I: pbuilder: network access will be disabled during build I: Current time: Mon May 15 13:34:21 -12 2023 I: pbuilder-time-stamp: 1684200861 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fenicsx-performance-tests_0.5.0~git20220731.821823b-1.dsc] I: copying [./fenicsx-performance-tests_0.5.0~git20220731.821823b.orig.tar.gz] I: copying [./fenicsx-performance-tests_0.5.0~git20220731.821823b-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Sep 22 00:05:12 2022 -12 gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fenicsx-performance-tests_0.5.0~git20220731.821823b-1.dsc: no acceptable signature found dpkg-source: info: extracting fenicsx-performance-tests in fenicsx-performance-tests-0.5.0~git20220731.821823b dpkg-source: info: unpacking fenicsx-performance-tests_0.5.0~git20220731.821823b.orig.tar.gz dpkg-source: info: unpacking fenicsx-performance-tests_0.5.0~git20220731.821823b-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying enable_complex_build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1361/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='441a3a87a28b46ebb8ae815b7d5b4581' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1361' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.hm1oJCHB/pbuilderrc_v8cX --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.hm1oJCHB/b1 --logfile b1/build.log fenicsx-performance-tests_0.5.0~git20220731.821823b-1.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64c 5.10.0-23-arm64 #1 SMP Debian 5.10.179-1 (2023-05-12) aarch64 GNU/Linux I: ls -l /bin total 5072 -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash -rwxr-xr-x 1 root root 133220 Sep 20 2022 date -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd -rwxr-xr-x 1 root root 68104 Sep 20 2022 df -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 67548 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch -rwxr-xr-x 1 root root 67548 Sep 20 2022 true -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/1361/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake (>= 3.16~), libboost-dev (>= 1.70~), libdolfinx-dev (>= 0.5~), mpi-default-dev, python3-ffcx, xtensor-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19329 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake (>= 3.16~); however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev (>= 1.70~); however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfinx-dev (>= 0.5~); however: Package libdolfinx-dev is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-ffcx; however: Package python3-ffcx is not installed. pbuilder-satisfydepends-dummy depends on xtensor-dev; however: Package xtensor-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-12{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} libaec-dev{a} libaec0{a} libamd2{a} libarchive-zip-perl{a} libarchive13{a} libarpack2{a} libarpack2-dev{a} libbasix-dev{a} libbasix0.5{a} libblas-dev{a} libblas3{a} libboost-atomic1.74-dev{a} libboost-atomic1.74.0{a} libboost-chrono-dev{a} libboost-chrono1.74-dev{a} libboost-chrono1.74.0{a} libboost-date-time1.74-dev{a} libboost-date-time1.74.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.74-dev{a} libboost-filesystem1.74.0{a} libboost-iostreams-dev{a} libboost-iostreams1.74-dev{a} libboost-math-dev{a} libboost-math1.74-dev{a} libboost-math1.74.0{a} libboost-mpi-dev{a} libboost-mpi1.74-dev{a} libboost-mpi1.74.0{a} libboost-program-options-dev{a} libboost-program-options1.74-dev{a} libboost-program-options1.74.0{a} libboost-regex1.74-dev{a} libboost-regex1.74.0{a} libboost-serialization-dev{a} libboost-serialization1.74-dev{a} libboost-serialization1.74.0{a} libboost-system1.74-dev{a} libboost-system1.74.0{a} libboost-thread-dev{a} libboost-thread1.74-dev{a} libboost-thread1.74.0{a} libboost-timer-dev{a} libboost-timer1.74-dev{a} libboost-timer1.74.0{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libbtf1{a} libc6-dbg{a} libcamd2{a} libcbor0.8{a} libccolamd2{a} libcholmod3{a} libcolamd2{a} libcombblas1.16.0{a} libcurl4{a} libcurl4-openssl-dev{a} libcxsparse3{a} libdebhelper-perl{a} libdolfinx-dev{a} libdolfinx-real-dev{a} libdolfinx-real0.5{a} libedit2{a} libeigen3-dev{a} libelf1{a} libevent-2.1-7{a} libevent-core-2.1-7{a} libevent-dev{a} libevent-extra-2.1-7{a} libevent-openssl-2.1-7{a} libevent-pthreads-2.1-7{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-mpi-dev{a} libfftw3-mpi3{a} libfftw3-single3{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgfortran-12-dev{a} libgfortran5{a} libhdf5-mpi-dev{a} libhdf5-openmpi-103-1{a} libhdf5-openmpi-cpp-103-1{a} libhdf5-openmpi-dev{a} libhdf5-openmpi-fortran-102{a} libhdf5-openmpi-hl-100{a} libhdf5-openmpi-hl-cpp-100{a} libhdf5-openmpi-hl-fortran-100{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libhypre-2.26.0{a} libhypre-dev{a} libibverbs-dev{a} libibverbs1{a} libicu-dev{a} libicu72{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp25{a} libklu1{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} libldl2{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmetis5{a} libmongoose2{a} libmumps-5.5{a} libmumps-dev{a} libmumps-headers-dev{a} libmunge2{a} libnghttp2-14{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libparpack2{a} libparpack2-dev{a} libpciaccess0{a} libpetsc-real3.18{a} libpetsc-real3.18-dev{a} libpetsc3.18-dev-common{a} libpipeline1{a} libpkgconf3{a} libpmix-dev{a} libpmix2{a} libproc2-0{a} libpsl5{a} libpthread-stubs0-dev{a} libptscotch-7.0{a} libptscotch-dev{a} libpugixml-dev{a} libpugixml1v5{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} librbio2{a} librdmacm1{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libscalapack-mpi-dev{a} libscalapack-openmpi-dev{a} libscalapack-openmpi2.2{a} libscotch-7.0{a} libscotch-dev{a} libslepc-real3.18{a} libslepc-real3.18-dev{a} libsliplu1{a} libspqr2{a} libssh2-1{a} libssl-dev{a} libsub-override-perl{a} libsuitesparse-dev{a} libsuitesparseconfig5{a} libsuperlu-dev{a} libsuperlu-dist-dev{a} libsuperlu-dist8{a} libsuperlu5{a} libsz2{a} libtool{a} libuchardet0{a} libumfpack5{a} libuv1{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxml2{a} libxml2-dev{a} libxnvctrl0{a} libxtensor-dev{a} libyaml-0-2{a} libyaml-dev{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} mpi-default-dev{a} nlohmann-json3-dev{a} ocl-icd-libopencl1{a} ocl-icd-opencl-dev{a} opencl-c-headers{a} opencl-clhpp-headers{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-basix{a} python3-cffi{a} python3-cffi-backend{a} python3-dev{a} python3-distutils{a} python3-ffcx{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-pkg-resources{a} python3-ply{a} python3-pycparser{a} python3-ufl{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} valgrind{a} valgrind-mpi{a} x11proto-dev{a} xorg-sgml-doctools{a} xtensor-dev{a} xtl-dev{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl gdb gdb-minimal javascript-common ksh ksh93u+m libarchive-cpio-perl libcoarrays-openmpi-dev libgl-dev libgraphblas-dev libldap-common libmail-sendmail-perl libpetsc3.18-dev-examples libsasl2-modules lynx mksh psmisc publicsuffix python3-numba valgrind-dbg wget xauth zsh 0 packages upgraded, 271 newly installed, 0 to remove and 0 not upgraded. Need to get 163 MB of archives. After unpacking 745 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main armhf libpython3.11-minimal armhf 3.11.2-6 [798 kB] Get: 2 http://deb.debian.org/debian bookworm/main armhf libexpat1 armhf 2.5.0-1 [79.9 kB] Get: 3 http://deb.debian.org/debian bookworm/main armhf python3.11-minimal armhf 3.11.2-6 [1714 kB] Get: 4 http://deb.debian.org/debian bookworm/main armhf python3-minimal armhf 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main armhf media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main armhf readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main armhf libreadline8 armhf 8.2-1.3 [144 kB] Get: 8 http://deb.debian.org/debian bookworm/main armhf libpython3.11-stdlib armhf 3.11.2-6 [1678 kB] Get: 9 http://deb.debian.org/debian bookworm/main armhf python3.11 armhf 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main armhf libpython3-stdlib armhf 3.11.2-1+b1 [9296 B] Get: 11 http://deb.debian.org/debian bookworm/main armhf python3 armhf 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main armhf libproc2-0 armhf 2:4.0.2-3 [54.2 kB] Get: 13 http://deb.debian.org/debian bookworm/main armhf procps armhf 2:4.0.2-3 [695 kB] Get: 14 http://deb.debian.org/debian bookworm/main armhf sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 15 http://deb.debian.org/debian bookworm/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB] Get: 16 http://deb.debian.org/debian bookworm/main armhf libmagic1 armhf 1:5.44-3 [96.5 kB] Get: 17 http://deb.debian.org/debian bookworm/main armhf file armhf 1:5.44-3 [41.6 kB] Get: 18 http://deb.debian.org/debian bookworm/main armhf gettext-base armhf 0.21-12 [157 kB] Get: 19 http://deb.debian.org/debian bookworm/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 20 http://deb.debian.org/debian bookworm/main armhf groff-base armhf 1.22.4-10 [825 kB] Get: 21 http://deb.debian.org/debian bookworm/main armhf bsdextrautils armhf 2.38.1-5+b1 [78.6 kB] Get: 22 http://deb.debian.org/debian bookworm/main armhf libpipeline1 armhf 1.5.7-1 [33.6 kB] Get: 23 http://deb.debian.org/debian bookworm/main armhf man-db armhf 2.11.2-2 [1351 kB] Get: 24 http://deb.debian.org/debian bookworm/main armhf libbsd0 armhf 0.11.7-2 [113 kB] Get: 25 http://deb.debian.org/debian bookworm/main armhf libedit2 armhf 3.1-20221030-2 [77.0 kB] Get: 26 http://deb.debian.org/debian bookworm/main armhf libcbor0.8 armhf 0.8.0-2+b1 [23.1 kB] Get: 27 http://deb.debian.org/debian bookworm/main armhf libfido2-1 armhf 1.12.0-2+b1 [69.3 kB] Get: 28 http://deb.debian.org/debian bookworm/main armhf openssh-client armhf 1:9.2p1-2 [893 kB] Get: 29 http://deb.debian.org/debian bookworm/main armhf m4 armhf 1.4.19-3 [265 kB] Get: 30 http://deb.debian.org/debian bookworm/main armhf autoconf all 2.71-3 [332 kB] Get: 31 http://deb.debian.org/debian bookworm/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 32 http://deb.debian.org/debian bookworm/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 33 http://deb.debian.org/debian bookworm/main armhf autopoint all 0.21-12 [495 kB] Get: 34 http://deb.debian.org/debian bookworm/main armhf libicu72 armhf 72.1-3 [9048 kB] Get: 35 http://deb.debian.org/debian bookworm/main armhf libxml2 armhf 2.9.14+dfsg-1.2 [591 kB] Get: 36 http://deb.debian.org/debian bookworm/main armhf libarchive13 armhf 3.6.2-1 [299 kB] Get: 37 http://deb.debian.org/debian bookworm/main armhf libbrotli1 armhf 1.0.9-2+b6 [271 kB] Get: 38 http://deb.debian.org/debian bookworm/main armhf libsasl2-modules-db armhf 2.1.28+dfsg-10 [19.0 kB] Get: 39 http://deb.debian.org/debian bookworm/main armhf libsasl2-2 armhf 2.1.28+dfsg-10 [52.3 kB] Get: 40 http://deb.debian.org/debian bookworm/main armhf libldap-2.5-0 armhf 2.5.13+dfsg-5 [158 kB] Get: 41 http://deb.debian.org/debian bookworm/main armhf libnghttp2-14 armhf 1.52.0-1 [60.8 kB] Get: 42 http://deb.debian.org/debian bookworm/main armhf libpsl5 armhf 0.21.2-1 [57.5 kB] Get: 43 http://deb.debian.org/debian bookworm/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get: 44 http://deb.debian.org/debian bookworm/main armhf libssh2-1 armhf 1.10.0-3+b1 [163 kB] Get: 45 http://deb.debian.org/debian bookworm/main armhf libcurl4 armhf 7.88.1-9 [347 kB] Get: 46 http://deb.debian.org/debian bookworm/main armhf libjsoncpp25 armhf 1.9.5-4 [68.6 kB] Get: 47 http://deb.debian.org/debian bookworm/main armhf librhash0 armhf 1.4.3-3 [146 kB] Get: 48 http://deb.debian.org/debian bookworm/main armhf libuv1 armhf 1.44.2-1 [126 kB] Get: 49 http://deb.debian.org/debian bookworm/main armhf cmake-data all 3.25.1-1 [2026 kB] Get: 50 http://deb.debian.org/debian bookworm/main armhf cmake armhf 3.25.1-1 [4263 kB] Get: 51 http://deb.debian.org/debian bookworm/main armhf libdebhelper-perl all 13.11.4 [81.2 kB] Get: 52 http://deb.debian.org/debian bookworm/main armhf libtool all 2.4.7-5 [517 kB] Get: 53 http://deb.debian.org/debian bookworm/main armhf dh-autoreconf all 20 [17.1 kB] Get: 54 http://deb.debian.org/debian bookworm/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 55 http://deb.debian.org/debian bookworm/main armhf libsub-override-perl all 0.09-4 [9304 B] Get: 56 http://deb.debian.org/debian bookworm/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 57 http://deb.debian.org/debian bookworm/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 58 http://deb.debian.org/debian bookworm/main armhf libelf1 armhf 0.188-2.1 [170 kB] Get: 59 http://deb.debian.org/debian bookworm/main armhf dwz armhf 0.15-1 [101 kB] Get: 60 http://deb.debian.org/debian bookworm/main armhf gettext armhf 0.21-12 [1229 kB] Get: 61 http://deb.debian.org/debian bookworm/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 62 http://deb.debian.org/debian bookworm/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 63 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB] Get: 64 http://deb.debian.org/debian bookworm/main armhf fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 65 http://deb.debian.org/debian bookworm/main armhf libgfortran5 armhf 12.2.0-14 [246 kB] Get: 66 http://deb.debian.org/debian bookworm/main armhf libgfortran-12-dev armhf 12.2.0-14 [298 kB] Get: 67 http://deb.debian.org/debian bookworm/main armhf gfortran-12 armhf 12.2.0-14 [7633 kB] Get: 68 http://deb.debian.org/debian bookworm/main armhf gfortran armhf 4:12.2.0-3 [1424 B] Get: 69 http://deb.debian.org/debian bookworm/main armhf libnl-3-200 armhf 3.7.0-0.2+b1 [55.8 kB] Get: 70 http://deb.debian.org/debian bookworm/main armhf libnl-route-3-200 armhf 3.7.0-0.2+b1 [156 kB] Get: 71 http://deb.debian.org/debian bookworm/main armhf libibverbs1 armhf 44.0-2 [53.6 kB] Get: 72 http://deb.debian.org/debian bookworm/main armhf ibverbs-providers armhf 44.0-2 [28.4 kB] Get: 73 http://deb.debian.org/debian bookworm/main armhf icu-devtools armhf 72.1-3 [183 kB] Get: 74 http://deb.debian.org/debian bookworm/main armhf libaec0 armhf 1.0.6-1+b1 [19.8 kB] Get: 75 http://deb.debian.org/debian bookworm/main armhf libsz2 armhf 1.0.6-1+b1 [7864 B] Get: 76 http://deb.debian.org/debian bookworm/main armhf libaec-dev armhf 1.0.6-1+b1 [18.1 kB] Get: 77 http://deb.debian.org/debian bookworm/main armhf libsuitesparseconfig5 armhf 1:5.12.0+dfsg-2 [23.7 kB] Get: 78 http://deb.debian.org/debian bookworm/main armhf libamd2 armhf 1:5.12.0+dfsg-2 [30.1 kB] Get: 79 http://deb.debian.org/debian bookworm/main armhf libblas3 armhf 3.11.0-2 [105 kB] Get: 80 http://deb.debian.org/debian bookworm/main armhf liblapack3 armhf 3.11.0-2 [1724 kB] Get: 81 http://deb.debian.org/debian bookworm/main armhf libarpack2 armhf 3.8.0-3 [82.5 kB] Get: 82 http://deb.debian.org/debian bookworm/main armhf libblas-dev armhf 3.11.0-2 [115 kB] Get: 83 http://deb.debian.org/debian bookworm/main armhf liblapack-dev armhf 3.11.0-2 [1798 kB] Get: 84 http://deb.debian.org/debian bookworm/main armhf libarpack2-dev armhf 3.8.0-3 [99.7 kB] Get: 85 http://deb.debian.org/debian bookworm/main armhf libbasix0.5 armhf 0.5.1-1+b2 [231 kB] Get: 86 http://deb.debian.org/debian bookworm/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB] Get: 87 http://deb.debian.org/debian bookworm/main armhf pkgconf-bin armhf 1.8.1-1 [28.5 kB] Get: 88 http://deb.debian.org/debian bookworm/main armhf pkgconf armhf 1.8.1-1 [25.9 kB] Get: 89 http://deb.debian.org/debian bookworm/main armhf pkg-config armhf 1.8.1-1 [13.7 kB] Get: 90 http://deb.debian.org/debian bookworm/main armhf libeigen3-dev all 3.4.0-4 [1041 kB] Get: 91 http://deb.debian.org/debian bookworm/main armhf libbasix-dev armhf 0.5.1-1+b2 [56.9 kB] Get: 92 http://deb.debian.org/debian bookworm/main armhf libboost1.74-dev armhf 1.74.0+ds1-20 [9510 kB] Get: 93 http://deb.debian.org/debian bookworm/main armhf libboost-atomic1.74.0 armhf 1.74.0+ds1-20 [220 kB] Get: 94 http://deb.debian.org/debian bookworm/main armhf libboost-atomic1.74-dev armhf 1.74.0+ds1-20 [221 kB] Get: 95 http://deb.debian.org/debian bookworm/main armhf libboost-chrono1.74.0 armhf 1.74.0+ds1-20 [224 kB] Get: 96 http://deb.debian.org/debian bookworm/main armhf libboost-chrono1.74-dev armhf 1.74.0+ds1-20 [231 kB] Get: 97 http://deb.debian.org/debian bookworm/main armhf libboost-chrono-dev armhf 1.74.0.3 [4960 B] Get: 98 http://deb.debian.org/debian bookworm/main armhf libboost-date-time1.74.0 armhf 1.74.0+ds1-20 [217 kB] Get: 99 http://deb.debian.org/debian bookworm/main armhf libboost-serialization1.74.0 armhf 1.74.0+ds1-20 [298 kB] Get: 100 http://deb.debian.org/debian bookworm/main armhf libboost-serialization1.74-dev armhf 1.74.0+ds1-20 [368 kB] Get: 101 http://deb.debian.org/debian bookworm/main armhf libboost-date-time1.74-dev armhf 1.74.0+ds1-20 [226 kB] Get: 102 http://deb.debian.org/debian bookworm/main armhf libboost-dev armhf 1.74.0.3 [4548 B] Get: 103 http://deb.debian.org/debian bookworm/main armhf libboost-filesystem1.74.0 armhf 1.74.0+ds1-20 [250 kB] Get: 104 http://deb.debian.org/debian bookworm/main armhf libboost-system1.74.0 armhf 1.74.0+ds1-20 [218 kB] Get: 105 http://deb.debian.org/debian bookworm/main armhf libboost-system1.74-dev armhf 1.74.0+ds1-20 [219 kB] Get: 106 http://deb.debian.org/debian bookworm/main armhf libboost-filesystem1.74-dev armhf 1.74.0+ds1-20 [264 kB] Get: 107 http://deb.debian.org/debian bookworm/main armhf libboost-filesystem-dev armhf 1.74.0.3 [4368 B] Get: 108 http://deb.debian.org/debian bookworm/main armhf libboost-regex1.74.0 armhf 1.74.0+ds1-20 [432 kB] Get: 109 http://deb.debian.org/debian bookworm/main armhf libicu-dev armhf 72.1-3 [10.1 MB] Get: 110 http://deb.debian.org/debian bookworm/main armhf libboost-regex1.74-dev armhf 1.74.0+ds1-20 [543 kB] Get: 111 http://deb.debian.org/debian bookworm/main armhf libboost-iostreams1.74-dev armhf 1.74.0+ds1-20 [247 kB] Get: 112 http://deb.debian.org/debian bookworm/main armhf libboost-iostreams-dev armhf 1.74.0.3 [4316 B] Get: 113 http://deb.debian.org/debian bookworm/main armhf libboost-math1.74.0 armhf 1.74.0+ds1-20 [324 kB] Get: 114 http://deb.debian.org/debian bookworm/main armhf libboost-math1.74-dev armhf 1.74.0+ds1-20 [383 kB] Get: 115 http://deb.debian.org/debian bookworm/main armhf libboost-math-dev armhf 1.74.0.3 [4532 B] Get: 116 http://deb.debian.org/debian bookworm/main armhf libevent-core-2.1-7 armhf 2.1.12-stable-8 [120 kB] Get: 117 http://deb.debian.org/debian bookworm/main armhf libevent-pthreads-2.1-7 armhf 2.1.12-stable-8 [53.2 kB] Get: 118 http://deb.debian.org/debian bookworm/main armhf librdmacm1 armhf 44.0-2 [60.6 kB] Get: 119 http://deb.debian.org/debian bookworm/main armhf libfabric1 armhf 1.17.0-3 [385 kB] Get: 120 http://deb.debian.org/debian bookworm/main armhf libhwloc15 armhf 2.9.0-1 [127 kB] Get: 121 http://deb.debian.org/debian bookworm/main armhf libmunge2 armhf 0.5.15-2 [15.7 kB] Get: 122 http://deb.debian.org/debian bookworm/main armhf libpciaccess0 armhf 0.17-2 [48.7 kB] Get: 123 http://deb.debian.org/debian bookworm/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 124 http://deb.debian.org/debian bookworm/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 125 http://deb.debian.org/debian bookworm/main armhf libxcb1 armhf 1.15-1 [140 kB] Get: 126 http://deb.debian.org/debian bookworm/main armhf libx11-data all 2:1.8.4-2 [292 kB] Get: 127 http://deb.debian.org/debian bookworm/main armhf libx11-6 armhf 2:1.8.4-2 [695 kB] Get: 128 http://deb.debian.org/debian bookworm/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB] Get: 129 http://deb.debian.org/debian bookworm/main armhf libxnvctrl0 armhf 525.85.05-1 [12.2 kB] Get: 130 http://deb.debian.org/debian bookworm/main armhf ocl-icd-libopencl1 armhf 2.3.1-1 [40.1 kB] Get: 131 http://deb.debian.org/debian bookworm/main armhf libhwloc-plugins armhf 2.9.0-1 [15.9 kB] Get: 132 http://deb.debian.org/debian bookworm/main armhf libpmix2 armhf 4.2.2-1+b1 [553 kB] Get: 133 http://deb.debian.org/debian bookworm/main armhf libopenmpi3 armhf 4.1.4-3+b1 [1849 kB] Get: 134 http://deb.debian.org/debian bookworm/main armhf libboost-mpi1.74.0 armhf 1.74.0+ds1-20 [250 kB] Get: 135 http://deb.debian.org/debian bookworm/main armhf openmpi-common all 4.1.4-3 [167 kB] Get: 136 http://deb.debian.org/debian bookworm/main armhf libnl-3-dev armhf 3.7.0-0.2+b1 [98.4 kB] Get: 137 http://deb.debian.org/debian bookworm/main armhf libnl-route-3-dev armhf 3.7.0-0.2+b1 [183 kB] Get: 138 http://deb.debian.org/debian bookworm/main armhf libibverbs-dev armhf 44.0-2 [195 kB] Get: 139 http://deb.debian.org/debian bookworm/main armhf libnuma1 armhf 2.0.16-1 [17.8 kB] Get: 140 http://deb.debian.org/debian bookworm/main armhf libnuma-dev armhf 2.0.16-1 [33.0 kB] Get: 141 http://deb.debian.org/debian bookworm/main armhf libltdl7 armhf 2.4.7-5 [390 kB] Get: 142 http://deb.debian.org/debian bookworm/main armhf libltdl-dev armhf 2.4.7-5 [162 kB] Get: 143 http://deb.debian.org/debian bookworm/main armhf libhwloc-dev armhf 2.9.0-1 [214 kB] Get: 144 http://deb.debian.org/debian bookworm/main armhf libevent-2.1-7 armhf 2.1.12-stable-8 [161 kB] Get: 145 http://deb.debian.org/debian bookworm/main armhf libevent-extra-2.1-7 armhf 2.1.12-stable-8 [97.5 kB] Get: 146 http://deb.debian.org/debian bookworm/main armhf libevent-openssl-2.1-7 armhf 2.1.12-stable-8 [58.3 kB] Get: 147 http://deb.debian.org/debian bookworm/main armhf libevent-dev armhf 2.1.12-stable-8 [290 kB] Get: 148 http://deb.debian.org/debian bookworm/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [902 kB] Get: 149 http://deb.debian.org/debian bookworm/main armhf libpmix-dev armhf 4.2.2-1+b1 [864 kB] Get: 150 http://deb.debian.org/debian bookworm/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 151 http://deb.debian.org/debian bookworm/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 152 http://deb.debian.org/debian bookworm/main armhf openmpi-bin armhf 4.1.4-3+b1 [194 kB] Get: 153 http://deb.debian.org/debian bookworm/main armhf libopenmpi-dev armhf 4.1.4-3+b1 [920 kB] Get: 154 http://deb.debian.org/debian bookworm/main armhf mpi-default-dev armhf 1.14 [5548 B] Get: 155 http://deb.debian.org/debian bookworm/main armhf libboost-mpi1.74-dev armhf 1.74.0+ds1-20 [278 kB] Get: 156 http://deb.debian.org/debian bookworm/main armhf libboost-mpi-dev armhf 1.74.0.3 [4420 B] Get: 157 http://deb.debian.org/debian bookworm/main armhf libboost-program-options1.74.0 armhf 1.74.0+ds1-20 [311 kB] Get: 158 http://deb.debian.org/debian bookworm/main armhf libboost-program-options1.74-dev armhf 1.74.0+ds1-20 [355 kB] Get: 159 http://deb.debian.org/debian bookworm/main armhf libboost-program-options-dev armhf 1.74.0.3 [4340 B] Get: 160 http://deb.debian.org/debian bookworm/main armhf libboost-serialization-dev armhf 1.74.0.3 [4560 B] Get: 161 http://deb.debian.org/debian bookworm/main armhf libboost-thread1.74.0 armhf 1.74.0+ds1-20 [247 kB] Get: 162 http://deb.debian.org/debian bookworm/main armhf libboost-thread1.74-dev armhf 1.74.0+ds1-20 [262 kB] Get: 163 http://deb.debian.org/debian bookworm/main armhf libboost-thread-dev armhf 1.74.0.3 [4356 B] Get: 164 http://deb.debian.org/debian bookworm/main armhf libboost-timer1.74.0 armhf 1.74.0+ds1-20 [221 kB] Get: 165 http://deb.debian.org/debian bookworm/main armhf libboost-timer1.74-dev armhf 1.74.0+ds1-20 [223 kB] Get: 166 http://deb.debian.org/debian bookworm/main armhf libboost-timer-dev armhf 1.74.0.3 [4456 B] Get: 167 http://deb.debian.org/debian bookworm/main armhf libbtf1 armhf 1:5.12.0+dfsg-2 [24.0 kB] Get: 168 http://deb.debian.org/debian bookworm/main armhf libc6-dbg armhf 2.36-9 [6746 kB] Get: 169 http://deb.debian.org/debian bookworm/main armhf libcamd2 armhf 1:5.12.0+dfsg-2 [30.6 kB] Get: 170 http://deb.debian.org/debian bookworm/main armhf libccolamd2 armhf 1:5.12.0+dfsg-2 [31.7 kB] Get: 171 http://deb.debian.org/debian bookworm/main armhf libcolamd2 armhf 1:5.12.0+dfsg-2 [28.3 kB] Get: 172 http://deb.debian.org/debian bookworm/main armhf libmetis5 armhf 5.1.0.dfsg-7 [137 kB] Get: 173 http://deb.debian.org/debian bookworm/main armhf libcholmod3 armhf 1:5.12.0+dfsg-2 [223 kB] Get: 174 http://deb.debian.org/debian bookworm/main armhf libcombblas1.16.0 armhf 1.6.2-8 [255 kB] Get: 175 http://deb.debian.org/debian bookworm/main armhf libcurl4-openssl-dev armhf 7.88.1-9 [453 kB] Get: 176 http://deb.debian.org/debian bookworm/main armhf libcxsparse3 armhf 1:5.12.0+dfsg-2 [53.1 kB] Get: 177 http://deb.debian.org/debian bookworm/main armhf libhdf5-openmpi-103-1 armhf 1.10.8+repack1-1 [1228 kB] Get: 178 http://deb.debian.org/debian bookworm/main armhf libfftw3-double3 armhf 3.3.10-1 [325 kB] Get: 179 http://deb.debian.org/debian bookworm/main armhf libfftw3-single3 armhf 3.3.10-1 [516 kB] Get: 180 http://deb.debian.org/debian bookworm/main armhf libfftw3-mpi3 armhf 3.3.10-1 [44.9 kB] Get: 181 http://deb.debian.org/debian bookworm/main armhf libptscotch-7.0 armhf 7.0.3-1 [669 kB] Get: 182 http://deb.debian.org/debian bookworm/main armhf libsuperlu-dist8 armhf 8.1.2+dfsg1-1+b1 [478 kB] Get: 183 http://deb.debian.org/debian bookworm/main armhf libhypre-2.26.0 armhf 2.26.0-3 [1192 kB] Get: 184 http://deb.debian.org/debian bookworm/main armhf libklu1 armhf 1:5.12.0+dfsg-2 [52.4 kB] Get: 185 http://deb.debian.org/debian bookworm/main armhf mpi-default-bin armhf 1.14 [4752 B] Get: 186 http://deb.debian.org/debian bookworm/main armhf libscalapack-openmpi2.2 armhf 2.2.1-2+b1 [1246 kB] Get: 187 http://deb.debian.org/debian bookworm/main armhf libmumps-5.5 armhf 5.5.1-1 [1630 kB] Get: 188 http://deb.debian.org/debian bookworm/main armhf libspqr2 armhf 1:5.12.0+dfsg-2 [69.9 kB] Get: 189 http://deb.debian.org/debian bookworm/main armhf libsuperlu5 armhf 5.3.0+dfsg1-2+b1 [139 kB] Get: 190 http://deb.debian.org/debian bookworm/main armhf libumfpack5 armhf 1:5.12.0+dfsg-2 [133 kB] Get: 191 http://deb.debian.org/debian bookworm/main armhf libyaml-0-2 armhf 0.2.5-1 [46.8 kB] Get: 192 http://deb.debian.org/debian bookworm/main armhf libpetsc-real3.18 armhf 3.18.5+dfsg1-1 [5884 kB] Get: 193 http://deb.debian.org/debian bookworm/main armhf libpugixml1v5 armhf 1.13-0.2 [73.7 kB] Get: 194 http://deb.debian.org/debian bookworm/main armhf libparpack2 armhf 3.8.0-3 [80.4 kB] Get: 195 http://deb.debian.org/debian bookworm/main armhf libslepc-real3.18 armhf 3.18.2+dfsg1-2 [1040 kB] Get: 196 http://deb.debian.org/debian bookworm/main armhf libdolfinx-real0.5 armhf 1:0.5.2-2+b1 [543 kB] Get: 197 http://deb.debian.org/debian bookworm/main armhf libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 198 http://deb.debian.org/debian bookworm/main armhf libldl2 armhf 1:5.12.0+dfsg-2 [23.7 kB] Get: 199 http://deb.debian.org/debian bookworm/main armhf libmongoose2 armhf 1:5.12.0+dfsg-2 [43.7 kB] Get: 200 http://deb.debian.org/debian bookworm/main armhf librbio2 armhf 1:5.12.0+dfsg-2 [33.0 kB] Get: 201 http://deb.debian.org/debian bookworm/main armhf libsliplu1 armhf 1:5.12.0+dfsg-2 [49.7 kB] Get: 202 http://deb.debian.org/debian bookworm/main armhf libsuitesparse-dev armhf 1:5.12.0+dfsg-2 [652 kB] Get: 203 http://deb.debian.org/debian bookworm/main armhf libscotch-7.0 armhf 7.0.3-1 [413 kB] Get: 204 http://deb.debian.org/debian bookworm/main armhf libscotch-dev armhf 7.0.3-1 [1593 kB] Get: 205 http://deb.debian.org/debian bookworm/main armhf libptscotch-dev armhf 7.0.3-1 [1375 kB] Get: 206 http://deb.debian.org/debian bookworm/main armhf libscalapack-openmpi-dev armhf 2.2.1-2+b1 [9528 B] Get: 207 http://deb.debian.org/debian bookworm/main armhf libscalapack-mpi-dev armhf 2.2.1-2+b1 [4664 B] Get: 208 http://deb.debian.org/debian bookworm/main armhf libfftw3-bin armhf 3.3.10-1 [40.8 kB] Get: 209 http://deb.debian.org/debian bookworm/main armhf libfftw3-dev armhf 3.3.10-1 [828 kB] Get: 210 http://deb.debian.org/debian bookworm/main armhf libfftw3-mpi-dev armhf 3.3.10-1 [52.0 kB] Get: 211 http://deb.debian.org/debian bookworm/main armhf libssl-dev armhf 3.0.8-1 [2132 kB] Get: 212 http://deb.debian.org/debian bookworm/main armhf opencl-c-headers all 3.0~2023.02.06-1 [43.6 kB] Get: 213 http://deb.debian.org/debian bookworm/main armhf opencl-clhpp-headers all 3.0~2023.02.06-1 [44.4 kB] Get: 214 http://deb.debian.org/debian bookworm/main armhf ocl-icd-opencl-dev armhf 2.3.1-1 [11.6 kB] Get: 215 http://deb.debian.org/debian bookworm/main armhf libhdf5-openmpi-fortran-102 armhf 1.10.8+repack1-1 [82.6 kB] Get: 216 http://deb.debian.org/debian bookworm/main armhf libhdf5-openmpi-hl-100 armhf 1.10.8+repack1-1 [65.4 kB] Get: 217 http://deb.debian.org/debian bookworm/main armhf libhdf5-openmpi-hl-fortran-100 armhf 1.10.8+repack1-1 [38.8 kB] Get: 218 http://deb.debian.org/debian bookworm/main armhf libhdf5-openmpi-cpp-103-1 armhf 1.10.8+repack1-1 [119 kB] Get: 219 http://deb.debian.org/debian bookworm/main armhf libhdf5-openmpi-hl-cpp-100 armhf 1.10.8+repack1-1 [25.2 kB] Get: 220 http://deb.debian.org/debian bookworm/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB] Get: 221 http://deb.debian.org/debian bookworm/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2 [260 kB] Get: 222 http://deb.debian.org/debian bookworm/main armhf libjpeg-dev armhf 1:2.1.5-2 [71.8 kB] Get: 223 http://deb.debian.org/debian bookworm/main armhf libhdf5-openmpi-dev armhf 1.10.8+repack1-1 [2648 kB] Get: 224 http://deb.debian.org/debian bookworm/main armhf libhdf5-mpi-dev armhf 1.10.8+repack1-1 [20.0 kB] Get: 225 http://deb.debian.org/debian bookworm/main armhf libsuperlu-dev armhf 5.3.0+dfsg1-2+b1 [22.4 kB] Get: 226 http://deb.debian.org/debian bookworm/main armhf libsuperlu-dist-dev armhf 8.1.2+dfsg1-1+b1 [815 kB] Get: 227 http://deb.debian.org/debian bookworm/main armhf xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 228 http://deb.debian.org/debian bookworm/main armhf x11proto-dev all 2022.1-1 [599 kB] Get: 229 http://deb.debian.org/debian bookworm/main armhf libxau-dev armhf 1:1.0.9-1 [22.4 kB] Get: 230 http://deb.debian.org/debian bookworm/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.7 kB] Get: 231 http://deb.debian.org/debian bookworm/main armhf xtrans-dev all 1.4.0-1 [98.7 kB] Get: 232 http://deb.debian.org/debian bookworm/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B] Get: 233 http://deb.debian.org/debian bookworm/main armhf libxcb1-dev armhf 1.15-1 [179 kB] Get: 234 http://deb.debian.org/debian bookworm/main armhf libx11-dev armhf 2:1.8.4-2 [777 kB] Get: 235 http://deb.debian.org/debian bookworm/main armhf libyaml-dev armhf 0.2.5-1 [58.3 kB] Get: 236 http://deb.debian.org/debian bookworm/main armhf libpetsc3.18-dev-common all 3.18.5+dfsg1-1 [254 kB] Get: 237 http://deb.debian.org/debian bookworm/main armhf libhypre-dev armhf 2.26.0-3 [1463 kB] Get: 238 http://deb.debian.org/debian bookworm/main armhf libmumps-headers-dev all 5.5.1-1 [35.9 kB] Get: 239 http://deb.debian.org/debian bookworm/main armhf libmumps-dev armhf 5.5.1-1 [1546 kB] Get: 240 http://deb.debian.org/debian bookworm/main armhf valgrind armhf 1:3.19.0-1 [7534 kB] Get: 241 http://deb.debian.org/debian bookworm/main armhf valgrind-mpi armhf 1:3.19.0-1 [136 kB] Get: 242 http://deb.debian.org/debian bookworm/main armhf libpetsc-real3.18-dev armhf 3.18.5+dfsg1-1 [6162 kB] Get: 243 http://deb.debian.org/debian bookworm/main armhf libparpack2-dev armhf 3.8.0-3 [94.8 kB] Get: 244 http://deb.debian.org/debian bookworm/main armhf libslepc-real3.18-dev armhf 3.18.2+dfsg1-2 [4073 kB] Get: 245 http://deb.debian.org/debian bookworm/main armhf libdolfinx-real-dev armhf 1:0.5.2-2+b1 [42.3 kB] Get: 246 http://deb.debian.org/debian bookworm/main armhf libpugixml-dev armhf 1.13-0.2 [97.5 kB] Get: 247 http://deb.debian.org/debian bookworm/main armhf libxml2-dev armhf 2.9.14+dfsg-1.2 [709 kB] Get: 248 http://deb.debian.org/debian bookworm/main armhf python3-cffi-backend armhf 1.15.1-5+b1 [75.1 kB] Get: 249 http://deb.debian.org/debian bookworm/main armhf python3-ply all 3.11-5 [65.8 kB] Get: 250 http://deb.debian.org/debian bookworm/main armhf python3-pycparser all 2.21-1 [78.8 kB] Get: 251 http://deb.debian.org/debian bookworm/main armhf python3-cffi all 1.15.1-5 [86.2 kB] Get: 252 http://deb.debian.org/debian bookworm/main armhf libpython3.11 armhf 3.11.2-6 [1710 kB] Get: 253 http://deb.debian.org/debian bookworm/main armhf libexpat1-dev armhf 2.5.0-1 [134 kB] Get: 254 http://deb.debian.org/debian bookworm/main armhf libpython3.11-dev armhf 3.11.2-6 [3518 kB] Get: 255 http://deb.debian.org/debian bookworm/main armhf libpython3-dev armhf 3.11.2-1+b1 [9556 B] Get: 256 http://deb.debian.org/debian bookworm/main armhf python3.11-dev armhf 3.11.2-6 [615 kB] Get: 257 http://deb.debian.org/debian bookworm/main armhf python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 258 http://deb.debian.org/debian bookworm/main armhf python3-distutils all 3.11.2-3 [131 kB] Get: 259 http://deb.debian.org/debian bookworm/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 260 http://deb.debian.org/debian bookworm/main armhf libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 261 http://deb.debian.org/debian bookworm/main armhf python3-dev armhf 3.11.2-1+b1 [26.2 kB] Get: 262 http://deb.debian.org/debian bookworm/main armhf python3-pkg-resources all 66.1.1-1 [296 kB] Get: 263 http://deb.debian.org/debian bookworm/main armhf python3-numpy armhf 1:1.24.2-1 [4165 kB] Get: 264 http://deb.debian.org/debian bookworm/main armhf python3-ufl all 2022.2.0-2 [175 kB] Get: 265 http://deb.debian.org/debian bookworm/main armhf python3-basix armhf 0.5.1-1+b2 [125 kB] Get: 266 http://deb.debian.org/debian bookworm/main armhf python3-ffcx all 1:0.5.0-3 [103 kB] Get: 267 http://deb.debian.org/debian bookworm/main armhf xtl-dev all 0.7.2-2.1 [89.5 kB] Get: 268 http://deb.debian.org/debian bookworm/main armhf nlohmann-json3-dev all 3.11.2-2 [259 kB] Get: 269 http://deb.debian.org/debian bookworm/main armhf libxtensor-dev armhf 0.24.3-1 [189 kB] Get: 270 http://deb.debian.org/debian bookworm/main armhf libdolfinx-dev armhf 1:0.5.2-2+b1 [155 kB] Get: 271 http://deb.debian.org/debian bookworm/main armhf xtensor-dev all 0.24.3-1 [5372 B] Fetched 163 MB in 6s (27.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19329 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_armhf.deb ... Unpacking libpython3.11-minimal:armhf (3.11.2-6) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.5.0-1_armhf.deb ... Unpacking libexpat1:armhf (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_armhf.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:armhf (3.11.2-6) ... Setting up libexpat1:armhf (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19645 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_armhf.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:armhf. Preparing to unpack .../3-libreadline8_8.2-1.3_armhf.deb ... Unpacking libreadline8:armhf (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:armhf. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_armhf.deb ... Unpacking libpython3.11-stdlib:armhf (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_armhf.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20079 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_armhf.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package libproc2-0:armhf. Preparing to unpack .../001-libproc2-0_2%3a4.0.2-3_armhf.deb ... Unpacking libproc2-0:armhf (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.2-3_armhf.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.44-3_armhf.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../005-libmagic1_1%3a5.44-3_armhf.deb ... Unpacking libmagic1:armhf (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.44-3_armhf.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.21-12_armhf.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../008-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.22.4-10_armhf.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.38.1-5+b1_armhf.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../011-libpipeline1_1.5.7-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.11.2-2_armhf.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../013-libbsd0_0.11.7-2_armhf.deb ... Unpacking libbsd0:armhf (0.11.7-2) ... Selecting previously unselected package libedit2:armhf. Preparing to unpack .../014-libedit2_3.1-20221030-2_armhf.deb ... Unpacking libedit2:armhf (3.1-20221030-2) ... Selecting previously unselected package libcbor0.8:armhf. Preparing to unpack .../015-libcbor0.8_0.8.0-2+b1_armhf.deb ... Unpacking libcbor0.8:armhf (0.8.0-2+b1) ... Selecting previously unselected package libfido2-1:armhf. Preparing to unpack .../016-libfido2-1_1.12.0-2+b1_armhf.deb ... Unpacking libfido2-1:armhf (1.12.0-2+b1) ... Selecting previously unselected package openssh-client. Preparing to unpack .../017-openssh-client_1%3a9.2p1-2_armhf.deb ... Unpacking openssh-client (1:9.2p1-2) ... Selecting previously unselected package m4. Preparing to unpack .../018-m4_1.4.19-3_armhf.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../019-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../020-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../021-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../022-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../023-libicu72_72.1-3_armhf.deb ... Unpacking libicu72:armhf (72.1-3) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../024-libxml2_2.9.14+dfsg-1.2_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.2) ... Selecting previously unselected package libarchive13:armhf. Preparing to unpack .../025-libarchive13_3.6.2-1_armhf.deb ... Unpacking libarchive13:armhf (3.6.2-1) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../026-libbrotli1_1.0.9-2+b6_armhf.deb ... Unpacking libbrotli1:armhf (1.0.9-2+b6) ... Selecting previously unselected package libsasl2-modules-db:armhf. Preparing to unpack .../027-libsasl2-modules-db_2.1.28+dfsg-10_armhf.deb ... Unpacking libsasl2-modules-db:armhf (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:armhf. Preparing to unpack .../028-libsasl2-2_2.1.28+dfsg-10_armhf.deb ... Unpacking libsasl2-2:armhf (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:armhf. Preparing to unpack .../029-libldap-2.5-0_2.5.13+dfsg-5_armhf.deb ... Unpacking libldap-2.5-0:armhf (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:armhf. Preparing to unpack .../030-libnghttp2-14_1.52.0-1_armhf.deb ... Unpacking libnghttp2-14:armhf (1.52.0-1) ... Selecting previously unselected package libpsl5:armhf. Preparing to unpack .../031-libpsl5_0.21.2-1_armhf.deb ... Unpacking libpsl5:armhf (0.21.2-1) ... Selecting previously unselected package librtmp1:armhf. Preparing to unpack .../032-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:armhf. Preparing to unpack .../033-libssh2-1_1.10.0-3+b1_armhf.deb ... Unpacking libssh2-1:armhf (1.10.0-3+b1) ... Selecting previously unselected package libcurl4:armhf. Preparing to unpack .../034-libcurl4_7.88.1-9_armhf.deb ... Unpacking libcurl4:armhf (7.88.1-9) ... Selecting previously unselected package libjsoncpp25:armhf. Preparing to unpack .../035-libjsoncpp25_1.9.5-4_armhf.deb ... Unpacking libjsoncpp25:armhf (1.9.5-4) ... Selecting previously unselected package librhash0:armhf. Preparing to unpack .../036-librhash0_1.4.3-3_armhf.deb ... Unpacking librhash0:armhf (1.4.3-3) ... Selecting previously unselected package libuv1:armhf. Preparing to unpack .../037-libuv1_1.44.2-1_armhf.deb ... Unpacking libuv1:armhf (1.44.2-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../038-cmake-data_3.25.1-1_all.deb ... Unpacking cmake-data (3.25.1-1) ... Selecting previously unselected package cmake. Preparing to unpack .../039-cmake_3.25.1-1_armhf.deb ... Unpacking cmake (3.25.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../040-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../041-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../042-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../043-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../044-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../045-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../046-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../047-libelf1_0.188-2.1_armhf.deb ... Unpacking libelf1:armhf (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../048-dwz_0.15-1_armhf.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package gettext. Preparing to unpack .../049-gettext_0.21-12_armhf.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../050-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../051-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../052-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package fonts-mathjax. Preparing to unpack .../053-fonts-mathjax_2.7.9+dfsg-1_all.deb ... Unpacking fonts-mathjax (2.7.9+dfsg-1) ... Selecting previously unselected package libgfortran5:armhf. Preparing to unpack .../054-libgfortran5_12.2.0-14_armhf.deb ... Unpacking libgfortran5:armhf (12.2.0-14) ... Selecting previously unselected package libgfortran-12-dev:armhf. Preparing to unpack .../055-libgfortran-12-dev_12.2.0-14_armhf.deb ... Unpacking libgfortran-12-dev:armhf (12.2.0-14) ... Selecting previously unselected package gfortran-12. Preparing to unpack .../056-gfortran-12_12.2.0-14_armhf.deb ... Unpacking gfortran-12 (12.2.0-14) ... Selecting previously unselected package gfortran. Preparing to unpack .../057-gfortran_4%3a12.2.0-3_armhf.deb ... Unpacking gfortran (4:12.2.0-3) ... Selecting previously unselected package libnl-3-200:armhf. Preparing to unpack .../058-libnl-3-200_3.7.0-0.2+b1_armhf.deb ... Unpacking libnl-3-200:armhf (3.7.0-0.2+b1) ... Selecting previously unselected package libnl-route-3-200:armhf. Preparing to unpack .../059-libnl-route-3-200_3.7.0-0.2+b1_armhf.deb ... Unpacking libnl-route-3-200:armhf (3.7.0-0.2+b1) ... Selecting previously unselected package libibverbs1:armhf. Preparing to unpack .../060-libibverbs1_44.0-2_armhf.deb ... Unpacking libibverbs1:armhf (44.0-2) ... Selecting previously unselected package ibverbs-providers:armhf. Preparing to unpack .../061-ibverbs-providers_44.0-2_armhf.deb ... Unpacking ibverbs-providers:armhf (44.0-2) ... Selecting previously unselected package icu-devtools. 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Setting up libnghttp2-14:armhf (1.52.0-1) ... Setting up libmagic1:armhf (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up libboost-filesystem1.74.0:armhf (1.74.0+ds1-20) ... Setting up libmetis5:armhf (5.1.0.dfsg-7) ... Setting up file (1:5.44-3) ... Setting up libpthread-stubs0-dev:armhf (0.4-1) ... Setting up libbtf1:armhf (1:5.12.0+dfsg-2) ... Setting up libaec0:armhf (1.0.6-1+b1) ... Setting up libpugixml1v5:armhf (1.13-0.2) ... Setting up libc6-dbg:armhf (2.36-9) ... Setting up libboost-program-options1.74-dev:armhf (1.74.0+ds1-20) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg-10) ... Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libpkgconf3:armhf (1.8.1-1) ... Setting up libuv1:armhf (1.44.2-1) ... Setting up libmunge2 (0.5.15-2) ... Setting up libexpat1-dev:armhf (2.5.0-1) ... Setting up libjpeg62-turbo:armhf (1:2.1.5-2) ... Setting up libboost-program-options-dev:armhf (1.74.0.3) ... Setting up libx11-data (2:1.8.4-2) ... Setting up libjpeg62-turbo-dev:armhf (1:2.1.5-2) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libboost-system1.74-dev:armhf (1.74.0+ds1-20) ... Setting up libboost-regex1.74.0:armhf (1.74.0+ds1-20) ... Setting up libproc2-0:armhf (2:4.0.2-3) ... Setting up libssl-dev:armhf (3.0.8-1) ... Setting up libhwloc15:armhf (2.9.0-1) ... Setting up libevent-core-2.1-7:armhf (2.1.12-stable-8) ... Setting up libevent-2.1-7:armhf (2.1.12-stable-8) ... Setting up autopoint (0.21-12) ... Setting up libjsoncpp25:armhf (1.9.5-4) ... Setting up icu-devtools (72.1-3) ... Setting up xtl-dev (0.7.2-2.1) ... Setting up pkgconf-bin (1.8.1-1) ... Setting up libltdl7:armhf (2.4.7-5) ... Setting up opencl-c-headers (3.0~2023.02.06-1) ... Setting up libfftw3-double3:armhf (3.3.10-1) ... Setting up libsasl2-2:armhf (2.1.28+dfsg-10) ... Setting up libgfortran5:armhf (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up libboost-atomic1.74-dev:armhf (1.74.0+ds1-20) ... Setting up libmumps-headers-dev (5.5.1-1) ... Setting up libboost-math1.74.0:armhf (1.74.0+ds1-20) ... Setting up libboost-serialization1.74.0:armhf (1.74.0+ds1-20) ... Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-1) ... Setting up libnuma1:armhf (2.0.16-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up ocl-icd-libopencl1:armhf (2.3.1-1) ... Setting up librhash0:armhf (1.4.3-3) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up procps (2:4.0.2-3) ... Setting up libnl-3-200:armhf (3.7.0-0.2+b1) ... Setting up openmpi-common (4.1.4-3) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:armhf (1.10.0-3+b1) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up libcxsparse3:armhf (1:5.12.0+dfsg-2) ... Setting up cmake-data (3.25.1-1) ... Setting up libboost-dev:armhf (1.74.0.3) ... Setting up libboost-math1.74-dev:armhf (1.74.0+ds1-20) ... Setting up libboost-filesystem1.74-dev:armhf (1.74.0+ds1-20) ... Setting up nlohmann-json3-dev (3.11.2-2) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libboost-date-time1.74.0:armhf (1.74.0+ds1-20) ... Setting up libfido2-1:armhf (1.12.0-2+b1) ... Setting up valgrind (1:3.19.0-1) ... Setting up libbsd0:armhf (0.11.7-2) ... Setting up libelf1:armhf (0.188-2.1) ... Setting up valgrind-mpi (1:3.19.0-1) ... Setting up readline-common (8.2-1.3) ... Setting up libboost-timer1.74.0:armhf (1.74.0+ds1-20) ... Setting up libicu-dev:armhf (72.1-3) ... Setting up libxml2:armhf (2.9.14+dfsg-1.2) ... Setting up libsuitesparseconfig5:armhf (1:5.12.0+dfsg-2) ... Setting up libboost-filesystem-dev:armhf (1.74.0.3) ... Setting up libblas-dev:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up libsz2:armhf (1.0.6-1+b1) ... Setting up librbio2:armhf (1:5.12.0+dfsg-2) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libboost-thread1.74.0:armhf (1.74.0+ds1-20) ... Setting up libevent-pthreads-2.1-7:armhf (2.1.12-stable-8) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2022.1-1) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libamd2:armhf (1:5.12.0+dfsg-2) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up libevent-extra-2.1-7:armhf (2.1.12-stable-8) ... Setting up liblapack3:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libxcb1:armhf (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libxau-dev:armhf (1:1.0.9-1) ... Setting up libcolamd2:armhf (1:5.12.0+dfsg-2) ... Setting up libyaml-dev:armhf (0.2.5-1) ... Setting up libtool (2.4.7-5) ... Setting up libarchive13:armhf (3.6.2-1) ... Setting up libboost-chrono-dev:armhf (1.74.0.3) ... Setting up libfftw3-bin (3.3.10-1) ... Setting up libboost-math-dev:armhf (1.74.0.3) ... Setting up libedit2:armhf (3.1-20221030-2) ... Setting up libreadline8:armhf (8.2-1.3) ... Setting up libxtensor-dev:armhf (0.24.3-1) ... Setting up libpugixml-dev:armhf (1.13-0.2) ... Setting up libaec-dev:armhf (1.0.6-1+b1) ... Setting up libarpack2:armhf (3.8.0-3) ... Setting up libjpeg-dev:armhf (1:2.1.5-2) ... Setting up libsuperlu5:armhf (5.3.0+dfsg1-2+b1) ... Setting up libevent-openssl-2.1-7:armhf (2.1.12-stable-8) ... Setting up libgfortran-12-dev:armhf (12.2.0-14) ... Setting up libldap-2.5-0:armhf (2.5.13+dfsg-5) ... Setting up pkgconf:armhf (1.8.1-1) ... Setting up xtensor-dev (0.24.3-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnuma-dev:armhf (2.0.16-1) ... Setting up libnl-route-3-200:armhf (3.7.0-0.2+b1) ... Setting up libsliplu1:armhf (1:5.12.0+dfsg-2) ... Setting up dh-autoreconf (20) ... Setting up libltdl-dev:armhf (2.4.7-5) ... Setting up libcamd2:armhf (1:5.12.0+dfsg-2) ... Setting up libmongoose2:armhf (1:5.12.0+dfsg-2) ... Setting up libxdmcp-dev:armhf (1:1.1.2-3) ... Setting up gfortran-12 (12.2.0-14) ... Setting up libxml2-dev:armhf (2.9.14+dfsg-1.2) ... Setting up libbasix0.5:armhf (0.5.1-1+b2) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up opencl-clhpp-headers (3.0~2023.02.06-1) ... Setting up libevent-dev (2.1.12-stable-8) ... Setting up liblapack-dev:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libeigen3-dev (3.4.0-4) ... Setting up libboost-timer1.74-dev:armhf (1.74.0+ds1-20) ... Setting up pkg-config:armhf (1.8.1-1) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up ocl-icd-opencl-dev:armhf (2.3.1-1) ... Setting up libboost-serialization1.74-dev:armhf (1.74.0+ds1-20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up libboost-regex1.74-dev:armhf (1.74.0+ds1-20) ... Setting up libnl-3-dev:armhf (3.7.0-0.2+b1) ... Setting up groff-base (1.22.4-10) ... Setting up libklu1:armhf (1:5.12.0+dfsg-2) ... Setting up libccolamd2:armhf (1:5.12.0+dfsg-2) ... Setting up libcurl4:armhf (7.88.1-9) ... Setting up libx11-6:armhf (2:1.8.4-2) ... Setting up libhwloc-dev:armhf (2.9.0-1) ... Setting up libsuperlu-dev:armhf (5.3.0+dfsg1-2+b1) ... Setting up libbasix-dev:armhf (0.5.1-1+b2) ... Setting up libfftw3-dev:armhf (3.3.10-1) ... Setting up libcholmod3:armhf (1:5.12.0+dfsg-2) ... Setting up libboost-timer-dev:armhf (1.74.0.3) ... Setting up libspqr2:armhf (1:5.12.0+dfsg-2) ... Setting up libibverbs1:armhf (44.0-2) ... Setting up libarpack2-dev:armhf (3.8.0-3) ... Setting up libxcb1-dev:armhf (1.15-1) ... Setting up ibverbs-providers:armhf (44.0-2) ... Setting up openssh-client (1:9.2p1-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:armhf (3.11.2-6) ... Setting up libx11-dev:armhf (2:1.8.4-2) ... Setting up libxext6:armhf (2:1.3.4-1+b1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:12.2.0-3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libxnvctrl0:armhf (525.85.05-1) ... Setting up libboost-iostreams1.74-dev:armhf (1.74.0+ds1-20) ... Setting up libnl-route-3-dev:armhf (3.7.0-0.2+b1) ... Setting up libboost-date-time1.74-dev:armhf (1.74.0+ds1-20) ... Setting up libumfpack5:armhf (1:5.12.0+dfsg-2) ... Setting up libcurl4-openssl-dev:armhf (7.88.1-9) ... Setting up libboost-serialization-dev:armhf (1.74.0.3) ... Setting up cmake (3.25.1-1) ... Setting up libboost-thread1.74-dev:armhf (1.74.0+ds1-20) ... Setting up libboost-thread-dev:armhf (1.74.0.3) ... Setting up libpython3-stdlib:armhf (3.11.2-1+b1) ... Setting up librdmacm1:armhf (44.0-2) ... Setting up python3.11 (3.11.2-6) ... Setting up libpython3.11:armhf (3.11.2-6) ... Setting up libsuitesparse-dev:armhf (1:5.12.0+dfsg-2) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up libboost-iostreams-dev:armhf (1.74.0.3) ... Setting up libibverbs-dev:armhf (44.0-2) ... Setting up libhwloc-plugins:armhf (2.9.0-1) ... Setting up libpython3.11-dev:armhf (3.11.2-6) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-cffi-backend:armhf (1.15.1-5+b1) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up libfabric1:armhf (1.17.0-3) ... Setting up libpython3-dev:armhf (3.11.2-1+b1) ... Setting up libpmix2:armhf (4.2.2-1+b1) ... Setting up python3.11-dev (3.11.2-6) ... Setting up libopenmpi3:armhf (4.1.4-3+b1) ... Setting up python3-ply (3.11-5) ... Setting up libboost-mpi1.74.0 (1.74.0+ds1-20) ... Setting up libfftw3-mpi3:armhf (3.3.10-1) ... Setting up python3-pycparser (2.21-1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up libpmix-dev:armhf (4.2.2-1+b1) ... Setting up openmpi-bin (4.1.4-3+b1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up python3-basix (0.5.1-1+b2) ... Setting up libhdf5-openmpi-103-1:armhf (1.10.8+repack1-1) ... Setting up libptscotch-7.0:armhf (7.0.3-1) ... Setting up libparpack2:armhf (3.8.0-3) ... Setting up libcombblas1.16.0:armhf (1.6.2-8) ... Setting up python3-ufl (2022.2.0-2) ... Setting up libsuperlu-dist8:armhf (8.1.2+dfsg1-1+b1) ... Setting up python3-cffi (1.15.1-5) ... Setting up libfftw3-mpi-dev:armhf (3.3.10-1) ... Setting up mpi-default-bin (1.14) ... Setting up libsuperlu-dist-dev:armhf (8.1.2+dfsg1-1+b1) ... Setting up python3-ffcx (1:0.5.0-3) ... Setting up libhdf5-openmpi-fortran-102:armhf (1.10.8+repack1-1) ... Setting up libhdf5-openmpi-hl-100:armhf (1.10.8+repack1-1) ... Setting up libopenmpi-dev:armhf (4.1.4-3+b1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode Setting up libhdf5-openmpi-cpp-103-1:armhf (1.10.8+repack1-1) ... Setting up libhdf5-openmpi-hl-cpp-100:armhf (1.10.8+repack1-1) ... Setting up libscalapack-openmpi2.2:armhf (2.2.1-2+b1) ... Setting up libhdf5-openmpi-hl-fortran-100:armhf (1.10.8+repack1-1) ... Setting up libhypre-2.26.0:armhf (2.26.0-3) ... Setting up libmumps-5.5:armhf (5.5.1-1) ... Setting up libpetsc-real3.18:armhf (3.18.5+dfsg1-1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/libpetsc_real.so.3.18.5 to provide /usr/lib/arm-linux-gnueabihf/libpetsc.so.3.18 (libpetsc.so.3.18) in auto mode Setting up libslepc-real3.18 (3.18.2+dfsg1-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/libslepc_real.so.3.18.2 to provide /usr/lib/arm-linux-gnueabihf/libslepc.so.3.18 (libslepc.so.3.18) in auto mode Setting up libscalapack-openmpi-dev:armhf (2.2.1-2+b1) ... Setting up mpi-default-dev (1.14) ... Setting up libdolfinx-real0.5:armhf (1:0.5.2-2+b1) ... Setting up libscalapack-mpi-dev:armhf (2.2.1-2+b1) ... Setting up libhdf5-openmpi-dev (1.10.8+repack1-1) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-mpi.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libmumps-dev:armhf (5.5.1-1) ... Setting up libscotch-dev (7.0.3-1) ... Setting up libboost-mpi1.74-dev (1.74.0+ds1-20) ... Setting up libparpack2-dev:armhf (3.8.0-3) ... Setting up libhypre-dev:armhf (2.26.0-3) ... Setting up libptscotch-dev (7.0.3-1) ... Setting up libboost-mpi-dev (1.74.0.3) ... Setting up libhdf5-mpi-dev (1.10.8+repack1-1) ... Setting up libpetsc3.18-dev-common (3.18.5+dfsg1-1) ... Setting up libpetsc-real3.18-dev:armhf (3.18.5+dfsg1-1) ... update-alternatives: error: no alternatives for petsc update-alternatives: using /usr/lib/petscdir/petsc3.18/arm-linux-gnueabihf-real to provide /usr/lib/petsc (petsc) in auto mode update-alternatives: using /usr/lib/arm-linux-gnueabihf/libpetsc_real.so.3.18.5 to provide /usr/lib/arm-linux-gnueabihf/libpetsc_real.so (libpetsc_real.so) in auto mode update-alternatives: using /usr/lib/petscdir/petsc3.18/arm-linux-gnueabihf-real to provide /usr/lib/petscdir/3.18 (petsc3.18) in auto mode Setting up libslepc-real3.18-dev (3.18.2+dfsg1-2) ... update-alternatives: error: no alternatives for slepc update-alternatives: using /usr/lib/slepcdir/slepc3.18/arm-linux-gnueabihf-real to provide /usr/lib/slepc (slepc) in auto mode update-alternatives: using /usr/lib/arm-linux-gnueabihf/libslepc_real.so.3.18.2 to provide /usr/lib/arm-linux-gnueabihf/libslepc_real.so (libslepc_real.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc3.18/arm-linux-gnueabihf-real to provide /usr/lib/slepcdir/3.18 (slepc3.18) in auto mode Setting up libdolfinx-real-dev:armhf (1:0.5.2-2+b1) ... Setting up libdolfinx-dev:armhf (1:0.5.2-2+b1) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fenicsx-performance-tests_0.5.0~git20220731.821823b-1_source.changes dpkg-buildpackage: info: source package fenicsx-performance-tests dpkg-buildpackage: info: source version 0.5.0~git20220731.821823b-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem=cmake --sourcedirectory=src dh_auto_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_clean -O--buildsystem=cmake -O--sourcedirectory=src debian/rules binary dh binary --buildsystem=cmake --sourcedirectory=src dh_update_autotools_config -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf -O--buildsystem=cmake -O--sourcedirectory=src debian/rules override_dh_auto_configure make[1]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b' dh_auto_configure -- -D CMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -D CMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF ../src -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost 1.74.0 at /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer;filesystem -- Found boost_headers 1.74.0 at /usr/lib/arm-linux-gnueabihf/cmake/boost_headers-1.74.0 -- Found boost_timer 1.74.0 at /usr/lib/arm-linux-gnueabihf/cmake/boost_timer-1.74.0 -- [x] libboost_timer.so.1.74.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: chrono;headers -- Found boost_chrono 1.74.0 at /usr/lib/arm-linux-gnueabihf/cmake/boost_chrono-1.74.0 -- [x] libboost_chrono.so.1.74.0 -- [ ] libboost_chrono.a -- Adding boost_chrono dependencies: headers -- Found boost_filesystem 1.74.0 at /usr/lib/arm-linux-gnueabihf/cmake/boost_filesystem-1.74.0 -- [x] libboost_filesystem.so.1.74.0 -- [ ] libboost_filesystem.a -- Adding boost_filesystem dependencies: headers -- Found Boost: /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: timer filesystem -- Performing Test arch_native_supported -- Performing Test arch_native_supported - Success -- Found Python3: /usr/bin/python3 (found version "3.11.2") found components: Interpreter -- Adding /usr/lib/python3/dist-packages/basix to Basix search hints -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/arm-linux-gnueabihf/hdf5/openmpi/libhdf5.so;/usr/lib/arm-linux-gnueabihf/libcrypto.so;/usr/lib/arm-linux-gnueabihf/libcurl.so;/usr/lib/arm-linux-gnueabihf/libsz.so;/usr/lib/arm-linux-gnueabihf/libz.so;/usr/lib/arm-linux-gnueabihf/libdl.a;/usr/lib/arm-linux-gnueabihf/libm.so (found version "1.10.8") found components: C -- HDF5_DIR: HDF5_DIR-NOTFOUND -- HDF5_DEFINITIONS: -D_FILE_OFFSET_BITS=64 -- HDF5_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_LIBRARIES: /usr/lib/arm-linux-gnueabihf/hdf5/openmpi/libhdf5.so;/usr/lib/arm-linux-gnueabihf/libcrypto.so;/usr/lib/arm-linux-gnueabihf/libcurl.so;/usr/lib/arm-linux-gnueabihf/libsz.so;/usr/lib/arm-linux-gnueabihf/libz.so;/usr/lib/arm-linux-gnueabihf/libdl.a;/usr/lib/arm-linux-gnueabihf/libm.so -- HDF5_HL_LIBRARIES: -- HDF5_C_DEFINITIONS: -D_FILE_OFFSET_BITS=64 -- HDF5_C_INCLUDE_DIR: -- HDF5_C_INCLUDE_DIRS: /usr/include/hdf5/openmpi -- HDF5_C_LIBRARY: -- HDF5_C_LIBRARIES: /usr/lib/arm-linux-gnueabihf/hdf5/openmpi/libhdf5.so;/usr/lib/arm-linux-gnueabihf/libcrypto.so;/usr/lib/arm-linux-gnueabihf/libcurl.so;/usr/lib/arm-linux-gnueabihf/libsz.so;/usr/lib/arm-linux-gnueabihf/libz.so;/usr/lib/arm-linux-gnueabihf/libdl.a;/usr/lib/arm-linux-gnueabihf/libm.so -- HDF5_C_HL_LIBRARY: -- HDF5_C_HL_LIBRARIES: -- Defined targets (if any): -- ... hdf5::hdf5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'PETSc;petsc' -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'SLEPc;slepc' -- Found Boost 1.74.0 at /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS program_options -- Found boost_program_options 1.74.0 at /usr/lib/arm-linux-gnueabihf/cmake/boost_program_options-1.74.0 -- [x] libboost_program_options.so.1.74.0 -- [ ] libboost_program_options.a -- Adding boost_program_options dependencies: headers -- Found Boost: /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: program_options -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf make[1]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b' dh_auto_build -O--buildsystem=cmake -O--sourcedirectory=src cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf' /usr/bin/cmake -S"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -B"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf/CMakeFiles" "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/depend make[3]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf' [ 10%] Generating Poisson.c ffcx /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/Poisson.py [ 20%] Generating Elasticity.c ffcx /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/Elasticity.py cd "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf" "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf" "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf/CMakeFiles/dolfinx-scaling-test.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/build make[3]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf' [ 30%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.5.2\" -DHAS_PTSCOTCH -DHAS_SLEPC -D_FILE_OFFSET_BITS=64 -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf" -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/arm-linux-gnueabihf-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/arm-linux-gnueabihf-real/include -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -c "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/mesh.cpp" [ 40%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.5.2\" -DHAS_PTSCOTCH -DHAS_SLEPC -D_FILE_OFFSET_BITS=64 -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf" -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/arm-linux-gnueabihf-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/arm-linux-gnueabihf-real/include -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -c "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/main.cpp" [ 50%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.5.2\" -DHAS_PTSCOTCH -DHAS_SLEPC -D_FILE_OFFSET_BITS=64 -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf" -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/arm-linux-gnueabihf-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/arm-linux-gnueabihf-real/include -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -c "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/elasticity_problem.cpp" /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/mesh.cpp: In function 'std::shared_ptr create_spoke_mesh(MPI_Comm, std::size_t, bool, std::size_t)': /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/mesh.cpp:342:79: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 342 | auto mesh = std::make_shared(dolfinx::mesh::create_mesh( | ~~~~~~~~~~~~~~~~~~~~~~~~~~^ 343 | comm, | ~~~~~ 344 | dolfinx::graph::AdjacencyList(std::move(topo), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 | std::move(offsets)), | ~~~~~~~~~~~~~~~~~~~~ 346 | element, x, {x.size() / 3, 3}, dolfinx::mesh::GhostMode::none)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 60%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.5.2\" -DHAS_PTSCOTCH -DHAS_SLEPC -D_FILE_OFFSET_BITS=64 -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf" -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/arm-linux-gnueabihf-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/arm-linux-gnueabihf-real/include -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -c "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/poisson_problem.cpp" [ 70%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.5.2\" -DHAS_PTSCOTCH -DHAS_SLEPC -D_FILE_OFFSET_BITS=64 -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf" -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/arm-linux-gnueabihf-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/arm-linux-gnueabihf-real/include -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o -MF CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o.d -o CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o -c "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/mem.cpp" [ 80%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o /usr/bin/cc -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.5.2\" -DHAS_PTSCOTCH -DHAS_SLEPC -D_FILE_OFFSET_BITS=64 -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf" -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/arm-linux-gnueabihf-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/arm-linux-gnueabihf-real/include -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o -MF CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o.d -o CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o -c "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf/Elasticity.c" [ 90%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o /usr/bin/cc -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"0.5.2\" -DHAS_PTSCOTCH -DHAS_SLEPC -D_FILE_OFFSET_BITS=64 -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf" -I"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/petscdir/petsc3.18/arm-linux-gnueabihf-real/include -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/slepcdir/slepc3.18/arm-linux-gnueabihf-real/include -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -MF CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o.d -o CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -c "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf/Poisson.c" In file included from /usr/include/dolfinx/fem/CoordinateElement.h:15, from /usr/include/dolfinx/fem/interpolate.h:10, from /usr/include/dolfinx/fem/Function.h:12, from /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/elasticity_problem.h:9, from /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/elasticity_problem.cpp:7: /usr/include/dolfinx/common/math.h: In function 'auto dolfinx::math::det(Matrix) [with Matrix = std::experimental::mdspan >]': /usr/include/dolfinx/common/math.h:85:6: note: parameter passing for argument of type 'std::experimental::mdspan >' changed in GCC 7.1 85 | auto det(Matrix A) | ^~~ /usr/include/dolfinx/common/math.h: In function 'void dolfinx::math::inv(U, V) [with U = std::experimental::mdspan >; V = std::experimental::mdspan >]': /usr/include/dolfinx/common/math.h:123:6: note: parameter passing for argument of type 'std::experimental::mdspan >' changed in GCC 7.1 123 | void inv(U A, V B) | ^~~ /usr/include/dolfinx/common/math.h:123:6: note: parameter passing for argument of type 'std::experimental::mdspan >' changed in GCC 7.1 /usr/include/dolfinx/common/math.h: In function 'void dolfinx::math::inv(U, V) [with U = std::experimental::mdspan, std::experimental::layout_right, std::experimental::default_accessor >; V = std::experimental::mdspan, std::experimental::layout_right, std::experimental::default_accessor >]': /usr/include/dolfinx/common/math.h:123:6: note: parameter passing for argument of type 'std::experimental::mdspan, std::experimental::layout_right, std::experimental::default_accessor >' changed in GCC 7.1 /usr/include/dolfinx/common/math.h:123:6: note: parameter passing for argument of type 'std::experimental::mdspan, std::experimental::layout_right, std::experimental::default_accessor >' changed in GCC 7.1 /usr/include/dolfinx/common/math.h: In function 'void dolfinx::math::pinv(U, V) [with U = std::experimental::mdspan >; V = std::experimental::mdspan >]': /usr/include/dolfinx/common/math.h:210:6: note: parameter passing for argument of type 'std::experimental::mdspan >' changed in GCC 7.1 210 | void pinv(U A, V P) | ^~~~ /usr/include/dolfinx/common/math.h:210:6: note: parameter passing for argument of type 'std::experimental::mdspan >' changed in GCC 7.1 /usr/include/dolfinx/common/math.h:239:23: note: parameter passing for argument of type 'std::experimental::mdspan, std::experimental::layout_right, std::experimental::default_accessor >' changed in GCC 7.1 239 | dolfinx::math::inv(ATA, Inv); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/dolfinx/fem/interpolate.h: In function 'void dolfinx::fem::interpolate(Function&, std::span, std::array, std::span) [with T = double]': /usr/include/dolfinx/fem/interpolate.h:421:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 421 | void interpolate(Function& u, std::span f, | ^~~~~~~~~~~ /usr/include/dolfinx/fem/interpolate.h:607:18: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 607 | cmap.tabulate(1, X, Xshape, phi_b); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In static member function 'static void dolfinx::fem::CoordinateElement::compute_jacobian_inverse(const U&, V&&) [with U = std::experimental::mdspan >; V = std::experimental::mdspan >&]', inlined from 'static void dolfinx::fem::CoordinateElement::compute_jacobian_inverse(const U&, V&&) [with U = std::experimental::mdspan >; V = std::experimental::mdspan >&]' at /usr/include/dolfinx/fem/CoordinateElement.h:109:15, inlined from 'void dolfinx::fem::interpolate(Function&, std::span, std::array, std::span) [with T = double]' at /usr/include/dolfinx/fem/interpolate.h:650:38: /usr/include/dolfinx/fem/CoordinateElement.h:114:16: note: parameter passing for argument of type 'std::experimental::mdspan >' changed in GCC 7.1 114 | math::inv(J, K); | ~~~~~~~~~^~~~~~ /usr/include/dolfinx/fem/CoordinateElement.h:114:16: note: parameter passing for argument of type 'std::experimental::mdspan >' changed in GCC 7.1 In static member function 'static void dolfinx::fem::CoordinateElement::compute_jacobian_inverse(const U&, V&&) [with U = std::experimental::mdspan >; V = std::experimental::mdspan >&]', inlined from 'void dolfinx::fem::interpolate(Function&, std::span, std::array, std::span) [with T = double]' at /usr/include/dolfinx/fem/interpolate.h:650:38: /usr/include/dolfinx/fem/CoordinateElement.h:116:17: note: parameter passing for argument of type 'std::experimental::mdspan >' changed in GCC 7.1 116 | math::pinv(J, K); | ~~~~~~~~~~^~~~~~ /usr/include/dolfinx/fem/CoordinateElement.h:116:17: note: parameter passing for argument of type 'std::experimental::mdspan >' changed in GCC 7.1 /usr/include/dolfinx/fem/Function.h: In member function 'void dolfinx::fem::Function::interpolate(const std::function >, xt::layout_type::row_major, xt::svector >::size_type, 4, std::allocator::size_type>, true>, xt::xtensor_expression_tag>(const xt::xtensor_container >, 2, xt::layout_type::row_major, xt::xtensor_expression_tag>&)>&, std::span) [with T = double]': /usr/include/dolfinx/fem/Function.h:216:21: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 216 | fem::interpolate(*this, std::span(fx.data(), fx.size()), fshape, | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 | cells); | ~~~~~~ In file included from /usr/include/dolfinx/fem/CoordinateElement.h:15, from /usr/include/dolfinx/fem/interpolate.h:10, from /usr/include/dolfinx/fem/Function.h:12, from /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/poisson_problem.h:9, from /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src/poisson_problem.cpp:7: /usr/include/dolfinx/common/math.h: In function 'auto dolfinx::math::det(Matrix) [with Matrix = std::experimental::mdspan >]': /usr/include/dolfinx/common/math.h:85:6: note: parameter passing for argument of type 'std::experimental::mdspan >' changed in GCC 7.1 85 | auto det(Matrix A) | ^~~ /usr/include/dolfinx/common/math.h: In function 'void dolfinx::math::inv(U, V) [with U = std::experimental::mdspan >; V = std::experimental::mdspan >]': /usr/include/dolfinx/common/math.h:123:6: note: parameter passing for argument of type 'std::experimental::mdspan >' changed in GCC 7.1 123 | void inv(U A, V B) | ^~~ /usr/include/dolfinx/common/math.h:123:6: note: parameter passing for argument of type 'std::experimental::mdspan >' changed in GCC 7.1 /usr/include/dolfinx/common/math.h: In function 'void dolfinx::math::inv(U, V) [with U = std::experimental::mdspan, std::experimental::layout_right, std::experimental::default_accessor >; V = std::experimental::mdspan, std::experimental::layout_right, std::experimental::default_accessor >]': /usr/include/dolfinx/common/math.h:123:6: note: parameter passing for argument of type 'std::experimental::mdspan, std::experimental::layout_right, std::experimental::default_accessor >' changed in GCC 7.1 /usr/include/dolfinx/common/math.h:123:6: note: parameter passing for argument of type 'std::experimental::mdspan, std::experimental::layout_right, std::experimental::default_accessor >' changed in GCC 7.1 /usr/include/dolfinx/common/math.h: In function 'void dolfinx::math::pinv(U, V) [with U = std::experimental::mdspan >; V = std::experimental::mdspan >]': /usr/include/dolfinx/common/math.h:210:6: note: parameter passing for argument of type 'std::experimental::mdspan >' changed in GCC 7.1 210 | void pinv(U A, V P) | ^~~~ /usr/include/dolfinx/common/math.h:210:6: note: parameter passing for argument of type 'std::experimental::mdspan >' changed in GCC 7.1 /usr/include/dolfinx/common/math.h:239:23: note: parameter passing for argument of type 'std::experimental::mdspan, std::experimental::layout_right, std::experimental::default_accessor >' changed in GCC 7.1 239 | dolfinx::math::inv(ATA, Inv); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/dolfinx/fem/interpolate.h: In function 'void dolfinx::fem::interpolate(Function&, std::span, std::array, std::span) [with T = double]': /usr/include/dolfinx/fem/interpolate.h:421:6: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 421 | void interpolate(Function& u, std::span f, | ^~~~~~~~~~~ /usr/include/dolfinx/fem/interpolate.h:607:18: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 607 | cmap.tabulate(1, X, Xshape, phi_b); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In static member function 'static void dolfinx::fem::CoordinateElement::compute_jacobian_inverse(const U&, V&&) [with U = std::experimental::mdspan >; V = std::experimental::mdspan >&]', inlined from 'static void dolfinx::fem::CoordinateElement::compute_jacobian_inverse(const U&, V&&) [with U = std::experimental::mdspan >; V = std::experimental::mdspan >&]' at /usr/include/dolfinx/fem/CoordinateElement.h:109:15, inlined from 'void dolfinx::fem::interpolate(Function&, std::span, std::array, std::span) [with T = double]' at /usr/include/dolfinx/fem/interpolate.h:650:38: /usr/include/dolfinx/fem/CoordinateElement.h:114:16: note: parameter passing for argument of type 'std::experimental::mdspan >' changed in GCC 7.1 114 | math::inv(J, K); | ~~~~~~~~~^~~~~~ /usr/include/dolfinx/fem/CoordinateElement.h:114:16: note: parameter passing for argument of type 'std::experimental::mdspan >' changed in GCC 7.1 In static member function 'static void dolfinx::fem::CoordinateElement::compute_jacobian_inverse(const U&, V&&) [with U = std::experimental::mdspan >; V = std::experimental::mdspan >&]', inlined from 'void dolfinx::fem::interpolate(Function&, std::span, std::array, std::span) [with T = double]' at /usr/include/dolfinx/fem/interpolate.h:650:38: /usr/include/dolfinx/fem/CoordinateElement.h:116:17: note: parameter passing for argument of type 'std::experimental::mdspan >' changed in GCC 7.1 116 | math::pinv(J, K); | ~~~~~~~~~~^~~~~~ /usr/include/dolfinx/fem/CoordinateElement.h:116:17: note: parameter passing for argument of type 'std::experimental::mdspan >' changed in GCC 7.1 /usr/include/dolfinx/fem/Function.h: In member function 'void dolfinx::fem::Function::interpolate(const std::function >, xt::layout_type::row_major, xt::svector >::size_type, 4, std::allocator::size_type>, true>, xt::xtensor_expression_tag>(const xt::xtensor_container >, 2, xt::layout_type::row_major, xt::xtensor_expression_tag>&)>&, std::span) [with T = double]': /usr/include/dolfinx/fem/Function.h:216:21: note: parameter passing for argument of type 'std::span' changed in GCC 7.1 216 | fem::interpolate(*this, std::span(fx.data(), fx.size()), fshape, | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 | cells); | ~~~~~~ [100%] Linking CXX executable dolfinx-scaling-test /usr/bin/cmake -E cmake_link_script CMakeFiles/dolfinx-scaling-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/fenicsx-performance-tests-0.5.0~git20220731.821823b=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro "CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/mem.cpp.o" "CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o" "CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o" -o dolfinx-scaling-test /usr/lib/arm-linux-gnueabihf/libdolfinx_real.so.0.5.2 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libpugixml.so.1.13 /usr/lib/arm-linux-gnueabihf/libbasix.so.0.5.1 /usr/lib/arm-linux-gnueabihf/libboost_timer.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so /usr/lib/arm-linux-gnueabihf/hdf5/openmpi/libhdf5.so /usr/lib/slepcdir/slepc3.18/arm-linux-gnueabihf-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.18/arm-linux-gnueabihf-real/lib/libpetsc_real.so make[3]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf' [100%] Built target dolfinx-scaling-test make[2]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start "/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf/CMakeFiles" 0 make[1]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf' debian/rules override_dh_auto_test make[1]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b' debian/tests/run-dolfinx-scaling-test -p /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf ==== elasticity weak scaling (3 processes with ndofs=10000) ==== 2023-05-15 13:41:00.181 ( 0.183s) [RANK: 0 ] utils.cpp:612 INFO| Compute partition of cells across ranks 2023-05-15 13:41:00.181 ( 0.183s) [RANK: 0 ] graphbuild.cpp:533 INFO| Building mesh dual graph 2023-05-15 13:41:00.181 ( 0.183s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2023-05-15 13:41:00.228 ( 0.230s) [RANK: 0 ] graphbuild.cpp:89 INFO| Build nonlocal part of mesh dual graph 2023-05-15 13:41:00.273 ( 0.275s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:00.273 ( 0.275s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:00.273 ( 0.275s) [RANK: 0 ] graphbuild.cpp:203 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 2023-05-15 13:41:00.283 ( 0.285s) [RANK: 0 ] graphbuild.cpp:545 INFO| Graph edges (local: 66332, non-local: 962) 2023-05-15 13:41:00.283 ( 0.285s) [RANK: 0 ] partitioners.cpp:316 INFO| Compute graph partition using PT-SCOTCH 2023-05-15 13:41:10.661 ( 10.663s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2023-05-15 13:41:10.662 ( 10.664s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2023-05-15 13:41:10.666 ( 10.668s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2023-05-15 13:41:10.715 ( 10.716s) [RANK: 0 ] ordering.cpp:202 INFO| GPS pseudo-diameter:(121) 645-16278 2023-05-15 13:41:10.721 ( 10.723s) [RANK: 0 ] Topology.cpp:923 INFO| Create topology 2023-05-15 13:41:10.726 ( 10.728s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2023-05-15 13:41:10.726 ( 10.728s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2023-05-15 13:41:10.743 ( 10.745s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:10.744 ( 10.746s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:10.745 ( 10.746s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:10.745 ( 10.747s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:10.749 ( 10.751s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:10.749 ( 10.751s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:10.749 ( 10.751s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-15 13:41:10.749 ( 10.751s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-15 13:41:10.750 ( 10.752s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:10.750 ( 10.752s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:10.755 ( 10.757s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-15 13:41:10.755 ( 10.757s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-15 13:41:10.755 ( 10.757s) [RANK: 0 ] MPI.h:368 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 2023-05-15 13:41:10.756 ( 10.758s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:10.756 ( 10.758s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:10.756 ( 10.758s) [RANK: 0 ] MPI.h:500 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 UnitCube (24x19x19) to be refined 0 times 2023-05-15 13:41:10.760 ( 10.762s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 2 2023-05-15 13:41:10.778 ( 10.779s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:10.779 ( 10.780s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:10.857 ( 10.858s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:10.857 ( 10.859s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:10.859 ( 10.861s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2023-05-15 13:41:10.859 ( 10.861s) [RANK: 0 ]topologycomputation.cpp:650 INFO| Computing mesh connectivity 2 - 3 from transpose. 2023-05-15 13:41:10.862 ( 10.864s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 0 2023-05-15 13:41:10.866 ( 10.868s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:10.866 ( 10.868s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:10.867 ( 10.869s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:10.867 ( 10.869s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:10.868 ( 10.869s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-15 13:41:10.868 ( 10.869s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-15 13:41:10.868 ( 10.870s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:10.868 ( 10.870s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:10.870 ( 10.871s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2023-05-15 13:41:10.870 ( 10.872s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2023-05-15 13:41:10.870 ( 10.872s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 0 2023-05-15 13:41:10.871 ( 10.873s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2023-05-15 13:41:10.917 ( 10.919s) [RANK: 0 ] SparsityPattern.cpp:389 INFO| Column ghost size increased from 221 to 540 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.5.2 dolfinx hash: debian_1:0.5.2-2+b1 ufl hash: da4f06cb7b24fd71359bedaeafbca801c698ea33 petsc version: Petsc Release Version 3.18.5, Feb 27, 2023 Problem type: elasticity Scaling type: weak Num processes: 3 Num cells: 51984 (52 thousand) Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- 2023-05-15 13:41:11.264 ( 11.266s) [RANK: 0 ] petsc.cpp:677 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = -1. -1. -1. Threshold scaling factor for each level not specified = 1. AGG specific options Number of levels to square graph 1 Number smoothing steps 1 Complexity: grid = 1.0636 operator = 1.25273 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 3 MPI processes type: bjacobi number of blocks = 3 Local solver information for first block is in the following KSP and PC objects on rank 0: Use -mg_coarse_ksp_view ::ascii_info_detail to display information for all blocks KSP Object: (mg_coarse_sub_) 1 MPI process type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI process type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.02381 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=204, cols=204, bs=6 package used to perform factorization: petsc total: nonzeros=40248, allocated nonzeros=40248 using I-node routines: found 48 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=204, cols=204, bs=6 total: nonzeros=39312, allocated nonzeros=39312 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 57 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=204, cols=204, bs=6 total: nonzeros=39312, allocated nonzeros=39312 total number of mallocs used during MatSetValues calls=0 using I-node (on process 0) routines: found 57 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev eigenvalue targets used: min 0.207028, max 2.27731 eigenvalues provided (min 1.03041e-06, max 2.07028) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=1704, cols=1704, bs=6 total: nonzeros=276984, allocated nonzeros=276984 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 172 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev eigenvalue targets used: min 0.258798, max 2.84678 eigenvalues provided (min 0.0683816, max 2.58798) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3414 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3414 nodes, limit used is 5 [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh | 1 10.581018 10.581018 Build dofmap data | 2 0.006416 0.012832 Build sparsity | 1 0.011399 0.011399 Compute connectivity 2-3 | 1 0.001426 0.001426 Compute dof reordering map | 2 0.000356 0.000712 Compute entities of dim = 2 | 1 0.099688 0.099688 Compute graph partition (SCOTCH) | 1 10.375435 10.375435 Compute local part of mesh dual graph | 2 0.069003 0.138007 Compute local-to-local map | 1 0.000565 0.000565 Compute non-local part of mesh dual graph | 1 0.054754 0.054754 Compute-local-to-global links for global/local adjacency list | 1 0.001036 0.001036 Distribute AdjacencyList nodes to destination ranks | 1 0.006939 0.006939 Distribute row-wise data (scalable) | 1 0.002330 0.002330 Extract partition boundaries from SCOTCH graph | 1 0.001075 0.001075 GPS: create_level_structure | 5 0.000752 0.004513 Get SCOTCH graph data | 1 0.000015 0.000015 Gibbs-Poole-Stockmeyer ordering | 1 0.009555 0.009555 Init MPI | 1 0.174836 0.174836 Init PETSc | 1 0.004347 0.004347 Init dofmap from element dofmap | 2 0.003456 0.006911 Init logging | 1 0.000071 0.000071 PETSc Krylov solver | 1 1.305917 1.305917 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000303 0.000303 SCOTCH: call SCOTCH_dgraphHalo | 1 0.036442 0.036442 SCOTCH: call SCOTCH_dgraphPart | 1 10.370280 10.370280 SparsityPattern::assemble | 1 0.015109 0.015109 Topology: create | 1 0.024283 0.024283 Topology: determine shared index ownership | 1 0.001762 0.001762 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.004275 0.004275 ZZZ Assemble matrix | 1 0.302216 0.302216 ZZZ Assemble vector | 1 0.015798 0.015798 ZZZ Create Mesh | 1 10.581974 10.581974 ZZZ Create RHS function | 1 0.024522 0.024522 ZZZ Create boundary conditions | 1 0.002858 0.002858 ZZZ Create facets and facet->cell connectivity | 1 0.101084 0.101084 ZZZ Create forms | 1 0.000108 0.000108 ZZZ Create near-nullspace | 1 0.014960 0.014960 ZZZ FunctionSpace | 1 0.008922 0.008922 ZZZ Solve | 1 1.316348 1.316348 *** Number of Krylov iterations: 21 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf/dolfinx-scaling-test on a named virt64c with 3 processors, by pbuilder1 Mon May 15 13:41:12 2023 Using Petsc Release Version 3.18.5, Feb 27, 2023 Max Max/Min Avg Total Time (sec): 1.240e+01 1.000 1.240e+01 Objects: 4.630e+02 1.004 4.617e+02 Flops: 2.153e+08 1.080 2.071e+08 6.214e+08 Flops/sec: 1.736e+07 1.080 1.671e+07 5.012e+07 MPI Msg Count: 8.170e+02 1.044 7.947e+02 2.384e+03 MPI Msg Len (bytes): 6.444e+06 1.406 6.964e+03 1.660e+07 MPI Reductions: 6.360e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.2399e+01 100.0% 6.2145e+08 100.0% 2.384e+03 100.0% 6.964e+03 100.0% 6.180e+02 97.2% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 103 1.0 9.3472e-02 10.7 0.00e+00 0.0 1.4e+02 4.0e+00 1.0e+02 0 0 6 0 16 0 0 6 0 17 0 BuildTwoSidedF 86 1.0 9.2749e-02 12.3 0.00e+00 0.0 1.1e+02 3.8e+04 8.6e+01 0 0 5 25 14 0 0 5 25 14 0 MatMult 217 1.0 3.0018e-01 1.0 1.22e+08 1.1 1.3e+03 5.3e+03 2.0e+00 2 56 56 42 0 2 56 56 42 0 1161 MatMultAdd 44 1.0 7.3101e-02 1.2 1.00e+07 1.1 1.8e+02 1.3e+03 0.0e+00 1 5 7 1 0 1 5 7 1 0 399 MatMultTranspose 44 1.0 3.8032e-02 1.1 1.00e+07 1.1 1.9e+02 1.3e+03 2.0e+00 0 5 8 1 0 0 5 8 1 0 767 MatSolve 22 0.0 2.4946e-03 0.0 1.77e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 708 MatLUFactorSym 1 1.0 2.5631e-03 65.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 9.3624e-03 2147.3 5.11e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 545 MatConvert 1 1.0 9.8171e-04 1.4 0.00e+00 0.0 1.2e+01 6.8e+02 1.0e+00 0 0 1 0 0 0 0 1 0 0 0 MatScale 4 1.0 1.5973e-03 1.2 4.54e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 829 MatResidual 44 1.0 5.6744e-02 1.0 2.37e+07 1.1 2.6e+02 5.1e+03 0.0e+00 0 11 11 8 0 0 11 11 8 0 1185 MatAssemblyBegin 59 1.0 1.1653e-01 3.6 0.00e+00 0.0 1.1e+02 3.8e+04 3.0e+01 1 0 5 25 5 1 0 5 25 5 0 MatAssemblyEnd 59 1.0 9.2227e-02 1.0 9.09e+04 2.2 0.0e+00 0.0e+00 9.6e+01 1 0 0 0 15 1 0 0 0 16 2 MatGetRowIJ 1 0.0 1.0595e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 2 1.0 1.6014e-02 1.0 0.00e+00 0.0 1.0e+01 3.5e+04 2.8e+01 0 0 0 2 4 0 0 0 2 5 0 MatGetOrdering 1 0.0 2.6110e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 2.6138e-02 1.0 1.40e+05 1.1 2.3e+02 7.3e+02 9.6e+01 0 0 10 1 15 0 0 10 1 16 16 MatZeroEntries 3 1.0 2.1208e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 9.9578e-03 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 4 1.0 2.7020e-02 1.0 1.15e+05 1.1 0.0e+00 0.0e+00 1.2e+01 0 0 0 0 2 0 0 0 0 2 12 MatTranspose 10 1.0 1.5749e-02 1.1 0.00e+00 0.0 9.0e+01 2.1e+03 3.2e+01 0 0 4 1 5 0 0 4 1 5 0 MatMatMultSym 9 1.0 9.4770e-02 1.1 0.00e+00 0.0 5.1e+01 1.1e+04 2.8e+01 1 0 2 4 4 1 0 2 4 5 0 MatMatMultNum 3 1.0 3.0998e-02 1.0 6.46e+06 1.1 1.5e+01 2.4e+04 3.0e+00 0 3 1 2 0 0 3 1 2 0 592 MatPtAPSymbolic 3 1.0 2.3874e-01 1.0 0.00e+00 0.0 9.9e+01 3.4e+04 2.1e+01 2 0 4 20 3 2 0 4 20 3 0 MatPtAPNumeric 3 1.0 3.8238e-01 1.0 5.33e+07 1.1 3.0e+01 8.9e+04 1.5e+01 3 24 1 16 2 3 24 1 16 2 392 MatGetLocalMat 9 1.0 7.5062e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 9 1.0 1.0145e-02 1.0 0.00e+00 0.0 1.2e+02 3.0e+04 1.0e+00 0 0 5 22 0 0 0 5 22 0 0 VecMDot 20 1.0 4.1666e-03 1.3 1.19e+06 1.1 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 3 0 1 0 0 3 837 VecTDot 42 1.0 4.1341e-03 1.8 8.60e+05 1.1 0.0e+00 0.0e+00 4.2e+01 0 0 0 0 7 0 0 0 0 7 610 VecNorm 44 1.0 3.9654e-03 1.6 6.87e+05 1.1 0.0e+00 0.0e+00 4.4e+01 0 0 0 0 7 0 0 0 0 7 509 VecScale 22 1.0 1.6296e-04 1.0 1.19e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2140 VecCopy 136 1.0 1.1067e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 203 1.0 7.8643e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 44 1.0 1.6215e-03 1.2 8.82e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1593 VecAYPX 284 1.0 7.1533e-03 1.2 2.32e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 948 VecAXPBYCZ 88 1.0 5.0457e-03 1.6 2.39e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1382 VecMAXPY 22 1.0 1.9025e-03 1.1 1.41e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2166 VecAssemblyBegin 57 1.0 2.0307e-03 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 5.6e+01 0 0 0 0 9 0 0 0 0 9 0 VecAssemblyEnd 57 1.0 1.7503e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 198 1.0 4.8936e-03 1.0 1.07e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 641 VecScatterBegin 363 1.0 9.5596e-03 1.1 0.00e+00 0.0 1.9e+03 4.0e+03 8.0e+00 0 0 80 46 1 0 0 80 46 1 0 VecScatterEnd 363 1.0 6.9398e-02 2.4 1.23e+04 1.7 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecNormalize 22 1.0 1.4627e-03 1.7 3.58e+05 1.1 0.0e+00 0.0e+00 2.2e+01 0 0 0 0 3 0 0 0 0 4 715 SFSetGraph 35 1.0 3.5542e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 17 1.0 2.9767e-03 1.3 0.00e+00 0.0 1.6e+02 4.8e+02 1.7e+01 0 0 7 0 3 0 0 7 0 3 0 SFBcastBegin 14 1.0 1.9956e-04 1.1 0.00e+00 0.0 8.4e+01 6.4e+02 0.0e+00 0 0 4 0 0 0 0 4 0 0 0 SFBcastEnd 14 1.0 1.8566e-04 1.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 4 1.0 1.1933e-04 1.1 0.00e+00 0.0 1.8e+01 5.3e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 SFReduceEnd 4 1.0 5.4756e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFPack 381 1.0 2.7815e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 381 1.0 6.2282e-04 1.0 1.23e+04 1.7 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 47 KSPSetUp 7 1.0 6.7648e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 KSPSolve 1 1.0 4.1196e-01 1.0 1.39e+08 1.1 1.6e+03 4.4e+03 7.0e+01 3 65 65 41 11 3 65 65 41 11 986 KSPGMRESOrthog 20 1.0 5.9110e-03 1.2 2.39e+06 1.1 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 3 0 1 0 0 3 1180 PCSetUp_GAMG+ 1 1.0 8.7483e-01 1.0 7.41e+07 1.1 8.0e+02 1.1e+04 5.0e+02 7 34 33 52 79 7 34 33 52 81 239 PCGAMGCreateG 2 1.0 5.1081e-02 1.0 5.03e+04 1.1 6.0e+01 2.9e+03 4.4e+01 0 0 3 1 7 0 0 3 1 7 3 GAMG Coarsen 2 1.0 2.8146e-02 1.0 1.40e+05 1.1 2.3e+02 7.3e+02 9.6e+01 0 0 10 1 15 0 0 10 1 16 15 GAMG MIS/Agg 2 1.0 2.6190e-02 1.0 1.40e+05 1.1 2.3e+02 7.3e+02 9.6e+01 0 0 10 1 15 0 0 10 1 16 16 PCGAMGProl 2 1.0 3.3644e-02 1.0 0.00e+00 0.0 1.9e+02 1.9e+03 1.9e+02 0 0 8 2 30 0 0 8 2 30 0 GAMG Prol-col 2 1.0 1.4342e-02 1.0 0.00e+00 0.0 1.8e+02 7.0e+02 1.7e+02 0 0 8 1 27 0 0 8 1 28 0 GAMG Prol-lift 2 1.0 1.8614e-02 1.0 0.00e+00 0.0 1.2e+01 1.9e+04 1.0e+01 0 0 1 1 2 0 0 1 1 2 0 PCGAMGOptProl 2 1.0 1.3286e-01 1.0 2.07e+07 1.1 1.9e+02 8.3e+03 8.2e+01 1 10 8 10 13 1 10 8 10 13 445 GAMG smooth 2 1.0 9.1543e-02 1.0 6.97e+06 1.1 4.8e+01 2.0e+04 2.6e+01 1 3 2 6 4 1 3 2 6 4 217 PCGAMGCreateL 2 1.0 6.2683e-01 1.0 5.32e+07 1.1 1.2e+02 5.2e+04 7.7e+01 5 24 5 38 12 5 24 5 38 12 238 GAMG PtAP 2 1.0 6.0919e-01 1.0 5.32e+07 1.1 9.6e+01 6.2e+04 2.4e+01 5 24 4 36 4 5 24 4 36 4 245 GAMG Reduce 1 1.0 1.8754e-02 1.1 0.00e+00 0.0 2.5e+01 1.5e+04 5.3e+01 0 0 1 2 8 0 0 1 2 9 0 PCGAMG Gal l00 1 1.0 4.3578e-01 1.0 3.42e+07 1.0 4.8e+01 8.2e+04 1.2e+01 4 16 2 24 2 4 16 2 24 2 234 PCGAMG Opt l00 1 1.0 6.0861e-02 1.0 5.10e+06 1.1 2.4e+01 3.2e+04 1.0e+01 0 2 1 5 2 0 2 1 5 2 247 PCGAMG Gal l01 1 1.0 1.7340e-01 1.0 1.91e+07 1.6 4.8e+01 4.1e+04 1.2e+01 1 8 2 12 2 1 8 2 12 2 273 PCGAMG Opt l01 1 1.0 1.3331e-02 1.0 1.36e+06 1.5 2.4e+01 7.7e+03 1.0e+01 0 1 1 1 2 0 1 1 1 2 249 PCSetUp 2 1.0 8.8727e-01 1.0 7.41e+07 1.1 8.0e+02 1.1e+04 5.0e+02 7 34 33 52 79 7 34 33 52 81 242 PCSetUpOnBlocks 22 1.0 1.2498e-02 34.8 5.11e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 409 PCApply 22 1.0 3.5936e-01 1.0 1.19e+08 1.1 1.4e+03 4.1e+03 6.0e+00 3 56 60 35 1 3 56 60 35 1 965 --- Event Stage 1: Unknown ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 12 12 Matrix 106 106 Matrix Coarsen 2 2 Matrix Null Space 1 1 Index Set 75 75 IS L to G Mapping 6 6 Vector 187 187 Star Forest Graph 43 43 Krylov Solver 7 7 Preconditioner 7 7 Viewer 3 2 PetscRandom 2 2 Distributed Mesh 4 4 Discrete System 4 4 Weak Form 4 4 --- Event Stage 1: Unknown ======================================================================================================================== Average time to get PetscTime(): 1.4e-07 Average time for MPI_Barrier(): 4.0196e-06 Average time for zero size MPI_Send(): 3.03967e-06 #PETSc Option Table entries: --ndofs 10000 --problem_type elasticity --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 4 sizeof(void*) 4 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=arm-linux-gnueabihf --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -lhdf5 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --prefix=/usr/lib/petscdir/petsc3.18/arm-linux-gnueabihf-real --PETSC_ARCH=arm-linux-gnueabihf-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-CNoRhM/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-CNoRhM/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-CNoRhM/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-CNoRhM/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2023-03-05 14:16:00 on reproducible Machine characteristics: Linux-5.10.0-21-arm64-armv8l-with-glibc2.36 Using PETSc directory: /usr/lib/petscdir/petsc3.18/arm-linux-gnueabihf-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-CNoRhM/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-CNoRhM/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.18/arm-linux-gnueabihf-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.18/arm-linux-gnueabihf-real/lib -L/usr/lib/petscdir/petsc3.18/arm-linux-gnueabihf-real/lib -lpetsc_real -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -L/usr/lib/arm-linux-gnueabihf/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/arm-linux-gnueabihf -L/lib/arm-linux-gnueabihf -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lgfortran -lm -lz -lgfortran -lm -lgfortran -lgcc_s -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 --problem_type elasticity --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 4 unused database options. They are: Option left: name:--ndofs value: 10000 Option left: name:--problem_type value: elasticity Option left: name:--scaling_type value: weak Option left: name:-mg_levels_esteig_ksp_type value: cg 2023-05-15 13:41:12.698 ( 12.700s) [RANK: 0 ] loguru.cpp:526 INFO| atexit ==== elasticity strong scaling (3 processes with ndofs=30000) ==== 2023-05-15 13:41:12.984 ( 0.108s) [RANK: 0 ] utils.cpp:612 INFO| Compute partition of cells across ranks 2023-05-15 13:41:12.984 ( 0.108s) [RANK: 0 ] graphbuild.cpp:533 INFO| Building mesh dual graph 2023-05-15 13:41:12.984 ( 0.108s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2023-05-15 13:41:13.033 ( 0.157s) [RANK: 0 ] graphbuild.cpp:89 INFO| Build nonlocal part of mesh dual graph 2023-05-15 13:41:13.034 ( 0.158s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:13.034 ( 0.158s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:13.034 ( 0.158s) [RANK: 0 ] graphbuild.cpp:203 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 2023-05-15 13:41:13.039 ( 0.163s) [RANK: 0 ] graphbuild.cpp:545 INFO| Graph edges (local: 66332, non-local: 962) 2023-05-15 13:41:13.039 ( 0.163s) [RANK: 0 ] partitioners.cpp:316 INFO| Compute graph partition using PT-SCOTCH 2023-05-15 13:41:22.966 ( 10.090s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2023-05-15 13:41:22.991 ( 10.115s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2023-05-15 13:41:23.125 ( 10.249s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2023-05-15 13:41:23.212 ( 10.336s) [RANK: 0 ] ordering.cpp:202 INFO| GPS pseudo-diameter:(121) 15892-511 2023-05-15 13:41:23.222 ( 10.346s) [RANK: 0 ] Topology.cpp:923 INFO| Create topology 2023-05-15 13:41:23.226 ( 10.350s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2023-05-15 13:41:23.251 ( 10.375s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2023-05-15 13:41:23.290 ( 10.414s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:23.290 ( 10.415s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:23.291 ( 10.415s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:23.291 ( 10.415s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:23.298 ( 10.422s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:23.298 ( 10.422s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:23.299 ( 10.423s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-15 13:41:23.299 ( 10.423s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-15 13:41:23.323 ( 10.447s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:23.323 ( 10.448s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:23.332 ( 10.456s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-15 13:41:23.332 ( 10.456s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-15 13:41:23.332 ( 10.456s) [RANK: 0 ] MPI.h:368 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 2023-05-15 13:41:23.333 ( 10.457s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:23.333 ( 10.457s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:23.333 ( 10.457s) [RANK: 0 ] MPI.h:500 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 UnitCube (24x19x19) to be refined 0 times 2023-05-15 13:41:23.360 ( 10.484s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 2 2023-05-15 13:41:23.394 ( 10.518s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:23.395 ( 10.519s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:23.539 ( 10.663s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:23.539 ( 10.663s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:23.542 ( 10.666s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2023-05-15 13:41:23.542 ( 10.666s) [RANK: 0 ]topologycomputation.cpp:650 INFO| Computing mesh connectivity 2 - 3 from transpose. 2023-05-15 13:41:23.545 ( 10.669s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 0 2023-05-15 13:41:23.549 ( 10.673s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:23.559 ( 10.683s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:23.559 ( 10.684s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:23.560 ( 10.684s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:23.560 ( 10.684s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-15 13:41:23.560 ( 10.684s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-15 13:41:23.560 ( 10.684s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:23.560 ( 10.684s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:23.562 ( 10.686s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2023-05-15 13:41:23.563 ( 10.687s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2023-05-15 13:41:23.563 ( 10.687s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 0 2023-05-15 13:41:23.564 ( 10.688s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2023-05-15 13:41:23.641 ( 10.765s) [RANK: 0 ] SparsityPattern.cpp:389 INFO| Column ghost size increased from 214 to 561 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.5.2 dolfinx hash: debian_1:0.5.2-2+b1 ufl hash: da4f06cb7b24fd71359bedaeafbca801c698ea33 petsc version: Petsc Release Version 3.18.5, Feb 27, 2023 Problem type: elasticity Scaling type: strong Num processes: 3 Num cells: 51984 (52 thousand) Total degrees of freedom: 30000 (30 thousand) Average degrees of freedom per process: 10000 ---------------------------------------------------------------- 2023-05-15 13:41:24.274 ( 11.398s) [RANK: 0 ] petsc.cpp:677 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = -1. -1. -1. Threshold scaling factor for each level not specified = 1. AGG specific options Number of levels to square graph 1 Number smoothing steps 1 Complexity: grid = 1.0644 operator = 1.25169 Coarse grid solver -- level 0 ------------------------------- KSP Object: (mg_coarse_) 3 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 3 MPI processes type: bjacobi number of blocks = 3 Local solver information for first block is in the following KSP and PC objects on rank 0: Use -mg_coarse_ksp_view ::ascii_info_detail to display information for all blocks KSP Object: (mg_coarse_sub_) 1 MPI process type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI process type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.07148 Factored matrix follows: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=246, cols=246, bs=6 package used to perform factorization: petsc total: nonzeros=58284, allocated nonzeros=58284 using I-node routines: found 59 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: (mg_coarse_sub_) 1 MPI process type: seqaij rows=246, cols=246, bs=6 total: nonzeros=54396, allocated nonzeros=54396 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 73 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=246, cols=246, bs=6 total: nonzeros=54396, allocated nonzeros=54396 total number of mallocs used during MatSetValues calls=0 using I-node (on process 0) routines: found 73 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 3 MPI processes type: chebyshev eigenvalue targets used: min 0.250462, max 2.75509 eigenvalues provided (min 1.74513e-06, max 2.50462) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=1686, cols=1686, bs=6 total: nonzeros=260604, allocated nonzeros=260604 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 158 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 3 MPI processes type: chebyshev eigenvalue targets used: min 0.25856, max 2.84416 eigenvalues provided (min 0.0750929, max 2.5856) with transform: [0. 0.1; 0. 1.1] maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 3 MPI processes type: jacobi type DIAGONAL linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3370 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=30000, cols=30000, bs=3 total: nonzeros=1251522, allocated nonzeros=1251522 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3370 nodes, limit used is 5 [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh | 1 10.378391 10.378391 Build dofmap data | 2 0.022703 0.045405 Build sparsity | 1 0.022955 0.022955 Compute connectivity 2-3 | 1 0.001109 0.001109 Compute dof reordering map | 2 0.000376 0.000752 Compute entities of dim = 2 | 1 0.182362 0.182362 Compute graph partition (SCOTCH) | 1 9.910348 9.910348 Compute local part of mesh dual graph | 2 0.064983 0.129966 Compute local-to-local map | 1 0.004645 0.004645 Compute non-local part of mesh dual graph | 1 0.007240 0.007240 Compute-local-to-global links for global/local adjacency list | 1 0.000976 0.000976 Distribute AdjacencyList nodes to destination ranks | 1 0.182308 0.182308 Distribute row-wise data (scalable) | 1 0.001735 0.001735 Extract partition boundaries from SCOTCH graph | 1 0.001229 0.001229 GPS: create_level_structure | 2 0.002821 0.011284 Get SCOTCH graph data | 1 0.000021 0.000021 Gibbs-Poole-Stockmeyer ordering | 1 0.016073 0.016073 Init MPI | 1 0.095859 0.095859 Init PETSc | 1 0.008519 0.008519 Init dofmap from element dofmap | 2 0.004718 0.009436 Init logging | 1 0.000071 0.000071 PETSc Krylov solver | 1 2.979508 2.979508 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000321 0.000321 SCOTCH: call SCOTCH_dgraphHalo | 1 0.059910 0.059910 SCOTCH: call SCOTCH_dgraphPart | 1 9.870127 9.870127 SparsityPattern::assemble | 1 0.028076 0.028076 Topology: create | 1 0.142568 0.142568 Topology: determine shared index ownership | 1 0.091480 0.091480 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.007660 0.007660 ZZZ Assemble matrix | 1 0.539294 0.539294 ZZZ Assemble vector | 1 0.016013 0.016013 ZZZ Create Mesh | 1 10.378955 10.378955 ZZZ Create RHS function | 1 0.037099 0.037099 ZZZ Create boundary conditions | 1 0.014307 0.014307 ZZZ Create facets and facet->cell connectivity | 1 0.183592 0.183592 ZZZ Create forms | 1 0.000129 0.000129 ZZZ Create near-nullspace | 1 0.026588 0.026588 ZZZ FunctionSpace | 1 0.018394 0.018394 ZZZ Solve | 1 3.000090 3.000090 *** Number of Krylov iterations: 21 *** Solution norm: 3.6795e-05 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf/dolfinx-scaling-test on a named virt64c with 3 processors, by pbuilder1 Mon May 15 13:41:27 2023 Using Petsc Release Version 3.18.5, Feb 27, 2023 Max Max/Min Avg Total Time (sec): 1.428e+01 1.000 1.428e+01 Objects: 4.630e+02 1.004 4.617e+02 Flops: 2.177e+08 1.077 2.080e+08 6.241e+08 Flops/sec: 1.525e+07 1.077 1.456e+07 4.369e+07 MPI Msg Count: 8.200e+02 1.041 7.987e+02 2.396e+03 MPI Msg Len (bytes): 6.314e+06 1.387 6.894e+03 1.652e+07 MPI Reductions: 6.370e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.4282e+01 100.0% 6.2406e+08 100.0% 2.396e+03 100.0% 6.894e+03 100.0% 6.190e+02 97.2% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 103 1.0 3.9985e-01 2.0 0.00e+00 0.0 1.4e+02 4.0e+00 1.0e+02 2 0 6 0 16 2 0 6 0 17 0 BuildTwoSidedF 86 1.0 3.6660e-01 2.2 0.00e+00 0.0 1.2e+02 3.5e+04 8.6e+01 2 0 5 25 14 2 0 5 25 14 0 MatMult 217 1.0 8.6624e-01 1.1 1.21e+08 1.1 1.3e+03 5.4e+03 2.0e+00 6 55 55 43 0 6 55 55 43 0 399 MatMultAdd 44 1.0 1.6751e-01 1.3 1.02e+07 1.1 1.8e+02 1.4e+03 0.0e+00 1 5 7 1 0 1 5 7 1 0 174 MatMultTranspose 44 1.0 1.0524e-01 1.1 1.02e+07 1.1 1.9e+02 1.3e+03 2.0e+00 1 5 8 1 0 1 5 8 1 0 277 MatSolve 22 0.0 3.4467e-03 0.0 2.56e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 742 MatLUFactorSym 1 1.0 3.9829e-03 127.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 1.3976e-02 4063.8 8.67e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 620 MatConvert 1 1.0 3.4387e-02 1.5 0.00e+00 0.0 1.2e+01 7.1e+02 1.0e+00 0 0 1 0 0 0 0 1 0 0 0 MatScale 4 1.0 1.4577e-03 1.1 4.61e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 908 MatResidual 44 1.0 1.6782e-01 1.1 2.34e+07 1.1 2.6e+02 5.1e+03 0.0e+00 1 11 11 8 0 1 11 11 8 0 396 MatAssemblyBegin 59 1.0 4.3112e-01 2.0 0.00e+00 0.0 1.2e+02 3.5e+04 3.0e+01 2 0 5 25 5 2 0 5 25 5 0 MatAssemblyEnd 59 1.0 2.1949e-01 1.1 8.07e+04 1.6 0.0e+00 0.0e+00 9.6e+01 1 0 0 0 15 1 0 0 0 16 1 MatGetRowIJ 1 0.0 1.4657e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 2 1.0 2.7110e-02 1.0 0.00e+00 0.0 1.0e+01 4.4e+04 2.8e+01 0 0 0 3 4 0 0 0 3 5 0 MatGetOrdering 1 0.0 3.3205e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 1.9495e-01 1.0 1.38e+05 1.0 2.4e+02 7.2e+02 9.7e+01 1 0 10 1 15 1 0 10 1 16 2 MatZeroEntries 3 1.0 4.5762e-03 21.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 1.8845e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 4 1.0 9.2435e-02 1.1 1.14e+05 1.0 0.0e+00 0.0e+00 1.2e+01 1 0 0 0 2 1 0 0 0 2 4 MatTranspose 10 1.0 2.6795e-02 1.0 0.00e+00 0.0 9.0e+01 2.0e+03 3.2e+01 0 0 4 1 5 0 0 4 1 5 0 MatMatMultSym 9 1.0 1.6998e-01 1.4 0.00e+00 0.0 5.1e+01 1.1e+04 2.8e+01 1 0 2 4 4 1 0 2 4 5 0 MatMatMultNum 3 1.0 5.6207e-02 1.0 6.39e+06 1.1 1.5e+01 2.5e+04 3.0e+00 0 3 1 2 0 0 3 1 2 0 323 MatPtAPSymbolic 3 1.0 5.1443e-01 1.0 0.00e+00 0.0 9.9e+01 3.2e+04 2.1e+01 4 0 4 19 3 4 0 4 19 3 0 MatPtAPNumeric 3 1.0 6.1132e-01 1.0 5.69e+07 1.3 3.0e+01 8.4e+04 1.5e+01 4 24 1 15 2 4 24 1 15 2 248 MatGetLocalMat 9 1.0 5.6102e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 9 1.0 2.6462e-02 1.2 0.00e+00 0.0 1.2e+02 2.9e+04 1.0e+00 0 0 5 21 0 0 0 5 21 0 0 VecMDot 20 1.0 7.1269e-02 3.8 1.18e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 3 0 1 0 0 3 49 VecTDot 42 1.0 7.5054e-02 1.5 8.49e+05 1.0 0.0e+00 0.0e+00 4.2e+01 0 0 0 0 7 0 0 0 0 7 34 VecNorm 44 1.0 1.2638e-01 3.6 6.80e+05 1.0 0.0e+00 0.0e+00 4.4e+01 0 0 0 0 7 0 0 0 0 7 16 VecScale 22 1.0 2.1404e-04 1.3 1.18e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1628 VecCopy 136 1.0 1.2017e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 203 1.0 2.3094e-03 3.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 44 1.0 6.0182e-03 3.5 8.70e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 429 VecAYPX 284 1.0 1.4465e-02 2.4 2.30e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 468 VecAXPBYCZ 88 1.0 3.5598e-03 1.2 2.37e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1958 VecMAXPY 22 1.0 2.2159e-03 1.1 1.40e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1859 VecAssemblyBegin 57 1.0 9.8881e-03 5.5 0.00e+00 0.0 0.0e+00 0.0e+00 5.6e+01 0 0 0 0 9 0 0 0 0 9 0 VecAssemblyEnd 57 1.0 1.9049e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 198 1.0 5.2705e-03 1.2 1.06e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 595 VecScatterBegin 363 1.0 1.2860e-02 1.5 0.00e+00 0.0 1.9e+03 4.1e+03 8.0e+00 0 0 79 47 1 0 0 79 47 1 0 VecScatterEnd 363 1.0 6.9555e-01 1.2 1.43e+04 2.1 0.0e+00 0.0e+00 0.0e+00 4 0 0 0 0 4 0 0 0 0 0 VecNormalize 22 1.0 4.9217e-02 56.0 3.55e+05 1.0 0.0e+00 0.0e+00 2.2e+01 0 0 0 0 3 0 0 0 0 4 21 SFSetGraph 35 1.0 3.5590e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 17 1.0 5.0971e-02 1.3 0.00e+00 0.0 1.6e+02 4.8e+02 1.7e+01 0 0 7 0 3 0 0 7 0 3 0 SFBcastBegin 15 1.0 2.9154e-04 1.2 0.00e+00 0.0 9.0e+01 6.3e+02 0.0e+00 0 0 4 0 0 0 0 4 0 0 0 SFBcastEnd 15 1.0 4.2819e-02 1.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 4 1.0 1.2283e-04 1.1 0.00e+00 0.0 1.8e+01 5.4e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 0 SFReduceEnd 4 1.0 5.1115e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFPack 382 1.0 3.0137e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 382 1.0 7.5822e-04 1.1 1.43e+04 2.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 39 KSPSetUp 7 1.0 5.3617e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 KSPSolve 1 1.0 1.1231e+00 1.0 1.38e+08 1.1 1.6e+03 4.5e+03 7.0e+01 8 65 65 42 11 8 65 65 42 11 363 KSPGMRESOrthog 20 1.0 7.3392e-02 3.6 2.37e+06 1.0 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 3 0 1 0 0 3 95 PCSetUp_GAMG+ 1 1.0 1.8483e+00 1.0 7.75e+07 1.3 8.0e+02 1.0e+04 5.0e+02 13 34 33 51 79 13 34 33 51 81 114 PCGAMGCreateG 2 1.0 1.3524e-01 1.1 4.98e+04 1.0 6.0e+01 2.8e+03 4.4e+01 1 0 3 1 7 1 0 3 1 7 1 GAMG Coarsen 2 1.0 1.9704e-01 1.0 1.38e+05 1.0 2.4e+02 7.2e+02 9.7e+01 1 0 10 1 15 1 0 10 1 16 2 GAMG MIS/Agg 2 1.0 1.9500e-01 1.0 1.38e+05 1.0 2.4e+02 7.2e+02 9.7e+01 1 0 10 1 15 1 0 10 1 16 2 PCGAMGProl 2 1.0 5.4778e-02 1.0 0.00e+00 0.0 1.9e+02 1.7e+03 1.9e+02 0 0 8 2 30 0 0 8 2 30 0 GAMG Prol-col 2 1.0 2.2614e-02 1.0 0.00e+00 0.0 1.8e+02 6.3e+02 1.7e+02 0 0 8 1 27 0 0 8 1 27 0 GAMG Prol-lift 2 1.0 3.1533e-02 1.0 0.00e+00 0.0 1.2e+01 1.7e+04 1.0e+01 0 0 1 1 2 0 0 1 1 2 0 PCGAMGOptProl 2 1.0 3.3950e-01 1.0 2.05e+07 1.1 1.9e+02 8.3e+03 8.2e+01 2 9 8 10 13 2 9 8 10 13 173 GAMG smooth 2 1.0 1.5932e-01 1.0 6.91e+06 1.1 4.8e+01 2.0e+04 2.6e+01 1 3 2 6 4 1 3 2 6 4 123 PCGAMGCreateL 2 1.0 1.1275e+00 1.0 5.68e+07 1.3 1.2e+02 5.1e+04 7.7e+01 8 24 5 37 12 8 24 5 37 12 134 GAMG PtAP 2 1.0 1.0987e+00 1.0 5.68e+07 1.3 9.6e+01 5.9e+04 2.4e+01 8 24 4 34 4 8 24 4 34 4 138 GAMG Reduce 1 1.0 2.9588e-02 1.0 0.00e+00 0.0 2.5e+01 1.9e+04 5.3e+01 0 0 1 3 8 0 0 1 3 9 0 PCGAMG Gal l00 1 1.0 8.0729e-01 1.0 3.49e+07 1.1 4.8e+01 7.4e+04 1.2e+01 6 16 2 21 2 6 16 2 21 2 125 PCGAMG Opt l00 1 1.0 1.0628e-01 1.1 5.04e+06 1.0 2.4e+01 3.3e+04 1.0e+01 1 2 1 5 2 1 2 1 5 2 141 PCGAMG Gal l01 1 1.0 2.9138e-01 1.0 2.19e+07 1.9 4.8e+01 4.4e+04 1.2e+01 2 8 2 13 2 2 8 2 13 2 174 PCGAMG Opt l01 1 1.0 2.8385e-02 1.0 1.34e+06 1.8 2.4e+01 6.8e+03 1.0e+01 0 1 1 1 2 0 1 1 1 2 110 PCSetUp 2 1.0 1.8667e+00 1.0 7.75e+07 1.1 8.0e+02 1.0e+04 5.0e+02 13 35 33 51 79 13 35 33 51 81 117 PCSetUpOnBlocks 22 1.0 1.8603e-02 49.1 8.67e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 466 PCApply 22 1.0 9.1400e-01 1.1 1.19e+08 1.1 1.4e+03 4.1e+03 6.0e+00 6 56 59 36 1 6 56 59 36 1 381 --- Event Stage 1: Unknown ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Container 12 12 Matrix 106 106 Matrix Coarsen 2 2 Matrix Null Space 1 1 Index Set 75 75 IS L to G Mapping 6 6 Vector 187 187 Star Forest Graph 43 43 Krylov Solver 7 7 Preconditioner 7 7 Viewer 3 2 PetscRandom 2 2 Distributed Mesh 4 4 Discrete System 4 4 Weak Form 4 4 --- Event Stage 1: Unknown ======================================================================================================================== Average time to get PetscTime(): 1.22e-07 Average time for MPI_Barrier(): 3.3916e-06 Average time for zero size MPI_Send(): 3.113e-06 #PETSc Option Table entries: --ndofs 30000 --problem_type elasticity --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 4 sizeof(void*) 4 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=arm-linux-gnueabihf --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -lhdf5 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --prefix=/usr/lib/petscdir/petsc3.18/arm-linux-gnueabihf-real --PETSC_ARCH=arm-linux-gnueabihf-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-CNoRhM/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-CNoRhM/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-CNoRhM/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-CNoRhM/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2023-03-05 14:16:00 on reproducible Machine characteristics: Linux-5.10.0-21-arm64-armv8l-with-glibc2.36 Using PETSc directory: /usr/lib/petscdir/petsc3.18/arm-linux-gnueabihf-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-CNoRhM/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-CNoRhM/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.18/arm-linux-gnueabihf-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.18/arm-linux-gnueabihf-real/lib -L/usr/lib/petscdir/petsc3.18/arm-linux-gnueabihf-real/lib -lpetsc_real -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -L/usr/lib/arm-linux-gnueabihf/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/arm-linux-gnueabihf -L/lib/arm-linux-gnueabihf -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lgfortran -lm -lz -lgfortran -lm -lgfortran -lgcc_s -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 30000 --problem_type elasticity --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 4 unused database options. They are: Option left: name:--ndofs value: 30000 Option left: name:--problem_type value: elasticity Option left: name:--scaling_type value: strong Option left: name:-mg_levels_esteig_ksp_type value: cg 2023-05-15 13:41:27.353 ( 14.477s) [RANK: 0 ] loguru.cpp:526 INFO| atexit ==== poisson weak scaling (3 processes with ndofs=10000) ==== 2023-05-15 13:41:27.792 ( 0.220s) [RANK: 0 ] utils.cpp:612 INFO| Compute partition of cells across ranks 2023-05-15 13:41:27.793 ( 0.221s) [RANK: 0 ] graphbuild.cpp:533 INFO| Building mesh dual graph 2023-05-15 13:41:27.793 ( 0.221s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2023-05-15 13:41:27.994 ( 0.422s) [RANK: 0 ] graphbuild.cpp:89 INFO| Build nonlocal part of mesh dual graph 2023-05-15 13:41:28.013 ( 0.441s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:28.014 ( 0.442s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:28.014 ( 0.442s) [RANK: 0 ] graphbuild.cpp:203 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 2023-05-15 13:41:28.027 ( 0.455s) [RANK: 0 ] graphbuild.cpp:545 INFO| Graph edges (local: 210000, non-local: 1800) 2023-05-15 13:41:28.027 ( 0.455s) [RANK: 0 ] partitioners.cpp:316 INFO| Compute graph partition using PT-SCOTCH 2023-05-15 13:41:45.982 ( 18.410s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2023-05-15 13:41:45.982 ( 18.410s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2023-05-15 13:41:45.994 ( 18.422s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2023-05-15 13:41:46.168 ( 18.596s) [RANK: 0 ] ordering.cpp:202 INFO| GPS pseudo-diameter:(167) 1635-51451 2023-05-15 13:41:46.192 ( 18.620s) [RANK: 0 ] Topology.cpp:923 INFO| Create topology 2023-05-15 13:41:46.204 ( 18.632s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2023-05-15 13:41:46.204 ( 18.632s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2023-05-15 13:41:46.258 ( 18.686s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:46.260 ( 18.688s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:46.260 ( 18.688s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:46.261 ( 18.689s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:46.271 ( 18.699s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:46.271 ( 18.699s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:46.272 ( 18.699s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-15 13:41:46.272 ( 18.700s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-15 13:41:46.272 ( 18.700s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:46.272 ( 18.700s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:46.285 ( 18.713s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-15 13:41:46.285 ( 18.713s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-15 13:41:46.285 ( 18.713s) [RANK: 0 ] MPI.h:368 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 2023-05-15 13:41:46.286 ( 18.714s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:46.286 ( 18.714s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:46.286 ( 18.714s) [RANK: 0 ] MPI.h:500 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 2023-05-15 13:41:46.295 ( 18.723s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 2 UnitCube (30x30x30) to be refined 0 times 2023-05-15 13:41:46.354 ( 18.782s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:46.358 ( 18.786s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:46.505 ( 18.932s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:46.505 ( 18.933s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:46.512 ( 18.940s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2023-05-15 13:41:46.512 ( 18.940s) [RANK: 0 ]topologycomputation.cpp:650 INFO| Computing mesh connectivity 2 - 3 from transpose. 2023-05-15 13:41:46.517 ( 18.945s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 0 2023-05-15 13:41:46.527 ( 18.955s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:46.528 ( 18.956s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:46.528 ( 18.956s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:46.528 ( 18.956s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:46.528 ( 18.956s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-15 13:41:46.528 ( 18.956s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-15 13:41:46.529 ( 18.957s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:46.529 ( 18.957s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:46.532 ( 18.960s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2023-05-15 13:41:46.534 ( 18.962s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2023-05-15 13:41:46.535 ( 18.962s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 0 2023-05-15 13:41:46.536 ( 18.964s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2023-05-15 13:41:46.619 ( 19.047s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2023-05-15 13:41:46.619 ( 19.047s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 2 2023-05-15 13:41:46.619 ( 19.047s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:46.620 ( 19.048s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:46.683 ( 19.111s) [RANK: 0 ] SparsityPattern.cpp:389 INFO| Column ghost size increased from 469 to 1274 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.5.2 dolfinx hash: debian_1:0.5.2-2+b1 ufl hash: da4f06cb7b24fd71359bedaeafbca801c698ea33 petsc version: Petsc Release Version 3.18.5, Feb 27, 2023 Problem type: poisson Scaling type: weak Num processes: 3 Num cells: 162000 (162 thousand) Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- 2023-05-15 13:41:46.859 ( 19.287s) [RANK: 0 ] petsc.cpp:677 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical SpGEMM type cusparse linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=29791, cols=29791 total: nonzeros=424171, allocated nonzeros=424171 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh | 1 18.534523 18.534523 Build dofmap data | 2 0.013436 0.026872 Build sparsity | 1 0.023999 0.023999 Compute connectivity 2-3 | 1 0.004748 0.004748 Compute dof reordering map | 2 0.001238 0.002477 Compute entities of dim = 2 | 1 0.217239 0.217239 Compute graph partition (SCOTCH) | 1 17.942604 17.942604 Compute local part of mesh dual graph | 2 0.193003 0.386006 Compute local-to-local map | 1 0.002315 0.002315 Compute non-local part of mesh dual graph | 1 0.079041 0.079041 Compute-local-to-global links for global/local adjacency list | 1 0.003275 0.003275 Distribute AdjacencyList nodes to destination ranks | 1 0.023941 0.023941 Distribute row-wise data (scalable) | 1 0.003205 0.003205 Extract partition boundaries from SCOTCH graph | 1 0.003051 0.003051 GPS: create_level_structure | 3 0.003873 0.009744 Get SCOTCH graph data | 1 0.000015 0.000015 Gibbs-Poole-Stockmeyer ordering | 1 0.027943 0.027943 Init MPI | 1 0.151486 0.151486 Init PETSc | 1 0.072099 0.072099 Init dofmap from element dofmap | 2 0.008741 0.017481 Init logging | 1 0.000070 0.000070 PETSc Krylov solver | 1 0.817945 0.817945 SCOTCH: call SCOTCH_dgraphBuild | 1 0.004330 0.004330 SCOTCH: call SCOTCH_dgraphHalo | 1 0.065735 0.065735 SCOTCH: call SCOTCH_dgraphPart | 1 17.925561 17.925561 SparsityPattern::assemble | 1 0.043044 0.043044 Topology: create | 1 0.072891 0.072891 Topology: determine shared index ownership | 1 0.005157 0.005157 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.011662 0.011662 ZZZ Assemble | 1 0.323147 0.323147 ZZZ Assemble matrix | 1 0.136474 0.136474 ZZZ Assemble vector | 1 0.026269 0.026269 ZZZ Create Mesh | 1 18.534732 18.534732 ZZZ Create RHS function | 1 0.082233 0.082233 ZZZ Create boundary conditions | 1 0.006505 0.006505 ZZZ Create facets and facet->cell connectivity | 1 0.222114 0.222114 ZZZ FunctionSpace | 1 0.014662 0.014662 ZZZ Solve | 1 0.822405 0.822405 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf/dolfinx-scaling-test on a named virt64c with 3 processors, by pbuilder1 Mon May 15 13:41:47 2023 Using Petsc Release Version 3.18.5, Feb 27, 2023 Max Max/Min Avg Total Time (sec): 1.992e+01 1.001 1.991e+01 Objects: 3.200e+01 1.000 3.200e+01 Flops: 3.508e+06 1.029 3.448e+06 1.035e+07 Flops/sec: 1.762e+05 1.029 1.732e+05 5.195e+05 MPI Msg Count: 2.800e+01 1.000 2.800e+01 8.400e+01 MPI Msg Len (bytes): 1.965e+05 1.222 6.572e+03 5.521e+05 MPI Reductions: 6.700e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.9914e+01 100.0% 1.0345e+07 100.0% 8.400e+01 100.0% 6.572e+03 100.0% 4.900e+01 73.1% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 4 1.0 7.8692e-03 5.2 0.00e+00 0.0 1.8e+01 4.0e+00 4.0e+00 0 0 21 0 6 0 0 21 0 8 0 BuildTwoSidedF 2 1.0 7.8343e-03 57.8 0.00e+00 0.0 1.2e+01 2.3e+04 2.0e+00 0 0 14 49 3 0 0 14 49 4 0 MatMult 7 1.0 8.6405e-03 1.0 1.94e+06 1.0 5.4e+01 4.8e+03 1.0e+00 0 55 64 47 1 0 55 64 47 2 663 MatConvert 1 1.0 4.2298e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 MatAssemblyBegin 3 1.0 1.1104e-02 2.7 0.00e+00 0.0 1.2e+01 2.3e+04 2.0e+00 0 0 14 49 3 0 0 14 49 4 0 MatAssemblyEnd 3 1.0 8.1029e-03 1.1 3.89e+03 1.3 0.0e+00 0.0e+00 6.0e+00 0 0 0 0 9 0 0 0 0 12 1 MatGetRowIJ 2 1.0 3.2600e-06 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 9.1796e-03 4.5 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 VecTDot 14 1.0 7.2477e-04 1.2 2.82e+05 1.0 0.0e+00 0.0e+00 1.4e+01 0 8 0 0 21 0 8 0 0 29 1151 VecNorm 8 1.0 3.8888e-03 10.2 1.61e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 12 0 5 0 0 16 123 VecCopy 2 1.0 5.0435e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 9 1.0 1.5057e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 14 1.0 4.5050e-04 1.1 2.82e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 1852 VecAYPX 6 1.0 2.3726e-04 1.3 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 1507 VecScatterBegin 8 1.0 2.1072e-03 2.2 0.00e+00 0.0 7.2e+01 3.9e+03 2.0e+00 0 0 86 51 3 0 0 86 51 4 0 VecScatterEnd 8 1.0 1.0624e-03 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 3 1.0 9.6531e-05 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 2 1.0 1.6852e-03 4.4 0.00e+00 0.0 2.4e+01 1.0e+03 2.0e+00 0 0 29 4 3 0 0 29 4 4 0 SFPack 8 1.0 1.9744e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 8 1.0 1.7378e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSetUp 1 1.0 1.5646e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 4.0275e-01 1.0 2.79e+06 1.0 5.4e+01 4.8e+03 2.3e+01 2 80 64 47 34 2 80 64 47 47 20 PCSetUp 1 1.0 4.0425e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 2 0 0 0 3 2 0 0 0 4 0 PCApply 8 1.0 3.9206e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 2 0 0 0 0 2 0 0 0 0 0 --- Event Stage 1: Unknown ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Matrix 4 4 Index Set 6 6 IS L to G Mapping 3 3 Vector 12 12 Star Forest Graph 3 3 Krylov Solver 1 1 Preconditioner 1 1 Viewer 2 1 --- Event Stage 1: Unknown ======================================================================================================================== Average time to get PetscTime(): 1.379e-07 Average time for MPI_Barrier(): 3.4838e-06 Average time for zero size MPI_Send(): 5.47933e-06 #PETSc Option Table entries: --ndofs 10000 --problem_type poisson --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 4 sizeof(void*) 4 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=arm-linux-gnueabihf --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -lhdf5 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --prefix=/usr/lib/petscdir/petsc3.18/arm-linux-gnueabihf-real --PETSC_ARCH=arm-linux-gnueabihf-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-CNoRhM/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-CNoRhM/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-CNoRhM/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-CNoRhM/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2023-03-05 14:16:00 on reproducible Machine characteristics: Linux-5.10.0-21-arm64-armv8l-with-glibc2.36 Using PETSc directory: /usr/lib/petscdir/petsc3.18/arm-linux-gnueabihf-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-CNoRhM/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-CNoRhM/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.18/arm-linux-gnueabihf-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.18/arm-linux-gnueabihf-real/lib -L/usr/lib/petscdir/petsc3.18/arm-linux-gnueabihf-real/lib -lpetsc_real -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -L/usr/lib/arm-linux-gnueabihf/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/arm-linux-gnueabihf -L/lib/arm-linux-gnueabihf -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lgfortran -lm -lz -lgfortran -lm -lgfortran -lgcc_s -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 --problem_type poisson --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 10000 Option left: name:--problem_type value: poisson Option left: name:--scaling_type value: weak 2023-05-15 13:41:47.750 ( 20.178s) [RANK: 0 ] loguru.cpp:526 INFO| atexit ==== poisson strong scaling (3 processes with ndofs=30000) ==== 2023-05-15 13:41:48.059 ( 0.138s) [RANK: 0 ] utils.cpp:612 INFO| Compute partition of cells across ranks 2023-05-15 13:41:48.060 ( 0.138s) [RANK: 0 ] graphbuild.cpp:533 INFO| Building mesh dual graph 2023-05-15 13:41:48.060 ( 0.138s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2023-05-15 13:41:48.231 ( 0.310s) [RANK: 0 ] graphbuild.cpp:89 INFO| Build nonlocal part of mesh dual graph 2023-05-15 13:41:48.232 ( 0.310s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:41:48.232 ( 0.311s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:41:48.233 ( 0.311s) [RANK: 0 ] graphbuild.cpp:203 INFO| Number of destination and source ranks in non-local dual graph construction, and ratio to total number of ranks: 2, 2, 0.666667, 0.666667 2023-05-15 13:41:48.241 ( 0.319s) [RANK: 0 ] graphbuild.cpp:545 INFO| Graph edges (local: 210000, non-local: 1800) 2023-05-15 13:41:48.241 ( 0.319s) [RANK: 0 ] partitioners.cpp:316 INFO| Compute graph partition using PT-SCOTCH 2023-05-15 13:42:05.277 ( 17.355s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2023-05-15 13:42:05.277 ( 17.355s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2023-05-15 13:42:05.289 ( 17.368s) [RANK: 0 ] graphbuild.cpp:396 INFO| Build local part of mesh dual graph 2023-05-15 13:42:05.456 ( 17.534s) [RANK: 0 ] ordering.cpp:202 INFO| GPS pseudo-diameter:(167) 51493-1755 2023-05-15 13:42:05.482 ( 17.560s) [RANK: 0 ] Topology.cpp:923 INFO| Create topology 2023-05-15 13:42:05.513 ( 17.591s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 3 2023-05-15 13:42:05.513 ( 17.591s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 3 2023-05-15 13:42:05.569 ( 17.647s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:42:05.573 ( 17.651s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:42:05.573 ( 17.651s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:42:05.573 ( 17.651s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:42:05.583 ( 17.661s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:42:05.584 ( 17.663s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:42:05.585 ( 17.663s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-15 13:42:05.585 ( 17.663s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-15 13:42:05.586 ( 17.664s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:42:05.586 ( 17.664s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:42:05.599 ( 17.677s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-15 13:42:05.599 ( 17.677s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-15 13:42:05.599 ( 17.677s) [RANK: 0 ] MPI.h:368 INFO| Number of neighbourhood source ranks in distribute_to_postoffice: 0 2023-05-15 13:42:05.600 ( 17.679s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:42:05.601 ( 17.679s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:42:05.601 ( 17.679s) [RANK: 0 ] MPI.h:500 INFO| Neighbourhood destination ranks from post office in distribute_data (rank, num dests, num dests/mpi_size): 0, 2, 0.666667 UnitCube (30x30x30) to be refined 0 times 2023-05-15 13:42:05.610 ( 17.688s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 2 2023-05-15 13:42:05.671 ( 17.749s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:42:05.672 ( 17.751s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:42:05.820 ( 17.898s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:42:05.820 ( 17.898s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:42:05.828 ( 17.906s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2023-05-15 13:42:05.828 ( 17.906s) [RANK: 0 ]topologycomputation.cpp:650 INFO| Computing mesh connectivity 2 - 3 from transpose. 2023-05-15 13:42:05.833 ( 17.911s) [RANK: 0 ]topologycomputation.cpp:746 INFO| Computing mesh entities of dimension 0 2023-05-15 13:42:05.846 ( 17.924s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:42:05.846 ( 17.924s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:42:05.846 ( 17.924s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:42:05.846 ( 17.924s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:42:05.847 ( 17.925s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 0 2023-05-15 13:42:05.847 ( 17.925s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 0 2023-05-15 13:42:05.847 ( 17.926s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:42:05.848 ( 17.926s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:42:05.850 ( 17.928s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2023-05-15 13:42:05.853 ( 17.931s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 0 2023-05-15 13:42:05.853 ( 17.931s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 0 2023-05-15 13:42:05.854 ( 17.932s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2023-05-15 13:42:05.948 ( 18.027s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 2 - 3 2023-05-15 13:42:05.949 ( 18.027s) [RANK: 0 ]topologycomputation.cpp:786 INFO| Requesting connectivity 3 - 2 2023-05-15 13:42:05.949 ( 18.027s) [RANK: 0 ] MPI.cpp:154 INFO| Computing communicaton graph edges (using NBX algorithm). Number of input edges: 2 2023-05-15 13:42:05.949 ( 18.028s) [RANK: 0 ] MPI.cpp:217 INFO| Finished graph edge discovery using NBX algorithm. Number of discovered edges 2 2023-05-15 13:42:06.015 ( 18.094s) [RANK: 0 ] SparsityPattern.cpp:389 INFO| Column ghost size increased from 464 to 1256 ---------------------------------------------------------------- Test problem summary dolfinx version: 0.5.2 dolfinx hash: debian_1:0.5.2-2+b1 ufl hash: da4f06cb7b24fd71359bedaeafbca801c698ea33 petsc version: Petsc Release Version 3.18.5, Feb 27, 2023 Problem type: poisson Scaling type: strong Num processes: 3 Num cells: 162000 (162 thousand) Total degrees of freedom: 29791 (29.8 thousand) Average degrees of freedom per process: 9930 ---------------------------------------------------------------- 2023-05-15 13:42:06.196 ( 18.274s) [RANK: 0 ] petsc.cpp:677 INFO| PETSc Krylov solver starting to solve system. KSP Object: 3 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 3 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical SpGEMM type cusparse linear system matrix = precond matrix: Mat Object: 3 MPI processes type: mpiaij rows=29791, cols=29791 total: nonzeros=424171, allocated nonzeros=424171 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_MAX] Summary of timings | reps wall avg wall tot --------------------------------------------------------------------------------------------------------- Build BoxMesh | 1 17.557787 17.557787 Build dofmap data | 2 0.015147 0.030295 Build sparsity | 1 0.026714 0.026714 Compute connectivity 2-3 | 1 0.004961 0.004961 Compute dof reordering map | 2 0.001344 0.002688 Compute entities of dim = 2 | 1 0.219207 0.219207 Compute graph partition (SCOTCH) | 1 17.025626 17.025626 Compute local part of mesh dual graph | 2 0.166949 0.333897 Compute local-to-local map | 1 0.002453 0.002453 Compute non-local part of mesh dual graph | 1 0.015614 0.015614 Compute-local-to-global links for global/local adjacency list | 1 0.003168 0.003168 Distribute AdjacencyList nodes to destination ranks | 1 0.023581 0.023581 Distribute row-wise data (scalable) | 1 0.004457 0.004457 Extract partition boundaries from SCOTCH graph | 1 0.003284 0.003284 GPS: create_level_structure | 2 0.003624 0.014498 Get SCOTCH graph data | 1 0.000013 0.000013 Gibbs-Poole-Stockmeyer ordering | 1 0.035050 0.035050 Init MPI | 1 0.125719 0.125719 Init PETSc | 1 0.007221 0.007221 Init dofmap from element dofmap | 2 0.009488 0.018977 Init logging | 1 0.000071 0.000071 PETSc Krylov solver | 1 0.820146 0.820146 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000595 0.000595 SCOTCH: call SCOTCH_dgraphHalo | 1 0.073866 0.073866 SCOTCH: call SCOTCH_dgraphPart | 1 17.011886 17.011886 SparsityPattern::assemble | 1 0.041694 0.041694 Topology: create | 1 0.091402 0.091402 Topology: determine shared index ownership | 1 0.020791 0.020791 Topology: determine vertex ownership groups (owned, undetermined, unowned) | 1 0.011544 0.011544 ZZZ Assemble | 1 0.341343 0.341343 ZZZ Assemble matrix | 1 0.138731 0.138731 ZZZ Assemble vector | 1 0.027932 0.027932 ZZZ Create Mesh | 1 17.558176 17.558176 ZZZ Create RHS function | 1 0.091795 0.091795 ZZZ Create boundary conditions | 1 0.006870 0.006870 ZZZ Create facets and facet->cell connectivity | 1 0.224320 0.224320 ZZZ FunctionSpace | 1 0.016880 0.016880 ZZZ Solve | 1 0.825175 0.825175 *** Number of Krylov iterations: 7 *** Solution norm: 36.6791 **************************************************************************************************************************************************************** *** WIDEN YOUR WINDOW TO 160 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** **************************************************************************************************************************************************************** ------------------------------------------------------------------ PETSc Performance Summary: ------------------------------------------------------------------ /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf/dolfinx-scaling-test on a named virt64c with 3 processors, by pbuilder1 Mon May 15 13:42:07 2023 Using Petsc Release Version 3.18.5, Feb 27, 2023 Max Max/Min Avg Total Time (sec): 1.897e+01 1.000 1.897e+01 Objects: 3.200e+01 1.000 3.200e+01 Flops: 3.490e+06 1.024 3.449e+06 1.035e+07 Flops/sec: 1.840e+05 1.024 1.818e+05 5.455e+05 MPI Msg Count: 2.800e+01 1.000 2.800e+01 8.400e+01 MPI Msg Len (bytes): 1.888e+05 1.199 6.345e+03 5.330e+05 MPI Reductions: 6.700e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flops and VecAXPY() for complex vectors of length N --> 8N flops Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.8969e+01 100.0% 1.0348e+07 100.0% 8.400e+01 100.0% 6.345e+03 100.0% 4.900e+01 73.1% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 4 1.0 1.0484e-02 9.6 0.00e+00 0.0 1.8e+01 4.0e+00 4.0e+00 0 0 21 0 6 0 0 21 0 8 0 BuildTwoSidedF 2 1.0 9.7877e-03 9.1 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 14 49 3 0 0 14 49 4 0 MatMult 7 1.0 8.4143e-03 1.0 1.93e+06 1.0 5.4e+01 4.7e+03 1.0e+00 0 55 64 47 1 0 55 64 47 2 681 MatConvert 1 1.0 4.4323e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 3 0 0 0 0 4 0 MatAssemblyBegin 3 1.0 1.3356e-02 2.8 0.00e+00 0.0 1.2e+01 2.2e+04 2.0e+00 0 0 14 49 3 0 0 14 49 4 0 MatAssemblyEnd 3 1.0 8.1487e-03 1.1 3.82e+03 1.3 0.0e+00 0.0e+00 6.0e+00 0 0 0 0 9 0 0 0 0 12 1 MatGetRowIJ 2 1.0 3.7600e-06 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 1.3297e-03 8.5 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 VecTDot 14 1.0 9.1927e-04 1.3 2.81e+05 1.0 0.0e+00 0.0e+00 1.4e+01 0 8 0 0 21 0 8 0 0 29 907 VecNorm 8 1.0 1.3386e-03 3.3 1.60e+05 1.0 0.0e+00 0.0e+00 8.0e+00 0 5 0 0 12 0 5 0 0 16 356 VecCopy 2 1.0 5.4275e-05 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 9 1.0 1.9690e-04 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 14 1.0 5.8809e-04 1.2 2.81e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 1418 VecAYPX 6 1.0 2.5224e-04 1.3 1.20e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 1417 VecScatterBegin 8 1.0 1.3514e-03 2.1 0.00e+00 0.0 7.2e+01 3.8e+03 2.0e+00 0 0 86 51 3 0 0 86 51 4 0 VecScatterEnd 8 1.0 1.0153e-03 2.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 3 1.0 8.3592e-05 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 2 1.0 1.0090e-03 3.1 0.00e+00 0.0 2.4e+01 9.6e+02 2.0e+00 0 0 29 4 3 0 0 29 4 4 0 SFPack 8 1.0 1.1407e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 8 1.0 2.1178e-05 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSetUp 1 1.0 1.3029e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 4.0281e-01 1.0 2.78e+06 1.0 5.4e+01 4.7e+03 2.3e+01 2 80 64 47 34 2 80 64 47 47 20 PCSetUp 1 1.0 4.1561e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+00 2 0 0 0 3 2 0 0 0 4 0 PCApply 8 1.0 3.9212e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 2 0 0 0 0 2 0 0 0 0 0 --- Event Stage 1: Unknown ------------------------------------------------------------------------------------------------------------------------ Object Type Creations Destructions. Reports information only for process 0. --- Event Stage 0: Main Stage Matrix 4 4 Index Set 6 6 IS L to G Mapping 3 3 Vector 12 12 Star Forest Graph 3 3 Krylov Solver 1 1 Preconditioner 1 1 Viewer 2 1 --- Event Stage 1: Unknown ======================================================================================================================== Average time to get PetscTime(): 1.4e-07 Average time for MPI_Barrier(): 4.9554e-06 Average time for zero size MPI_Send(): 6.886e-06 #PETSc Option Table entries: --ndofs 30000 --problem_type poisson --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 4 sizeof(void*) 4 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=arm-linux-gnueabihf --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-yaml=1 --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -lhdf5 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -lmpi " --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lspqr -lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --prefix=/usr/lib/petscdir/petsc3.18/arm-linux-gnueabihf-real --PETSC_ARCH=arm-linux-gnueabihf-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-CNoRhM/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-CNoRhM/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-CNoRhM/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-CNoRhM/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2023-03-05 14:16:00 on reproducible Machine characteristics: Linux-5.10.0-21-arm64-armv8l-with-glibc2.36 Using PETSc directory: /usr/lib/petscdir/petsc3.18/arm-linux-gnueabihf-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-CNoRhM/petsc-3.18.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-CNoRhM/petsc-3.18.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.18/arm-linux-gnueabihf-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.18/arm-linux-gnueabihf-real/lib -L/usr/lib/petscdir/petsc3.18/arm-linux-gnueabihf-real/lib -lpetsc_real -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -L/usr/lib/arm-linux-gnueabihf/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/arm-linux-gnueabihf -L/lib/arm-linux-gnueabihf -lHYPRE -lspqr -lumfpack -lamd -lcholmod -lklu -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lyaml -lX11 -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lgfortran -lm -lz -lgfortran -lm -lgfortran -lgcc_s -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 30000 --problem_type poisson --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 30000 Option left: name:--problem_type value: poisson Option left: name:--scaling_type value: strong 2023-05-15 13:42:07.098 ( 19.176s) [RANK: 0 ] loguru.cpp:526 INFO| atexit make[1]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake -O--sourcedirectory=src dh_prep -O--buildsystem=cmake -O--sourcedirectory=src dh_auto_install -O--buildsystem=cmake -O--sourcedirectory=src cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/fenicsx-performance-tests-0.5.0\~git20220731.821823b/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf' /usr/bin/cmake -S"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/src" -B"/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf" --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/fenicsx-performance-tests-0.5.0~git20220731.821823b/debian/tmp/usr/bin/dolfinx-scaling-test make[1]: Leaving directory '/build/fenicsx-performance-tests-0.5.0~git20220731.821823b/obj-arm-linux-gnueabihf' dh_install -O--buildsystem=cmake -O--sourcedirectory=src dh_installdocs -O--buildsystem=cmake -O--sourcedirectory=src dh_installchangelogs -O--buildsystem=cmake -O--sourcedirectory=src dh_installman -O--buildsystem=cmake -O--sourcedirectory=src dh_installsystemduser -O--buildsystem=cmake -O--sourcedirectory=src dh_perl -O--buildsystem=cmake -O--sourcedirectory=src dh_link -O--buildsystem=cmake -O--sourcedirectory=src dh_strip_nondeterminism -O--buildsystem=cmake -O--sourcedirectory=src dh_compress -O--buildsystem=cmake -O--sourcedirectory=src dh_fixperms -O--buildsystem=cmake -O--sourcedirectory=src dh_missing -O--buildsystem=cmake -O--sourcedirectory=src dh_dwz -a -O--buildsystem=cmake -O--sourcedirectory=src dh_strip -a -O--buildsystem=cmake -O--sourcedirectory=src dh_makeshlibs -a -O--buildsystem=cmake -O--sourcedirectory=src dh_shlibdeps -a -O--buildsystem=cmake -O--sourcedirectory=src dpkg-shlibdeps: warning: debian/fenicsx-performance-tests/usr/bin/dolfinx-scaling-test contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -O--buildsystem=cmake -O--sourcedirectory=src dh_gencontrol -O--buildsystem=cmake -O--sourcedirectory=src dh_md5sums -O--buildsystem=cmake -O--sourcedirectory=src dh_builddeb -O--buildsystem=cmake -O--sourcedirectory=src dpkg-deb: building package 'fenicsx-performance-tests-dbgsym' in '../fenicsx-performance-tests-dbgsym_0.5.0~git20220731.821823b-1_armhf.deb'. dpkg-deb: building package 'fenicsx-performance-tests' in '../fenicsx-performance-tests_0.5.0~git20220731.821823b-1_armhf.deb'. dpkg-deb: building package 'fenicsx-performance-tests-source' in '../fenicsx-performance-tests-source_0.5.0~git20220731.821823b-1_all.deb'. dpkg-genbuildinfo --build=binary -O../fenicsx-performance-tests_0.5.0~git20220731.821823b-1_armhf.buildinfo dpkg-genchanges --build=binary -O../fenicsx-performance-tests_0.5.0~git20220731.821823b-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1361 and its subdirectories I: Current time: Mon May 15 13:42:33 -12 2023 I: pbuilder-time-stamp: 1684201353