeFiles/gtest_main.dir/build.make googletest/CMakeFiles/gtest_main.dir/depend gmake[8]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/googletest /usr/src/googletest/googletest /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest/CMakeFiles/gtest_main.dir/DependInfo.cmake --color= Dependencies file "googletest/CMakeFiles/gtest_main.dir/src/gtest_main.cc.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest/CMakeFiles/gtest_main.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target gtest_main gmake[8]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build' /usr/bin/gmake -f googletest/CMakeFiles/gtest_main.dir/build.make googletest/CMakeFiles/gtest_main.dir/build gmake[8]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build' gmake[8]: Nothing to be done for 'googletest/CMakeFiles/gtest_main.dir/build'. gmake[8]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build' [100%] Built target gtest_main gmake[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build' /usr/bin/cmake -E cmake_progress_start /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build/CMakeFiles 0 /usr/bin/gmake -f CMakeFiles/Makefile2 preinstall gmake[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build' gmake[7]: Nothing to be done for 'preinstall'. gmake[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/lib/cmake/GTest/GTestTargets.cmake -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/lib/cmake/GTest/GTestTargets-none.cmake -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/lib/cmake/GTest/GTestConfigVersion.cmake -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/lib/cmake/GTest/GTestConfig.cmake -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/include -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/include/gtest -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/include/gtest/gtest_prod.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/include/gtest/gtest_pred_impl.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/include/gtest/gtest.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/include/gtest/gtest-typed-test.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/include/gtest/gtest-test-part.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/include/gtest/gtest-spi.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/include/gtest/gtest-printers.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/include/gtest/gtest-param-test.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/include/gtest/gtest-message.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/include/gtest/gtest-matchers.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/include/gtest/gtest-death-test.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/include/gtest/gtest-assertion-result.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/include/gtest/internal -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/include/gtest/internal/gtest-type-util.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/include/gtest/internal/gtest-string.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/include/gtest/internal/gtest-port.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/include/gtest/internal/gtest-port-arch.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/include/gtest/internal/gtest-param-util.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/include/gtest/internal/gtest-internal.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/include/gtest/internal/gtest-filepath.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/include/gtest/internal/gtest-death-test-internal.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/include/gtest/internal/custom -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/include/gtest/internal/custom/gtest.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/include/gtest/internal/custom/gtest-printers.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/include/gtest/internal/custom/gtest-port.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/include/gtest/internal/custom/README.md -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/lib/libgtest.a -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/lib/libgtest_main.a -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/lib/pkgconfig/gtest.pc -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/lib/pkgconfig/gtest_main.pc gmake[6]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-build && /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-stamp/gtest_project-install [ 14%] Completed 'gtest_project' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E make_directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/CMakeFiles cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/CMakeFiles/gtest_project-complete cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/gtest_project/src/gtest_project-stamp/gtest_project-done gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 14%] Built target gtest_project /usr/bin/gmake -f CMakeFiles/chopper_project.dir/build.make CMakeFiles/chopper_project.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/CMakeFiles/chopper_project.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f CMakeFiles/chopper_project.dir/build.make CMakeFiles/chopper_project.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' gmake[5]: Nothing to be done for 'CMakeFiles/chopper_project.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 26%] Built target chopper_project /usr/bin/gmake -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/argument_parsing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/DependInfo.cmake --color= Dependencies file "src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compiler_depend.internal". Dependencies file "src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compiler_depend.internal". Dependencies file "src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compiler_depend.internal". Dependencies file "src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compiler_depend.internal". Dependencies file "src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compiler_depend.internal". Dependencies file "src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target raptor_argument_parsing gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' gmake[5]: Nothing to be done for 'src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 38%] Built target raptor_argument_parsing /usr/bin/gmake -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/CMakeFiles/raptor_build.dir/DependInfo.cmake --color= Dependencies file "src/build/CMakeFiles/raptor_build.dir/build_from_minimiser.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/CMakeFiles/raptor_build.dir/compiler_depend.internal". Dependencies file "src/build/CMakeFiles/raptor_build.dir/compute_minimiser.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/CMakeFiles/raptor_build.dir/compiler_depend.internal". Dependencies file "src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/CMakeFiles/raptor_build.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target raptor_build gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' gmake[5]: Nothing to be done for 'src/build/CMakeFiles/raptor_build.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 45%] Built target raptor_build /usr/bin/gmake -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/DependInfo.cmake --color= Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/initialise_max_bin_kmers.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target raptor_build_hibf gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' gmake[5]: Nothing to be done for 'src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 70%] Built target raptor_build_hibf /usr/bin/gmake -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/search /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/search/CMakeFiles/raptor_search.dir/DependInfo.cmake --color= Dependencies file "src/search/CMakeFiles/raptor_search.dir/raptor_search.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/search/CMakeFiles/raptor_search.dir/compiler_depend.internal". Dependencies file "src/search/CMakeFiles/raptor_search.dir/search_hibf.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/search/CMakeFiles/raptor_search.dir/compiler_depend.internal". Dependencies file "src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/search/CMakeFiles/raptor_search.dir/compiler_depend.internal". Dependencies file "src/search/CMakeFiles/raptor_search.dir/search_multiple.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/search/CMakeFiles/raptor_search.dir/compiler_depend.internal". Dependencies file "src/search/CMakeFiles/raptor_search.dir/search_socks.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/search/CMakeFiles/raptor_search.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target raptor_search gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' gmake[5]: Nothing to be done for 'src/search/CMakeFiles/raptor_search.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 80%] Built target raptor_search /usr/bin/gmake -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/threshold /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/threshold/CMakeFiles/raptor_threshold.dir/DependInfo.cmake --color= Dependencies file "src/threshold/CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/threshold/CMakeFiles/raptor_threshold.dir/compiler_depend.internal". Dependencies file "src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/threshold/CMakeFiles/raptor_threshold.dir/compiler_depend.internal". Dependencies file "src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/threshold/CMakeFiles/raptor_threshold.dir/compiler_depend.internal". Dependencies file "src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/threshold/CMakeFiles/raptor_threshold.dir/compiler_depend.internal". Dependencies file "src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/threshold/CMakeFiles/raptor_threshold.dir/compiler_depend.internal". Dependencies file "src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/threshold/CMakeFiles/raptor_threshold.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target raptor_threshold gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' gmake[5]: Nothing to be done for 'src/threshold/CMakeFiles/raptor_threshold.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 92%] Built target raptor_threshold /usr/bin/gmake -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/upgrade /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/upgrade /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/upgrade/CMakeFiles/raptor_upgrade.dir/DependInfo.cmake --color= Dependencies file "src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/upgrade/CMakeFiles/raptor_upgrade.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target raptor_upgrade gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' gmake[5]: Nothing to be done for 'src/upgrade/CMakeFiles/raptor_upgrade.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 96%] Built target raptor_upgrade /usr/bin/gmake -f test/api/CMakeFiles/issue_142.dir/build.make test/api/CMakeFiles/issue_142.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/api /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/api /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/api/CMakeFiles/issue_142.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f test/api/CMakeFiles/issue_142.dir/build.make test/api/CMakeFiles/issue_142.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 98%] Building CXX object test/api/CMakeFiles/issue_142.dir/issue_142.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/api && /usr/bin/c++ -DBINDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/api/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/vendor/googletest/googletest/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/api/CMakeFiles/issue_142.dir/issue_142.cpp.o -MF CMakeFiles/issue_142.dir/issue_142.cpp.o.d -o CMakeFiles/issue_142.dir/issue_142.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/api/issue_142.cpp [100%] Linking CXX executable issue_142 cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/issue_142.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/issue_142.dir/issue_142.cpp.o -o issue_142 ../../lib/libgtest.a ../../lib/libgtest_main.a ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lrt ../../lib/libchopper_count_lib.a ../../lib/libchopper_layout_lib.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [100%] Built target issue_142 /usr/bin/gmake -f test/CMakeFiles/api_test.dir/build.make test/CMakeFiles/api_test.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/CMakeFiles/api_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/api_test.dir/build.make test/CMakeFiles/api_test.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' gmake[5]: Nothing to be done for 'test/CMakeFiles/api_test.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [100%] Built target api_test gmake[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/CMakeFiles 0 gmake[3]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' gmake[2]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test' gmake[2]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test' gmake[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/gmake -f CMakeFiles/Makefile2 test/CMakeFiles/cli_test.dir/rule gmake[3]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/seqan-raptor-2.0.0.0.git.fecfbca+ds -B/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/CMakeFiles 79 /usr/bin/gmake -f CMakeFiles/Makefile2 test/CMakeFiles/cli_test.dir/all gmake[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/gtest_project.dir/build.make test/CMakeFiles/gtest_project.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/CMakeFiles/gtest_project.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/gtest_project.dir/build.make test/CMakeFiles/gtest_project.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' gmake[5]: Nothing to be done for 'test/CMakeFiles/gtest_project.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 10%] Built target gtest_project /usr/bin/gmake -f CMakeFiles/chopper_project.dir/build.make CMakeFiles/chopper_project.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/CMakeFiles/chopper_project.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f CMakeFiles/chopper_project.dir/build.make CMakeFiles/chopper_project.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' gmake[5]: Nothing to be done for 'CMakeFiles/chopper_project.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 18%] Built target chopper_project /usr/bin/gmake -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/upgrade /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/upgrade /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/upgrade/CMakeFiles/raptor_upgrade.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' gmake[5]: Nothing to be done for 'src/upgrade/CMakeFiles/raptor_upgrade.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 21%] Built target raptor_upgrade /usr/bin/gmake -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/argument_parsing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' gmake[5]: Nothing to be done for 'src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 30%] Built target raptor_argument_parsing /usr/bin/gmake -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/CMakeFiles/raptor_build.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' gmake[5]: Nothing to be done for 'src/build/CMakeFiles/raptor_build.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 35%] Built target raptor_build /usr/bin/gmake -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' gmake[5]: Nothing to be done for 'src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 53%] Built target raptor_build_hibf /usr/bin/gmake -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/search /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/search/CMakeFiles/raptor_search.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' gmake[5]: Nothing to be done for 'src/search/CMakeFiles/raptor_search.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 60%] Built target raptor_search /usr/bin/gmake -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/threshold /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/threshold/CMakeFiles/raptor_threshold.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' gmake[5]: Nothing to be done for 'src/threshold/CMakeFiles/raptor_threshold.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 69%] Built target raptor_threshold /usr/bin/gmake -f src/CMakeFiles/raptor.dir/build.make src/CMakeFiles/raptor.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/CMakeFiles/raptor.dir/DependInfo.cmake --color= Dependencies file "src/CMakeFiles/raptor.dir/raptor.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/src/CMakeFiles/raptor.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target raptor gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f src/CMakeFiles/raptor.dir/build.make src/CMakeFiles/raptor.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' gmake[5]: Nothing to be done for 'src/CMakeFiles/raptor.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 72%] Built target raptor /usr/bin/gmake -f test/cli/upgrade/CMakeFiles/cli_upgrade_test.dir/build.make test/cli/upgrade/CMakeFiles/cli_upgrade_test.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/upgrade /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/upgrade /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/upgrade/CMakeFiles/cli_upgrade_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f test/cli/upgrade/CMakeFiles/cli_upgrade_test.dir/build.make test/cli/upgrade/CMakeFiles/cli_upgrade_test.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 73%] Building CXX object test/cli/upgrade/CMakeFiles/cli_upgrade_test.dir/cli_upgrade_test.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/upgrade && /usr/bin/c++ -DBINDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/upgrade/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/vendor/googletest/googletest/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/upgrade/CMakeFiles/cli_upgrade_test.dir/cli_upgrade_test.cpp.o -MF CMakeFiles/cli_upgrade_test.dir/cli_upgrade_test.cpp.o.d -o CMakeFiles/cli_upgrade_test.dir/cli_upgrade_test.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/upgrade/cli_upgrade_test.cpp [ 74%] Linking CXX executable cli_upgrade_test cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/upgrade && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_upgrade_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_upgrade_test.dir/cli_upgrade_test.cpp.o -o cli_upgrade_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 74%] Built target cli_upgrade_test /usr/bin/gmake -f test/cli/argument_parsing/CMakeFiles/cli_options_test.dir/build.make test/cli/argument_parsing/CMakeFiles/cli_options_test.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/argument_parsing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/argument_parsing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/argument_parsing/CMakeFiles/cli_options_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f test/cli/argument_parsing/CMakeFiles/cli_options_test.dir/build.make test/cli/argument_parsing/CMakeFiles/cli_options_test.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 75%] Building CXX object test/cli/argument_parsing/CMakeFiles/cli_options_test.dir/cli_options_test.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/argument_parsing && /usr/bin/c++ -DBINDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/argument_parsing/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/vendor/googletest/googletest/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/argument_parsing/CMakeFiles/cli_options_test.dir/cli_options_test.cpp.o -MF CMakeFiles/cli_options_test.dir/cli_options_test.cpp.o.d -o CMakeFiles/cli_options_test.dir/cli_options_test.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/argument_parsing/cli_options_test.cpp [ 77%] Linking CXX executable cli_options_test cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/argument_parsing && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_options_test.dir/cli_options_test.cpp.o -o cli_options_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 77%] Built target cli_options_test /usr/bin/gmake -f test/cli/build/CMakeFiles/cli_build_hibf_chopper_test.dir/build.make test/cli/build/CMakeFiles/cli_build_hibf_chopper_test.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/build/CMakeFiles/cli_build_hibf_chopper_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f test/cli/build/CMakeFiles/cli_build_hibf_chopper_test.dir/build.make test/cli/build/CMakeFiles/cli_build_hibf_chopper_test.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 78%] Building CXX object test/cli/build/CMakeFiles/cli_build_hibf_chopper_test.dir/cli_build_hibf_chopper_test.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/build && /usr/bin/c++ -DBINDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/build/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/vendor/googletest/googletest/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/build/CMakeFiles/cli_build_hibf_chopper_test.dir/cli_build_hibf_chopper_test.cpp.o -MF CMakeFiles/cli_build_hibf_chopper_test.dir/cli_build_hibf_chopper_test.cpp.o.d -o CMakeFiles/cli_build_hibf_chopper_test.dir/cli_build_hibf_chopper_test.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/build/cli_build_hibf_chopper_test.cpp [ 79%] Linking CXX executable cli_build_hibf_chopper_test cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_build_hibf_chopper_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_build_hibf_chopper_test.dir/cli_build_hibf_chopper_test.cpp.o -o cli_build_hibf_chopper_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 79%] Built target cli_build_hibf_chopper_test /usr/bin/gmake -f test/cli/build/CMakeFiles/cli_build_hibf_test.dir/build.make test/cli/build/CMakeFiles/cli_build_hibf_test.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/build/CMakeFiles/cli_build_hibf_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f test/cli/build/CMakeFiles/cli_build_hibf_test.dir/build.make test/cli/build/CMakeFiles/cli_build_hibf_test.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 81%] Building CXX object test/cli/build/CMakeFiles/cli_build_hibf_test.dir/cli_build_hibf_test.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/build && /usr/bin/c++ -DBINDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/build/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/vendor/googletest/googletest/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/build/CMakeFiles/cli_build_hibf_test.dir/cli_build_hibf_test.cpp.o -MF CMakeFiles/cli_build_hibf_test.dir/cli_build_hibf_test.cpp.o.d -o CMakeFiles/cli_build_hibf_test.dir/cli_build_hibf_test.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/build/cli_build_hibf_test.cpp [ 82%] Linking CXX executable cli_build_hibf_test cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_build_hibf_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_build_hibf_test.dir/cli_build_hibf_test.cpp.o -o cli_build_hibf_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 82%] Built target cli_build_hibf_test /usr/bin/gmake -f test/cli/build/CMakeFiles/cli_build_ibf_compressed_test.dir/build.make test/cli/build/CMakeFiles/cli_build_ibf_compressed_test.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/build/CMakeFiles/cli_build_ibf_compressed_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f test/cli/build/CMakeFiles/cli_build_ibf_compressed_test.dir/build.make test/cli/build/CMakeFiles/cli_build_ibf_compressed_test.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 83%] Building CXX object test/cli/build/CMakeFiles/cli_build_ibf_compressed_test.dir/cli_build_ibf_compressed_test.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/build && /usr/bin/c++ -DBINDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/build/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/vendor/googletest/googletest/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/build/CMakeFiles/cli_build_ibf_compressed_test.dir/cli_build_ibf_compressed_test.cpp.o -MF CMakeFiles/cli_build_ibf_compressed_test.dir/cli_build_ibf_compressed_test.cpp.o.d -o CMakeFiles/cli_build_ibf_compressed_test.dir/cli_build_ibf_compressed_test.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/build/cli_build_ibf_compressed_test.cpp [ 84%] Linking CXX executable cli_build_ibf_compressed_test cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_build_ibf_compressed_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_build_ibf_compressed_test.dir/cli_build_ibf_compressed_test.cpp.o -o cli_build_ibf_compressed_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 84%] Built target cli_build_ibf_compressed_test /usr/bin/gmake -f test/cli/build/CMakeFiles/cli_build_ibf_partitioned_test.dir/build.make test/cli/build/CMakeFiles/cli_build_ibf_partitioned_test.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/build/CMakeFiles/cli_build_ibf_partitioned_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f test/cli/build/CMakeFiles/cli_build_ibf_partitioned_test.dir/build.make test/cli/build/CMakeFiles/cli_build_ibf_partitioned_test.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 86%] Building CXX object test/cli/build/CMakeFiles/cli_build_ibf_partitioned_test.dir/cli_build_ibf_partitioned_test.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/build && /usr/bin/c++ -DBINDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/build/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/vendor/googletest/googletest/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/build/CMakeFiles/cli_build_ibf_partitioned_test.dir/cli_build_ibf_partitioned_test.cpp.o -MF CMakeFiles/cli_build_ibf_partitioned_test.dir/cli_build_ibf_partitioned_test.cpp.o.d -o CMakeFiles/cli_build_ibf_partitioned_test.dir/cli_build_ibf_partitioned_test.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/build/cli_build_ibf_partitioned_test.cpp [ 87%] Linking CXX executable cli_build_ibf_partitioned_test cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_build_ibf_partitioned_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_build_ibf_partitioned_test.dir/cli_build_ibf_partitioned_test.cpp.o -o cli_build_ibf_partitioned_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 87%] Built target cli_build_ibf_partitioned_test /usr/bin/gmake -f test/cli/build/CMakeFiles/cli_build_ibf_test.dir/build.make test/cli/build/CMakeFiles/cli_build_ibf_test.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/build/CMakeFiles/cli_build_ibf_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f test/cli/build/CMakeFiles/cli_build_ibf_test.dir/build.make test/cli/build/CMakeFiles/cli_build_ibf_test.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 88%] Building CXX object test/cli/build/CMakeFiles/cli_build_ibf_test.dir/cli_build_ibf_test.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/build && /usr/bin/c++ -DBINDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/build/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/vendor/googletest/googletest/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/build/CMakeFiles/cli_build_ibf_test.dir/cli_build_ibf_test.cpp.o -MF CMakeFiles/cli_build_ibf_test.dir/cli_build_ibf_test.cpp.o.d -o CMakeFiles/cli_build_ibf_test.dir/cli_build_ibf_test.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/build/cli_build_ibf_test.cpp [ 89%] Linking CXX executable cli_build_ibf_test cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_build_ibf_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_build_ibf_test.dir/cli_build_ibf_test.cpp.o -o cli_build_ibf_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 89%] Built target cli_build_ibf_test /usr/bin/gmake -f test/cli/search/CMakeFiles/cli_search_hibf_test.dir/build.make test/cli/search/CMakeFiles/cli_search_hibf_test.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/search /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/search /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/search/CMakeFiles/cli_search_hibf_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f test/cli/search/CMakeFiles/cli_search_hibf_test.dir/build.make test/cli/search/CMakeFiles/cli_search_hibf_test.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 91%] Building CXX object test/cli/search/CMakeFiles/cli_search_hibf_test.dir/cli_search_hibf_test.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/search && /usr/bin/c++ -DBINDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/search/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/vendor/googletest/googletest/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/search/CMakeFiles/cli_search_hibf_test.dir/cli_search_hibf_test.cpp.o -MF CMakeFiles/cli_search_hibf_test.dir/cli_search_hibf_test.cpp.o.d -o CMakeFiles/cli_search_hibf_test.dir/cli_search_hibf_test.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/search/cli_search_hibf_test.cpp [ 92%] Linking CXX executable cli_search_hibf_test cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_search_hibf_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_search_hibf_test.dir/cli_search_hibf_test.cpp.o -o cli_search_hibf_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 92%] Built target cli_search_hibf_test /usr/bin/gmake -f test/cli/search/CMakeFiles/cli_search_hibf_preprocessing_test.dir/build.make test/cli/search/CMakeFiles/cli_search_hibf_preprocessing_test.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/search /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/search /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/search/CMakeFiles/cli_search_hibf_preprocessing_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f test/cli/search/CMakeFiles/cli_search_hibf_preprocessing_test.dir/build.make test/cli/search/CMakeFiles/cli_search_hibf_preprocessing_test.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 93%] Building CXX object test/cli/search/CMakeFiles/cli_search_hibf_preprocessing_test.dir/cli_search_hibf_preprocessing_test.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/search && /usr/bin/c++ -DBINDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/search/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/vendor/googletest/googletest/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/search/CMakeFiles/cli_search_hibf_preprocessing_test.dir/cli_search_hibf_preprocessing_test.cpp.o -MF CMakeFiles/cli_search_hibf_preprocessing_test.dir/cli_search_hibf_preprocessing_test.cpp.o.d -o CMakeFiles/cli_search_hibf_preprocessing_test.dir/cli_search_hibf_preprocessing_test.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/search/cli_search_hibf_preprocessing_test.cpp [ 94%] Linking CXX executable cli_search_hibf_preprocessing_test cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_search_hibf_preprocessing_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_search_hibf_preprocessing_test.dir/cli_search_hibf_preprocessing_test.cpp.o -o cli_search_hibf_preprocessing_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 94%] Built target cli_search_hibf_preprocessing_test /usr/bin/gmake -f test/cli/search/CMakeFiles/cli_search_ibf_preprocessing_test.dir/build.make test/cli/search/CMakeFiles/cli_search_ibf_preprocessing_test.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/search /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/search /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/search/CMakeFiles/cli_search_ibf_preprocessing_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f test/cli/search/CMakeFiles/cli_search_ibf_preprocessing_test.dir/build.make test/cli/search/CMakeFiles/cli_search_ibf_preprocessing_test.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 96%] Building CXX object test/cli/search/CMakeFiles/cli_search_ibf_preprocessing_test.dir/cli_search_ibf_preprocessing_test.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/search && /usr/bin/c++ -DBINDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/search/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/vendor/googletest/googletest/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/search/CMakeFiles/cli_search_ibf_preprocessing_test.dir/cli_search_ibf_preprocessing_test.cpp.o -MF CMakeFiles/cli_search_ibf_preprocessing_test.dir/cli_search_ibf_preprocessing_test.cpp.o.d -o CMakeFiles/cli_search_ibf_preprocessing_test.dir/cli_search_ibf_preprocessing_test.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/search/cli_search_ibf_preprocessing_test.cpp [ 97%] Linking CXX executable cli_search_ibf_preprocessing_test cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_search_ibf_preprocessing_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_search_ibf_preprocessing_test.dir/cli_search_ibf_preprocessing_test.cpp.o -o cli_search_ibf_preprocessing_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 97%] Built target cli_search_ibf_preprocessing_test /usr/bin/gmake -f test/cli/search/CMakeFiles/cli_search_ibf_test.dir/build.make test/cli/search/CMakeFiles/cli_search_ibf_test.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/search /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/search /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/search/CMakeFiles/cli_search_ibf_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f test/cli/search/CMakeFiles/cli_search_ibf_test.dir/build.make test/cli/search/CMakeFiles/cli_search_ibf_test.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [ 98%] Building CXX object test/cli/search/CMakeFiles/cli_search_ibf_test.dir/cli_search_ibf_test.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/search && /usr/bin/c++ -DBINDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/search/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/vendor/googletest/googletest/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/search/CMakeFiles/cli_search_ibf_test.dir/cli_search_ibf_test.cpp.o -MF CMakeFiles/cli_search_ibf_test.dir/cli_search_ibf_test.cpp.o.d -o CMakeFiles/cli_search_ibf_test.dir/cli_search_ibf_test.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/search/cli_search_ibf_test.cpp [100%] Linking CXX executable cli_search_ibf_test cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_search_ibf_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_search_ibf_test.dir/cli_search_ibf_test.cpp.o -o cli_search_ibf_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [100%] Built target cli_search_ibf_test /usr/bin/gmake -f test/CMakeFiles/cli_test.dir/build.make test/CMakeFiles/cli_test.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/CMakeFiles/cli_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/cli_test.dir/build.make test/CMakeFiles/cli_test.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' gmake[5]: Nothing to be done for 'test/CMakeFiles/cli_test.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' [100%] Built target cli_test gmake[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/CMakeFiles 0 gmake[3]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' gmake[2]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test' Error: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/header is not a directory Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: test/api/issue_142 1: Test command: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/api/issue_142 1: Working Directory: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/api 1: Test timeout computed to be: 10000000 test 2 Start 2: test/cli/argument_parsing/cli_options_test 2: Test command: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/argument_parsing/cli_options_test 2: Working Directory: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/argument_parsing 2: Test timeout computed to be: 10000000 test 3 Start 3: test/cli/build/cli_build_hibf_chopper_test 3: Test command: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/build/cli_build_hibf_chopper_test 3: Working Directory: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/build 3: Test timeout computed to be: 10000000 test 4 Start 4: test/cli/build/cli_build_hibf_test 4: Test command: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/build/cli_build_hibf_test 4: Working Directory: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/build 4: Test timeout computed to be: 10000000 test 5 Start 5: test/cli/build/cli_build_ibf_compressed_test 5: Test command: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/build/cli_build_ibf_compressed_test 5: Working Directory: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/build 5: Test timeout computed to be: 10000000 test 6 Start 6: test/cli/build/cli_build_ibf_partitioned_test 6: Test command: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/build/cli_build_ibf_partitioned_test 6: Working Directory: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/build 6: Test timeout computed to be: 10000000 test 7 Start 7: test/cli/build/cli_build_ibf_test 7: Test command: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/build/cli_build_ibf_test 7: Working Directory: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/build 7: Test timeout computed to be: 10000000 test 8 Start 8: test/cli/search/cli_search_hibf_test 8: Test command: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/search/cli_search_hibf_test 8: Working Directory: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/search 8: Test timeout computed to be: 10000000 1: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 1: [==========] Running 1 test from 1 test suite. 1: [----------] Global test environment set-up. 1: [----------] 1 test from issue 1: [ RUN ] issue.142 1: [ OK ] issue.142 (20 ms) 1: [----------] 1 test from issue (20 ms total) 1: 1: [----------] Global test environment tear-down 1: [==========] 1 test from 1 test suite ran. (20 ms total) 1: [ PASSED ] 1 test. 2: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 2: [==========] Running 28 tests from 4 test suites. 2: [----------] Global test environment set-up. 2: [----------] 3 tests from argparse_main 2: [ RUN ] argparse_main.no_options 2: [ OK ] argparse_main.no_options (20 ms) 2: [ RUN ] argparse_main.no_subparser 2: [ OK ] argparse_main.no_subparser (28 ms) 2: [ RUN ] argparse_main.unknown_option 3: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 3: [==========] Running 1 test from 1 test suite. 3: [----------] Global test environment set-up. 3: [----------] 1 test from build_hibf_chopper 3: [ RUN ] build_hibf_chopper.pipeline 4: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 4: [==========] Running 25 tests from 2 test suites. 4: [----------] Global test environment set-up. 4: [----------] 1 test from build_hibf 4: [ RUN ] build_hibf.three_levels 5: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 5: [==========] Running 49 tests from 2 test suites. 5: [----------] Global test environment set-up. 5: [----------] 1 test from build_ibf_compressed 5: [ RUN ] build_ibf_compressed.wrong_compression 5: [ OK ] build_ibf_compressed.wrong_compression (0 ms) 5: [----------] 1 test from build_ibf_compressed (0 ms total) 5: 5: [----------] 48 tests from build_ibf_compressed_suite/build_ibf_compressed 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel0_error 6: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 6: [==========] Running 25 tests from 2 test suites. 6: [----------] Global test environment set-up. 6: [----------] 1 test from build_ibf_partitioned 6: [ RUN ] build_ibf_partitioned.pipeline_misc 7: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 7: [==========] Running 36 tests from 1 test suite. 7: [----------] Global test environment set-up. 7: [----------] 36 tests from build_ibf_suite/build_ibf 7: [ RUN ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_parallel 1/12 Test #1: test/api/issue_142 ................................... Passed 0.08 sec test 9 Start 9: test/cli/search/cli_search_hibf_preprocessing_test 9: Test command: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/search/cli_search_hibf_preprocessing_test 9: Working Directory: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/search 9: Test timeout computed to be: 10000000 2: [ OK ] argparse_main.unknown_option (22 ms) 2: [----------] 3 tests from argparse_main (71 ms total) 2: 2: [----------] 16 tests from argparse_build 2: [ RUN ] argparse_build.no_options 8: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 8: [==========] Running 37 tests from 2 test suites. 8: [----------] Global test environment set-up. 8: [----------] 1 test from search_hibf 8: [ RUN ] search_hibf.three_levels 9: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 9: [==========] Running 48 tests from 1 test suite. 9: [----------] Global test environment set-up. 9: [----------] 48 tests from search_hibf_preprocessing_suite/search_hibf_preprocessing 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel0_error 7: [ OK ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_parallel (60 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_serial 7: [ OK ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_serial (39 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_parallel 2: [ OK ] argparse_build.no_options (97 ms) 2: [ RUN ] argparse_build.input_missing 8: [ OK ] search_hibf.three_levels (102 ms) 8: [----------] 1 test from search_hibf (102 ms total) 8: 8: [----------] 36 tests from search_hibf_suite/search_hibf 8: [ RUN ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_0_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel0_error (137 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel1_error 7: [ OK ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_parallel (56 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_serial 3: [ OK ] build_hibf_chopper.pipeline (194 ms) 3: [----------] 1 test from build_hibf_chopper (194 ms total) 3: 3: [----------] Global test environment tear-down 3: [==========] 1 test from 1 test suite ran. (194 ms total) 3: [ PASSED ] 1 test. 2: [ OK ] argparse_build.input_missing (47 ms) 2: [ RUN ] argparse_build.input_invalid 4: [ OK ] build_hibf.three_levels (198 ms) 4: [----------] 1 test from build_hibf (198 ms total) 4: 4: [----------] 24 tests from build_hibf_suite/build_hibf 4: [ RUN ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_parallel 2/12 Test #3: test/cli/build/cli_build_hibf_chopper_test ........... Passed 0.22 sec test 10 Start 10: test/cli/search/cli_search_ibf_preprocessing_test 10: Test command: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/search/cli_search_ibf_preprocessing_test 10: Working Directory: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/search 10: Test timeout computed to be: 10000000 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel1_error (56 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial0_error 2: [ OK ] argparse_build.input_invalid (24 ms) 2: [ RUN ] argparse_build.output_missing 10: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 10: [==========] Running 49 tests from 2 test suites. 10: [----------] Global test environment set-up. 10: [----------] 1 test from search_ibf_preprocessing 10: [ RUN ] search_ibf_preprocessing.pipeline_compressed_index 8: [ OK ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_0_error (73 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_1_error 4: [ OK ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_parallel (33 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_serial 7: [ OK ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_serial (51 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_parallel 2: [ OK ] argparse_build.output_missing (32 ms) 2: [ RUN ] argparse_build.directory_missing 4: [ OK ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_serial (36 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_parallel 2: [ OK ] argparse_build.directory_missing (28 ms) 2: [ RUN ] argparse_build.alias 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel0_error (222 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel1_error 4: [ OK ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_parallel (35 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_serial 7: [ OK ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_parallel (62 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_serial 8: [ OK ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_1_error (92 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_0_error 2: [ OK ] argparse_build.alias (62 ms) 2: [ RUN ] argparse_build.size_missing 4: [ OK ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_serial (55 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_parallel 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial0_error (173 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial1_error 2: [ OK ] argparse_build.size_missing (70 ms) 2: [ RUN ] argparse_build.size_wrong_space 7: [ OK ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_serial (109 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_parallel 2: [ OK ] argparse_build.size_wrong_space (29 ms) 2: [ RUN ] argparse_build.size_wrong_suffix 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel1_error (169 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial0_error 4: [ OK ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_parallel (110 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_serial 10: [ OK ] search_ibf_preprocessing.pipeline_compressed_index (265 ms) 10: [----------] 1 test from search_ibf_preprocessing (265 ms total) 10: 10: [----------] 48 tests from search_ibf_preprocessing_suite/search_ibf_preprocessing 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_parallel0_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial1_error (110 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel0_error 2: [ OK ] argparse_build.size_wrong_suffix (62 ms) 2: [ RUN ] argparse_build.kmer_window 7: [ OK ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_parallel (125 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_serial 8: [ OK ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_0_error (230 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_1_error 2: [ OK ] argparse_build.kmer_window (48 ms) 2: [ RUN ] argparse_build.kmer_shape 4: [ OK ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_serial (91 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_parallel 2: [ OK ] argparse_build.kmer_shape (23 ms) 2: [ RUN ] argparse_build.zero_threads 2: [ OK ] argparse_build.zero_threads (44 ms) 2: [ RUN ] argparse_build.no_bins_in_file 7: [ OK ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_serial (106 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_parallel 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial0_error (190 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial1_error 4: [ OK ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_parallel (95 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_serial 2: [ OK ] argparse_build.no_bins_in_file (58 ms) 2: [ RUN ] argparse_build.empty_file_in_bin 6: [ OK ] build_ibf_partitioned.pipeline_misc (688 ms) 6: [----------] 1 test from build_ibf_partitioned (688 ms total) 6: 6: [----------] 24 tests from build_ibf_partitioned_suite/build_ibf_partitioned 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partscompressed 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_parallel0_error (244 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_parallel1_error 4: [ OK ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_serial (75 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_parallel 2: [ OK ] argparse_build.empty_file_in_bin (64 ms) 2: [ RUN ] argparse_build.mixed_input 8: [ OK ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_1_error (212 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_0_error 7: [ OK ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_parallel (134 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_serial 8: [ OK ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_0_error (34 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial1_error (148 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel0_error 2: [ OK ] argparse_build.mixed_input (75 ms) 2: [ RUN ] argparse_build.wrong_parts 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel0_error (343 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_parallel1_error (159 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_serial0_error 2: [ OK ] argparse_build.wrong_parts (84 ms) 2: [----------] 16 tests from argparse_build (854 ms total) 2: 2: [----------] 8 tests from argparse_search 2: [ RUN ] argparse_search.no_options 4: [ OK ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_parallel (185 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_serial 8: [ OK ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_1_error (144 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/64_bins_23_window_0_error 2: [ OK ] argparse_search.no_options (36 ms) 2: [ RUN ] argparse_search.ibf_missing 2: [ OK ] argparse_search.ibf_missing (38 ms) 2: [ RUN ] argparse_search.ibf_wrong 7: [ OK ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_serial (211 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_parallel 2: [ OK ] argparse_search.ibf_wrong (24 ms) 2: [ RUN ] argparse_search.query_missing 2: [ OK ] argparse_search.query_missing (47 ms) 2: [ RUN ] argparse_search.query_wrong 2: [ OK ] argparse_search.query_wrong (48 ms) 2: [ RUN ] argparse_search.output_missing 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel1_error (273 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_serial0_error 7: [ OK ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_parallel (122 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_serial 8: [ OK ] search_hibf_suite/search_hibf.with_error/64_bins_23_window_0_error (187 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/64_bins_23_window_1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel0_error (330 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_serial0_error (241 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_serial1_error 2: [ OK ] argparse_search.output_missing (46 ms) 2: [ RUN ] argparse_search.old_index 4: [ OK ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_serial (263 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_parallel 7: [ OK ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_serial (111 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_parallel 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partscompressed (514 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partsuncompressed 2: [ OK ] argparse_search.old_index (87 ms) 2: [ RUN ] argparse_search.temporary_warning 7: [ OK ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_parallel (57 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_serial 4: [ OK ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_parallel (122 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_serial 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_serial1_error (180 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel0_error 2: [ OK ] argparse_search.temporary_warning (96 ms) 2: [----------] 8 tests from argparse_search (427 ms total) 2: 2: [----------] 1 test from argparse_upgrade 2: [ RUN ] argparse_upgrade.kmer_window 2: [ OK ] argparse_upgrade.kmer_window (10 ms) 2: [----------] 1 test from argparse_upgrade (10 ms total) 2: 2: [----------] Global test environment tear-down 2: [==========] 28 tests from 4 test suites ran. (1363 ms total) 2: [ PASSED ] 28 tests. 3/12 Test #2: test/cli/argument_parsing/cli_options_test ........... Passed 1.37 sec test 11 Start 11: test/cli/search/cli_search_ibf_test 11: Test command: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/search/cli_search_ibf_test 11: Working Directory: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/search 11: Test timeout computed to be: 10000000 7: [ OK ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_serial (66 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_parallel 8: [ OK ] search_hibf_suite/search_hibf.with_error/64_bins_23_window_1_error (225 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/128_bins_19_window_0_error 7: [ OK ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_parallel (35 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_serial 11: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 11: [==========] Running 49 tests from 2 test suites. 11: [----------] Global test environment set-up. 11: [----------] 1 test from search_ibf 11: [ RUN ] search_ibf.cache_thresholds 7: [ OK ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_serial (80 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_parallel 8: [ OK ] search_hibf_suite/search_hibf.with_error/128_bins_19_window_0_error (122 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/128_bins_19_window_1_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_serial0_error (382 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_serial1_error 4: [ OK ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_serial (216 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_parallel 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel1_error (411 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial0_error 7: [ OK ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_parallel (87 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_serial 4: [ OK ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_parallel (35 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_serial 8: [ OK ] search_hibf_suite/search_hibf.with_error/128_bins_19_window_1_error (99 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_0_error 4: [ OK ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_serial (54 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_parallel 7: [ OK ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_serial (83 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_parallel 7: [ OK ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_parallel (34 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_serial 4: [ OK ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_parallel (72 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_serial 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel0_error (390 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel1_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partsuncompressed (483 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partscompressed 11: [ OK ] search_ibf.cache_thresholds (324 ms) 11: [----------] 1 test from search_ibf (324 ms total) 11: 11: [----------] 48 tests from search_ibf_suite/search_ibf 11: [ RUN ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_0_error 8: [ OK ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_0_error (168 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_1_error 4: [ OK ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_serial (61 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_parallel 7: [ OK ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_serial (86 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_parallel 4: [ OK ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_parallel (67 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_serial 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_serial1_error (322 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel0_error 11: [ OK ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_0_error (96 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_1_error 11: [ OK ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_1_error (54 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_0_error 4: [ OK ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_serial (78 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_parallel 8: [ OK ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_1_error (183 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_0_error 7: [ OK ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_parallel (207 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_serial 4: [ OK ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_parallel (99 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_serial 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_0_error (87 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial0_error (476 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial1_error 4: [ OK ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_serial (56 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_parallel 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel0_error (270 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel1_error (396 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial0_error 11: [ OK ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_0_error (254 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_1_error 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_1_error (133 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_0_error 7: [ OK ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_serial (197 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_parallel 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_0_error (78 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_1_error 4: [ OK ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_parallel (187 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_serial 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel1_error (164 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial0_error 7: [ OK ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_parallel (89 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_serial 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partscompressed (552 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partsuncompressed 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_1_error (132 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_0_error 7: [ OK ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_serial (131 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/1_bins_19_window_parallel 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial0_error (163 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial1_error 11: [ OK ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_1_error (310 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/64_bins_19_window_0_error 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/1_bins_19_window_parallel (53 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/1_bins_19_window_serial 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial1_error (460 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial0_error (380 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial1_error 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/1_bins_19_window_serial (41 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/1_bins_23_window_parallel 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_0_error (127 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_1_error 4: [ OK ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_serial (275 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_parallel 11: [ OK ] search_ibf_suite/search_ibf.with_error/64_bins_19_window_0_error (87 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/64_bins_19_window_1_error 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/1_bins_23_window_parallel (63 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/1_bins_23_window_serial 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_1_error (65 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_0_error 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/1_bins_23_window_serial (74 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/64_bins_19_window_parallel 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial1_error (213 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel0_error 4: [ OK ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_parallel (138 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_serial 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_0_error (103 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_1_error 11: [ OK ] search_ibf_suite/search_ibf.with_error/64_bins_19_window_1_error (143 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partsuncompressed (463 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partscompressed 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_1_error (97 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_0_error 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/64_bins_19_window_parallel (145 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/64_bins_19_window_serial 4: [ OK ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_serial (189 ms) 4: [----------] 24 tests from build_hibf_suite/build_hibf (2639 ms total) 4: 4: [----------] Global test environment tear-down 4: [==========] 25 tests from 2 test suites ran. (2837 ms total) 4: [ PASSED ] 25 tests. 4/12 Test #4: test/cli/build/cli_build_hibf_test ................... Passed 2.86 sec test 12 Start 12: test/cli/upgrade/cli_upgrade_test 12: Test command: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/upgrade/cli_upgrade_test 12: Working Directory: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu/test/cli/upgrade 12: Test timeout computed to be: 10000000 12: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 12: [==========] Running 3 tests from 1 test suite. 12: [----------] Global test environment set-up. 12: [----------] 3 tests from upgrade 12: [ RUN ] upgrade.ibf 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/64_bins_19_window_serial (102 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/64_bins_23_window_parallel 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_0_error (122 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_1_error 11: [ OK ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_0_error (209 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel0_error (404 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial1_error (412 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel0_error 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_1_error (64 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/128_bins_23_window_0_error 12: [ OK ] upgrade.ibf (86 ms) 12: [ RUN ] upgrade.compressed_ibf 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/64_bins_23_window_parallel (111 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/64_bins_23_window_serial 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_23_window_0_error (61 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/128_bins_23_window_1_error 12: [ OK ] upgrade.compressed_ibf (70 ms) 12: [ RUN ] upgrade.partitioned_ibf 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel0_error (393 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel1_error 11: [ OK ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_1_error (178 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_0_error 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/64_bins_23_window_serial (87 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/128_bins_19_window_parallel 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_23_window_1_error (77 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/1_bins_19_window_0_error 11: [ OK ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_0_error (54 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel1_error (250 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial0_error 8: [ OK ] search_hibf_suite/search_hibf.no_hits/1_bins_19_window_0_error (63 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/1_bins_19_window_1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel0_error (306 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel1_error 8: [ OK ] search_hibf_suite/search_hibf.no_hits/1_bins_19_window_1_error (60 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/1_bins_23_window_0_error 11: [ OK ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_1_error (107 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_0_error 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/128_bins_19_window_parallel (168 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/128_bins_19_window_serial 12: [ OK ] upgrade.partitioned_ibf (313 ms) 12: [----------] 3 tests from upgrade (470 ms total) 12: 12: [----------] Global test environment tear-down 12: [==========] 3 tests from 1 test suite ran. (470 ms total) 12: [ PASSED ] 3 tests. 5/12 Test #12: test/cli/upgrade/cli_upgrade_test .................... Passed 0.49 sec 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel1_error (351 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial0_error 11: [ OK ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_0_error (214 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_1_error 8: [ OK ] search_hibf_suite/search_hibf.no_hits/1_bins_23_window_0_error (237 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/1_bins_23_window_1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial0_error (321 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel1_error (272 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial0_error 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/128_bins_19_window_serial (254 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/128_bins_23_window_parallel 11: [ OK ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_1_error (168 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/1_bins_19_window_0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partscompressed (880 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partsuncompressed 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/128_bins_23_window_parallel (135 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/128_bins_23_window_serial 8: [ OK ] search_hibf_suite/search_hibf.no_hits/1_bins_23_window_1_error (230 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/64_bins_19_window_0_error 11: [ OK ] search_ibf_suite/search_ibf.socks/1_bins_19_window_0_error (98 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/1_bins_19_window_1_error 11: ./test/cli/search/cli_search_ibf_test.cpp:40: Skipped 11: SOCKS only supports (k,k)-minimizers 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/1_bins_19_window_1_error (0 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/1_bins_23_window_0_error 11: ./test/cli/search/cli_search_ibf_test.cpp:40: Skipped 11: SOCKS only supports (k,k)-minimizers 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/1_bins_23_window_0_error (0 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/1_bins_23_window_1_error 11: ./test/cli/search/cli_search_ibf_test.cpp:40: Skipped 11: SOCKS only supports (k,k)-minimizers 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/1_bins_23_window_1_error (0 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/64_bins_19_window_0_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial0_error (330 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial0_error (286 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial1_error 11: [ OK ] search_ibf_suite/search_ibf.socks/64_bins_19_window_0_error (57 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/64_bins_19_window_1_error 11: ./test/cli/search/cli_search_ibf_test.cpp:40: Skipped 11: SOCKS only supports (k,k)-minimizers 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/64_bins_19_window_1_error (0 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/64_bins_23_window_0_error 11: ./test/cli/search/cli_search_ibf_test.cpp:40: Skipped 11: SOCKS only supports (k,k)-minimizers 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/64_bins_23_window_0_error (0 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/64_bins_23_window_1_error 11: ./test/cli/search/cli_search_ibf_test.cpp:40: Skipped 11: SOCKS only supports (k,k)-minimizers 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/64_bins_23_window_1_error (0 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/128_bins_19_window_0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial1_error (323 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel0_error 8: [ OK ] search_hibf_suite/search_hibf.no_hits/64_bins_19_window_0_error (116 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/64_bins_19_window_1_error 11: [ OK ] search_ibf_suite/search_ibf.socks/128_bins_19_window_0_error (26 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/128_bins_19_window_1_error 11: ./test/cli/search/cli_search_ibf_test.cpp:40: Skipped 11: SOCKS only supports (k,k)-minimizers 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/128_bins_19_window_1_error (0 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/128_bins_23_window_0_error 11: ./test/cli/search/cli_search_ibf_test.cpp:40: Skipped 11: SOCKS only supports (k,k)-minimizers 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/128_bins_23_window_0_error (0 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/128_bins_23_window_1_error 11: ./test/cli/search/cli_search_ibf_test.cpp:40: Skipped 11: SOCKS only supports (k,k)-minimizers 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/128_bins_23_window_1_error (0 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_0_error 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/128_bins_23_window_serial (169 ms) 7: [----------] 36 tests from build_ibf_suite/build_ibf (3760 ms total) 7: 7: [----------] Global test environment tear-down 7: [==========] 36 tests from 1 test suite ran. (3760 ms total) 7: [ PASSED ] 36 tests. 6/12 Test #7: test/cli/build/cli_build_ibf_test .................... Passed 3.77 sec 8: [ OK ] search_hibf_suite/search_hibf.no_hits/64_bins_19_window_1_error (65 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_0_error 11: [ OK ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_0_error (95 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial1_error (167 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_parallel0_error 11: [ OK ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_1_error (78 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_0_error 11: [ OK ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_0_error (47 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_1_error 11: [ OK ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_1_error (42 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_0_error 8: [ OK ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_0_error (207 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_1_error 11: [ OK ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_0_error (38 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_1_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial1_error (390 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel0_error 11: [ OK ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_1_error (66 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel0_error (405 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel1_error 8: [ OK ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_1_error (178 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/128_bins_19_window_0_error 11: [ OK ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_0_error (85 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_parallel0_error (351 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_parallel1_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel0_error (212 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel1_error 11: [ OK ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_1_error (91 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/128_bins_19_window_0_error 8: [ OK ] search_hibf_suite/search_hibf.no_hits/128_bins_19_window_0_error (107 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/128_bins_19_window_1_error 11: [ OK ] search_ibf_suite/search_ibf.threshold/128_bins_19_window_0_error (89 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/128_bins_19_window_1_error 8: [ OK ] search_hibf_suite/search_hibf.no_hits/128_bins_19_window_1_error (141 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/128_bins_23_window_0_error 11: [ OK ] search_ibf_suite/search_ibf.threshold/128_bins_19_window_1_error (72 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partsuncompressed (900 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partscompressed 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel1_error (209 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel1_error (358 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_serial0_error 11: [ OK ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_0_error (88 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_parallel1_error (315 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial0_error 11: [ OK ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_1_error (111 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_0_error 8: [ OK ] search_hibf_suite/search_hibf.no_hits/128_bins_23_window_0_error (233 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/128_bins_23_window_1_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial0_error (260 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial1_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_0_error (89 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_1_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_1_error (95 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_serial0_error (361 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_serial1_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partscompressed (408 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partsuncompressed 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial0_error (382 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial1_error 8: [ OK ] search_hibf_suite/search_hibf.no_hits/128_bins_23_window_1_error (267 ms) 8: [----------] 36 tests from search_hibf_suite/search_hibf (4840 ms total) 8: 8: [----------] Global test environment tear-down 8: [==========] 37 tests from 2 test suites ran. (4942 ms total) 8: [ PASSED ] 37 tests. 7/12 Test #8: test/cli/search/cli_search_hibf_test ................. Passed 4.96 sec 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial1_error (258 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel0_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_0_error (266 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_serial1_error (266 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_parallel0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial1_error (265 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partsuncompressed (386 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partscompressed 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel0_error (281 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel1_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_1_error (211 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_0_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_0_error (84 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel0_error (296 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_parallel0_error (380 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_parallel1_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_1_error (152 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_0_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel1_error (363 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial0_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_0_error (161 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel1_error (231 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partscompressed (471 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partsuncompressed 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_parallel1_error (350 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_serial0_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_1_error (218 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_0_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_0_error (53 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_1_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial0_error (353 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial1_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_1_error (64 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial0_error (331 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial1_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partsuncompressed (431 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partscompressed 11: [ OK ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_0_error (179 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_serial0_error (393 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_serial1_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial1_error (270 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_19_window_parallel0_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_1_error (123 ms) 11: [----------] 48 tests from search_ibf_suite/search_ibf (4678 ms total) 11: 11: [----------] Global test environment tear-down 11: [==========] 49 tests from 2 test suites ran. (5003 ms total) 11: [ PASSED ] 40 tests. 11: [ SKIPPED ] 9 tests, listed below: 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/1_bins_19_window_1_error 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/1_bins_23_window_0_error 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/1_bins_23_window_1_error 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/64_bins_19_window_1_error 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/64_bins_23_window_0_error 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/64_bins_23_window_1_error 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/128_bins_19_window_1_error 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/128_bins_23_window_0_error 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/128_bins_23_window_1_error 8/12 Test #11: test/cli/search/cli_search_ibf_test .................. Passed 5.06 sec 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_19_window_parallel0_error (128 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_19_window_parallel1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_19_window_parallel1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_19_window_serial0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial1_error (363 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel0_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_19_window_serial0_error (67 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_19_window_serial1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_19_window_serial1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_parallel0_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_parallel0_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_parallel1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_parallel1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_serial0_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_serial0_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_serial1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_serial1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_19_window_parallel0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_serial1_error (328 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_parallel0_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_19_window_parallel0_error (146 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_19_window_parallel1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_19_window_parallel1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_19_window_serial0_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_19_window_serial0_error (107 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_19_window_serial1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_19_window_serial1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_parallel0_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_parallel0_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_parallel1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_parallel1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_serial0_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_serial0_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_serial1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_serial1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_19_window_parallel0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel0_error (303 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel1_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_19_window_parallel0_error (88 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_19_window_parallel1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_19_window_parallel1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_19_window_serial0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partscompressed (650 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partsuncompressed 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_19_window_serial0_error (175 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_19_window_serial1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_19_window_serial1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_parallel0_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_parallel0_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_parallel1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_parallel1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_serial0_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_serial0_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_serial1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_serial1_error (0 ms) 5: [----------] 48 tests from build_ibf_compressed_suite/build_ibf_compressed (7008 ms total) 5: 5: [----------] Global test environment tear-down 5: [==========] 49 tests from 2 test suites ran. (7008 ms total) 5: [ PASSED ] 31 tests. 5: [ SKIPPED ] 18 tests, listed below: 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_19_window_parallel1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_19_window_serial1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_parallel0_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_parallel1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_serial0_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_serial1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_19_window_parallel1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_19_window_serial1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_parallel0_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_parallel1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_serial0_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_serial1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_19_window_parallel1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_19_window_serial1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_parallel0_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_parallel1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_serial0_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_serial1_error 9/12 Test #5: test/cli/build/cli_build_ibf_compressed_test ......... Passed 7.02 sec 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel1_error (275 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_parallel0_error (435 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_parallel1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial0_error (265 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_parallel1_error (347 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_serial0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partsuncompressed (547 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partscompressed 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial1_error (299 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel0_error (107 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel1_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partscompressed (314 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partsuncompressed 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_serial0_error (355 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_serial1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel1_error (91 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial0_error (120 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_serial1_error (273 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_parallel0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partsuncompressed (313 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partscompressed 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial1_error (122 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_parallel0_error (154 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_parallel1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel0_error (177 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_parallel1_error (109 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_serial0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partscompressed (343 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partsuncompressed 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_serial0_error (94 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_serial1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel1_error (247 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_serial1_error (97 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_parallel0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial0_error (252 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial1_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partsuncompressed (352 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partscompressed 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_parallel0_error (242 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_parallel1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial1_error (194 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_parallel1_error (208 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_serial0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel0_error (151 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_serial0_error (187 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_serial1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel1_error (162 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partscompressed (600 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partsuncompressed 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_serial1_error (204 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_parallel0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial0_error (216 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_parallel0_error (120 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_parallel1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_parallel1_error (157 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_serial0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial1_error (191 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partsuncompressed (474 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partscompressed 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_serial0_error (205 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_serial1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_serial1_error (171 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_parallel0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel0_error (443 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel1_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partscompressed (279 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partsuncompressed 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_parallel0_error (284 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_parallel1_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partsuncompressed (321 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partscompressed 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_parallel1_error (205 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_serial0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel1_error (516 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_serial0_error (230 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_serial1_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partscompressed (341 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partsuncompressed 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_serial1_error (201 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_parallel0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partsuncompressed (360 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partscompressed 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_parallel0_error (201 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_parallel1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial0_error (571 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_parallel1_error (251 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_serial0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_serial0_error (274 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_serial1_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partscompressed (554 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partsuncompressed 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial1_error (569 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_serial1_error (356 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_parallel0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel0_error (334 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel1_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partsuncompressed (500 ms) 6: [----------] 24 tests from build_ibf_partitioned_suite/build_ibf_partitioned (11450 ms total) 6: 6: [----------] Global test environment tear-down 6: [==========] 25 tests from 2 test suites ran. (12139 ms total) 6: [ PASSED ] 25 tests. 10/12 Test #6: test/cli/build/cli_build_ibf_partitioned_test ........ Passed 12.15 sec 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_parallel0_error (263 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_parallel1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel1_error (313 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_parallel1_error (334 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_serial0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial0_error (307 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_serial0_error (294 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_serial1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial1_error (254 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_serial1_error (295 ms) 9: [----------] 48 tests from search_hibf_preprocessing_suite/search_hibf_preprocessing (13117 ms total) 9: 9: [----------] Global test environment tear-down 9: [==========] 48 tests from 1 test suite ran. (13117 ms total) 9: [ PASSED ] 48 tests. 11/12 Test #9: test/cli/search/cli_search_hibf_preprocessing_test ... Passed 13.15 sec 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel0_error (444 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel1_error (355 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial0_error (344 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial1_error (372 ms) 10: [----------] 48 tests from search_ibf_preprocessing_suite/search_ibf_preprocessing (13987 ms total) 10: 10: [----------] Global test environment tear-down 10: [==========] 49 tests from 2 test suites ran. (14252 ms total) 10: [ PASSED ] 49 tests. 12/12 Test #10: test/cli/search/cli_search_ibf_preprocessing_test .... Passed 14.27 sec 100% tests passed, 0 tests failed out of 12 Total Test time (real) = 708.05 sec make[1]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-aarch64-linux-gnu && make -j8 install DESTDIR=/build/seqan-raptor-2.0.0.0.git.fecfbca\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/seqan-raptor-2.0.0.0.git.fecfbca+ds -B/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/debian/tmp/usr/bin/raptor -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/debian/tmp/usr/bin/chopper make[1]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-aarch64-linux-gnu' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'seqan-raptor' in '../seqan-raptor_2.0.0.0.git.fecfbca+ds-3_arm64.deb'. dpkg-deb: building package 'seqan-raptor-doc' in '../seqan-raptor-doc_2.0.0.0.git.fecfbca+ds-3_all.deb'. dpkg-deb: building package 'seqan-raptor-dbgsym' in '../seqan-raptor-dbgsym_2.0.0.0.git.fecfbca+ds-3_arm64.deb'. dpkg-genbuildinfo --build=binary -O../seqan-raptor_2.0.0.0.git.fecfbca+ds-3_arm64.buildinfo dpkg-genchanges --build=binary -O../seqan-raptor_2.0.0.0.git.fecfbca+ds-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/30827 and its subdirectories I: Current time: Fri May 24 10:26:18 -12 2024 I: pbuilder-time-stamp: 1716589578