I: pbuilder: network access will be disabled during build
I: Current time: Sun May 7 14:01:30 +14 2023
I: pbuilder-time-stamp: 1683417690
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [kineticstools_0.6.1+git20220223.1326a4d+dfsg-2.dsc]
I: copying [./kineticstools_0.6.1+git20220223.1326a4d+dfsg.orig.tar.xz]
I: copying [./kineticstools_0.6.1+git20220223.1326a4d+dfsg-2.debian.tar.xz]
I: Extracting source
gpgv: Signature made Thu Dec 22 04:37:16 2022 +14
gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./kineticstools_0.6.1+git20220223.1326a4d+dfsg-2.dsc: no acceptable signature found
dpkg-source: info: extracting kineticstools in kineticstools-0.6.1+git20220223.1326a4d+dfsg
dpkg-source: info: unpacking kineticstools_0.6.1+git20220223.1326a4d+dfsg.orig.tar.xz
dpkg-source: info: unpacking kineticstools_0.6.1+git20220223.1326a4d+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying man-pages.patch
dpkg-source: info: applying tests-import.patch
dpkg-source: info: applying verbose-testing.patch
dpkg-source: info: applying deactivate-tests-requiring-unavailable-data.patch
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying tests2to3.patch
dpkg-source: info: applying man-align-cols.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/7646/tmp/hooks/D01_modify_environment starting
debug: Running on virt64a.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 May 7 14:02 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/7646/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/7646/tmp/hooks/D02_print_environment starting
I: set
BASH=/bin/sh
BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
BASH_ALIASES=()
BASH_ARGC=()
BASH_ARGV=()
BASH_CMDS=()
BASH_LINENO=([0]="12" [1]="0")
BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf")
BASH_VERSION='5.2.15(1)-release'
BUILDDIR=/build
BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
BUILDUSERNAME=pbuilder2
BUILD_ARCH=armhf
DEBIAN_FRONTEND=noninteractive
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4'
DIRSTACK=()
DISTRIBUTION=bookworm
EUID=0
FUNCNAME=([0]="Echo" [1]="main")
GROUPS=()
HOME=/root
HOSTNAME=i-capture-the-hostname
HOSTTYPE=arm
HOST_ARCH=armhf
IFS='
'
INVOCATION_ID=8f997265e4894c3fb83d4ebc3529deb4
LANG=C
LANGUAGE=it_CH:it
LC_ALL=C
MACHTYPE=arm-unknown-linux-gnueabihf
MAIL=/var/mail/root
OPTERR=1
OPTIND=1
OSTYPE=linux-gnueabihf
PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
PBCURRENTCOMMANDLINEOPERATION=build
PBUILDER_OPERATION=build
PBUILDER_PKGDATADIR=/usr/share/pbuilder
PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
PBUILDER_SYSCONFDIR=/etc
PIPESTATUS=([0]="0")
POSIXLY_CORRECT=y
PPID=7646
PS4='+ '
PWD=/
SHELL=/bin/bash
SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
SHLVL=3
SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.J4O9pjPB/pbuilderrc_anfp --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.J4O9pjPB/b2 --logfile b2/build.log --extrapackages usrmerge kineticstools_0.6.1+git20220223.1326a4d+dfsg-2.dsc'
SUDO_GID=114
SUDO_UID=108
SUDO_USER=jenkins
TERM=unknown
TZ=/usr/share/zoneinfo/Etc/GMT-14
UID=0
USER=root
_='I: set'
http_proxy=http://10.0.0.15:3142/
I: uname -a
Linux i-capture-the-hostname 5.10.0-22-arm64 #1 SMP Debian 5.10.178-3 (2023-04-22) aarch64 GNU/Linux
I: ls -l /bin
total 5072
-rwxr-xr-x 1 root root 838488 Apr 24 11:24 bash
-rwxr-xr-x 3 root root 67144 Sep 19 2022 bunzip2
-rwxr-xr-x 3 root root 67144 Sep 19 2022 bzcat
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep
-rwxr-xr-x 3 root root 67144 Sep 19 2022 bzip2
-rwxr-xr-x 1 root root 67112 Sep 19 2022 bzip2recover
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore
-rwxr-xr-x 1 root root 67632 Sep 21 2022 cat
-rwxr-xr-x 1 root root 67676 Sep 21 2022 chgrp
-rwxr-xr-x 1 root root 67644 Sep 21 2022 chmod
-rwxr-xr-x 1 root root 67684 Sep 21 2022 chown
-rwxr-xr-x 1 root root 133532 Sep 21 2022 cp
-rwxr-xr-x 1 root root 132868 Jan 6 03:20 dash
-rwxr-xr-x 1 root root 133220 Sep 21 2022 date
-rwxr-xr-x 1 root root 67732 Sep 21 2022 dd
-rwxr-xr-x 1 root root 68104 Sep 21 2022 df
-rwxr-xr-x 1 root root 133632 Sep 21 2022 dir
-rwxr-xr-x 1 root root 59128 Mar 23 23:02 dmesg
lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname
-rwxr-xr-x 1 root root 67560 Sep 21 2022 echo
-rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep
-rwxr-xr-x 1 root root 67548 Sep 21 2022 false
-rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep
-rwxr-xr-x 1 root root 55748 Mar 23 23:02 findmnt
-rwsr-xr-x 1 root root 26208 Mar 23 22:15 fusermount
-rwxr-xr-x 1 root root 128608 Jan 25 04:43 grep
-rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip
-rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe
-rwxr-xr-x 1 root root 64220 Apr 10 2022 gzip
-rwxr-xr-x 1 root root 67032 Dec 20 03:33 hostname
-rwxr-xr-x 1 root root 67720 Sep 21 2022 ln
-rwxr-xr-x 1 root root 35132 Mar 23 23:51 login
-rwxr-xr-x 1 root root 133632 Sep 21 2022 ls
-rwxr-xr-x 1 root root 136808 Mar 23 23:02 lsblk
-rwxr-xr-x 1 root root 67800 Sep 21 2022 mkdir
-rwxr-xr-x 1 root root 67764 Sep 21 2022 mknod
-rwxr-xr-x 1 root root 67596 Sep 21 2022 mktemp
-rwxr-xr-x 1 root root 38504 Mar 23 23:02 more
-rwsr-xr-x 1 root root 38496 Mar 23 23:02 mount
-rwxr-xr-x 1 root root 9824 Mar 23 23:02 mountpoint
-rwxr-xr-x 1 root root 133532 Sep 21 2022 mv
lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 67608 Sep 21 2022 pwd
lrwxrwxrwx 1 root root 4 Apr 24 11:24 rbash -> bash
-rwxr-xr-x 1 root root 67600 Sep 21 2022 readlink
-rwxr-xr-x 1 root root 67672 Sep 21 2022 rm
-rwxr-xr-x 1 root root 67600 Sep 21 2022 rmdir
-rwxr-xr-x 1 root root 67400 Nov 3 2022 run-parts
-rwxr-xr-x 1 root root 133372 Jan 6 09:55 sed
lrwxrwxrwx 1 root root 9 May 7 14:02 sh -> /bin/bash
-rwxr-xr-x 1 root root 67584 Sep 21 2022 sleep
-rwxr-xr-x 1 root root 67644 Sep 21 2022 stty
-rwsr-xr-x 1 root root 50800 Mar 23 23:02 su
-rwxr-xr-x 1 root root 67584 Sep 21 2022 sync
-rwxr-xr-x 1 root root 336764 Apr 7 04:25 tar
-rwxr-xr-x 1 root root 67144 Nov 3 2022 tempfile
-rwxr-xr-x 1 root root 133224 Sep 21 2022 touch
-rwxr-xr-x 1 root root 67548 Sep 21 2022 true
-rwxr-xr-x 1 root root 9768 Mar 23 22:15 ulockmgr_server
-rwsr-xr-x 1 root root 22108 Mar 23 23:02 umount
-rwxr-xr-x 1 root root 67572 Sep 21 2022 uname
-rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress
-rwxr-xr-x 1 root root 133632 Sep 21 2022 vdir
-rwxr-xr-x 1 root root 42608 Mar 23 23:02 wdctl
lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat
-rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp
-rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff
-rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep
-rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep
-rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce
-rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep
-rwxr-xr-x 1 root root 2206 Apr 10 2022 zless
-rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore
-rwxr-xr-x 1 root root 4577 Apr 10 2022 znew
I: user script /srv/workspace/pbuilder/7646/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-docutils, python3-pbcore, python3-pbcommand, python3-numpy, python3-h5py, python3-scipy, python3-uritools, python3-pytest, python3-pytest-runner, python3-pytest-xdist
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19329 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-python; however:
Package dh-python is not installed.
pbuilder-satisfydepends-dummy depends on python3; however:
Package python3 is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
pbuilder-satisfydepends-dummy depends on python3-docutils; however:
Package python3-docutils is not installed.
pbuilder-satisfydepends-dummy depends on python3-pbcore; however:
Package python3-pbcore is not installed.
pbuilder-satisfydepends-dummy depends on python3-pbcommand; however:
Package python3-pbcommand is not installed.
pbuilder-satisfydepends-dummy depends on python3-numpy; however:
Package python3-numpy is not installed.
pbuilder-satisfydepends-dummy depends on python3-h5py; however:
Package python3-h5py is not installed.
pbuilder-satisfydepends-dummy depends on python3-scipy; however:
Package python3-scipy is not installed.
pbuilder-satisfydepends-dummy depends on python3-uritools; however:
Package python3-uritools is not installed.
pbuilder-satisfydepends-dummy depends on python3-pytest; however:
Package python3-pytest is not installed.
pbuilder-satisfydepends-dummy depends on python3-pytest-runner; however:
Package python3-pytest-runner is not installed.
pbuilder-satisfydepends-dummy depends on python3-pytest-xdist; however:
Package python3-pytest-xdist is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcurl3-gnutls{a} libcurl4{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhdf5-103-1{a} libhdf5-hl-100{a} libhts3{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblzf1{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libopenjp2-7{a} libpipeline1{a} libpng16-16{a} libpsl5{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libraqm0{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libsz2{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} openssl{a} po-debconf{a} python3{a} python3-attr{a} python3-avro{a} python3-biopython{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-decorator{a} python3-distutils{a} python3-docutils{a} python3-execnet{a} python3-h5py{a} python3-h5py-serial{a} python3-idna{a} python3-iniconfig{a} python3-iso8601{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pbcommand{a} python3-pbcore{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pysam{a} python3-pytest{a} python3-pytest-runner{a} python3-pytest-xdist{a} python3-renderpm{a} python3-reportlab{a} python3-reportlab-accel{a} python3-requests{a} python3-roman{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-tz{a} python3-uritools{a} python3-urllib3{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a}
The following packages are RECOMMENDED but will NOT be installed:
curl javascript-common libarchive-cpio-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libsasl2-modules lynx ncbi-blast+ publicsuffix python-biopython-doc python3-olefile python3-pygments shared-mime-info wget xdg-user-dirs
0 packages upgraded, 141 newly installed, 0 to remove and 0 not upgraded.
Need to get 77.1 MB of archives. After unpacking 250 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main armhf libpython3.11-minimal armhf 3.11.2-6 [798 kB]
Get: 2 http://deb.debian.org/debian bookworm/main armhf libexpat1 armhf 2.5.0-1 [79.9 kB]
Get: 3 http://deb.debian.org/debian bookworm/main armhf python3.11-minimal armhf 3.11.2-6 [1714 kB]
Get: 4 http://deb.debian.org/debian bookworm/main armhf python3-minimal armhf 3.11.2-1+b1 [26.3 kB]
Get: 5 http://deb.debian.org/debian bookworm/main armhf media-types all 10.0.0 [26.1 kB]
Get: 6 http://deb.debian.org/debian bookworm/main armhf mailcap all 3.70+nmu1 [32.0 kB]
Get: 7 http://deb.debian.org/debian bookworm/main armhf mime-support all 3.66 [10.9 kB]
Get: 8 http://deb.debian.org/debian bookworm/main armhf readline-common all 8.2-1.3 [69.0 kB]
Get: 9 http://deb.debian.org/debian bookworm/main armhf libreadline8 armhf 8.2-1.3 [144 kB]
Get: 10 http://deb.debian.org/debian bookworm/main armhf libpython3.11-stdlib armhf 3.11.2-6 [1678 kB]
Get: 11 http://deb.debian.org/debian bookworm/main armhf python3.11 armhf 3.11.2-6 [572 kB]
Get: 12 http://deb.debian.org/debian bookworm/main armhf libpython3-stdlib armhf 3.11.2-1+b1 [9296 B]
Get: 13 http://deb.debian.org/debian bookworm/main armhf python3 armhf 3.11.2-1+b1 [26.3 kB]
Get: 14 http://deb.debian.org/debian bookworm/main armhf sgml-base all 1.31 [15.4 kB]
Get: 15 http://deb.debian.org/debian bookworm/main armhf sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 16 http://deb.debian.org/debian bookworm/main armhf openssl armhf 3.0.8-1 [1373 kB]
Get: 17 http://deb.debian.org/debian bookworm/main armhf ca-certificates all 20230311 [153 kB]
Get: 18 http://deb.debian.org/debian bookworm/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB]
Get: 19 http://deb.debian.org/debian bookworm/main armhf libmagic1 armhf 1:5.44-3 [96.5 kB]
Get: 20 http://deb.debian.org/debian bookworm/main armhf file armhf 1:5.44-3 [41.6 kB]
Get: 21 http://deb.debian.org/debian bookworm/main armhf gettext-base armhf 0.21-12 [157 kB]
Get: 22 http://deb.debian.org/debian bookworm/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get: 23 http://deb.debian.org/debian bookworm/main armhf groff-base armhf 1.22.4-10 [825 kB]
Get: 24 http://deb.debian.org/debian bookworm/main armhf bsdextrautils armhf 2.38.1-5+b1 [78.6 kB]
Get: 25 http://deb.debian.org/debian bookworm/main armhf libpipeline1 armhf 1.5.7-1 [33.6 kB]
Get: 26 http://deb.debian.org/debian bookworm/main armhf man-db armhf 2.11.2-2 [1351 kB]
Get: 27 http://deb.debian.org/debian bookworm/main armhf m4 armhf 1.4.19-3 [265 kB]
Get: 28 http://deb.debian.org/debian bookworm/main armhf autoconf all 2.71-3 [332 kB]
Get: 29 http://deb.debian.org/debian bookworm/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get: 30 http://deb.debian.org/debian bookworm/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get: 31 http://deb.debian.org/debian bookworm/main armhf autopoint all 0.21-12 [495 kB]
Get: 32 http://deb.debian.org/debian bookworm/main armhf libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 33 http://deb.debian.org/debian bookworm/main armhf libtool all 2.4.7-5 [517 kB]
Get: 34 http://deb.debian.org/debian bookworm/main armhf dh-autoreconf all 20 [17.1 kB]
Get: 35 http://deb.debian.org/debian bookworm/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get: 36 http://deb.debian.org/debian bookworm/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get: 37 http://deb.debian.org/debian bookworm/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 38 http://deb.debian.org/debian bookworm/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 39 http://deb.debian.org/debian bookworm/main armhf libelf1 armhf 0.188-2.1 [170 kB]
Get: 40 http://deb.debian.org/debian bookworm/main armhf dwz armhf 0.15-1 [101 kB]
Get: 41 http://deb.debian.org/debian bookworm/main armhf libicu72 armhf 72.1-3 [9048 kB]
Get: 42 http://deb.debian.org/debian bookworm/main armhf libxml2 armhf 2.9.14+dfsg-1.2 [591 kB]
Get: 43 http://deb.debian.org/debian bookworm/main armhf gettext armhf 0.21-12 [1229 kB]
Get: 44 http://deb.debian.org/debian bookworm/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 45 http://deb.debian.org/debian bookworm/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get: 46 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB]
Get: 47 http://deb.debian.org/debian bookworm/main armhf python3-lib2to3 all 3.11.2-2 [76.2 kB]
Get: 48 http://deb.debian.org/debian bookworm/main armhf python3-distutils all 3.11.2-2 [131 kB]
Get: 49 http://deb.debian.org/debian bookworm/main armhf dh-python all 5.20230130 [104 kB]
Get: 50 http://deb.debian.org/debian bookworm/main armhf xml-core all 0.18+nmu1 [23.8 kB]
Get: 51 http://deb.debian.org/debian bookworm/main armhf docutils-common all 0.19+dfsg-6 [127 kB]
Get: 52 http://deb.debian.org/debian bookworm/main armhf libfontenc1 armhf 1:1.1.4-1 [21.9 kB]
Get: 53 http://deb.debian.org/debian bookworm/main armhf libbrotli1 armhf 1.0.9-2+b6 [271 kB]
Get: 54 http://deb.debian.org/debian bookworm/main armhf libpng16-16 armhf 1.6.39-2 [260 kB]
Get: 55 http://deb.debian.org/debian bookworm/main armhf libfreetype6 armhf 2.12.1+dfsg-5 [332 kB]
Get: 56 http://deb.debian.org/debian bookworm/main armhf x11-common all 1:7.7+23 [252 kB]
Get: 57 http://deb.debian.org/debian bookworm/main armhf xfonts-encodings all 1:1.0.4-2.2 [577 kB]
Get: 58 http://deb.debian.org/debian bookworm/main armhf xfonts-utils armhf 1:7.7+6 [84.5 kB]
Get: 59 http://deb.debian.org/debian bookworm/main armhf fonts-urw-base35 all 20200910-7 [10.8 MB]
Get: 60 http://deb.debian.org/debian bookworm/main armhf libaec0 armhf 1.0.6-1+b1 [19.8 kB]
Get: 61 http://deb.debian.org/debian bookworm/main armhf libblas3 armhf 3.11.0-2 [105 kB]
Get: 62 http://deb.debian.org/debian bookworm/main armhf libbsd0 armhf 0.11.7-2 [113 kB]
Get: 63 http://deb.debian.org/debian bookworm/main armhf libsasl2-modules-db armhf 2.1.28+dfsg-10 [19.0 kB]
Get: 64 http://deb.debian.org/debian bookworm/main armhf libsasl2-2 armhf 2.1.28+dfsg-10 [52.3 kB]
Get: 65 http://deb.debian.org/debian bookworm/main armhf libldap-2.5-0 armhf 2.5.13+dfsg-5 [158 kB]
Get: 66 http://deb.debian.org/debian bookworm/main armhf libnghttp2-14 armhf 1.52.0-1 [60.8 kB]
Get: 67 http://deb.debian.org/debian bookworm/main armhf libpsl5 armhf 0.21.2-1 [57.5 kB]
Get: 68 http://deb.debian.org/debian bookworm/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB]
Get: 69 http://deb.debian.org/debian bookworm/main armhf libssh2-1 armhf 1.10.0-3+b1 [163 kB]
Get: 70 http://deb.debian.org/debian bookworm/main armhf libcurl3-gnutls armhf 7.88.1-9 [343 kB]
Get: 71 http://deb.debian.org/debian bookworm/main armhf libcurl4 armhf 7.88.1-9 [347 kB]
Get: 72 http://deb.debian.org/debian bookworm/main armhf libdeflate0 armhf 1.14-1 [52.2 kB]
Get: 73 http://deb.debian.org/debian bookworm/main armhf libfribidi0 armhf 1.0.8-2.1 [63.1 kB]
Get: 74 http://deb.debian.org/debian bookworm/main armhf libgfortran5 armhf 12.2.0-14 [246 kB]
Get: 75 http://deb.debian.org/debian bookworm/main armhf libglib2.0-0 armhf 2.74.6-2 [1227 kB]
Get: 76 http://deb.debian.org/debian bookworm/main armhf libgraphite2-3 armhf 1.3.14-1 [70.5 kB]
Get: 77 http://deb.debian.org/debian bookworm/main armhf libharfbuzz0b armhf 6.0.0+dfsg-3 [1893 kB]
Get: 78 http://deb.debian.org/debian bookworm/main armhf libsz2 armhf 1.0.6-1+b1 [7864 B]
Get: 79 http://deb.debian.org/debian bookworm/main armhf libhdf5-103-1 armhf 1.10.8+repack1-1 [1183 kB]
Get: 80 http://deb.debian.org/debian bookworm/main armhf libhdf5-hl-100 armhf 1.10.8+repack1-1 [65.3 kB]
Get: 81 http://deb.debian.org/debian bookworm/main armhf libhtscodecs2 armhf 1.3.0-4 [60.4 kB]
Get: 82 http://deb.debian.org/debian bookworm/main armhf libhts3 armhf 1.16+ds-3 [375 kB]
Get: 83 http://deb.debian.org/debian bookworm/main armhf libimagequant0 armhf 2.17.0-1 [27.9 kB]
Get: 84 http://deb.debian.org/debian bookworm/main armhf libjbig0 armhf 2.1-6.1 [27.1 kB]
Get: 85 http://deb.debian.org/debian bookworm/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get: 86 http://deb.debian.org/debian bookworm/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 87 http://deb.debian.org/debian bookworm/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get: 88 http://deb.debian.org/debian bookworm/main armhf libjs-sphinxdoc all 5.3.0-4 [130 kB]
Get: 89 http://deb.debian.org/debian bookworm/main armhf liblapack3 armhf 3.11.0-2 [1724 kB]
Get: 90 http://deb.debian.org/debian bookworm/main armhf liblbfgsb0 armhf 3.0+dfsg.4-1 [25.0 kB]
Get: 91 http://deb.debian.org/debian bookworm/main armhf liblcms2-2 armhf 2.14-2 [125 kB]
Get: 92 http://deb.debian.org/debian bookworm/main armhf liblerc4 armhf 4.0.0+ds-2 [137 kB]
Get: 93 http://deb.debian.org/debian bookworm/main armhf liblzf1 armhf 3.6-3 [9248 B]
Get: 94 http://deb.debian.org/debian bookworm/main armhf libopenjp2-7 armhf 2.5.0-1+b1 [170 kB]
Get: 95 http://deb.debian.org/debian bookworm/main armhf libraqm0 armhf 0.7.0-4.1 [9116 B]
Get: 96 http://deb.debian.org/debian bookworm/main armhf libwebp7 armhf 1.2.4-0.1 [242 kB]
Get: 97 http://deb.debian.org/debian bookworm/main armhf libtiff6 armhf 4.5.0-5 [295 kB]
Get: 98 http://deb.debian.org/debian bookworm/main armhf libwebpdemux2 armhf 1.2.4-0.1 [98.2 kB]
Get: 99 http://deb.debian.org/debian bookworm/main armhf libwebpmux3 armhf 1.2.4-0.1 [105 kB]
Get: 100 http://deb.debian.org/debian bookworm/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB]
Get: 101 http://deb.debian.org/debian bookworm/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB]
Get: 102 http://deb.debian.org/debian bookworm/main armhf libxcb1 armhf 1.15-1 [140 kB]
Get: 103 http://deb.debian.org/debian bookworm/main armhf python3-attr all 22.2.0-1 [65.4 kB]
Get: 104 http://deb.debian.org/debian bookworm/main armhf python3-avro all 1.11.1+dfsg-2 [70.5 kB]
Get: 105 http://deb.debian.org/debian bookworm/main armhf python3-pkg-resources all 66.1.1-1 [296 kB]
Get: 106 http://deb.debian.org/debian bookworm/main armhf python3-numpy armhf 1:1.24.2-1 [4165 kB]
Get: 107 http://deb.debian.org/debian bookworm/main armhf python3-renderpm armhf 3.6.12-1+b1 [66.2 kB]
Get: 108 http://deb.debian.org/debian bookworm/main armhf python3-reportlab-accel armhf 3.6.12-1+b1 [37.3 kB]
Get: 109 http://deb.debian.org/debian bookworm/main armhf python3-pil armhf 9.4.0-1.1+b1 [438 kB]
Get: 110 http://deb.debian.org/debian bookworm/main armhf python3-reportlab all 3.6.12-1 [564 kB]
Get: 111 http://deb.debian.org/debian bookworm/main armhf w3c-sgml-lib all 1.3-3 [273 kB]
Get: 112 http://deb.debian.org/debian bookworm/main armhf python3-biopython armhf 1.80+dfsg-4+b1 [1568 kB]
Get: 113 http://deb.debian.org/debian bookworm/main armhf python3-certifi all 2022.9.24-1 [153 kB]
Get: 114 http://deb.debian.org/debian bookworm/main armhf python3-chardet all 5.1.0+dfsg-2 [110 kB]
Get: 115 http://deb.debian.org/debian bookworm/main armhf python3-charset-normalizer all 3.0.1-2 [49.3 kB]
Get: 116 http://deb.debian.org/debian bookworm/main armhf python3-decorator all 5.1.1-3 [14.9 kB]
Get: 117 http://deb.debian.org/debian bookworm/main armhf python3-roman all 3.3-3 [9880 B]
Get: 118 http://deb.debian.org/debian bookworm/main armhf python3-docutils all 0.19+dfsg-6 [382 kB]
Get: 119 http://deb.debian.org/debian bookworm/main armhf python3-execnet all 1.9.0-1 [41.5 kB]
Get: 120 http://deb.debian.org/debian bookworm/main armhf python3-h5py-serial armhf 3.7.0-8 [730 kB]
Get: 121 http://deb.debian.org/debian bookworm/main armhf python3-h5py all 3.7.0-8 [10.3 kB]
Get: 122 http://deb.debian.org/debian bookworm/main armhf python3-idna all 3.3-1 [39.4 kB]
Get: 123 http://deb.debian.org/debian bookworm/main armhf python3-iniconfig all 1.1.1-2 [6396 B]
Get: 124 http://deb.debian.org/debian bookworm/main armhf python3-iso8601 all 1.0.2-1 [15.7 kB]
Get: 125 http://deb.debian.org/debian bookworm/main armhf python3-more-itertools all 8.10.0-2 [53.0 kB]
Get: 126 http://deb.debian.org/debian bookworm/main armhf python3-packaging all 23.0-1 [32.5 kB]
Get: 127 http://deb.debian.org/debian bookworm/main armhf python3-six all 1.16.0-4 [17.5 kB]
Get: 128 http://deb.debian.org/debian bookworm/main armhf python3-urllib3 all 1.26.12-1 [117 kB]
Get: 129 http://deb.debian.org/debian bookworm/main armhf python3-requests all 2.28.1+dfsg-1 [67.9 kB]
Get: 130 http://deb.debian.org/debian bookworm/main armhf python3-tz all 2022.7.1-3 [30.1 kB]
Get: 131 http://deb.debian.org/debian bookworm/main armhf python3-pbcommand all 2.1.1+git20220616.3f2e6c2-2 [90.7 kB]
Get: 132 http://deb.debian.org/debian bookworm/main armhf python3-pysam armhf 0.20.0+ds-3+b1 [1484 kB]
Get: 133 http://deb.debian.org/debian bookworm/main armhf python3-pbcore all 2.1.2+dfsg-5 [2830 kB]
Get: 134 http://deb.debian.org/debian bookworm/main armhf python3-pluggy all 1.0.0+repack-1 [19.7 kB]
Get: 135 http://deb.debian.org/debian bookworm/main armhf python3-py all 1.11.0-1 [89.2 kB]
Get: 136 http://deb.debian.org/debian bookworm/main armhf python3-pytest all 7.2.1-2 [236 kB]
Get: 137 http://deb.debian.org/debian bookworm/main armhf python3-setuptools all 66.1.1-1 [521 kB]
Get: 138 http://deb.debian.org/debian bookworm/main armhf python3-pytest-runner all 2.11.1-4 [8432 B]
Get: 139 http://deb.debian.org/debian bookworm/main armhf python3-pytest-xdist all 3.1.0-1 [39.6 kB]
Get: 140 http://deb.debian.org/debian bookworm/main armhf python3-scipy armhf 1.10.1-2 [13.8 MB]
Get: 141 http://deb.debian.org/debian bookworm/main armhf python3-uritools all 4.0.0-1 [25.3 kB]
Fetched 77.1 MB in 8s (9697 kB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libpython3.11-minimal:armhf.
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Unpacking python3.11-minimal (3.11.2-6) ...
Setting up libpython3.11-minimal:armhf (3.11.2-6) ...
Setting up libexpat1:armhf (2.5.0-1) ...
Setting up python3.11-minimal (3.11.2-6) ...
Selecting previously unselected package python3-minimal.
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Unpacking python3-minimal (3.11.2-1+b1) ...
Selecting previously unselected package media-types.
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Unpacking media-types (10.0.0) ...
Selecting previously unselected package mailcap.
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Unpacking mailcap (3.70+nmu1) ...
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Unpacking mime-support (3.66) ...
Selecting previously unselected package readline-common.
Preparing to unpack .../4-readline-common_8.2-1.3_all.deb ...
Unpacking readline-common (8.2-1.3) ...
Selecting previously unselected package libreadline8:armhf.
Preparing to unpack .../5-libreadline8_8.2-1.3_armhf.deb ...
Unpacking libreadline8:armhf (8.2-1.3) ...
Selecting previously unselected package libpython3.11-stdlib:armhf.
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Unpacking libpython3.11-stdlib:armhf (3.11.2-6) ...
Selecting previously unselected package python3.11.
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Unpacking python3.11 (3.11.2-6) ...
Selecting previously unselected package libpython3-stdlib:armhf.
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Unpacking libpython3-stdlib:armhf (3.11.2-1+b1) ...
Setting up python3-minimal (3.11.2-1+b1) ...
Selecting previously unselected package python3.
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Preparing to unpack .../000-python3_3.11.2-1+b1_armhf.deb ...
Unpacking python3 (3.11.2-1+b1) ...
Selecting previously unselected package sgml-base.
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Unpacking sgml-base (1.31) ...
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Unpacking sensible-utils (0.0.17+nmu1) ...
Selecting previously unselected package openssl.
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Unpacking openssl (3.0.8-1) ...
Selecting previously unselected package ca-certificates.
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Unpacking ca-certificates (20230311) ...
Selecting previously unselected package libmagic-mgc.
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Unpacking libmagic-mgc (1:5.44-3) ...
Selecting previously unselected package libmagic1:armhf.
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Unpacking libmagic1:armhf (1:5.44-3) ...
Selecting previously unselected package file.
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Unpacking file (1:5.44-3) ...
Selecting previously unselected package gettext-base.
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Unpacking gettext-base (0.21-12) ...
Selecting previously unselected package libuchardet0:armhf.
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Unpacking libuchardet0:armhf (0.0.7-1) ...
Selecting previously unselected package groff-base.
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Unpacking groff-base (1.22.4-10) ...
Selecting previously unselected package bsdextrautils.
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Unpacking bsdextrautils (2.38.1-5+b1) ...
Selecting previously unselected package libpipeline1:armhf.
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Unpacking libpipeline1:armhf (1.5.7-1) ...
Selecting previously unselected package man-db.
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Unpacking man-db (2.11.2-2) ...
Selecting previously unselected package m4.
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Unpacking m4 (1.4.19-3) ...
Selecting previously unselected package autoconf.
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Unpacking autoconf (2.71-3) ...
Selecting previously unselected package autotools-dev.
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Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
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Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
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Selecting previously unselected package libdebhelper-perl.
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Selecting previously unselected package libfile-stripnondeterminism-perl.
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Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ...
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Unpacking libxml2:armhf (2.9.14+dfsg-1.2) ...
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Unpacking gettext (0.21-12) ...
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Unpacking intltool-debian (0.35.0+20060710.6) ...
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Unpacking debhelper (13.11.4) ...
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Unpacking python3-lib2to3 (3.11.2-2) ...
Selecting previously unselected package python3-distutils.
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Unpacking python3-distutils (3.11.2-2) ...
Selecting previously unselected package dh-python.
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Unpacking dh-python (5.20230130) ...
Selecting previously unselected package xml-core.
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Unpacking xml-core (0.18+nmu1) ...
Selecting previously unselected package docutils-common.
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Unpacking docutils-common (0.19+dfsg-6) ...
Selecting previously unselected package libfontenc1:armhf.
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Unpacking libfontenc1:armhf (1:1.1.4-1) ...
Selecting previously unselected package libbrotli1:armhf.
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Unpacking libbrotli1:armhf (1.0.9-2+b6) ...
Selecting previously unselected package libpng16-16:armhf.
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Unpacking libpng16-16:armhf (1.6.39-2) ...
Selecting previously unselected package libfreetype6:armhf.
Preparing to unpack .../042-libfreetype6_2.12.1+dfsg-5_armhf.deb ...
Unpacking libfreetype6:armhf (2.12.1+dfsg-5) ...
Selecting previously unselected package x11-common.
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Unpacking x11-common (1:7.7+23) ...
Selecting previously unselected package xfonts-encodings.
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Unpacking xfonts-encodings (1:1.0.4-2.2) ...
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Unpacking xfonts-utils (1:7.7+6) ...
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invoke-rc.d: could not determine current runlevel
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Setting up python3-roman (3.3-3) ...
Setting up python3-decorator (5.1.1-3) ...
Setting up python3-packaging (23.0-1) ...
Setting up python3-iso8601 (1.0.2-1) ...
Setting up python3-certifi (2022.9.24-1) ...
Setting up python3-avro (1.11.1+dfsg-2) ...
Setting up python3-reportlab-accel:armhf (3.6.12-1+b1) ...
Setting up python3-idna (3.3-1) ...
Setting up python3-urllib3 (1.26.12-1) ...
Setting up python3-pluggy (1.0.0+repack-1) ...
Setting up python3-reportlab (3.6.12-1) ...
Setting up python3-execnet (1.9.0-1) ...
Setting up python3-lib2to3 (3.11.2-2) ...
Setting up python3-uritools (4.0.0-1) ...
Setting up python3-pkg-resources (66.1.1-1) ...
Setting up python3-distutils (3.11.2-2) ...
Setting up dh-python (5.20230130) ...
Setting up python3-more-itertools (8.10.0-2) ...
Setting up python3-iniconfig (1.1.1-2) ...
Setting up python3-attr (22.2.0-1) ...
Setting up python3-pysam (0.20.0+ds-3+b1) ...
Setting up python3-renderpm:armhf (3.6.12-1+b1) ...
Setting up python3-setuptools (66.1.1-1) ...
Setting up python3-py (1.11.0-1) ...
Setting up python3-charset-normalizer (3.0.1-2) ...
Setting up python3-pytest (7.2.1-2) ...
Setting up python3-chardet (5.1.0+dfsg-2) ...
Setting up python3-requests (2.28.1+dfsg-1) ...
Setting up python3-numpy (1:1.24.2-1) ...
Setting up python3-pytest-runner (2.11.1-4) ...
Setting up python3-scipy (1.10.1-2) ...
Setting up python3-pytest-xdist (3.1.0-1) ...
Setting up python3-h5py-serial (3.7.0-8) ...
Setting up python3-h5py (3.7.0-8) ...
Setting up python3-pbcommand (2.1.1+git20220616.3f2e6c2-2) ...
Processing triggers for libc-bin (2.36-9) ...
Processing triggers for sgml-base (1.31) ...
Setting up docutils-common (0.19+dfsg-6) ...
Setting up w3c-sgml-lib (1.3-3) ...
Setting up python3-biopython (1.80+dfsg-4+b1) ...
Setting up python3-pbcore (2.1.2+dfsg-5) ...
Processing triggers for sgml-base (1.31) ...
Setting up python3-docutils (0.19+dfsg-6) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
usrmerge is already the newest version (35).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: user script /srv/workspace/pbuilder/7646/tmp/hooks/A99_set_merged_usr starting
Re-configuring usrmerge...
removed '/etc/unsupported-skip-usrmerge-conversion'
The system has been successfully converted.
I: user script /srv/workspace/pbuilder/7646/tmp/hooks/A99_set_merged_usr finished
hostname: Name or service not known
I: Running cd /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../kineticstools_0.6.1+git20220223.1326a4d+dfsg-2_source.changes
dpkg-buildpackage: info: source package kineticstools
dpkg-buildpackage: info: source version 0.6.1+git20220223.1326a4d+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Nilesh Patra <nilesh@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: ingresso nella directory «/build/kineticstools-0.6.1+git20220223.1326a4d+dfsg»
dh_auto_clean
I: pybuild base:240: python3.11 setup.py clean
running clean
removing '/build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.11' does not exist -- can't clean it
rm -rf .pytest_cache
rm -rf kineticsTools.egg-info
rm -f nosetests.xml
rm -f bin/ipdSummary
make[1]: uscita dalla directory «/build/kineticstools-0.6.1+git20220223.1326a4d+dfsg»
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --with python3 --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:240: python3.11 setup.py config
running config
dh_auto_build -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py build
running build
running build_py
creating /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/pipelineTools.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/WorkerProcess.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/MedakaLdaEnricher.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/ReferenceUtils.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/BasicLdaEnricher.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/PositiveControlEnricher.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/__init__.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/ipdModel.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/sharedArray.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/ModificationDecode.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/MultiSiteCommon.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/KineticWorker.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/summarizeModifications.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/MultiSiteDetection.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/MixtureEstimationMethods.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/loader.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/ipdSummary.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
copying kineticsTools/ResultWriter.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools
creating /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/internal
copying kineticsTools/internal/__init__.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/internal
creating /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tasks
copying kineticsTools/tasks/gather_bigwig.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tasks
copying kineticsTools/tasks/__init__.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tasks
running egg_info
creating kineticsTools.egg-info
writing kineticsTools.egg-info/PKG-INFO
writing dependency_links to kineticsTools.egg-info/dependency_links.txt
writing entry points to kineticsTools.egg-info/entry_points.txt
writing requirements to kineticsTools.egg-info/requires.txt
writing top-level names to kineticsTools.egg-info/top_level.txt
writing manifest file 'kineticsTools.egg-info/SOURCES.txt'
reading manifest file 'kineticsTools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSES.txt'
writing manifest file 'kineticsTools.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'kineticsTools.resources' as data is deprecated, please list it in `packages`.
!!
############################
# Package would be ignored #
############################
Python recognizes 'kineticsTools.resources' as an importable package,
but it is not listed in the `packages` configuration of setuptools.
'kineticsTools.resources' has been automatically added to the distribution only
because it may contain data files, but this behavior is likely to change
in future versions of setuptools (and therefore is considered deprecated).
Please make sure that 'kineticsTools.resources' is included as a package by using
the `packages` configuration field or the proper discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" and "data files" on setuptools
documentation page.
!!
check.warn(importable)
creating /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/P6-C4.npz.gz -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/SP2-C2.npz.gz -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/SP3-C3.npz.gz -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/unknown.npz.gz -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources
running build_ext
building 'kineticsTools/tree_predict' extension
creating build
creating build/temp.linux-armhf-cpython-311
creating build/temp.linux-armhf-cpython-311/kineticsTools
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/kineticstools-0.6.1+git20220223.1326a4d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c kineticsTools/tree_predict.c -o build/temp.linux-armhf-cpython-311/kineticsTools/tree_predict.o -O3 -shared -std=c99
arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/kineticstools-0.6.1+git20220223.1326a4d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-311/kineticsTools/tree_predict.o -L/usr/lib/arm-linux-gnueabihf -o /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tree_predict.cpython-311-arm-linux-gnueabihf.so
debian/rules override_dh_auto_test
make[1]: ingresso nella directory «/build/kineticstools-0.6.1+git20220223.1326a4d+dfsg»
cp kineticsTools/ipdSummary.py bin/ipdSummary
chmod +x bin/ipdSummary
PYTHONPATH=/build/kineticstools-0.6.1+git20220223.1326a4d+dfsg PATH=$PATH:/build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/bin dh_auto_test
I: pybuild base:240: cd /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build; python3.11 -m pytest test
============================= test session starts ==============================
platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack -- /usr/bin/python3.11
cachedir: .pytest_cache
rootdir: /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg, configfile: pytest.ini
plugins: xdist-3.1.0
gw0 I / gw1 I / gw2 I / gw3 I
[gw0] linux Python 3.11.2 cwd: /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build
[gw1] linux Python 3.11.2 cwd: /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build
[gw2] linux Python 3.11.2 cwd: /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build
[gw3] linux Python 3.11.2 cwd: /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build
[gw0] Python 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0]
[gw1] Python 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0]
[gw2] Python 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0]
[gw3] Python 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0]
gw0 [19] / gw1 [19] / gw2 [19] / gw3 [19]
scheduling tests via LoadScopeScheduling
test/test_ReferenceUtils.py::TestReferenceUtils::test_bam
test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig
test/test_integration.py::TestKineticsTools::test_help
test/test_ipdModel.py::TestIpdModel::test_refLength
[gw3] [ 5%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_refLength
[gw0] [ 10%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_bam
test/test_ipdModel.py::TestIpdModel::test_snippetFunc
test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset
[gw0] [ 15%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset
[gw3] [ 21%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_snippetFunc
[gw1] [ 26%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig
test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli
[gw1] [ 31%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli
test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow
[gw0] [ 36%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow
test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows
test/test_loader.py::test_basic
[gw1] [ 42%] PASSED test/test_loader.py::test_basic
test/test_loader.py::test_path
[gw1] [ 47%] PASSED test/test_loader.py::test_path
test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow
[gw3] [ 52%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow
[gw0] [ 57%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows
test/test_loader.py::test_path_with_prefixed_chem
test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks
[gw0] [ 63%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks
test/test_summarize_modifications.py::TestSummarizeModifications::test_integration
[gw1] [ 68%] PASSED test/test_loader.py::test_path_with_prefixed_chem
test/test_loader.py::test_getResourcePathSpec
[gw1] [ 73%] PASSED test/test_loader.py::test_getResourcePathSpec
[gw3] [ 78%] SKIPPED test/test_summarize_modifications.py::TestSummarizeModifications::test_integration
[gw2] [ 84%] PASSED test/test_integration.py::TestKineticsTools::test_help
test/test_integration.py::TestKineticsTools::test_ecoli_first_50k
[gw2] [ 89%] SKIPPED test/test_integration.py::TestKineticsTools::test_ecoli_first_50k
test/test_outputs.py::TestOutputs::test_csv_output
[gw2] [ 94%] SKIPPED test/test_outputs.py::TestOutputs::test_csv_output
test/test_outputs.py::TestOutputs::test_bigwig
[gw2] [100%] SKIPPED test/test_outputs.py::TestOutputs::test_bigwig
- generated xml file: /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/nosetests.xml -
============================= slowest 20 durations =============================
9.50s call .pybuild/cpython3_3.11_kineticstools/build/test/test_integration.py::TestKineticsTools::test_help
0.02s setup .pybuild/cpython3_3.11_kineticstools/build/test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli
0.01s call .pybuild/cpython3_3.11_kineticstools/build/test/test_loader.py::test_basic
0.01s teardown .pybuild/cpython3_3.11_kineticstools/build/test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks
0.01s setup .pybuild/cpython3_3.11_kineticstools/build/test/test_integration.py::TestKineticsTools::test_ecoli_first_50k
0.01s call .pybuild/cpython3_3.11_kineticstools/build/test/test_loader.py::test_path
0.01s teardown .pybuild/cpython3_3.11_kineticstools/build/test/test_integration.py::TestKineticsTools::test_ecoli_first_50k
(13 durations < 0.005s hidden. Use -vv to show these durations.)
======================== 5 passed, 14 skipped in 21.66s ========================
make[1]: uscita dalla directory «/build/kineticstools-0.6.1+git20220223.1326a4d+dfsg»
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
debian/rules override_dh_auto_install
make[1]: ingresso nella directory «/build/kineticstools-0.6.1+git20220223.1326a4d+dfsg»
dh_auto_install
I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
running egg_info
writing kineticsTools.egg-info/PKG-INFO
writing dependency_links to kineticsTools.egg-info/dependency_links.txt
writing entry points to kineticsTools.egg-info/entry_points.txt
writing requirements to kineticsTools.egg-info/requires.txt
writing top-level names to kineticsTools.egg-info/top_level.txt
reading manifest file 'kineticsTools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSES.txt'
writing manifest file 'kineticsTools.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'kineticsTools.resources' as data is deprecated, please list it in `packages`.
!!
############################
# Package would be ignored #
############################
Python recognizes 'kineticsTools.resources' as an importable package,
but it is not listed in the `packages` configuration of setuptools.
'kineticsTools.resources' has been automatically added to the distribution only
because it may contain data files, but this behavior is likely to change
in future versions of setuptools (and therefore is considered deprecated).
Please make sure that 'kineticsTools.resources' is included as a package by using
the `packages` configuration field or the proper discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" and "data files" on setuptools
documentation page.
!!
check.warn(importable)
running build_ext
running install_lib
creating /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools
creating /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr
creating /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib
creating /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11
creating /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/nosetests.xml -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages
creating /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/pipelineTools.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
creating /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/internal
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/internal/__init__.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/internal
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/WorkerProcess.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/MedakaLdaEnricher.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/ReferenceUtils.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/BasicLdaEnricher.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/PositiveControlEnricher.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/__init__.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tree_predict.cpython-311-arm-linux-gnueabihf.so -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
creating /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/resources
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources/SP2-C2.npz.gz -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/resources
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources/unknown.npz.gz -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/resources
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources/SP3-C3.npz.gz -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/resources
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/resources/P6-C4.npz.gz -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/resources
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/ipdModel.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/sharedArray.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/ModificationDecode.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/MultiSiteCommon.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
creating /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tasks/gather_bigwig.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tasks/__init__.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks
creating /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks/__pycache__
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tasks/__pycache__/gather_bigwig.cpython-311.pyc -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks/__pycache__
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/tasks/__pycache__/__init__.cpython-311.pyc -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks/__pycache__
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/KineticWorker.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/summarizeModifications.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/MultiSiteDetection.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/MixtureEstimationMethods.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/loader.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/ipdSummary.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
creating /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/__pycache__
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/__pycache__/sharedArray.cpython-311.pyc -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/__pycache__
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/__pycache__/__init__.cpython-311.pyc -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/__pycache__
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/__pycache__/loader.cpython-311.pyc -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/__pycache__
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/__pycache__/ReferenceUtils.cpython-311.pyc -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/__pycache__
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/__pycache__/ipdModel.cpython-311.pyc -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/__pycache__
copying /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/.pybuild/cpython3_3.11_kineticstools/build/kineticsTools/ResultWriter.py -> /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools
byte-compiling /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/pipelineTools.py to pipelineTools.cpython-311.pyc
byte-compiling /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/internal/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/WorkerProcess.py to WorkerProcess.cpython-311.pyc
byte-compiling /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/MedakaLdaEnricher.py to MedakaLdaEnricher.cpython-311.pyc
byte-compiling /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/ReferenceUtils.py to ReferenceUtils.cpython-311.pyc
byte-compiling /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/BasicLdaEnricher.py to BasicLdaEnricher.cpython-311.pyc
byte-compiling /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/PositiveControlEnricher.py to PositiveControlEnricher.cpython-311.pyc
byte-compiling /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/ipdModel.py to ipdModel.cpython-311.pyc
byte-compiling /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/sharedArray.py to sharedArray.cpython-311.pyc
byte-compiling /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/ModificationDecode.py to ModificationDecode.cpython-311.pyc
byte-compiling /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/MultiSiteCommon.py to MultiSiteCommon.cpython-311.pyc
byte-compiling /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks/gather_bigwig.py to gather_bigwig.cpython-311.pyc
byte-compiling /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/tasks/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/KineticWorker.py to KineticWorker.cpython-311.pyc
byte-compiling /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/summarizeModifications.py to summarizeModifications.cpython-311.pyc
byte-compiling /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/MultiSiteDetection.py to MultiSiteDetection.cpython-311.pyc
byte-compiling /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/MixtureEstimationMethods.py to MixtureEstimationMethods.cpython-311.pyc
byte-compiling /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/loader.py to loader.cpython-311.pyc
byte-compiling /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/ipdSummary.py to ipdSummary.cpython-311.pyc
byte-compiling /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools/ResultWriter.py to ResultWriter.cpython-311.pyc
running install_egg_info
Copying kineticsTools.egg-info to /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/lib/python3.11/dist-packages/kineticsTools-0.8.0.egg-info
Skipping SOURCES.txt
running install_scripts
Installing ipdSummary script to /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/bin
Installing summarizeModifications script to /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/python3-kineticstools/usr/bin
mkdir -p /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools/usr/bin
mv debian/python3-kineticstools/usr/bin/* /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools/usr/bin
mkdir -p /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools/usr/share/man//man1
rst2man doc/manual.rst > /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools/usr/share/man//man1/ipdSummary.1
doc/manual.rst:53: (WARNING/2) "math" role not supported
doc/manual.rst:55: (WARNING/2) "math" role not supported
doc/manual.rst:55: (WARNING/2) "math" role not supported
mkdir -p debian/kineticstools-data/usr/share/kineticstools
# There is probably a simpler way, but that should do for the moment.
set -e \
; for libdir in debian/python3-kineticstools/usr/lib/python3.* \
; do rm -rf /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools-data/usr/share/kineticstools/resources \
; mv ${libdir}/dist-packages/kineticsTools/resources /build/kineticstools-0.6.1+git20220223.1326a4d+dfsg/debian/kineticstools-data/usr/share/kineticstools/resources \
; done
rm debian/python3-kineticstools/usr/lib/python3.*/dist-packages/nosetests.xml
make[1]: uscita dalla directory «/build/kineticstools-0.6.1+git20220223.1326a4d+dfsg»
dh_installdocs -O--buildsystem=pybuild
dh_installchangelogs -O--buildsystem=pybuild
dh_installexamples -O--buildsystem=pybuild
dh_installman -O--buildsystem=pybuild
dh_python3 -O--buildsystem=pybuild
dh_installsystemduser -O--buildsystem=pybuild
dh_perl -O--buildsystem=pybuild
dh_link -O--buildsystem=pybuild
dh_strip_nondeterminism -O--buildsystem=pybuild
dh_compress -O--buildsystem=pybuild
dh_fixperms -O--buildsystem=pybuild
dh_missing -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -O--buildsystem=pybuild
dh_gencontrol -O--buildsystem=pybuild
dpkg-gencontrol: warning: Depends field of package python3-kineticstools: substitution variable ${shlibs:Depends} used, but is not defined
dpkg-gencontrol: warning: Depends field of package python3-kineticstools: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums -O--buildsystem=pybuild
dh_builddeb -O--buildsystem=pybuild
dpkg-deb: generazione del pacchetto "python3-kineticstools-dbgsym" in "../python3-kineticstools-dbgsym_0.6.1+git20220223.1326a4d+dfsg-2_armhf.deb".
dpkg-deb: generazione del pacchetto "kineticstools" in "../kineticstools_0.6.1+git20220223.1326a4d+dfsg-2_all.deb".
dpkg-deb: generazione del pacchetto "python3-kineticstools" in "../python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-2_armhf.deb".
dpkg-deb: generazione del pacchetto "kineticstools-data" in "../kineticstools-data_0.6.1+git20220223.1326a4d+dfsg-2_all.deb".
dpkg-genbuildinfo --build=binary -O../kineticstools_0.6.1+git20220223.1326a4d+dfsg-2_armhf.buildinfo
dpkg-genchanges --build=binary -O../kineticstools_0.6.1+git20220223.1326a4d+dfsg-2_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/7646/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/7646/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/7646 and its subdirectories
I: Current time: Sun May 7 14:33:02 +14 2023
I: pbuilder-time-stamp: 1683419582