I: pbuilder: network access will be disabled during build
I: Current time: Sat May 11 07:43:36 -12 2024
I: pbuilder-time-stamp: 1715456616
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [tm-align_20190822+dfsg-2.dsc]
I: copying [./tm-align_20190822+dfsg.orig.tar.xz]
I: copying [./tm-align_20190822+dfsg-2.debian.tar.xz]
I: Extracting source
gpgv: Signature made Mon Dec 23 19:16:06 2019 -12
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./tm-align_20190822+dfsg-2.dsc: no acceptable signature found
dpkg-source: info: extracting tm-align in tm-align-20190822+dfsg
dpkg-source: info: unpacking tm-align_20190822+dfsg.orig.tar.xz
dpkg-source: info: unpacking tm-align_20190822+dfsg-2.debian.tar.xz
I: using fakeroot in build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/530/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='arm64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8'
DISTRIBUTION='bookworm'
HOME='/var/lib/jenkins'
HOST_ARCH='arm64'
IFS='
'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='530'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.9sMzwYGO/pbuilderrc_BdGh --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.9sMzwYGO/b1 --logfile b1/build.log tm-align_20190822+dfsg-2.dsc'
SUDO_GID='117'
SUDO_UID='110'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
USERNAME='root'
_='/usr/bin/systemd-run'
http_proxy='http://192.168.101.16:3128'
I: uname -a
Linux codethink13-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 May 10 04:48 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/530/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 12), gfortran
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19616 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on gfortran; however:
Package gfortran is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran{a} gfortran-12{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libgfortran-12-dev{a} libgfortran5{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget
0 packages upgraded, 34 newly installed, 0 to remove and 0 not upgraded.
Need to get 27.7 MB of archives. After unpacking 110 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 2 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB]
Get: 3 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB]
Get: 4 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB]
Get: 5 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB]
Get: 6 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB]
Get: 7 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB]
Get: 8 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB]
Get: 9 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB]
Get: 10 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB]
Get: 11 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB]
Get: 12 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB]
Get: 13 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get: 15 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB]
Get: 16 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 17 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB]
Get: 18 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 19 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 20 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B]
Get: 21 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 22 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 23 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB]
Get: 24 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB]
Get: 25 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB]
Get: 26 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.1+b3 [619 kB]
Get: 27 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB]
Get: 28 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 29 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 30 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB]
Get: 31 http://deb.debian.org/debian bookworm/main arm64 libgfortran5 arm64 12.2.0-14 [340 kB]
Get: 32 http://deb.debian.org/debian bookworm/main arm64 libgfortran-12-dev arm64 12.2.0-14 [396 kB]
Get: 33 http://deb.debian.org/debian bookworm/main arm64 gfortran-12 arm64 12.2.0-14 [8646 kB]
Get: 34 http://deb.debian.org/debian bookworm/main arm64 gfortran arm64 4:12.2.0-3 [1420 B]
Fetched 27.7 MB in 1s (44.0 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sensible-utils.
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(Reading database ... 19616 files and directories currently installed.)
Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ...
Unpacking sensible-utils (0.0.17+nmu1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_arm64.deb ...
Unpacking libmagic-mgc (1:5.44-3) ...
Selecting previously unselected package libmagic1:arm64.
Preparing to unpack .../02-libmagic1_1%3a5.44-3_arm64.deb ...
Unpacking libmagic1:arm64 (1:5.44-3) ...
Selecting previously unselected package file.
Preparing to unpack .../03-file_1%3a5.44-3_arm64.deb ...
Unpacking file (1:5.44-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../04-gettext-base_0.21-12_arm64.deb ...
Unpacking gettext-base (0.21-12) ...
Selecting previously unselected package libuchardet0:arm64.
Preparing to unpack .../05-libuchardet0_0.0.7-1_arm64.deb ...
Unpacking libuchardet0:arm64 (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../06-groff-base_1.22.4-10_arm64.deb ...
Unpacking groff-base (1.22.4-10) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_arm64.deb ...
Unpacking bsdextrautils (2.38.1-5+b1) ...
Selecting previously unselected package libpipeline1:arm64.
Preparing to unpack .../08-libpipeline1_1.5.7-1_arm64.deb ...
Unpacking libpipeline1:arm64 (1.5.7-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../09-man-db_2.11.2-2_arm64.deb ...
Unpacking man-db (2.11.2-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../10-m4_1.4.19-3_arm64.deb ...
Unpacking m4 (1.4.19-3) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../11-autoconf_2.71-3_all.deb ...
Unpacking autoconf (2.71-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
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Preparing to unpack .../14-autopoint_0.21-12_all.deb ...
Unpacking autopoint (0.21-12) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ...
Unpacking libdebhelper-perl (13.11.4) ...
Selecting previously unselected package libtool.
Preparing to unpack .../16-libtool_2.4.7-5_all.deb ...
Unpacking libtool (2.4.7-5) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../17-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ...
Unpacking libsub-override-perl (0.09-4) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.13.1-1) ...
Selecting previously unselected package libelf1:arm64.
Preparing to unpack .../22-libelf1_0.188-2.1_arm64.deb ...
Unpacking libelf1:arm64 (0.188-2.1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../23-dwz_0.15-1_arm64.deb ...
Unpacking dwz (0.15-1) ...
Selecting previously unselected package libicu72:arm64.
Preparing to unpack .../24-libicu72_72.1-3_arm64.deb ...
Unpacking libicu72:arm64 (72.1-3) ...
Selecting previously unselected package libxml2:arm64.
Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.1+b3_arm64.deb ...
Unpacking libxml2:arm64 (2.9.14+dfsg-1.1+b3) ...
Selecting previously unselected package gettext.
Preparing to unpack .../26-gettext_0.21-12_arm64.deb ...
Unpacking gettext (0.21-12) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../29-debhelper_13.11.4_all.deb ...
Unpacking debhelper (13.11.4) ...
Selecting previously unselected package libgfortran5:arm64.
Preparing to unpack .../30-libgfortran5_12.2.0-14_arm64.deb ...
Unpacking libgfortran5:arm64 (12.2.0-14) ...
Selecting previously unselected package libgfortran-12-dev:arm64.
Preparing to unpack .../31-libgfortran-12-dev_12.2.0-14_arm64.deb ...
Unpacking libgfortran-12-dev:arm64 (12.2.0-14) ...
Selecting previously unselected package gfortran-12.
Preparing to unpack .../32-gfortran-12_12.2.0-14_arm64.deb ...
Unpacking gfortran-12 (12.2.0-14) ...
Selecting previously unselected package gfortran.
Preparing to unpack .../33-gfortran_4%3a12.2.0-3_arm64.deb ...
Unpacking gfortran (4:12.2.0-3) ...
Setting up libpipeline1:arm64 (1.5.7-1) ...
Setting up libicu72:arm64 (72.1-3) ...
Setting up bsdextrautils (2.38.1-5+b1) ...
Setting up libmagic-mgc (1:5.44-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.11.4) ...
Setting up libmagic1:arm64 (1:5.44-3) ...
Setting up gettext-base (0.21-12) ...
Setting up m4 (1.4.19-3) ...
Setting up file (1:5.44-3) ...
Setting up autotools-dev (20220109.1) ...
Setting up autopoint (0.21-12) ...
Setting up libgfortran5:arm64 (12.2.0-14) ...
Setting up autoconf (2.71-3) ...
Setting up sensible-utils (0.0.17+nmu1) ...
Setting up libuchardet0:arm64 (0.0.7-1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libelf1:arm64 (0.188-2.1) ...
Setting up libxml2:arm64 (2.9.14+dfsg-1.1+b3) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up gettext (0.21-12) ...
Setting up libtool (2.4.7-5) ...
Setting up libgfortran-12-dev:arm64 (12.2.0-14) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up gfortran-12 (12.2.0-14) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.22.4-10) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.11.2-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:12.2.0-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up debhelper (13.11.4) ...
Processing triggers for libc-bin (2.36-8) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
fakeroot is already the newest version (1.31-1.2).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: Running cd /build/tm-align-20190822+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../tm-align_20190822+dfsg-2_source.changes
dpkg-buildpackage: info: source package tm-align
dpkg-buildpackage: info: source version 20190822+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
fakeroot debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/tm-align-20190822+dfsg'
for src in `ls *.f` ; do \
rm -f `basename ${src} .f` ; \
done
dh_clean
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/tm-align.substvars debian/files
rm -fr -- debian/tm-align/ debian/tmp/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
make[1]: Leaving directory '/build/tm-align-20190822+dfsg'
dh_clean
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/tm-align.substvars debian/files
rm -fr -- debian/tm-align/ debian/tmp/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
debian/rules build
dh build
dh_update_autotools_config
dh_autoreconf
debian/rules override_dh_auto_build
make[1]: Entering directory '/build/tm-align-20190822+dfsg'
for src in `ls *.f` ; do \
gfortran -ffast-math -g -O2 -ffile-prefix-map=/build/tm-align-20190822+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -o `basename ${src} .f` ${src} ; \
done
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
make[1]: Leaving directory '/build/tm-align-20190822+dfsg'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary
dh binary
dh_testroot
dh_prep
rm -f -- debian/tm-align.substvars
rm -fr -- debian/.debhelper/generated/tm-align/ debian/tm-align/ debian/tmp/
dh_auto_install --destdir=debian/tm-align/
install -m0755 -d /build/tm-align-20190822\+dfsg/debian/tm-align
dh_install
install -m0755 -d debian/tm-align/usr/bin
cp --reflink=auto -a ./TMalign ./TMscore debian/tm-align/usr/bin/
dh_installdocs
install -m0755 -d debian/tm-align/usr/share/doc/tm-align
install -m0755 -d debian/tm-align/usr/share/doc/tm-align
cp --reflink=auto -a ./debian/tests/run-unit-test debian/tm-align/usr/share/doc/tm-align
cp --reflink=auto -a ./debian/README.test debian/tm-align/usr/share/doc/tm-align
chown -R 0:0 debian/tm-align/usr/share/doc
chmod -R u\+rw,go=rX debian/tm-align/usr/share/doc
install -p -m0644 debian/README.Debian debian/tm-align/usr/share/doc/tm-align/README.Debian
install -p -m0644 debian/copyright debian/tm-align/usr/share/doc/tm-align/copyright
dh_installchangelogs
install -m0755 -d debian/tm-align/usr/share/doc/tm-align
install -p -m0644 debian/.debhelper/generated/tm-align/dh_installchangelogs.dch.trimmed debian/tm-align/usr/share/doc/tm-align/changelog.Debian
dh_installexamples
install -m0755 -d debian/tm-align/usr/share/doc/tm-align/examples
cp --reflink=auto -a ./debian/examples/1ni7.pdb.gz debian/tm-align/usr/share/doc/tm-align/examples
cp --reflink=auto -a ./debian/examples/5eep.pdb.gz debian/tm-align/usr/share/doc/tm-align/examples
dh_installman
install -m0755 -d debian/tm-align/usr/share/man/man1/
install -p -m0644 ./debian/TMalign.1 debian/tm-align/usr/share/man/man1/TMalign.1
install -m0755 -d debian/tm-align/usr/share/man/man1/
install -p -m0644 ./debian/TMscore.1 debian/tm-align/usr/share/man/man1/TMscore.1
man-recode --to-code UTF-8 --suffix .dh-new debian/tm-align/usr/share/man/man1/TMalign.1
man-recode --to-code UTF-8 --suffix .dh-new debian/tm-align/usr/share/man/man1/TMscore.1
mv debian/tm-align/usr/share/man/man1/TMscore.1.dh-new debian/tm-align/usr/share/man/man1/TMscore.1
chmod 0644 -- debian/tm-align/usr/share/man/man1/TMscore.1
mv debian/tm-align/usr/share/man/man1/TMalign.1.dh-new debian/tm-align/usr/share/man/man1/TMalign.1
chmod 0644 -- debian/tm-align/usr/share/man/man1/TMalign.1
dh_perl
dh_link
dh_strip_nondeterminism
Using 1577171270 as canonical time
Normalizing debian/tm-align/usr/share/doc/tm-align/examples/5eep.pdb.gz using File::StripNondeterminism::handlers::gzip
Normalizing debian/tm-align/usr/share/doc/tm-align/examples/1ni7.pdb.gz using File::StripNondeterminism::handlers::gzip
dh_compress
cd debian/tm-align
chmod a-x usr/share/doc/tm-align/changelog.Debian usr/share/man/man1/TMalign.1 usr/share/man/man1/TMscore.1
gzip -9nf usr/share/doc/tm-align/changelog.Debian usr/share/man/man1/TMalign.1 usr/share/man/man1/TMscore.1
cd '/build/tm-align-20190822+dfsg'
dh_fixperms
find debian/tm-align -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/tm-align ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/tm-align/usr/share/doc -type f -a -true -a ! -regex 'debian/tm-align/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/tm-align/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/tm-align/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/tm-align -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/tm-align/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
dh_missing
dh_dwz
install -m0755 -d debian/tm-align/usr/lib/debug/.dwz/aarch64-linux-gnu
dwz -mdebian/tm-align/usr/lib/debug/.dwz/aarch64-linux-gnu/tm-align.debug -M/usr/lib/debug/.dwz/aarch64-linux-gnu/tm-align.debug -- debian/tm-align/usr/bin/TMalign debian/tm-align/usr/bin/TMscore
objcopy --compress-debug-sections debian/tm-align/usr/lib/debug/.dwz/aarch64-linux-gnu/tm-align.debug
chmod 0644 -- debian/tm-align/usr/lib/debug/.dwz/aarch64-linux-gnu/tm-align.debug
chown 0:0 -- debian/tm-align/usr/lib/debug/.dwz/aarch64-linux-gnu/tm-align.debug
dh_strip
install -m0755 -d debian/.debhelper/tm-align/dbgsym-root/usr/lib/debug/.build-id/73
objcopy --only-keep-debug --compress-debug-sections debian/tm-align/usr/bin/TMalign debian/.debhelper/tm-align/dbgsym-root/usr/lib/debug/.build-id/73/62c20fef46076f2a2ba3cc2dee08728f747f53.debug
chmod 0644 -- debian/.debhelper/tm-align/dbgsym-root/usr/lib/debug/.build-id/73/62c20fef46076f2a2ba3cc2dee08728f747f53.debug
chown 0:0 -- debian/.debhelper/tm-align/dbgsym-root/usr/lib/debug/.build-id/73/62c20fef46076f2a2ba3cc2dee08728f747f53.debug
strip --remove-section=.comment --remove-section=.note debian/tm-align/usr/bin/TMalign
objcopy --add-gnu-debuglink debian/.debhelper/tm-align/dbgsym-root/usr/lib/debug/.build-id/73/62c20fef46076f2a2ba3cc2dee08728f747f53.debug debian/tm-align/usr/bin/TMalign
install -m0755 -d debian/.debhelper/tm-align/dbgsym-root/usr/lib/debug/.build-id/3f
objcopy --only-keep-debug --compress-debug-sections debian/tm-align/usr/bin/TMscore debian/.debhelper/tm-align/dbgsym-root/usr/lib/debug/.build-id/3f/de1bc95e0191585eba16683b41ac80ac2ce0fd.debug
chmod 0644 -- debian/.debhelper/tm-align/dbgsym-root/usr/lib/debug/.build-id/3f/de1bc95e0191585eba16683b41ac80ac2ce0fd.debug
chown 0:0 -- debian/.debhelper/tm-align/dbgsym-root/usr/lib/debug/.build-id/3f/de1bc95e0191585eba16683b41ac80ac2ce0fd.debug
strip --remove-section=.comment --remove-section=.note debian/tm-align/usr/bin/TMscore
objcopy --add-gnu-debuglink debian/.debhelper/tm-align/dbgsym-root/usr/lib/debug/.build-id/3f/de1bc95e0191585eba16683b41ac80ac2ce0fd.debug debian/tm-align/usr/bin/TMscore
install -m0755 -d debian/.debhelper/tm-align/dbgsym-root/usr/lib/debug/.dwz
cp --reflink=auto -a debian/tm-align/usr/lib/debug/.dwz/aarch64-linux-gnu debian/.debhelper/tm-align/dbgsym-root/usr/lib/debug/.dwz
rm -fr debian/tm-align/usr/lib/debug/.dwz
rmdir -p --ignore-fail-on-non-empty debian/tm-align/usr/lib/debug
install -m0755 -d debian/.debhelper/tm-align/dbgsym-root/usr/share/doc
ln -s tm-align debian/.debhelper/tm-align/dbgsym-root/usr/share/doc/tm-align-dbgsym
install -m0755 -d debian/.debhelper/tm-align
dh_makeshlibs
rm -f debian/tm-align/DEBIAN/shlibs
dh_shlibdeps
install -m0755 -d debian/tm-align/DEBIAN
dpkg-shlibdeps -Tdebian/tm-align.substvars debian/tm-align/usr/bin/TMalign debian/tm-align/usr/bin/TMscore
dh_installdeb
install -m0755 -d debian/tm-align/DEBIAN
dh_gencontrol
install -m0755 -d debian/tm-align/DEBIAN
echo misc:Depends= >> debian/tm-align.substvars
echo misc:Pre-Depends= >> debian/tm-align.substvars
install -m0755 -d debian/.debhelper/tm-align/dbgsym-root/DEBIAN
dpkg-gencontrol -ptm-align -ldebian/changelog -Tdebian/tm-align.substvars -Pdebian/.debhelper/tm-align/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=tm-align-dbgsym "-DDepends=tm-align (= \${binary:Version})" "-DDescription=debug symbols for tm-align" "-DBuild-Ids=3fde1bc95e0191585eba16683b41ac80ac2ce0fd 7362c20fef46076f2a2ba3cc2dee08728f747f53" -DSection=debug -UMulti-Arch -UReplaces -UBreaks
chmod 0644 -- debian/.debhelper/tm-align/dbgsym-root/DEBIAN/control
chown 0:0 -- debian/.debhelper/tm-align/dbgsym-root/DEBIAN/control
dpkg-gencontrol -ptm-align -ldebian/changelog -Tdebian/tm-align.substvars -Pdebian/tm-align
chmod 0644 -- debian/tm-align/DEBIAN/control
chown 0:0 -- debian/tm-align/DEBIAN/control
dh_md5sums
install -m0755 -d debian/tm-align/DEBIAN
cd debian/tm-align >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/tm-align/DEBIAN/md5sums
chown 0:0 -- debian/tm-align/DEBIAN/md5sums
install -m0755 -d debian/.debhelper/tm-align/dbgsym-root/DEBIAN
cd debian/.debhelper/tm-align/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/tm-align/dbgsym-root/DEBIAN/md5sums
chown 0:0 -- debian/.debhelper/tm-align/dbgsym-root/DEBIAN/md5sums
dh_builddeb
dpkg-deb --build debian/tm-align ..
dpkg-deb --root-owner-group --build debian/.debhelper/tm-align/dbgsym-root ..
dpkg-deb: building package 'tm-align-dbgsym' in '../tm-align-dbgsym_20190822+dfsg-2_arm64.deb'.
dpkg-deb: building package 'tm-align' in '../tm-align_20190822+dfsg-2_arm64.deb'.
dpkg-genbuildinfo --build=binary -O../tm-align_20190822+dfsg-2_arm64.buildinfo
dpkg-genchanges --build=binary -O../tm-align_20190822+dfsg-2_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/530 and its subdirectories
I: Current time: Sat May 11 07:44:54 -12 2024
I: pbuilder-time-stamp: 1715456694