I: pbuilder: network access will be disabled during build
I: Current time: Thu May 11 06:26:48 +14 2023
I: pbuilder-time-stamp: 1683736008
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [idba_1.1.3-8.dsc]
I: copying [./idba_1.1.3.orig.tar.gz]
I: copying [./idba_1.1.3-8.debian.tar.xz]
I: Extracting source
gpgv: Signature made Sun Nov  6 10:30:52 2022 +14
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./idba_1.1.3-8.dsc: no acceptable signature found
dpkg-source: info: extracting idba in idba-1.1.3
dpkg-source: info: unpacking idba_1.1.3.orig.tar.gz
dpkg-source: info: unpacking idba_1.1.3-8.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying install_all_idba_flavours.patch
dpkg-source: info: applying use-atomic-for-mips.patch
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying 2to3.patch
dpkg-source: info: applying use_debian_packaged_googletest.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/9095/tmp/hooks/D01_modify_environment starting
debug: Running on virt32c.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 May 11 06:27 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/9095/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/9095/tmp/hooks/D02_print_environment starting
I: set
  BASH=/bin/sh
  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
  BASH_ALIASES=()
  BASH_ARGC=()
  BASH_ARGV=()
  BASH_CMDS=()
  BASH_LINENO=([0]="12" [1]="0")
  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
  BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf")
  BASH_VERSION='5.2.15(1)-release'
  BUILDDIR=/build
  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
  BUILDUSERNAME=pbuilder2
  BUILD_ARCH=armhf
  DEBIAN_FRONTEND=noninteractive
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4'
  DIRSTACK=()
  DISTRIBUTION=bookworm
  EUID=0
  FUNCNAME=([0]="Echo" [1]="main")
  GROUPS=()
  HOME=/root
  HOSTNAME=i-capture-the-hostname
  HOSTTYPE=arm
  HOST_ARCH=armhf
  IFS=' 	
  '
  INVOCATION_ID=93f14b3506f043f0801c55f9e242c5d2
  LANG=C
  LANGUAGE=it_CH:it
  LC_ALL=C
  MACHTYPE=arm-unknown-linux-gnueabihf
  MAIL=/var/mail/root
  OPTERR=1
  OPTIND=1
  OSTYPE=linux-gnueabihf
  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
  PBCURRENTCOMMANDLINEOPERATION=build
  PBUILDER_OPERATION=build
  PBUILDER_PKGDATADIR=/usr/share/pbuilder
  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
  PBUILDER_SYSCONFDIR=/etc
  PIPESTATUS=([0]="0")
  POSIXLY_CORRECT=y
  PPID=9095
  PS4='+ '
  PWD=/
  SHELL=/bin/bash
  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
  SHLVL=3
  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.0R9XMMbj/pbuilderrc_SDdL --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.0R9XMMbj/b2 --logfile b2/build.log --extrapackages usrmerge idba_1.1.3-8.dsc'
  SUDO_GID=113
  SUDO_UID=107
  SUDO_USER=jenkins
  TERM=unknown
  TZ=/usr/share/zoneinfo/Etc/GMT-14
  UID=0
  USER=root
  _='I: set'
  http_proxy=http://10.0.0.15:3142/
I: uname -a
  Linux i-capture-the-hostname 5.10.0-22-armmp-lpae #1 SMP Debian 5.10.178-3 (2023-04-22) armv7l GNU/Linux
I: ls -l /bin
  total 5072
  -rwxr-xr-x 1 root root 838488 Apr 24 11:24 bash
  -rwxr-xr-x 3 root root  67144 Sep 19  2022 bunzip2
  -rwxr-xr-x 3 root root  67144 Sep 19  2022 bzcat
  lrwxrwxrwx 1 root root      6 Sep 19  2022 bzcmp -> bzdiff
  -rwxr-xr-x 1 root root   2225 Sep 19  2022 bzdiff
  lrwxrwxrwx 1 root root      6 Sep 19  2022 bzegrep -> bzgrep
  -rwxr-xr-x 1 root root   4893 Nov 28  2021 bzexe
  lrwxrwxrwx 1 root root      6 Sep 19  2022 bzfgrep -> bzgrep
  -rwxr-xr-x 1 root root   3775 Sep 19  2022 bzgrep
  -rwxr-xr-x 3 root root  67144 Sep 19  2022 bzip2
  -rwxr-xr-x 1 root root  67112 Sep 19  2022 bzip2recover
  lrwxrwxrwx 1 root root      6 Sep 19  2022 bzless -> bzmore
  -rwxr-xr-x 1 root root   1297 Sep 19  2022 bzmore
  -rwxr-xr-x 1 root root  67632 Sep 21  2022 cat
  -rwxr-xr-x 1 root root  67676 Sep 21  2022 chgrp
  -rwxr-xr-x 1 root root  67644 Sep 21  2022 chmod
  -rwxr-xr-x 1 root root  67684 Sep 21  2022 chown
  -rwxr-xr-x 1 root root 133532 Sep 21  2022 cp
  -rwxr-xr-x 1 root root 132868 Jan  6 03:20 dash
  -rwxr-xr-x 1 root root 133220 Sep 21  2022 date
  -rwxr-xr-x 1 root root  67732 Sep 21  2022 dd
  -rwxr-xr-x 1 root root  68104 Sep 21  2022 df
  -rwxr-xr-x 1 root root 133632 Sep 21  2022 dir
  -rwxr-xr-x 1 root root  59128 Mar 23 23:02 dmesg
  lrwxrwxrwx 1 root root      8 Dec 20 03:33 dnsdomainname -> hostname
  lrwxrwxrwx 1 root root      8 Dec 20 03:33 domainname -> hostname
  -rwxr-xr-x 1 root root  67560 Sep 21  2022 echo
  -rwxr-xr-x 1 root root     41 Jan 25 04:43 egrep
  -rwxr-xr-x 1 root root  67548 Sep 21  2022 false
  -rwxr-xr-x 1 root root     41 Jan 25 04:43 fgrep
  -rwxr-xr-x 1 root root  55748 Mar 23 23:02 findmnt
  -rwsr-xr-x 1 root root  26208 Mar 23 22:15 fusermount
  -rwxr-xr-x 1 root root 128608 Jan 25 04:43 grep
  -rwxr-xr-x 2 root root   2346 Apr 10  2022 gunzip
  -rwxr-xr-x 1 root root   6447 Apr 10  2022 gzexe
  -rwxr-xr-x 1 root root  64220 Apr 10  2022 gzip
  -rwxr-xr-x 1 root root  67032 Dec 20 03:33 hostname
  -rwxr-xr-x 1 root root  67720 Sep 21  2022 ln
  -rwxr-xr-x 1 root root  35132 Mar 23 23:51 login
  -rwxr-xr-x 1 root root 133632 Sep 21  2022 ls
  -rwxr-xr-x 1 root root 136808 Mar 23 23:02 lsblk
  -rwxr-xr-x 1 root root  67800 Sep 21  2022 mkdir
  -rwxr-xr-x 1 root root  67764 Sep 21  2022 mknod
  -rwxr-xr-x 1 root root  67596 Sep 21  2022 mktemp
  -rwxr-xr-x 1 root root  38504 Mar 23 23:02 more
  -rwsr-xr-x 1 root root  38496 Mar 23 23:02 mount
  -rwxr-xr-x 1 root root   9824 Mar 23 23:02 mountpoint
  -rwxr-xr-x 1 root root 133532 Sep 21  2022 mv
  lrwxrwxrwx 1 root root      8 Dec 20 03:33 nisdomainname -> hostname
  lrwxrwxrwx 1 root root     14 Apr  3 20:25 pidof -> /sbin/killall5
  -rwxr-xr-x 1 root root  67608 Sep 21  2022 pwd
  lrwxrwxrwx 1 root root      4 Apr 24 11:24 rbash -> bash
  -rwxr-xr-x 1 root root  67600 Sep 21  2022 readlink
  -rwxr-xr-x 1 root root  67672 Sep 21  2022 rm
  -rwxr-xr-x 1 root root  67600 Sep 21  2022 rmdir
  -rwxr-xr-x 1 root root  67400 Nov  3  2022 run-parts
  -rwxr-xr-x 1 root root 133372 Jan  6 09:55 sed
  lrwxrwxrwx 1 root root      9 May 11 06:27 sh -> /bin/bash
  -rwxr-xr-x 1 root root  67584 Sep 21  2022 sleep
  -rwxr-xr-x 1 root root  67644 Sep 21  2022 stty
  -rwsr-xr-x 1 root root  50800 Mar 23 23:02 su
  -rwxr-xr-x 1 root root  67584 Sep 21  2022 sync
  -rwxr-xr-x 1 root root 336764 Apr  7 04:25 tar
  -rwxr-xr-x 1 root root  67144 Nov  3  2022 tempfile
  -rwxr-xr-x 1 root root 133224 Sep 21  2022 touch
  -rwxr-xr-x 1 root root  67548 Sep 21  2022 true
  -rwxr-xr-x 1 root root   9768 Mar 23 22:15 ulockmgr_server
  -rwsr-xr-x 1 root root  22108 Mar 23 23:02 umount
  -rwxr-xr-x 1 root root  67572 Sep 21  2022 uname
  -rwxr-xr-x 2 root root   2346 Apr 10  2022 uncompress
  -rwxr-xr-x 1 root root 133632 Sep 21  2022 vdir
  -rwxr-xr-x 1 root root  42608 Mar 23 23:02 wdctl
  lrwxrwxrwx 1 root root      8 Dec 20 03:33 ypdomainname -> hostname
  -rwxr-xr-x 1 root root   1984 Apr 10  2022 zcat
  -rwxr-xr-x 1 root root   1678 Apr 10  2022 zcmp
  -rwxr-xr-x 1 root root   6460 Apr 10  2022 zdiff
  -rwxr-xr-x 1 root root     29 Apr 10  2022 zegrep
  -rwxr-xr-x 1 root root     29 Apr 10  2022 zfgrep
  -rwxr-xr-x 1 root root   2081 Apr 10  2022 zforce
  -rwxr-xr-x 1 root root   8103 Apr 10  2022 zgrep
  -rwxr-xr-x 1 root root   2206 Apr 10  2022 zless
  -rwxr-xr-x 1 root root   1842 Apr 10  2022 zmore
  -rwxr-xr-x 1 root root   4577 Apr 10  2022 znew
I: user script /srv/workspace/pbuilder/9095/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), libgtest-dev, python3
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19329 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on libgtest-dev; however:
  Package libgtest-dev is not installed.
 pbuilder-satisfydepends-dummy depends on python3; however:
  Package python3 is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgtest-dev{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} 
The following packages are RECOMMENDED but will NOT be installed:
  ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 
0 packages upgraded, 43 newly installed, 0 to remove and 0 not upgraded.
Need to get 23.9 MB of archives. After unpacking 91.8 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main armhf libpython3.11-minimal armhf 3.11.2-6 [798 kB]
Get: 2 http://deb.debian.org/debian bookworm/main armhf libexpat1 armhf 2.5.0-1 [79.9 kB]
Get: 3 http://deb.debian.org/debian bookworm/main armhf python3.11-minimal armhf 3.11.2-6 [1714 kB]
Get: 4 http://deb.debian.org/debian bookworm/main armhf python3-minimal armhf 3.11.2-1+b1 [26.3 kB]
Get: 5 http://deb.debian.org/debian bookworm/main armhf media-types all 10.0.0 [26.1 kB]
Get: 6 http://deb.debian.org/debian bookworm/main armhf readline-common all 8.2-1.3 [69.0 kB]
Get: 7 http://deb.debian.org/debian bookworm/main armhf libreadline8 armhf 8.2-1.3 [144 kB]
Get: 8 http://deb.debian.org/debian bookworm/main armhf libpython3.11-stdlib armhf 3.11.2-6 [1678 kB]
Get: 9 http://deb.debian.org/debian bookworm/main armhf python3.11 armhf 3.11.2-6 [572 kB]
Get: 10 http://deb.debian.org/debian bookworm/main armhf libpython3-stdlib armhf 3.11.2-1+b1 [9296 B]
Get: 11 http://deb.debian.org/debian bookworm/main armhf python3 armhf 3.11.2-1+b1 [26.3 kB]
Get: 12 http://deb.debian.org/debian bookworm/main armhf sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 13 http://deb.debian.org/debian bookworm/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB]
Get: 14 http://deb.debian.org/debian bookworm/main armhf libmagic1 armhf 1:5.44-3 [96.5 kB]
Get: 15 http://deb.debian.org/debian bookworm/main armhf file armhf 1:5.44-3 [41.6 kB]
Get: 16 http://deb.debian.org/debian bookworm/main armhf gettext-base armhf 0.21-12 [157 kB]
Get: 17 http://deb.debian.org/debian bookworm/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get: 18 http://deb.debian.org/debian bookworm/main armhf groff-base armhf 1.22.4-10 [825 kB]
Get: 19 http://deb.debian.org/debian bookworm/main armhf bsdextrautils armhf 2.38.1-5+b1 [78.6 kB]
Get: 20 http://deb.debian.org/debian bookworm/main armhf libpipeline1 armhf 1.5.7-1 [33.6 kB]
Get: 21 http://deb.debian.org/debian bookworm/main armhf man-db armhf 2.11.2-2 [1351 kB]
Get: 22 http://deb.debian.org/debian bookworm/main armhf m4 armhf 1.4.19-3 [265 kB]
Get: 23 http://deb.debian.org/debian bookworm/main armhf autoconf all 2.71-3 [332 kB]
Get: 24 http://deb.debian.org/debian bookworm/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get: 25 http://deb.debian.org/debian bookworm/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get: 26 http://deb.debian.org/debian bookworm/main armhf autopoint all 0.21-12 [495 kB]
Get: 27 http://deb.debian.org/debian bookworm/main armhf libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 28 http://deb.debian.org/debian bookworm/main armhf libtool all 2.4.7-5 [517 kB]
Get: 29 http://deb.debian.org/debian bookworm/main armhf dh-autoreconf all 20 [17.1 kB]
Get: 30 http://deb.debian.org/debian bookworm/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get: 31 http://deb.debian.org/debian bookworm/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get: 32 http://deb.debian.org/debian bookworm/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 33 http://deb.debian.org/debian bookworm/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 34 http://deb.debian.org/debian bookworm/main armhf libelf1 armhf 0.188-2.1 [170 kB]
Get: 35 http://deb.debian.org/debian bookworm/main armhf dwz armhf 0.15-1 [101 kB]
Get: 36 http://deb.debian.org/debian bookworm/main armhf libicu72 armhf 72.1-3 [9048 kB]
Get: 37 http://deb.debian.org/debian bookworm/main armhf libxml2 armhf 2.9.14+dfsg-1.2 [591 kB]
Get: 38 http://deb.debian.org/debian bookworm/main armhf gettext armhf 0.21-12 [1229 kB]
Get: 39 http://deb.debian.org/debian bookworm/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 40 http://deb.debian.org/debian bookworm/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get: 41 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB]
Get: 42 http://deb.debian.org/debian bookworm/main armhf googletest all 1.12.1-0.2 [506 kB]
Get: 43 http://deb.debian.org/debian bookworm/main armhf libgtest-dev armhf 1.12.1-0.2 [232 kB]
Fetched 23.9 MB in 1s (32.7 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libpython3.11-minimal:armhf.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19329 files and directories currently installed.)
Preparing to unpack .../libpython3.11-minimal_3.11.2-6_armhf.deb ...
Unpacking libpython3.11-minimal:armhf (3.11.2-6) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../libexpat1_2.5.0-1_armhf.deb ...
Unpacking libexpat1:armhf (2.5.0-1) ...
Selecting previously unselected package python3.11-minimal.
Preparing to unpack .../python3.11-minimal_3.11.2-6_armhf.deb ...
Unpacking python3.11-minimal (3.11.2-6) ...
Setting up libpython3.11-minimal:armhf (3.11.2-6) ...
Setting up libexpat1:armhf (2.5.0-1) ...
Setting up python3.11-minimal (3.11.2-6) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19645 files and directories currently installed.)
Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_armhf.deb ...
Unpacking python3-minimal (3.11.2-1+b1) ...
Selecting previously unselected package media-types.
Preparing to unpack .../1-media-types_10.0.0_all.deb ...
Unpacking media-types (10.0.0) ...
Selecting previously unselected package readline-common.
Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ...
Unpacking readline-common (8.2-1.3) ...
Selecting previously unselected package libreadline8:armhf.
Preparing to unpack .../3-libreadline8_8.2-1.3_armhf.deb ...
Unpacking libreadline8:armhf (8.2-1.3) ...
Selecting previously unselected package libpython3.11-stdlib:armhf.
Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_armhf.deb ...
Unpacking libpython3.11-stdlib:armhf (3.11.2-6) ...
Selecting previously unselected package python3.11.
Preparing to unpack .../5-python3.11_3.11.2-6_armhf.deb ...
Unpacking python3.11 (3.11.2-6) ...
Selecting previously unselected package libpython3-stdlib:armhf.
Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_armhf.deb ...
Unpacking libpython3-stdlib:armhf (3.11.2-1+b1) ...
Setting up python3-minimal (3.11.2-1+b1) ...
Selecting previously unselected package python3.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 20079 files and directories currently installed.)
Preparing to unpack .../00-python3_3.11.2-1+b1_armhf.deb ...
Unpacking python3 (3.11.2-1+b1) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ...
Unpacking sensible-utils (0.0.17+nmu1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../02-libmagic-mgc_1%3a5.44-3_armhf.deb ...
Unpacking libmagic-mgc (1:5.44-3) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../03-libmagic1_1%3a5.44-3_armhf.deb ...
Unpacking libmagic1:armhf (1:5.44-3) ...
Selecting previously unselected package file.
Preparing to unpack .../04-file_1%3a5.44-3_armhf.deb ...
Unpacking file (1:5.44-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../05-gettext-base_0.21-12_armhf.deb ...
Unpacking gettext-base (0.21-12) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../06-libuchardet0_0.0.7-1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../07-groff-base_1.22.4-10_armhf.deb ...
Unpacking groff-base (1.22.4-10) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../08-bsdextrautils_2.38.1-5+b1_armhf.deb ...
Unpacking bsdextrautils (2.38.1-5+b1) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../09-libpipeline1_1.5.7-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.7-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../10-man-db_2.11.2-2_armhf.deb ...
Unpacking man-db (2.11.2-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../11-m4_1.4.19-3_armhf.deb ...
Unpacking m4 (1.4.19-3) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../12-autoconf_2.71-3_all.deb ...
Unpacking autoconf (2.71-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../15-autopoint_0.21-12_all.deb ...
Unpacking autopoint (0.21-12) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../16-libdebhelper-perl_13.11.4_all.deb ...
Unpacking libdebhelper-perl (13.11.4) ...
Selecting previously unselected package libtool.
Preparing to unpack .../17-libtool_2.4.7-5_all.deb ...
Unpacking libtool (2.4.7-5) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../18-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../20-libsub-override-perl_0.09-4_all.deb ...
Unpacking libsub-override-perl (0.09-4) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../22-dh-strip-nondeterminism_1.13.1-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.13.1-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../23-libelf1_0.188-2.1_armhf.deb ...
Unpacking libelf1:armhf (0.188-2.1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../24-dwz_0.15-1_armhf.deb ...
Unpacking dwz (0.15-1) ...
Selecting previously unselected package libicu72:armhf.
Preparing to unpack .../25-libicu72_72.1-3_armhf.deb ...
Unpacking libicu72:armhf (72.1-3) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../26-libxml2_2.9.14+dfsg-1.2_armhf.deb ...
Unpacking libxml2:armhf (2.9.14+dfsg-1.2) ...
Selecting previously unselected package gettext.
Preparing to unpack .../27-gettext_0.21-12_armhf.deb ...
Unpacking gettext (0.21-12) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../30-debhelper_13.11.4_all.deb ...
Unpacking debhelper (13.11.4) ...
Selecting previously unselected package googletest.
Preparing to unpack .../31-googletest_1.12.1-0.2_all.deb ...
Unpacking googletest (1.12.1-0.2) ...
Selecting previously unselected package libgtest-dev:armhf.
Preparing to unpack .../32-libgtest-dev_1.12.1-0.2_armhf.deb ...
Unpacking libgtest-dev:armhf (1.12.1-0.2) ...
Setting up media-types (10.0.0) ...
Setting up libpipeline1:armhf (1.5.7-1) ...
Setting up libicu72:armhf (72.1-3) ...
Setting up bsdextrautils (2.38.1-5+b1) ...
Setting up libmagic-mgc (1:5.44-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.11.4) ...
Setting up libmagic1:armhf (1:5.44-3) ...
Setting up gettext-base (0.21-12) ...
Setting up m4 (1.4.19-3) ...
Setting up file (1:5.44-3) ...
Setting up googletest (1.12.1-0.2) ...
Setting up autotools-dev (20220109.1) ...
Setting up autopoint (0.21-12) ...
Setting up autoconf (2.71-3) ...
Setting up sensible-utils (0.0.17+nmu1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libelf1:armhf (0.188-2.1) ...
Setting up readline-common (8.2-1.3) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.2) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up gettext (0.21-12) ...
Setting up libgtest-dev:armhf (1.12.1-0.2) ...
Setting up libtool (2.4.7-5) ...
Setting up libreadline8:armhf (8.2-1.3) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.22.4-10) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libpython3.11-stdlib:armhf (3.11.2-6) ...
Setting up man-db (2.11.2-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libpython3-stdlib:armhf (3.11.2-1+b1) ...
Setting up python3.11 (3.11.2-6) ...
Setting up debhelper (13.11.4) ...
Setting up python3 (3.11.2-1+b1) ...
Processing triggers for libc-bin (2.36-9) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
usrmerge is already the newest version (35).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: user script /srv/workspace/pbuilder/9095/tmp/hooks/A99_set_merged_usr starting
Re-configuring usrmerge...
removed '/etc/unsupported-skip-usrmerge-conversion'
The system has been successfully converted.
I: user script /srv/workspace/pbuilder/9095/tmp/hooks/A99_set_merged_usr finished
hostname: Name or service not known
I: Running cd /build/idba-1.1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../idba_1.1.3-8_source.changes
dpkg-buildpackage: info: source package idba
dpkg-buildpackage: info: source version 1.1.3-8
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean
   dh_clean
 debian/rules binary
dh binary
   dh_update_autotools_config
   dh_autoreconf
configure.ac:7: warning: The macro `AC_CONFIG_HEADER' is obsolete.
configure.ac:7: You should run autoupdate.
./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from...
configure.ac:7: the top level
configure.ac:8: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated.
./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from...
aclocal.m4:429: AM_INIT_AUTOMAKE is expanded from...
configure.ac:8: the top level
configure.ac:30: warning: AC_OUTPUT should be used without arguments.
configure.ac:30: You should run autoupdate.
configure.ac:8: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated.  For more info, see:
configure.ac:8: https://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation
bin/Makefile.am:4: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
bin/Makefile.am:9: warning: source file '$(top_srcdir)/src/tools/fa2fq.cpp' is in a subdirectory,
bin/Makefile.am:9: but option 'subdir-objects' is disabled
automake: warning: possible forward-incompatibility.
automake: At least one source file is in a subdirectory, but the 'subdir-objects'
automake: automake option hasn't been enabled.  For now, the corresponding output
automake: object file(s) will be placed in the top-level directory.  However, this
automake: behavior may change in a future Automake major version, with object
automake: files being placed in the same subdirectory as the corresponding sources.
automake: You are advised to start using 'subdir-objects' option throughout your
automake: project, to avoid future incompatibilities.
bin/Makefile.am:19: warning: source file '$(top_srcdir)/src/tools/filter_blat.cpp' is in a subdirectory,
bin/Makefile.am:19: but option 'subdir-objects' is disabled
bin/Makefile.am:17: warning: source file '$(top_srcdir)/src/tools/filter_contigs.cpp' is in a subdirectory,
bin/Makefile.am:17: but option 'subdir-objects' is disabled
bin/Makefile.am:33: warning: source file '$(top_srcdir)/src/release/filterfa.cpp' is in a subdirectory,
bin/Makefile.am:33: but option 'subdir-objects' is disabled
bin/Makefile.am:25: warning: source file '$(top_srcdir)/src/release/fq2fa.cpp' is in a subdirectory,
bin/Makefile.am:25: but option 'subdir-objects' is disabled
bin/Makefile.am:34: warning: source file '$(top_srcdir)/src/release/idba.cpp' is in a subdirectory,
bin/Makefile.am:34: but option 'subdir-objects' is disabled
bin/Makefile.am:30: warning: source file '$(top_srcdir)/src/release/idba_hybrid.cpp' is in a subdirectory,
bin/Makefile.am:30: but option 'subdir-objects' is disabled
bin/Makefile.am:29: warning: source file '$(top_srcdir)/src/release/idba_tran.cpp' is in a subdirectory,
bin/Makefile.am:29: but option 'subdir-objects' is disabled
bin/Makefile.am:13: warning: source file '$(top_srcdir)/src/tools/idba_tran_test.cpp' is in a subdirectory,
bin/Makefile.am:13: but option 'subdir-objects' is disabled
bin/Makefile.am:27: warning: source file '$(top_srcdir)/src/release/idba_ud.cpp' is in a subdirectory,
bin/Makefile.am:27: but option 'subdir-objects' is disabled
bin/Makefile.am:31: warning: source file '$(top_srcdir)/src/release/parallel_blat.cpp' is in a subdirectory,
bin/Makefile.am:31: but option 'subdir-objects' is disabled
bin/Makefile.am:18: warning: source file '$(top_srcdir)/src/tools/parallel_rna_blat.cpp' is in a subdirectory,
bin/Makefile.am:18: but option 'subdir-objects' is disabled
bin/Makefile.am:12: warning: source file '$(top_srcdir)/src/tools/print_graph.cpp' is in a subdirectory,
bin/Makefile.am:12: but option 'subdir-objects' is disabled
bin/Makefile.am:28: warning: source file '$(top_srcdir)/src/release/raw_n50.cpp' is in a subdirectory,
bin/Makefile.am:28: but option 'subdir-objects' is disabled
bin/Makefile.am:14: warning: source file '$(top_srcdir)/src/tools/sample_reads.cpp' is in a subdirectory,
bin/Makefile.am:14: but option 'subdir-objects' is disabled
bin/Makefile.am:7: warning: source file '$(top_srcdir)/src/tools/scaffold.cpp' is in a subdirectory,
bin/Makefile.am:7: but option 'subdir-objects' is disabled
bin/Makefile.am:6: warning: source file '$(top_srcdir)/src/tools/shuffle_reads.cpp' is in a subdirectory,
bin/Makefile.am:6: but option 'subdir-objects' is disabled
bin/Makefile.am:36: warning: source file '$(top_srcdir)/src/release/sim_reads.cpp' is in a subdirectory,
bin/Makefile.am:36: but option 'subdir-objects' is disabled
bin/Makefile.am:32: warning: source file '$(top_srcdir)/src/release/sim_reads_tran.cpp' is in a subdirectory,
bin/Makefile.am:32: but option 'subdir-objects' is disabled
bin/Makefile.am:15: warning: source file '$(top_srcdir)/src/tools/sort_psl.cpp' is in a subdirectory,
bin/Makefile.am:15: but option 'subdir-objects' is disabled
bin/Makefile.am:16: warning: source file '$(top_srcdir)/src/tools/sort_reads.cpp' is in a subdirectory,
bin/Makefile.am:16: but option 'subdir-objects' is disabled
bin/Makefile.am:20: warning: source file '$(top_srcdir)/src/tools/split_fa.cpp' is in a subdirectory,
bin/Makefile.am:20: but option 'subdir-objects' is disabled
bin/Makefile.am:23: warning: source file '$(top_srcdir)/src/tools/split_fq.cpp' is in a subdirectory,
bin/Makefile.am:23: but option 'subdir-objects' is disabled
bin/Makefile.am:35: warning: source file '$(top_srcdir)/src/release/split_scaffold.cpp' is in a subdirectory,
bin/Makefile.am:35: but option 'subdir-objects' is disabled
bin/Makefile.am:21: warning: source file '$(top_srcdir)/src/tools/test.cpp' is in a subdirectory,
bin/Makefile.am:21: but option 'subdir-objects' is disabled
bin/Makefile.am:8: warning: source file '$(top_srcdir)/src/tools/validate_component.cpp' is in a subdirectory,
bin/Makefile.am:8: but option 'subdir-objects' is disabled
bin/Makefile.am:26: warning: source file '$(top_srcdir)/src/release/validate_contigs_blat.cpp' is in a subdirectory,
bin/Makefile.am:26: but option 'subdir-objects' is disabled
bin/Makefile.am:11: warning: source file '$(top_srcdir)/src/tools/validate_contigs_mummer.cpp' is in a subdirectory,
bin/Makefile.am:11: but option 'subdir-objects' is disabled
bin/Makefile.am:22: warning: source file '$(top_srcdir)/src/tools/validate_reads_blat.cpp' is in a subdirectory,
bin/Makefile.am:22: but option 'subdir-objects' is disabled
bin/Makefile.am:10: warning: source file '$(top_srcdir)/src/tools/validate_rna.cpp' is in a subdirectory,
bin/Makefile.am:10: but option 'subdir-objects' is disabled
lib/Makefile.am:3: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/basic/math.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/misc/hash_aligner.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/misc/options_description.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/misc/log.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/misc/utils.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/misc/blat_record.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/sequence/short_sequence.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/sequence/sequence_reader.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/sequence/sequence_writer.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/sequence/sequence_io.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/sequence/sequence.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/sequence/compact_sequence.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/graph/contig_graph_branch_group.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/graph/hash_graph.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/graph/scaffold_graph.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/graph/contig_graph.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/graph/hash_graph_branch_group.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/graph/contig_info.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/assembly/local_assembler.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:5: warning: source file '$(top_srcdir)/src/assembly/assembly_utility.cpp' is in a subdirectory,
lib/Makefile.am:5: but option 'subdir-objects' is disabled
lib/Makefile.am:68: warning: source file '$(top_srcdir)/gtest_src/gtest/gtest_main.cc' is in a subdirectory,
lib/Makefile.am:68: but option 'subdir-objects' is disabled
lib/Makefile.am:68: warning: source file '$(top_srcdir)/gtest_src/gtest/gtest-all.cc' is in a subdirectory,
lib/Makefile.am:68: but option 'subdir-objects' is disabled
test/Makefile.am:4: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
test/Makefile.am:11: warning: source file '$(top_srcdir)/gtest_src/gtest/gtest_main.cc' is in a subdirectory,
test/Makefile.am:11: but option 'subdir-objects' is disabled
test/Makefile.am:11: warning: source file '$(top_srcdir)/src/test/atomic_integer_unittest.cpp' is in a subdirectory,
test/Makefile.am:11: but option 'subdir-objects' is disabled
test/Makefile.am:8: warning: source file '$(top_srcdir)/gtest_src/gtest/gtest_main.cc' is in a subdirectory,
test/Makefile.am:8: but option 'subdir-objects' is disabled
test/Makefile.am:8: warning: source file '$(top_srcdir)/src/test/bit_edges_unittest.cpp' is in a subdirectory,
test/Makefile.am:8: but option 'subdir-objects' is disabled
test/Makefile.am:6: warning: source file '$(top_srcdir)/gtest_src/gtest/gtest_main.cc' is in a subdirectory,
test/Makefile.am:6: but option 'subdir-objects' is disabled
test/Makefile.am:6: warning: source file '$(top_srcdir)/src/test/compact_sequence_unittest.cpp' is in a subdirectory,
test/Makefile.am:6: but option 'subdir-objects' is disabled
test/Makefile.am:17: warning: source file '$(top_srcdir)/gtest_src/gtest/gtest_main.cc' is in a subdirectory,
test/Makefile.am:17: but option 'subdir-objects' is disabled
test/Makefile.am:17: warning: source file '$(top_srcdir)/src/test/hash_map_unittest.cpp' is in a subdirectory,
test/Makefile.am:17: but option 'subdir-objects' is disabled
test/Makefile.am:10: warning: source file '$(top_srcdir)/gtest_src/gtest/gtest_main.cc' is in a subdirectory,
test/Makefile.am:10: but option 'subdir-objects' is disabled
test/Makefile.am:10: warning: source file '$(top_srcdir)/src/test/hash_set_unittest.cpp' is in a subdirectory,
test/Makefile.am:10: but option 'subdir-objects' is disabled
test/Makefile.am:7: warning: source file '$(top_srcdir)/gtest_src/gtest/gtest_main.cc' is in a subdirectory,
test/Makefile.am:7: but option 'subdir-objects' is disabled
test/Makefile.am:7: warning: source file '$(top_srcdir)/src/test/hash_table_unittest.cpp' is in a subdirectory,
test/Makefile.am:7: but option 'subdir-objects' is disabled
test/Makefile.am:13: warning: source file '$(top_srcdir)/gtest_src/gtest/gtest_main.cc' is in a subdirectory,
test/Makefile.am:13: but option 'subdir-objects' is disabled
test/Makefile.am:13: warning: source file '$(top_srcdir)/src/test/histgram_unittest.cpp' is in a subdirectory,
test/Makefile.am:13: but option 'subdir-objects' is disabled
test/Makefile.am:9: warning: source file '$(top_srcdir)/gtest_src/gtest/gtest_main.cc' is in a subdirectory,
test/Makefile.am:9: but option 'subdir-objects' is disabled
test/Makefile.am:9: warning: source file '$(top_srcdir)/src/test/kmer_unittest.cpp' is in a subdirectory,
test/Makefile.am:9: but option 'subdir-objects' is disabled
test/Makefile.am:14: warning: source file '$(top_srcdir)/gtest_src/gtest/gtest_main.cc' is in a subdirectory,
test/Makefile.am:14: but option 'subdir-objects' is disabled
test/Makefile.am:14: warning: source file '$(top_srcdir)/src/test/managed_list_unittest.cpp' is in a subdirectory,
test/Makefile.am:14: but option 'subdir-objects' is disabled
test/Makefile.am:15: warning: source file '$(top_srcdir)/gtest_src/gtest/gtest_main.cc' is in a subdirectory,
test/Makefile.am:15: but option 'subdir-objects' is disabled
test/Makefile.am:15: warning: source file '$(top_srcdir)/src/test/sequence_unittest.cpp' is in a subdirectory,
test/Makefile.am:15: but option 'subdir-objects' is disabled
test/Makefile.am:16: warning: source file '$(top_srcdir)/gtest_src/gtest/gtest_main.cc' is in a subdirectory,
test/Makefile.am:16: but option 'subdir-objects' is disabled
test/Makefile.am:16: warning: source file '$(top_srcdir)/src/test/short_sequence_unittest.cpp' is in a subdirectory,
test/Makefile.am:16: but option 'subdir-objects' is disabled
test/Makefile.am:12: warning: source file '$(top_srcdir)/gtest_src/gtest/gtest_main.cc' is in a subdirectory,
test/Makefile.am:12: but option 'subdir-objects' is disabled
test/Makefile.am:12: warning: source file '$(top_srcdir)/src/test/vertex_status_unittest.cpp' is in a subdirectory,
test/Makefile.am:12: but option 'subdir-objects' is disabled
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/build/idba-1.1.3'
dh_auto_configure -- LDFLAGS="-Wl,-z,relro -Wl,-z,now -Wl,--as-needed" LIBS=" -latomic"
	./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,--as-needed" "LIBS= -latomic"
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking whether make supports the include directive... yes (GNU style)
checking dependency style of g++... none
checking for gcc... gcc
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking for ranlib... ranlib
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for _Bool... yes
checking for stdbool.h that conforms to C99... yes
checking for an ANSI C-conforming const... yes
checking for working memcmp... yes
checking for vprintf... yes
checking for sqrt... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating bin/Makefile
config.status: creating lib/Makefile
config.status: creating test/Makefile
config.status: creating script/Makefile
config.status: creating config.h
config.status: executing depfiles commands
make[1]: Leaving directory '/build/idba-1.1.3'
   dh_auto_build
	make -j4
make[1]: Entering directory '/build/idba-1.1.3'
make  all-recursive
make[2]: Entering directory '/build/idba-1.1.3'
Making all in lib
make[3]: Entering directory '/build/idba-1.1.3/lib'
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o math.o `test -f '../src/basic/math.cpp' || echo './'`../src/basic/math.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o hash_aligner.o `test -f '../src/misc/hash_aligner.cpp' || echo './'`../src/misc/hash_aligner.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o options_description.o `test -f '../src/misc/options_description.cpp' || echo './'`../src/misc/options_description.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o log.o `test -f '../src/misc/log.cpp' || echo './'`../src/misc/log.cpp
In file included from ../src/container/hash_map.h:14,
                 from ../src/misc/hash_aligner.h:14,
                 from ../src/misc/hash_aligner.cpp:9:
../src/basic/hash.h:18:26: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   18 | struct Hash: public std::unary_function<T, uint64_t>
      |                          ^~~~~~~~~~~~~~
In file included from /usr/include/c++/12/functional:49,
                 from ../src/basic/functional.h:13,
                 from ../src/container/hash_map.h:13:
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:25:34: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   25 | struct Hash<int8_t>: public std::unary_function<int8_t, uint64_t>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:32:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   32 | struct Hash<uint8_t>: public std::unary_function<uint8_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:39:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   39 | struct Hash<int16_t>: public std::unary_function<int16_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:46:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   46 | struct Hash<uint16_t>: public std::unary_function<uint16_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:53:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   53 | struct Hash<int32_t>: public std::unary_function<int32_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:60:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   60 | struct Hash<uint32_t>: public std::unary_function<uint32_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:67:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   67 | struct Hash<int64_t>: public std::unary_function<int64_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:74:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   74 | struct Hash<uint64_t>: public std::unary_function<uint64_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/misc/log.cpp: In destructor 'LogProcess::~LogProcess()':
../src/misc/log.cpp:78:13: warning: 'throw' will always call 'terminate' [-Wterminate]
   78 |             throw runtime_error("cannot kill log process");
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../src/misc/log.cpp:78:13: note: in C++11 destructors default to 'noexcept'
../src/misc/log.cpp: In static member function 'static void* LogThread::LogThreadFunc(void*)':
../src/misc/log.cpp:122:14: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result]
  122 |         write(log_thread.out_fd, line, len);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o utils.o `test -f '../src/misc/utils.cpp' || echo './'`../src/misc/utils.cpp
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
                 from /usr/include/c++/12/algorithm:61,
                 from ../src/basic/math.cpp:3:
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
 1802 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
 1908 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
 1922 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
                 from ../src/basic/math.h:13,
                 from ../src/basic/math.cpp:1:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]',
    inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from 'void GenerateNormalCDFTable(int, int, std::vector<double>&)' at ../src/basic/math.cpp:40:31:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
    inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
    inlined from 'void GenerateNormalCDFTable(int, int, std::vector<double>&)' at ../src/basic/math.cpp:41:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
    inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
    inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
    inlined from 'void GenerateNormalCDFTable(int, int, std::vector<double>&)' at ../src/basic/math.cpp:41:9:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
 1849 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
 1854 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o blat_record.o `test -f '../src/misc/blat_record.cpp' || echo './'`../src/misc/blat_record.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o short_sequence.o `test -f '../src/sequence/short_sequence.cpp' || echo './'`../src/sequence/short_sequence.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence_reader.o `test -f '../src/sequence/sequence_reader.cpp' || echo './'`../src/sequence/sequence_reader.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence_writer.o `test -f '../src/sequence/sequence_writer.cpp' || echo './'`../src/sequence/sequence_writer.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence_io.o `test -f '../src/sequence/sequence_io.cpp' || echo './'`../src/sequence/sequence_io.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence.o `test -f '../src/sequence/sequence.cpp' || echo './'`../src/sequence/sequence.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o compact_sequence.o `test -f '../src/sequence/compact_sequence.cpp' || echo './'`../src/sequence/compact_sequence.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o contig_graph_branch_group.o `test -f '../src/graph/contig_graph_branch_group.cpp' || echo './'`../src/graph/contig_graph_branch_group.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o hash_graph.o `test -f '../src/graph/hash_graph.cpp' || echo './'`../src/graph/hash_graph.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o scaffold_graph.o `test -f '../src/graph/scaffold_graph.cpp' || echo './'`../src/graph/scaffold_graph.cpp
In file included from ../src/container/hash_map.h:14,
                 from ../src/graph/contig_graph.h:19,
                 from ../src/graph/contig_graph_branch_group.h:15,
                 from ../src/graph/contig_graph_branch_group.cpp:9:
../src/basic/hash.h:18:26: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   18 | struct Hash: public std::unary_function<T, uint64_t>
      |                          ^~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/refwrap.h:39,
                 from /usr/include/c++/12/vector:66,
                 from ../src/graph/contig_graph_branch_group.h:13:
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:25:34: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   25 | struct Hash<int8_t>: public std::unary_function<int8_t, uint64_t>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:32:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   32 | struct Hash<uint8_t>: public std::unary_function<uint8_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:39:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   39 | struct Hash<int16_t>: public std::unary_function<int16_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:46:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   46 | struct Hash<uint16_t>: public std::unary_function<uint16_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:53:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   53 | struct Hash<int32_t>: public std::unary_function<int32_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:60:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   60 | struct Hash<uint32_t>: public std::unary_function<uint32_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:67:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   67 | struct Hash<int64_t>: public std::unary_function<int64_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:74:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   74 | struct Hash<uint64_t>: public std::unary_function<uint64_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from ../src/container/hash_table.h:23,
                 from ../src/graph/hash_graph.h:22,
                 from ../src/graph/hash_graph.cpp:9:
../src/basic/hash.h:18:26: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   18 | struct Hash: public std::unary_function<T, uint64_t>
      |                          ^~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/refwrap.h:39,
                 from /usr/include/c++/12/deque:65,
                 from ../src/graph/hash_graph.h:15:
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:25:34: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   25 | struct Hash<int8_t>: public std::unary_function<int8_t, uint64_t>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:32:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   32 | struct Hash<uint8_t>: public std::unary_function<uint8_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:39:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   39 | struct Hash<int16_t>: public std::unary_function<int16_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:46:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   46 | struct Hash<uint16_t>: public std::unary_function<uint16_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:53:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   53 | struct Hash<int32_t>: public std::unary_function<int32_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:60:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   60 | struct Hash<uint32_t>: public std::unary_function<uint32_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:67:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   67 | struct Hash<int64_t>: public std::unary_function<int64_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:74:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   74 | struct Hash<uint64_t>: public std::unary_function<uint64_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from ../src/container/hash_map.h:14,
                 from ../src/graph/contig_graph.h:19,
                 from ../src/graph/scaffold_graph.h:19,
                 from ../src/graph/scaffold_graph.cpp:9:
../src/basic/hash.h:18:26: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   18 | struct Hash: public std::unary_function<T, uint64_t>
      |                          ^~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
                 from /usr/include/c++/12/bits/locale_classes.h:40,
                 from /usr/include/c++/12/bits/ios_base.h:41,
                 from /usr/include/c++/12/ios:42,
                 from /usr/include/c++/12/ostream:38,
                 from /usr/include/c++/12/iostream:39,
                 from ../src/graph/scaffold_graph.h:14:
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:25:34: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   25 | struct Hash<int8_t>: public std::unary_function<int8_t, uint64_t>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:32:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   32 | struct Hash<uint8_t>: public std::unary_function<uint8_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:39:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   39 | struct Hash<int16_t>: public std::unary_function<int16_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:46:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   46 | struct Hash<uint16_t>: public std::unary_function<uint16_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:53:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   53 | struct Hash<int32_t>: public std::unary_function<int32_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:60:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   60 | struct Hash<uint32_t>: public std::unary_function<uint32_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:67:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   67 | struct Hash<int64_t>: public std::unary_function<int64_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:74:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   74 | struct Hash<uint64_t>: public std::unary_function<uint64_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o contig_graph.o `test -f '../src/graph/contig_graph.cpp' || echo './'`../src/graph/contig_graph.cpp
In file included from ../src/container/hash_map.h:14,
                 from ../src/graph/contig_graph.h:19,
                 from ../src/graph/contig_graph.cpp:9:
../src/basic/hash.h:18:26: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   18 | struct Hash: public std::unary_function<T, uint64_t>
      |                          ^~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/refwrap.h:39,
                 from /usr/include/c++/12/deque:65,
                 from ../src/graph/contig_graph.h:14:
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:25:34: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   25 | struct Hash<int8_t>: public std::unary_function<int8_t, uint64_t>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:32:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   32 | struct Hash<uint8_t>: public std::unary_function<uint8_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:39:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   39 | struct Hash<int16_t>: public std::unary_function<int16_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:46:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   46 | struct Hash<uint16_t>: public std::unary_function<uint16_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:53:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   53 | struct Hash<int32_t>: public std::unary_function<int32_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:60:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   60 | struct Hash<uint32_t>: public std::unary_function<uint32_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:67:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   67 | struct Hash<int64_t>: public std::unary_function<int64_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:74:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   74 | struct Hash<uint64_t>: public std::unary_function<uint64_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o hash_graph_branch_group.o `test -f '../src/graph/hash_graph_branch_group.cpp' || echo './'`../src/graph/hash_graph_branch_group.cpp
../src/graph/contig_graph.cpp: In member function 'void ContigGraph::TopSort(std::deque<ContigGraphVertexAdaptor>&, std::deque<ContigGraphVertexAdaptor>&)':
../src/graph/contig_graph.cpp:1391:30: warning: variable 'end' set but not used [-Wunused-but-set-variable]
 1391 |     ContigGraphVertexAdaptor end = GetEndVertexAdaptor(component);
      |                              ^~~
In file included from ../src/container/hash_table.h:23,
                 from ../src/graph/hash_graph.h:22,
                 from ../src/graph/hash_graph_branch_group.h:14,
                 from ../src/graph/hash_graph_branch_group.cpp:9:
../src/basic/hash.h:18:26: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   18 | struct Hash: public std::unary_function<T, uint64_t>
      |                          ^~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/refwrap.h:39,
                 from /usr/include/c++/12/deque:65,
                 from ../src/graph/hash_graph.h:15:
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:25:34: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   25 | struct Hash<int8_t>: public std::unary_function<int8_t, uint64_t>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:32:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   32 | struct Hash<uint8_t>: public std::unary_function<uint8_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:39:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   39 | struct Hash<int16_t>: public std::unary_function<int16_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:46:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   46 | struct Hash<uint16_t>: public std::unary_function<uint16_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:53:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   53 | struct Hash<int32_t>: public std::unary_function<int32_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:60:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   60 | struct Hash<uint32_t>: public std::unary_function<uint32_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:67:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   67 | struct Hash<int64_t>: public std::unary_function<int64_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:74:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   74 | struct Hash<uint64_t>: public std::unary_function<uint64_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o contig_info.o `test -f '../src/graph/contig_info.cpp' || echo './'`../src/graph/contig_info.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o local_assembler.o `test -f '../src/assembly/local_assembler.cpp' || echo './'`../src/assembly/local_assembler.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o assembly_utility.o `test -f '../src/assembly/assembly_utility.cpp' || echo './'`../src/assembly/assembly_utility.cpp
In file included from ../src/container/hash_table.h:23,
                 from ../src/graph/hash_graph.h:22,
                 from ../src/assembly/local_assembler.h:15,
                 from ../src/assembly/local_assembler.cpp:9:
../src/basic/hash.h:18:26: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   18 | struct Hash: public std::unary_function<T, uint64_t>
      |                          ^~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/refwrap.h:39,
                 from /usr/include/c++/12/deque:65,
                 from ../src/assembly/assembly_utility.h:17,
                 from ../src/assembly/local_assembler.h:13:
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:25:34: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   25 | struct Hash<int8_t>: public std::unary_function<int8_t, uint64_t>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:32:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   32 | struct Hash<uint8_t>: public std::unary_function<uint8_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:39:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   39 | struct Hash<int16_t>: public std::unary_function<int16_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:46:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   46 | struct Hash<uint16_t>: public std::unary_function<uint16_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:53:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   53 | struct Hash<int32_t>: public std::unary_function<int32_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:60:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   60 | struct Hash<uint32_t>: public std::unary_function<uint32_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:67:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   67 | struct Hash<int64_t>: public std::unary_function<int64_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:74:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   74 | struct Hash<uint64_t>: public std::unary_function<uint64_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/assembly/local_assembler.cpp: In static member function 'static void* LocalAssemblerWithReference::LocalAssembleThread(void*)':
../src/assembly/local_assembler.cpp:488:22: warning: variable 'flag' set but not used [-Wunused-but-set-variable]
  488 |                 bool flag = false;
      |                      ^~~~
../src/assembly/local_assembler.cpp:489:21: warning: variable 'aligned' set but not used [-Wunused-but-set-variable]
  489 |                 int aligned[2] = {0};
      |                     ^~~~~~~
In file included from ../src/container/hash_map.h:14,
                 from ../src/graph/contig_graph.h:19,
                 from ../src/assembly/assembly_utility.cpp:14:
../src/basic/hash.h:18:26: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   18 | struct Hash: public std::unary_function<T, uint64_t>
      |                          ^~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/refwrap.h:39,
                 from /usr/include/c++/12/deque:65,
                 from ../src/assembly/assembly_utility.h:17,
                 from ../src/assembly/assembly_utility.cpp:9:
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:25:34: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   25 | struct Hash<int8_t>: public std::unary_function<int8_t, uint64_t>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:32:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   32 | struct Hash<uint8_t>: public std::unary_function<uint8_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:39:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   39 | struct Hash<int16_t>: public std::unary_function<int16_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:46:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   46 | struct Hash<uint16_t>: public std::unary_function<uint16_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:53:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   53 | struct Hash<int32_t>: public std::unary_function<int32_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:60:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   60 | struct Hash<uint32_t>: public std::unary_function<uint32_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:67:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   67 | struct Hash<int64_t>: public std::unary_function<int64_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:74:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   74 | struct Hash<uint64_t>: public std::unary_function<uint64_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gtest_main.o `test -f '../gtest_src/gtest/gtest_main.cc' || echo './'`../gtest_src/gtest/gtest_main.cc
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gtest-all.o `test -f '../gtest_src/gtest/gtest-all.cc' || echo './'`../gtest_src/gtest/gtest-all.cc
In file included from ../gtest_src/gtest/gtest-all.cc:39:
../gtest_src/gtest/gtest.h: In static member function 'static const char* testing::internal::String::CloneCString(const char*)':
../gtest_src/gtest/gtest.h:2672:17: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
 2672 |   return strncpy(dest, src, n);
      |                 ^
../gtest_src/gtest/gtest-all.cc:2155:39: note: length computed here
 2155 |                     NULL : CloneString(c_str, strlen(c_str));
      |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
rm -f libassembly.a
ar cru libassembly.a math.o hash_aligner.o options_description.o log.o utils.o blat_record.o short_sequence.o sequence_reader.o sequence_writer.o sequence_io.o sequence.o compact_sequence.o contig_graph_branch_group.o hash_graph.o scaffold_graph.o contig_graph.o hash_graph_branch_group.o contig_info.o local_assembler.o assembly_utility.o 
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib libassembly.a
rm -f libgtest.a
ar cru libgtest.a gtest_main.o gtest-all.o 
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib libgtest.a
make[3]: Leaving directory '/build/idba-1.1.3/lib'
Making all in bin
make[3]: Entering directory '/build/idba-1.1.3/bin'
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o idba.o `test -f '../src/release/idba.cpp' || echo './'`../src/release/idba.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o idba_ud.o `test -f '../src/release/idba_ud.cpp' || echo './'`../src/release/idba_ud.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o idba_tran.o `test -f '../src/release/idba_tran.cpp' || echo './'`../src/release/idba_tran.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o idba_hybrid.o `test -f '../src/release/idba_hybrid.cpp' || echo './'`../src/release/idba_hybrid.cpp
In file included from ../src/container/hash_table.h:23,
                 from ../src/graph/hash_graph.h:22,
                 from ../src/assembly/local_assembler.h:15,
                 from ../src/release/idba_ud.cpp:21:
../src/basic/hash.h:18:26: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   18 | struct Hash: public std::unary_function<T, uint64_t>
      |                          ^~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/refwrap.h:39,
                 from /usr/include/c++/12/deque:65,
                 from ../src/release/idba_ud.cpp:11:
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:25:34: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   25 | struct Hash<int8_t>: public std::unary_function<int8_t, uint64_t>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:32:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   32 | struct Hash<uint8_t>: public std::unary_function<uint8_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:39:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   39 | struct Hash<int16_t>: public std::unary_function<int16_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:46:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   46 | struct Hash<uint16_t>: public std::unary_function<uint16_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:53:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   53 | struct Hash<int32_t>: public std::unary_function<int32_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:60:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   60 | struct Hash<uint32_t>: public std::unary_function<uint32_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:67:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   67 | struct Hash<int64_t>: public std::unary_function<int64_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:74:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   74 | struct Hash<uint64_t>: public std::unary_function<uint64_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from ../src/container/hash_map.h:14,
                 from ../src/graph/contig_graph.h:19,
                 from ../src/release/idba.cpp:23:
../src/basic/hash.h:18:26: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   18 | struct Hash: public std::unary_function<T, uint64_t>
      |                          ^~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/refwrap.h:39,
                 from /usr/include/c++/12/deque:65,
                 from ../src/release/idba.cpp:11:
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:25:34: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   25 | struct Hash<int8_t>: public std::unary_function<int8_t, uint64_t>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:32:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   32 | struct Hash<uint8_t>: public std::unary_function<uint8_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:39:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   39 | struct Hash<int16_t>: public std::unary_function<int16_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:46:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   46 | struct Hash<uint16_t>: public std::unary_function<uint16_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:53:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   53 | struct Hash<int32_t>: public std::unary_function<int32_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:60:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   60 | struct Hash<uint32_t>: public std::unary_function<uint32_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:67:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   67 | struct Hash<int64_t>: public std::unary_function<int64_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:74:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   74 | struct Hash<uint64_t>: public std::unary_function<uint64_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from ../src/container/hash_table.h:23,
                 from ../src/graph/hash_graph.h:22,
                 from ../src/assembly/local_assembler.h:15,
                 from ../src/release/idba_hybrid.cpp:21:
../src/basic/hash.h:18:26: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   18 | struct Hash: public std::unary_function<T, uint64_t>
      |                          ^~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/refwrap.h:39,
                 from /usr/include/c++/12/deque:65,
                 from ../src/release/idba_hybrid.cpp:11:
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:25:34: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   25 | struct Hash<int8_t>: public std::unary_function<int8_t, uint64_t>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:32:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   32 | struct Hash<uint8_t>: public std::unary_function<uint8_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:39:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   39 | struct Hash<int16_t>: public std::unary_function<int16_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:46:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   46 | struct Hash<uint16_t>: public std::unary_function<uint16_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:53:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   53 | struct Hash<int32_t>: public std::unary_function<int32_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:60:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   60 | struct Hash<uint32_t>: public std::unary_function<uint32_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:67:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   67 | struct Hash<int64_t>: public std::unary_function<int64_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:74:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   74 | struct Hash<uint64_t>: public std::unary_function<uint64_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from ../src/container/hash_table.h:23,
                 from ../src/graph/hash_graph.h:22,
                 from ../src/assembly/local_assembler.h:15,
                 from ../src/release/idba_tran.cpp:22:
../src/basic/hash.h:18:26: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   18 | struct Hash: public std::unary_function<T, uint64_t>
      |                          ^~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/refwrap.h:39,
                 from /usr/include/c++/12/deque:65,
                 from ../src/release/idba_tran.cpp:11:
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:25:34: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   25 | struct Hash<int8_t>: public std::unary_function<int8_t, uint64_t>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:32:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   32 | struct Hash<uint8_t>: public std::unary_function<uint8_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:39:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   39 | struct Hash<int16_t>: public std::unary_function<int16_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:46:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   46 | struct Hash<uint16_t>: public std::unary_function<uint16_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:53:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   53 | struct Hash<int32_t>: public std::unary_function<int32_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:60:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   60 | struct Hash<uint32_t>: public std::unary_function<uint32_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:67:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   67 | struct Hash<int64_t>: public std::unary_function<int64_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:74:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   74 | struct Hash<uint64_t>: public std::unary_function<uint64_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/release/idba_tran.cpp: In function 'void FindIsoforms(ContigGraphPath&, std::deque<ContigGraphPath>&, ContigGraph&, std::deque<ContigGraphPath>&)':
../src/release/idba_tran.cpp:241:33: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
  241 |         if (flag && path.size() > option.min_transcript)
      |                     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
../src/release/idba_tran.cpp: In function 'void Assemble(HashGraph&)':
../src/release/idba_tran.cpp:523:35: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
  523 |         if (transcripts[i].size() >= option.min_transcript)
      |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o shuffle_reads.o `test -f '../src/tools/shuffle_reads.cpp' || echo './'`../src/tools/shuffle_reads.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o scaffold.o `test -f '../src/tools/scaffold.cpp' || echo './'`../src/tools/scaffold.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o validate_component.o `test -f '../src/tools/validate_component.cpp' || echo './'`../src/tools/validate_component.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fa2fq.o `test -f '../src/tools/fa2fq.cpp' || echo './'`../src/tools/fa2fq.cpp
In file included from ../src/container/hash_table.h:23,
                 from ../src/graph/hash_graph.h:22,
                 from ../src/assembly/local_assembler.h:15,
                 from ../src/tools/scaffold.cpp:21:
../src/basic/hash.h:18:26: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   18 | struct Hash: public std::unary_function<T, uint64_t>
      |                          ^~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/refwrap.h:39,
                 from /usr/include/c++/12/deque:65,
                 from ../src/tools/scaffold.cpp:11:
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:25:34: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   25 | struct Hash<int8_t>: public std::unary_function<int8_t, uint64_t>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:32:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   32 | struct Hash<uint8_t>: public std::unary_function<uint8_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:39:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   39 | struct Hash<int16_t>: public std::unary_function<int16_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:46:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   46 | struct Hash<uint16_t>: public std::unary_function<uint16_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:53:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   53 | struct Hash<int32_t>: public std::unary_function<int32_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:60:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   60 | struct Hash<uint32_t>: public std::unary_function<uint32_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:67:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   67 | struct Hash<int64_t>: public std::unary_function<int64_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:74:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   74 | struct Hash<uint64_t>: public std::unary_function<uint64_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/tools/validate_component.cpp: In function 'int main(int, char**)':
../src/tools/validate_component.cpp:141:13: warning: unused variable 'ref_id' [-Wunused-variable]
  141 |         int ref_id = dict[record.ref_name];
      |             ^~~~~~
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o validate_rna.o `test -f '../src/tools/validate_rna.cpp' || echo './'`../src/tools/validate_rna.cpp
../src/tools/validate_rna.cpp: In function 'int main(int, char**)':
../src/tools/validate_rna.cpp:396:19: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
  396 |             fscanf(flist, "%s %lf", buf, &coverage[i]);
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o validate_contigs_mummer.o `test -f '../src/tools/validate_contigs_mummer.cpp' || echo './'`../src/tools/validate_contigs_mummer.cpp
../src/tools/validate_contigs_mummer.cpp: In function 'int main(int, char**)':
../src/tools/validate_contigs_mummer.cpp:218:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  218 |     fgets(line, MaxLine, fcoord);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
../src/tools/validate_contigs_mummer.cpp:219:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  219 |     fgets(line, MaxLine, fcoord);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
../src/tools/validate_contigs_mummer.cpp:220:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  220 |     fgets(line, MaxLine, fcoord);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
../src/tools/validate_contigs_mummer.cpp:221:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  221 |     fgets(line, MaxLine, fcoord);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
../src/tools/validate_contigs_mummer.cpp:222:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  222 |     fgets(line, MaxLine, fcoord);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o print_graph.o `test -f '../src/tools/print_graph.cpp' || echo './'`../src/tools/print_graph.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o idba_tran_test.o `test -f '../src/tools/idba_tran_test.cpp' || echo './'`../src/tools/idba_tran_test.cpp
In file included from ../src/container/hash_map.h:14,
                 from ../src/graph/contig_graph.h:19,
                 from ../src/tools/print_graph.cpp:9:
../src/basic/hash.h:18:26: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   18 | struct Hash: public std::unary_function<T, uint64_t>
      |                          ^~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/refwrap.h:39,
                 from /usr/include/c++/12/deque:65,
                 from ../src/graph/contig_graph.h:14:
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:25:34: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   25 | struct Hash<int8_t>: public std::unary_function<int8_t, uint64_t>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:32:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   32 | struct Hash<uint8_t>: public std::unary_function<uint8_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:39:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   39 | struct Hash<int16_t>: public std::unary_function<int16_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:46:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   46 | struct Hash<uint16_t>: public std::unary_function<uint16_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:53:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   53 | struct Hash<int32_t>: public std::unary_function<int32_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:60:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   60 | struct Hash<uint32_t>: public std::unary_function<uint32_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:67:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   67 | struct Hash<int64_t>: public std::unary_function<int64_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:74:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   74 | struct Hash<uint64_t>: public std::unary_function<uint64_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from ../src/container/hash_table.h:23,
                 from ../src/graph/hash_graph.h:22,
                 from ../src/assembly/local_assembler.h:15,
                 from ../src/tools/idba_tran_test.cpp:21:
../src/basic/hash.h:18:26: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   18 | struct Hash: public std::unary_function<T, uint64_t>
      |                          ^~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/refwrap.h:39,
                 from /usr/include/c++/12/deque:65,
                 from ../src/tools/idba_tran_test.cpp:11:
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:25:34: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   25 | struct Hash<int8_t>: public std::unary_function<int8_t, uint64_t>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:32:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   32 | struct Hash<uint8_t>: public std::unary_function<uint8_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:39:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   39 | struct Hash<int16_t>: public std::unary_function<int16_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:46:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   46 | struct Hash<uint16_t>: public std::unary_function<uint16_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:53:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   53 | struct Hash<int32_t>: public std::unary_function<int32_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:60:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   60 | struct Hash<uint32_t>: public std::unary_function<uint32_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:67:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   67 | struct Hash<int64_t>: public std::unary_function<int64_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:74:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   74 | struct Hash<uint64_t>: public std::unary_function<uint64_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sample_reads.o `test -f '../src/tools/sample_reads.cpp' || echo './'`../src/tools/sample_reads.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sort_psl.o `test -f '../src/tools/sort_psl.cpp' || echo './'`../src/tools/sort_psl.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sort_reads.o `test -f '../src/tools/sort_reads.cpp' || echo './'`../src/tools/sort_reads.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o filter_contigs.o `test -f '../src/tools/filter_contigs.cpp' || echo './'`../src/tools/filter_contigs.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parallel_rna_blat.o `test -f '../src/tools/parallel_rna_blat.cpp' || echo './'`../src/tools/parallel_rna_blat.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o filter_blat.o `test -f '../src/tools/filter_blat.cpp' || echo './'`../src/tools/filter_blat.cpp
../src/tools/parallel_rna_blat.cpp: In function 'void CreateFile(const std::string&)':
../src/tools/parallel_rna_blat.cpp:47:11: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
   47 |     system(cmd.c_str());
      |     ~~~~~~^~~~~~~~~~~~~
../src/tools/parallel_rna_blat.cpp: In function 'void RemoveFile(const std::string&)':
../src/tools/parallel_rna_blat.cpp:53:11: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
   53 |     system(cmd.c_str());
      |     ~~~~~~^~~~~~~~~~~~~
../src/tools/parallel_rna_blat.cpp: In function 'void Append(const std::string&, const std::string&)':
../src/tools/parallel_rna_blat.cpp:59:11: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
   59 |     system(cmd.c_str());
      |     ~~~~~~^~~~~~~~~~~~~
../src/tools/parallel_rna_blat.cpp: In function 'void RunBlat(const std::string&)':
../src/tools/parallel_rna_blat.cpp:96:19: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
   96 |             system(cmd.c_str());
      |             ~~~~~~^~~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o split_fa.o `test -f '../src/tools/split_fa.cpp' || echo './'`../src/tools/split_fa.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test.o `test -f '../src/tools/test.cpp' || echo './'`../src/tools/test.cpp
../src/tools/test.cpp:6:32: warning: extra tokens at end of #include directive
    6 | #include "graph/contig_graph.h";
      |                                ^
../src/tools/test.cpp:7:31: warning: extra tokens at end of #include directive
    7 | #include "sequence/sequence.h";
      |                               ^
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o validate_reads_blat.o `test -f '../src/tools/validate_reads_blat.cpp' || echo './'`../src/tools/validate_reads_blat.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o split_fq.o `test -f '../src/tools/split_fq.cpp' || echo './'`../src/tools/split_fq.cpp
In file included from ../src/container/hash_map.h:14,
                 from ../src/graph/contig_graph.h:19,
                 from ../src/tools/test.cpp:6:
../src/basic/hash.h:18:26: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   18 | struct Hash: public std::unary_function<T, uint64_t>
      |                          ^~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
                 from /usr/include/c++/12/bits/locale_classes.h:40,
                 from /usr/include/c++/12/bits/ios_base.h:41,
                 from /usr/include/c++/12/ios:42,
                 from /usr/include/c++/12/ostream:38,
                 from /usr/include/c++/12/iostream:39,
                 from ../src/tools/test.cpp:1:
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:25:34: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   25 | struct Hash<int8_t>: public std::unary_function<int8_t, uint64_t>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:32:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   32 | struct Hash<uint8_t>: public std::unary_function<uint8_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:39:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   39 | struct Hash<int16_t>: public std::unary_function<int16_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:46:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   46 | struct Hash<uint16_t>: public std::unary_function<uint16_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:53:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   53 | struct Hash<int32_t>: public std::unary_function<int32_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:60:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   60 | struct Hash<uint32_t>: public std::unary_function<uint32_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:67:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   67 | struct Hash<int64_t>: public std::unary_function<int64_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:74:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   74 | struct Hash<uint64_t>: public std::unary_function<uint64_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fq2fa.o `test -f '../src/release/fq2fa.cpp' || echo './'`../src/release/fq2fa.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o validate_contigs_blat.o `test -f '../src/release/validate_contigs_blat.cpp' || echo './'`../src/release/validate_contigs_blat.cpp
In file included from /usr/include/c++/12/vector:70,
                 from ../src/tools/validate_reads_blat.cpp:16:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
  523 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
    inlined from 'int main(int, char**)' at ../src/tools/validate_reads_blat.cpp:71:24:
/usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
 1032 |           _M_fill_insert(end(), __new_size - size(), __x);
      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../src/release/validate_contigs_blat.cpp: In function 'int main(int, char**)':
../src/release/validate_contigs_blat.cpp:388:19: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
  388 |             fscanf(flist, "%s %lf", buf, &coverage[i]);
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o raw_n50.o `test -f '../src/release/raw_n50.cpp' || echo './'`../src/release/raw_n50.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parallel_blat.o `test -f '../src/release/parallel_blat.cpp' || echo './'`../src/release/parallel_blat.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sim_reads_tran.o `test -f '../src/release/sim_reads_tran.cpp' || echo './'`../src/release/sim_reads_tran.cpp
../src/release/parallel_blat.cpp: In function 'void CreateFile(const std::string&)':
../src/release/parallel_blat.cpp:47:11: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
   47 |     system(cmd.c_str());
      |     ~~~~~~^~~~~~~~~~~~~
../src/release/parallel_blat.cpp: In function 'void RemoveFile(const std::string&)':
../src/release/parallel_blat.cpp:53:11: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
   53 |     system(cmd.c_str());
      |     ~~~~~~^~~~~~~~~~~~~
../src/release/parallel_blat.cpp: In function 'void Append(const std::string&, const std::string&)':
../src/release/parallel_blat.cpp:59:11: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
   59 |     system(cmd.c_str());
      |     ~~~~~~^~~~~~~~~~~~~
../src/release/parallel_blat.cpp: In function 'void RunBlat(const std::string&)':
../src/release/parallel_blat.cpp:96:19: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result]
   96 |             system(cmd.c_str());
      |             ~~~~~~^~~~~~~~~~~~~
../src/release/sim_reads_tran.cpp: In function 'int main(int, char**)':
../src/release/sim_reads_tran.cpp:89:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
   89 |         fscanf(flist, "%s %lf", buf, &weight[i]);
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o filterfa.o `test -f '../src/release/filterfa.cpp' || echo './'`../src/release/filterfa.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o split_scaffold.o `test -f '../src/release/split_scaffold.cpp' || echo './'`../src/release/split_scaffold.cpp
g++ -DHAVE_CONFIG_H -I. -I.. -I../src -I../gtest_src   -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sim_reads.o `test -f '../src/release/sim_reads.cpp' || echo './'`../src/release/sim_reads.cpp
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o idba idba.o  ../lib/libassembly.a  -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o idba_ud idba_ud.o  ../lib/libassembly.a  -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o idba_tran idba_tran.o  ../lib/libassembly.a  -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o idba_hybrid idba_hybrid.o  ../lib/libassembly.a  -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o shuffle_reads shuffle_reads.o  ../lib/libassembly.a  -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o scaffold scaffold.o  ../lib/libassembly.a  -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o validate_component validate_component.o  ../lib/libassembly.a  -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o fa2fq fa2fq.o  ../lib/libassembly.a  -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o validate_rna validate_rna.o  ../lib/libassembly.a  -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o validate_contigs_mummer validate_contigs_mummer.o  ../lib/libassembly.a  -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o print_graph print_graph.o  ../lib/libassembly.a  -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o idba_tran_test idba_tran_test.o  ../lib/libassembly.a  -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o sample_reads sample_reads.o  ../lib/libassembly.a  -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o sort_psl sort_psl.o  ../lib/libassembly.a  -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o sort_reads sort_reads.o  ../lib/libassembly.a  -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o filter_contigs filter_contigs.o  ../lib/libassembly.a  -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o parallel_rna_blat parallel_rna_blat.o  ../lib/libassembly.a  -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o filter_blat filter_blat.o  ../lib/libassembly.a  -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o split_fa split_fa.o  ../lib/libassembly.a  -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o test test.o  ../lib/libassembly.a  -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o validate_reads_blat validate_reads_blat.o  ../lib/libassembly.a  -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o split_fq split_fq.o  ../lib/libassembly.a  -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o fq2fa fq2fa.o  ../lib/libassembly.a  -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o validate_contigs_blat validate_contigs_blat.o  ../lib/libassembly.a  -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o raw_n50 raw_n50.o  ../lib/libassembly.a  -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o parallel_blat parallel_blat.o  ../lib/libassembly.a  -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o sim_reads_tran sim_reads_tran.o  ../lib/libassembly.a  -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o filterfa filterfa.o  ../lib/libassembly.a  -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o split_scaffold split_scaffold.o  ../lib/libassembly.a  -latomic
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o sim_reads sim_reads.o  ../lib/libassembly.a  -latomic
make[3]: Leaving directory '/build/idba-1.1.3/bin'
Making all in test
make[3]: Entering directory '/build/idba-1.1.3/test'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/idba-1.1.3/test'
Making all in script
make[3]: Entering directory '/build/idba-1.1.3/script'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/idba-1.1.3/script'
make[3]: Entering directory '/build/idba-1.1.3'
make[3]: Leaving directory '/build/idba-1.1.3'
make[2]: Leaving directory '/build/idba-1.1.3'
make[1]: Leaving directory '/build/idba-1.1.3'
   debian/rules override_dh_auto_test
make[1]: Entering directory '/build/idba-1.1.3'
# /usr/bin/make unittest
export PATH=/build/idba-1.1.3/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path && cd test && /usr/bin/make check
make[2]: Entering directory '/build/idba-1.1.3/test'
/usr/bin/make  compact_sequence_unittest hash_table_unittest bit_edges_unittest kmer_unittest hash_set_unittest atomic_integer_unittest vertex_status_unittest histgram_unittest managed_list_unittest sequence_unittest short_sequence_unittest hash_map_unittest
make[3]: Entering directory '/build/idba-1.1.3/test'
g++ -DHAVE_CONFIG_H -I. -I.. -I../src  -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gtest_main.o `test -f '../gtest_src/gtest/gtest_main.cc' || echo './'`../gtest_src/gtest/gtest_main.cc
g++ -DHAVE_CONFIG_H -I. -I.. -I../src  -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o compact_sequence_unittest.o `test -f '../src/test/compact_sequence_unittest.cpp' || echo './'`../src/test/compact_sequence_unittest.cpp
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o compact_sequence_unittest gtest_main.o compact_sequence_unittest.o  ../lib/libassembly.a -lgtest  -latomic
g++ -DHAVE_CONFIG_H -I. -I.. -I../src  -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o hash_table_unittest.o `test -f '../src/test/hash_table_unittest.cpp' || echo './'`../src/test/hash_table_unittest.cpp
In file included from ../src/container/hash_table.h:23,
                 from ../src/test/hash_table_unittest.cpp:11:
../src/basic/hash.h:18:26: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   18 | struct Hash: public std::unary_function<T, uint64_t>
      |                          ^~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/unique_ptr.h:37,
                 from /usr/include/c++/12/memory:76,
                 from /usr/include/gtest/gtest.h:54,
                 from ../src/test/hash_table_unittest.cpp:9:
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:25:34: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   25 | struct Hash<int8_t>: public std::unary_function<int8_t, uint64_t>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:32:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   32 | struct Hash<uint8_t>: public std::unary_function<uint8_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:39:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   39 | struct Hash<int16_t>: public std::unary_function<int16_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:46:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   46 | struct Hash<uint16_t>: public std::unary_function<uint16_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:53:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   53 | struct Hash<int32_t>: public std::unary_function<int32_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:60:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   60 | struct Hash<uint32_t>: public std::unary_function<uint32_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:67:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   67 | struct Hash<int64_t>: public std::unary_function<int64_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:74:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   74 | struct Hash<uint64_t>: public std::unary_function<uint64_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /usr/include/c++/12/map:60,
                 from /usr/include/gtest/internal/gtest-internal.h:62,
                 from /usr/include/gtest/gtest-printers.h:114,
                 from /usr/include/gtest/gtest-matchers.h:48,
                 from /usr/include/gtest/internal/gtest-death-test-internal.h:46,
                 from /usr/include/gtest/gtest-death-test.h:43,
                 from /usr/include/gtest/gtest.h:60:
/usr/include/c++/12/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = Kmer; _Val = std::pair<const Kmer, int>; _KeyOfValue = std::_Select1st<std::pair<const Kmer, int> >; _Compare = std::less<Kmer>; _Alloc = std::allocator<std::pair<const Kmer, int> >]':
/usr/include/c++/12/bits/stl_tree.h:2209:5: note: parameter passing for argument of type 'std::_Rb_tree<Kmer, std::pair<const Kmer, int>, std::_Select1st<std::pair<const Kmer, int> >, std::less<Kmer>, std::allocator<std::pair<const Kmer, int> > >::const_iterator' changed in GCC 7.1
 2209 |     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const Kmer&>, std::tuple<>}; _Key = Kmer; _Val = std::pair<const Kmer, int>; _KeyOfValue = std::_Select1st<std::pair<const Kmer, int> >; _Compare = std::less<Kmer>; _Alloc = std::allocator<std::pair<const Kmer, int> >]':
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type 'std::_Rb_tree<Kmer, std::pair<const Kmer, int>, std::_Select1st<std::pair<const Kmer, int> >, std::less<Kmer>, std::allocator<std::pair<const Kmer, int> > >::const_iterator' changed in GCC 7.1
 2457 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/map:61:
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Kmer; _Tp = int; _Compare = std::less<Kmer>; _Alloc = std::allocator<std::pair<const Kmer, int> >]',
    inlined from 'virtual void HashTableTest_Iterator_Test::TestBody()' at ../src/test/hash_table_unittest.cpp:111:9:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type 'std::_Rb_tree<Kmer, std::pair<const Kmer, int>, std::_Select1st<std::pair<const Kmer, int> >, std::less<Kmer>, std::allocator<std::pair<const Kmer, int> > >::const_iterator' changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Kmer; _Tp = int; _Compare = std::less<Kmer>; _Alloc = std::allocator<std::pair<const Kmer, int> >]',
    inlined from 'virtual void HashTableTest_Find_Test::TestBody()' at ../src/test/hash_table_unittest.cpp:145:9:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type 'std::_Rb_tree<Kmer, std::pair<const Kmer, int>, std::_Select1st<std::pair<const Kmer, int> >, std::less<Kmer>, std::allocator<std::pair<const Kmer, int> > >::const_iterator' changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Kmer; _Tp = int; _Compare = std::less<Kmer>; _Alloc = std::allocator<std::pair<const Kmer, int> >]',
    inlined from 'virtual void HashTableTest_WriteAndRead_Test::TestBody()' at ../src/test/hash_table_unittest.cpp:228:9:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type 'std::_Rb_tree<Kmer, std::pair<const Kmer, int>, std::_Select1st<std::pair<const Kmer, int> >, std::less<Kmer>, std::allocator<std::pair<const Kmer, int> > >::const_iterator' changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Kmer; _Tp = int; _Compare = std::less<Kmer>; _Alloc = std::allocator<std::pair<const Kmer, int> >]',
    inlined from 'virtual void HashTableTest::SetUp()' at ../src/test/hash_table_unittest.cpp:72:30:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type 'std::_Rb_tree<Kmer, std::pair<const Kmer, int>, std::_Select1st<std::pair<const Kmer, int> >, std::less<Kmer>, std::allocator<std::pair<const Kmer, int> > >::const_iterator' changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o hash_table_unittest gtest_main.o hash_table_unittest.o  ../lib/libassembly.a -lgtest  -latomic
g++ -DHAVE_CONFIG_H -I. -I.. -I../src  -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bit_edges_unittest.o `test -f '../src/test/bit_edges_unittest.cpp' || echo './'`../src/test/bit_edges_unittest.cpp
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o bit_edges_unittest gtest_main.o bit_edges_unittest.o  ../lib/libassembly.a -lgtest  -latomic
g++ -DHAVE_CONFIG_H -I. -I.. -I../src  -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o kmer_unittest.o `test -f '../src/test/kmer_unittest.cpp' || echo './'`../src/test/kmer_unittest.cpp
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o kmer_unittest gtest_main.o kmer_unittest.o  ../lib/libassembly.a -lgtest  -latomic
g++ -DHAVE_CONFIG_H -I. -I.. -I../src  -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o hash_set_unittest.o `test -f '../src/test/hash_set_unittest.cpp' || echo './'`../src/test/hash_set_unittest.cpp
In file included from ../src/container/hash_set.h:13,
                 from ../src/test/hash_set_unittest.cpp:12:
../src/basic/hash.h:18:26: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   18 | struct Hash: public std::unary_function<T, uint64_t>
      |                          ^~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/unique_ptr.h:37,
                 from /usr/include/c++/12/memory:76,
                 from /usr/include/gtest/gtest.h:54,
                 from ../src/test/hash_set_unittest.cpp:10:
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:25:34: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   25 | struct Hash<int8_t>: public std::unary_function<int8_t, uint64_t>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:32:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   32 | struct Hash<uint8_t>: public std::unary_function<uint8_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:39:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   39 | struct Hash<int16_t>: public std::unary_function<int16_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:46:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   46 | struct Hash<uint16_t>: public std::unary_function<uint16_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:53:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   53 | struct Hash<int32_t>: public std::unary_function<int32_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:60:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   60 | struct Hash<uint32_t>: public std::unary_function<uint32_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:67:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   67 | struct Hash<int64_t>: public std::unary_function<int64_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:74:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   74 | struct Hash<uint64_t>: public std::unary_function<uint64_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o hash_set_unittest gtest_main.o hash_set_unittest.o  ../lib/libassembly.a -lgtest  -latomic
g++ -DHAVE_CONFIG_H -I. -I.. -I../src  -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atomic_integer_unittest.o `test -f '../src/test/atomic_integer_unittest.cpp' || echo './'`../src/test/atomic_integer_unittest.cpp
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o atomic_integer_unittest gtest_main.o atomic_integer_unittest.o  ../lib/libassembly.a -lgtest  -latomic
g++ -DHAVE_CONFIG_H -I. -I.. -I../src  -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vertex_status_unittest.o `test -f '../src/test/vertex_status_unittest.cpp' || echo './'`../src/test/vertex_status_unittest.cpp
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o vertex_status_unittest gtest_main.o vertex_status_unittest.o  ../lib/libassembly.a -lgtest  -latomic
g++ -DHAVE_CONFIG_H -I. -I.. -I../src  -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o histgram_unittest.o `test -f '../src/test/histgram_unittest.cpp' || echo './'`../src/test/histgram_unittest.cpp
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
                 from /usr/include/c++/12/functional:64,
                 from /usr/include/gtest/gtest-printers.h:104,
                 from /usr/include/gtest/gtest-matchers.h:48,
                 from /usr/include/gtest/internal/gtest-death-test-internal.h:46,
                 from /usr/include/gtest/gtest-death-test.h:43,
                 from /usr/include/gtest/gtest.h:60,
                 from ../src/test/histgram_unittest.cpp:9:
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
 1802 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
 1908 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
 1922 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
                 from /usr/include/gtest/gtest.h:57:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]',
    inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from 'virtual void HistgramTest::SetUp()' at ../src/test/histgram_unittest.cpp:26:24:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
    inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
    inlined from 'virtual void HistgramTest_Median_Test::TestBody()' at ../src/test/histgram_unittest.cpp:132:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
    inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
    inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
    inlined from 'virtual void HistgramTest_Median_Test::TestBody()' at ../src/test/histgram_unittest.cpp:132:9:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
 1849 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
 1854 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o histgram_unittest gtest_main.o histgram_unittest.o  ../lib/libassembly.a -lgtest  -latomic
g++ -DHAVE_CONFIG_H -I. -I.. -I../src  -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o managed_list_unittest.o `test -f '../src/test/managed_list_unittest.cpp' || echo './'`../src/test/managed_list_unittest.cpp
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o managed_list_unittest gtest_main.o managed_list_unittest.o  ../lib/libassembly.a -lgtest  -latomic
g++ -DHAVE_CONFIG_H -I. -I.. -I../src  -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence_unittest.o `test -f '../src/test/sequence_unittest.cpp' || echo './'`../src/test/sequence_unittest.cpp
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o sequence_unittest gtest_main.o sequence_unittest.o  ../lib/libassembly.a -lgtest  -latomic
g++ -DHAVE_CONFIG_H -I. -I.. -I../src  -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o short_sequence_unittest.o `test -f '../src/test/short_sequence_unittest.cpp' || echo './'`../src/test/short_sequence_unittest.cpp
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o short_sequence_unittest gtest_main.o short_sequence_unittest.o  ../lib/libassembly.a -lgtest  -latomic
g++ -DHAVE_CONFIG_H -I. -I.. -I../src  -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -c -o hash_map_unittest.o `test -f '../src/test/hash_map_unittest.cpp' || echo './'`../src/test/hash_map_unittest.cpp
In file included from ../src/container/hash_map.h:14,
                 from ../src/test/hash_map_unittest.cpp:11:
../src/basic/hash.h:18:26: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   18 | struct Hash: public std::unary_function<T, uint64_t>
      |                          ^~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/unique_ptr.h:37,
                 from /usr/include/c++/12/memory:76,
                 from /usr/include/gtest/gtest.h:54,
                 from ../src/test/hash_map_unittest.cpp:9:
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:25:34: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   25 | struct Hash<int8_t>: public std::unary_function<int8_t, uint64_t>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:32:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   32 | struct Hash<uint8_t>: public std::unary_function<uint8_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:39:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   39 | struct Hash<int16_t>: public std::unary_function<int16_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:46:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   46 | struct Hash<uint16_t>: public std::unary_function<uint16_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:53:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   53 | struct Hash<int32_t>: public std::unary_function<int32_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:60:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   60 | struct Hash<uint32_t>: public std::unary_function<uint32_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:67:35: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   67 | struct Hash<int64_t>: public std::unary_function<int64_t, uint64_t>
      |                                   ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
../src/basic/hash.h:74:36: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
   74 | struct Hash<uint64_t>: public std::unary_function<uint64_t, uint64_t>
      |                                    ^~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /usr/include/c++/12/map:60,
                 from /usr/include/gtest/internal/gtest-internal.h:62,
                 from /usr/include/gtest/gtest-printers.h:114,
                 from /usr/include/gtest/gtest-matchers.h:48,
                 from /usr/include/gtest/internal/gtest-death-test-internal.h:46,
                 from /usr/include/gtest/gtest-death-test.h:43,
                 from /usr/include/gtest/gtest.h:60:
/usr/include/c++/12/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = Kmer; _Val = std::pair<const Kmer, int>; _KeyOfValue = std::_Select1st<std::pair<const Kmer, int> >; _Compare = std::less<Kmer>; _Alloc = std::allocator<std::pair<const Kmer, int> >]':
/usr/include/c++/12/bits/stl_tree.h:2209:5: note: parameter passing for argument of type 'std::_Rb_tree<Kmer, std::pair<const Kmer, int>, std::_Select1st<std::pair<const Kmer, int> >, std::less<Kmer>, std::allocator<std::pair<const Kmer, int> > >::const_iterator' changed in GCC 7.1
 2209 |     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const Kmer&>, std::tuple<>}; _Key = Kmer; _Val = std::pair<const Kmer, int>; _KeyOfValue = std::_Select1st<std::pair<const Kmer, int> >; _Compare = std::less<Kmer>; _Alloc = std::allocator<std::pair<const Kmer, int> >]':
/usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type 'std::_Rb_tree<Kmer, std::pair<const Kmer, int>, std::_Select1st<std::pair<const Kmer, int> >, std::less<Kmer>, std::allocator<std::pair<const Kmer, int> > >::const_iterator' changed in GCC 7.1
 2457 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/map:61:
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Kmer; _Tp = int; _Compare = std::less<Kmer>; _Alloc = std::allocator<std::pair<const Kmer, int> >]',
    inlined from 'virtual void HashMapTest_Iterator_Test::TestBody()' at ../src/test/hash_map_unittest.cpp:72:9:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type 'std::_Rb_tree<Kmer, std::pair<const Kmer, int>, std::_Select1st<std::pair<const Kmer, int> >, std::less<Kmer>, std::allocator<std::pair<const Kmer, int> > >::const_iterator' changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Kmer; _Tp = int; _Compare = std::less<Kmer>; _Alloc = std::allocator<std::pair<const Kmer, int> >]',
    inlined from 'virtual void HashMapTest::SetUp()' at ../src/test/hash_map_unittest.cpp:34:28:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type 'std::_Rb_tree<Kmer, std::pair<const Kmer, int>, std::_Select1st<std::pair<const Kmer, int> >, std::less<Kmer>, std::allocator<std::pair<const Kmer, int> > >::const_iterator' changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = Kmer; _Tp = int; _Compare = std::less<Kmer>; _Alloc = std::allocator<std::pair<const Kmer, int> >]',
    inlined from 'virtual void HashMapTest_Find_Test::TestBody()' at ../src/test/hash_map_unittest.cpp:108:9:
/usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type 'std::_Rb_tree<Kmer, std::pair<const Kmer, int>, std::_Select1st<std::pair<const Kmer, int> >, std::less<Kmer>, std::allocator<std::pair<const Kmer, int> > >::const_iterator' changed in GCC 7.1
  511 |           __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  512 |                                             std::tuple<const key_type&>(__k),
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  513 |                                             std::tuple<>());
      |                                             ~~~~~~~~~~~~~~~
g++ -Wall -O3 -fopenmp -pthread -g -O2 -ffile-prefix-map=/build/idba-1.1.3=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o hash_map_unittest gtest_main.o hash_map_unittest.o  ../lib/libassembly.a -lgtest  -latomic
make[3]: Leaving directory '/build/idba-1.1.3/test'
/usr/bin/make  check-TESTS
make[3]: Entering directory '/build/idba-1.1.3/test'
make[4]: Entering directory '/build/idba-1.1.3/test'
PASS: compact_sequence_unittest
PASS: hash_table_unittest
PASS: bit_edges_unittest
PASS: kmer_unittest
PASS: hash_set_unittest
PASS: atomic_integer_unittest
PASS: vertex_status_unittest
PASS: histgram_unittest
PASS: managed_list_unittest
PASS: sequence_unittest
PASS: short_sequence_unittest
PASS: hash_map_unittest
============================================================================
Testsuite summary for idba 1.1.3
============================================================================
# TOTAL: 12
# PASS:  12
# SKIP:  0
# XFAIL: 0
# FAIL:  0
# XPASS: 0
# ERROR: 0
============================================================================
make[4]: Leaving directory '/build/idba-1.1.3/test'
make[3]: Leaving directory '/build/idba-1.1.3/test'
make[2]: Leaving directory '/build/idba-1.1.3/test'
make[1]: Leaving directory '/build/idba-1.1.3'
   create-stamp debian/debhelper-build-stamp
   dh_prep
   dh_installdirs
   dh_auto_install
	make -j4 install DESTDIR=/build/idba-1.1.3/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/build/idba-1.1.3'
Making install in lib
make[2]: Entering directory '/build/idba-1.1.3/lib'
make[3]: Entering directory '/build/idba-1.1.3/lib'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/build/idba-1.1.3/lib'
make[2]: Leaving directory '/build/idba-1.1.3/lib'
Making install in bin
make[2]: Entering directory '/build/idba-1.1.3/bin'
make[3]: Entering directory '/build/idba-1.1.3/bin'
 /usr/bin/mkdir -p '/build/idba-1.1.3/debian/tmp/usr/bin'
make[3]: Nothing to be done for 'install-data-am'.
  /usr/bin/install -c idba idba_ud idba_tran idba_hybrid '/build/idba-1.1.3/debian/tmp/usr/bin'
make[3]: Leaving directory '/build/idba-1.1.3/bin'
make[2]: Leaving directory '/build/idba-1.1.3/bin'
Making install in test
make[2]: Entering directory '/build/idba-1.1.3/test'
make[3]: Entering directory '/build/idba-1.1.3/test'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/build/idba-1.1.3/test'
make[2]: Leaving directory '/build/idba-1.1.3/test'
Making install in script
make[2]: Entering directory '/build/idba-1.1.3/script'
make[3]: Entering directory '/build/idba-1.1.3/script'
make[3]: Nothing to be done for 'install-data-am'.
 /usr/bin/mkdir -p '/build/idba-1.1.3/debian/tmp/usr/bin'
 /usr/bin/install -c scan.py run-unittest.py validate_blat validate_blat_parallel '/build/idba-1.1.3/debian/tmp/usr/bin'
make[3]: Leaving directory '/build/idba-1.1.3/script'
make[2]: Leaving directory '/build/idba-1.1.3/script'
make[2]: Entering directory '/build/idba-1.1.3'
make[3]: Entering directory '/build/idba-1.1.3'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/build/idba-1.1.3'
make[2]: Leaving directory '/build/idba-1.1.3'
make[1]: Leaving directory '/build/idba-1.1.3'
   debian/rules override_dh_install
make[1]: Entering directory '/build/idba-1.1.3'
dh_install
# for the moment the role of these scripts is totally unknown but they do not seem to be necessary
mv debian/idba/usr/bin/*.py debian/idba/usr/lib/idba/
mv debian/idba/usr/bin/validate_blat* debian/idba/usr/lib/idba/
make[1]: Leaving directory '/build/idba-1.1.3'
   dh_installdocs
   dh_installchangelogs
   dh_installexamples
   dh_installman
   dh_perl
   dh_link
   dh_strip_nondeterminism
   dh_compress
   dh_fixperms
   dh_missing
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/idba-extra/usr/bin/validate_contigs_mummer contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/idba-extra/usr/bin/validate_reads_blat contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/idba-extra/usr/bin/parallel_blat contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/idba-extra/usr/bin/sort_reads contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/idba-extra/usr/bin/raw_n50 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/idba-extra/usr/bin/filter_blat contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/idba-extra/usr/bin/shuffle_reads contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/idba-extra/usr/bin/split_fq contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/idba/usr/bin/idba_tran contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/idba/usr/bin/idba_ud contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/idba/usr/bin/idba_hybrid contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/idba/usr/bin/idba contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/idba-extra/usr/bin/sim_reads_tran contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/idba-extra/usr/bin/validate_contigs_blat contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/idba-extra/usr/bin/scaffold contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/idba-extra/usr/bin/split_fa contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/idba-extra/usr/bin/validate_rna contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/idba-extra/usr/bin/validate_component contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/idba-extra/usr/bin/sort_psl contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/idba-extra/usr/bin/parallel_rna_blat contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/idba-extra/usr/bin/filter_contigs contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/idba-extra/usr/bin/print_graph contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/idba-extra/usr/bin/split_scaffold contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/idba-extra/usr/bin/fa2fq contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/idba-extra/usr/bin/sample_reads contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/idba-extra/usr/bin/fq2fa contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/idba-extra/usr/bin/sim_reads contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
   dh_installdeb
   dh_gencontrol
dpkg-gencontrol: warning: package idba: substitution variable ${perl:Depends} unused, but is defined
dpkg-gencontrol: warning: package idba: substitution variable ${perl:Depends} unused, but is defined
   dh_md5sums
   dh_builddeb
dpkg-deb: building package 'idba-extra' in '../idba-extra_1.1.3-8_armhf.deb'.
dpkg-deb: building package 'idba-extra-dbgsym' in '../idba-extra-dbgsym_1.1.3-8_armhf.deb'.
dpkg-deb: building package 'idba' in '../idba_1.1.3-8_armhf.deb'.
dpkg-deb: building package 'idba-dbgsym' in '../idba-dbgsym_1.1.3-8_armhf.deb'.
 dpkg-genbuildinfo --build=binary -O../idba_1.1.3-8_armhf.buildinfo
 dpkg-genchanges --build=binary -O../idba_1.1.3-8_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/9095/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/9095/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/9095 and its subdirectories
I: Current time: Thu May 11 06:34:56 +14 2023
I: pbuilder-time-stamp: 1683736496