I: pbuilder: network access will be disabled during build
I: Current time: Thu May 25 20:38:57 +14 2023
I: pbuilder-time-stamp: 1684996737
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [libwfa2_2.3.3-1.dsc]
I: copying [./libwfa2_2.3.3.orig.tar.gz]
I: copying [./libwfa2_2.3.3-1.debian.tar.xz]
I: Extracting source
gpgv: Signature made Mon Feb 27 06:34:11 2023 +14
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./libwfa2_2.3.3-1.dsc: no acceptable signature found
dpkg-source: info: extracting libwfa2 in libwfa2-2.3.3
dpkg-source: info: unpacking libwfa2_2.3.3.orig.tar.gz
dpkg-source: info: unpacking libwfa2_2.3.3-1.debian.tar.xz
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/19998/tmp/hooks/D01_modify_environment starting
debug: Running on cbxi4b.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 May 25 20:41 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/19998/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/19998/tmp/hooks/D02_print_environment starting
I: set
BASH=/bin/sh
BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
BASH_ALIASES=()
BASH_ARGC=()
BASH_ARGV=()
BASH_CMDS=()
BASH_LINENO=([0]="12" [1]="0")
BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf")
BASH_VERSION='5.2.15(1)-release'
BUILDDIR=/build
BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
BUILDUSERNAME=pbuilder2
BUILD_ARCH=armhf
DEBIAN_FRONTEND=noninteractive
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 '
DIRSTACK=()
DISTRIBUTION=bookworm
EUID=0
FUNCNAME=([0]="Echo" [1]="main")
GROUPS=()
HOME=/root
HOSTNAME=i-capture-the-hostname
HOSTTYPE=arm
HOST_ARCH=armhf
IFS='
'
INVOCATION_ID=272e36237a9d482e9c16a0a9cf6f101a
LANG=C
LANGUAGE=it_CH:it
LC_ALL=C
MACHTYPE=arm-unknown-linux-gnueabihf
MAIL=/var/mail/root
OPTERR=1
OPTIND=1
OSTYPE=linux-gnueabihf
PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
PBCURRENTCOMMANDLINEOPERATION=build
PBUILDER_OPERATION=build
PBUILDER_PKGDATADIR=/usr/share/pbuilder
PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
PBUILDER_SYSCONFDIR=/etc
PIPESTATUS=([0]="0")
POSIXLY_CORRECT=y
PPID=19998
PS4='+ '
PWD=/
SHELL=/bin/bash
SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
SHLVL=3
SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.uK1Al0Ve/pbuilderrc_AaQu --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.uK1Al0Ve/b2 --logfile b2/build.log --extrapackages usrmerge libwfa2_2.3.3-1.dsc'
SUDO_GID=116
SUDO_UID=112
SUDO_USER=jenkins
TERM=unknown
TZ=/usr/share/zoneinfo/Etc/GMT-14
UID=0
USER=root
_='I: set'
http_proxy=http://10.0.0.15:3142/
I: uname -a
Linux i-capture-the-hostname 5.10.0-23-armmp #1 SMP Debian 5.10.179-1 (2023-05-12) armv7l GNU/Linux
I: ls -l /bin
total 5072
-rwxr-xr-x 1 root root 838488 Apr 24 11:24 bash
-rwxr-xr-x 3 root root 67144 Sep 19 2022 bunzip2
-rwxr-xr-x 3 root root 67144 Sep 19 2022 bzcat
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep
-rwxr-xr-x 3 root root 67144 Sep 19 2022 bzip2
-rwxr-xr-x 1 root root 67112 Sep 19 2022 bzip2recover
lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore
-rwxr-xr-x 1 root root 67632 Sep 21 2022 cat
-rwxr-xr-x 1 root root 67676 Sep 21 2022 chgrp
-rwxr-xr-x 1 root root 67644 Sep 21 2022 chmod
-rwxr-xr-x 1 root root 67684 Sep 21 2022 chown
-rwxr-xr-x 1 root root 133532 Sep 21 2022 cp
-rwxr-xr-x 1 root root 132868 Jan 6 03:20 dash
-rwxr-xr-x 1 root root 133220 Sep 21 2022 date
-rwxr-xr-x 1 root root 67732 Sep 21 2022 dd
-rwxr-xr-x 1 root root 68104 Sep 21 2022 df
-rwxr-xr-x 1 root root 133632 Sep 21 2022 dir
-rwxr-xr-x 1 root root 59128 Mar 23 23:02 dmesg
lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname
-rwxr-xr-x 1 root root 67560 Sep 21 2022 echo
-rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep
-rwxr-xr-x 1 root root 67548 Sep 21 2022 false
-rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep
-rwxr-xr-x 1 root root 55748 Mar 23 23:02 findmnt
-rwsr-xr-x 1 root root 26208 Mar 23 22:15 fusermount
-rwxr-xr-x 1 root root 128608 Jan 25 04:43 grep
-rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip
-rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe
-rwxr-xr-x 1 root root 64220 Apr 10 2022 gzip
-rwxr-xr-x 1 root root 67032 Dec 20 03:33 hostname
-rwxr-xr-x 1 root root 67720 Sep 21 2022 ln
-rwxr-xr-x 1 root root 35132 Mar 23 23:51 login
-rwxr-xr-x 1 root root 133632 Sep 21 2022 ls
-rwxr-xr-x 1 root root 136808 Mar 23 23:02 lsblk
-rwxr-xr-x 1 root root 67800 Sep 21 2022 mkdir
-rwxr-xr-x 1 root root 67764 Sep 21 2022 mknod
-rwxr-xr-x 1 root root 67596 Sep 21 2022 mktemp
-rwxr-xr-x 1 root root 38504 Mar 23 23:02 more
-rwsr-xr-x 1 root root 38496 Mar 23 23:02 mount
-rwxr-xr-x 1 root root 9824 Mar 23 23:02 mountpoint
-rwxr-xr-x 1 root root 133532 Sep 21 2022 mv
lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 67608 Sep 21 2022 pwd
lrwxrwxrwx 1 root root 4 Apr 24 11:24 rbash -> bash
-rwxr-xr-x 1 root root 67600 Sep 21 2022 readlink
-rwxr-xr-x 1 root root 67672 Sep 21 2022 rm
-rwxr-xr-x 1 root root 67600 Sep 21 2022 rmdir
-rwxr-xr-x 1 root root 67400 Nov 3 2022 run-parts
-rwxr-xr-x 1 root root 133372 Jan 6 09:55 sed
lrwxrwxrwx 1 root root 9 May 25 20:41 sh -> /bin/bash
-rwxr-xr-x 1 root root 67584 Sep 21 2022 sleep
-rwxr-xr-x 1 root root 67644 Sep 21 2022 stty
-rwsr-xr-x 1 root root 50800 Mar 23 23:02 su
-rwxr-xr-x 1 root root 67584 Sep 21 2022 sync
-rwxr-xr-x 1 root root 336764 Apr 7 04:25 tar
-rwxr-xr-x 1 root root 67144 Nov 3 2022 tempfile
-rwxr-xr-x 1 root root 133224 Sep 21 2022 touch
-rwxr-xr-x 1 root root 67548 Sep 21 2022 true
-rwxr-xr-x 1 root root 9768 Mar 23 22:15 ulockmgr_server
-rwsr-xr-x 1 root root 22108 Mar 23 23:02 umount
-rwxr-xr-x 1 root root 67572 Sep 21 2022 uname
-rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress
-rwxr-xr-x 1 root root 133632 Sep 21 2022 vdir
-rwxr-xr-x 1 root root 42608 Mar 23 23:02 wdctl
lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat
-rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp
-rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff
-rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep
-rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep
-rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce
-rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep
-rwxr-xr-x 1 root root 2206 Apr 10 2022 zless
-rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore
-rwxr-xr-x 1 root root 4577 Apr 10 2022 znew
I: user script /srv/workspace/pbuilder/19998/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), d-shlibs, cmake, pkg-config
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19326 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on d-shlibs; however:
Package d-shlibs is not installed.
pbuilder-satisfydepends-dummy depends on cmake; however:
Package cmake is not installed.
pbuilder-satisfydepends-dummy depends on pkg-config; however:
Package pkg-config is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libcurl4{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libjsoncpp25{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget
0 packages upgraded, 53 newly installed, 0 to remove and 0 not upgraded.
Need to get 27.1 MB of archives. After unpacking 103 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main armhf libproc2-0 armhf 2:4.0.2-3 [54.2 kB]
Get: 2 http://deb.debian.org/debian bookworm/main armhf procps armhf 2:4.0.2-3 [695 kB]
Get: 3 http://deb.debian.org/debian bookworm/main armhf sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 4 http://deb.debian.org/debian bookworm/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB]
Get: 5 http://deb.debian.org/debian bookworm/main armhf libmagic1 armhf 1:5.44-3 [96.5 kB]
Get: 6 http://deb.debian.org/debian bookworm/main armhf file armhf 1:5.44-3 [41.6 kB]
Get: 7 http://deb.debian.org/debian bookworm/main armhf gettext-base armhf 0.21-12 [157 kB]
Get: 8 http://deb.debian.org/debian bookworm/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get: 9 http://deb.debian.org/debian bookworm/main armhf groff-base armhf 1.22.4-10 [825 kB]
Get: 10 http://deb.debian.org/debian bookworm/main armhf bsdextrautils armhf 2.38.1-5+b1 [78.6 kB]
Get: 11 http://deb.debian.org/debian bookworm/main armhf libpipeline1 armhf 1.5.7-1 [33.6 kB]
Get: 12 http://deb.debian.org/debian bookworm/main armhf man-db armhf 2.11.2-2 [1351 kB]
Get: 13 http://deb.debian.org/debian bookworm/main armhf m4 armhf 1.4.19-3 [265 kB]
Get: 14 http://deb.debian.org/debian bookworm/main armhf autoconf all 2.71-3 [332 kB]
Get: 15 http://deb.debian.org/debian bookworm/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get: 16 http://deb.debian.org/debian bookworm/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get: 17 http://deb.debian.org/debian bookworm/main armhf autopoint all 0.21-12 [495 kB]
Get: 18 http://deb.debian.org/debian bookworm/main armhf libicu72 armhf 72.1-3 [9048 kB]
Get: 19 http://deb.debian.org/debian bookworm/main armhf libxml2 armhf 2.9.14+dfsg-1.2 [591 kB]
Get: 20 http://deb.debian.org/debian bookworm/main armhf libarchive13 armhf 3.6.2-1 [299 kB]
Get: 21 http://deb.debian.org/debian bookworm/main armhf libbrotli1 armhf 1.0.9-2+b6 [271 kB]
Get: 22 http://deb.debian.org/debian bookworm/main armhf libsasl2-modules-db armhf 2.1.28+dfsg-10 [19.0 kB]
Get: 23 http://deb.debian.org/debian bookworm/main armhf libsasl2-2 armhf 2.1.28+dfsg-10 [52.3 kB]
Get: 24 http://deb.debian.org/debian bookworm/main armhf libldap-2.5-0 armhf 2.5.13+dfsg-5 [158 kB]
Get: 25 http://deb.debian.org/debian bookworm/main armhf libnghttp2-14 armhf 1.52.0-1 [60.8 kB]
Get: 26 http://deb.debian.org/debian bookworm/main armhf libpsl5 armhf 0.21.2-1 [57.5 kB]
Get: 27 http://deb.debian.org/debian bookworm/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB]
Get: 28 http://deb.debian.org/debian bookworm/main armhf libssh2-1 armhf 1.10.0-3+b1 [163 kB]
Get: 29 http://deb.debian.org/debian bookworm/main armhf libcurl4 armhf 7.88.1-9 [347 kB]
Get: 30 http://deb.debian.org/debian bookworm/main armhf libexpat1 armhf 2.5.0-1 [79.9 kB]
Get: 31 http://deb.debian.org/debian bookworm/main armhf libjsoncpp25 armhf 1.9.5-4 [68.6 kB]
Get: 32 http://deb.debian.org/debian bookworm/main armhf librhash0 armhf 1.4.3-3 [146 kB]
Get: 33 http://deb.debian.org/debian bookworm/main armhf libuv1 armhf 1.44.2-1 [126 kB]
Get: 34 http://deb.debian.org/debian bookworm/main armhf cmake-data all 3.25.1-1 [2026 kB]
Get: 35 http://deb.debian.org/debian bookworm/main armhf cmake armhf 3.25.1-1 [4263 kB]
Get: 36 http://deb.debian.org/debian bookworm/main armhf d-shlibs all 0.104 [18.6 kB]
Get: 37 http://deb.debian.org/debian bookworm/main armhf libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 38 http://deb.debian.org/debian bookworm/main armhf libtool all 2.4.7-5 [517 kB]
Get: 39 http://deb.debian.org/debian bookworm/main armhf dh-autoreconf all 20 [17.1 kB]
Get: 40 http://deb.debian.org/debian bookworm/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get: 41 http://deb.debian.org/debian bookworm/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get: 42 http://deb.debian.org/debian bookworm/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 43 http://deb.debian.org/debian bookworm/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 44 http://deb.debian.org/debian bookworm/main armhf libelf1 armhf 0.188-2.1 [170 kB]
Get: 45 http://deb.debian.org/debian bookworm/main armhf dwz armhf 0.15-1 [101 kB]
Get: 46 http://deb.debian.org/debian bookworm/main armhf gettext armhf 0.21-12 [1229 kB]
Get: 47 http://deb.debian.org/debian bookworm/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 48 http://deb.debian.org/debian bookworm/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get: 49 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB]
Get: 50 http://deb.debian.org/debian bookworm/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB]
Get: 51 http://deb.debian.org/debian bookworm/main armhf pkgconf-bin armhf 1.8.1-1 [28.5 kB]
Get: 52 http://deb.debian.org/debian bookworm/main armhf pkgconf armhf 1.8.1-1 [25.9 kB]
Get: 53 http://deb.debian.org/debian bookworm/main armhf pkg-config armhf 1.8.1-1 [13.7 kB]
Fetched 27.1 MB in 7s (3723 kB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libproc2-0:armhf.
(Reading database ...
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(Reading database ... 19326 files and directories currently installed.)
Preparing to unpack .../00-libproc2-0_2%3a4.0.2-3_armhf.deb ...
Unpacking libproc2-0:armhf (2:4.0.2-3) ...
Selecting previously unselected package procps.
Preparing to unpack .../01-procps_2%3a4.0.2-3_armhf.deb ...
Unpacking procps (2:4.0.2-3) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../02-sensible-utils_0.0.17+nmu1_all.deb ...
Unpacking sensible-utils (0.0.17+nmu1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../03-libmagic-mgc_1%3a5.44-3_armhf.deb ...
Unpacking libmagic-mgc (1:5.44-3) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../04-libmagic1_1%3a5.44-3_armhf.deb ...
Unpacking libmagic1:armhf (1:5.44-3) ...
Selecting previously unselected package file.
Preparing to unpack .../05-file_1%3a5.44-3_armhf.deb ...
Unpacking file (1:5.44-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../06-gettext-base_0.21-12_armhf.deb ...
Unpacking gettext-base (0.21-12) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../07-libuchardet0_0.0.7-1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../08-groff-base_1.22.4-10_armhf.deb ...
Unpacking groff-base (1.22.4-10) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../09-bsdextrautils_2.38.1-5+b1_armhf.deb ...
Unpacking bsdextrautils (2.38.1-5+b1) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../10-libpipeline1_1.5.7-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.7-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../11-man-db_2.11.2-2_armhf.deb ...
Unpacking man-db (2.11.2-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../12-m4_1.4.19-3_armhf.deb ...
Unpacking m4 (1.4.19-3) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../13-autoconf_2.71-3_all.deb ...
Unpacking autoconf (2.71-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../16-autopoint_0.21-12_all.deb ...
Unpacking autopoint (0.21-12) ...
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I: Building the package
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I: Running cd /build/libwfa2-2.3.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libwfa2_2.3.3-1_source.changes
dpkg-buildpackage: info: source package libwfa2
dpkg-buildpackage: info: source version 2.3.3-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
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dh clean --buildsystem=cmake
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dh_update_autotools_config -O--buildsystem=cmake
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cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf ..
-- The C compiler identification is GNU 12.2.0
-- The CXX compiler identification is GNU 12.2.0
-- Detecting C compiler ABI info
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-- Found Threads: TRUE
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[ 1%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_attributes.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_attributes.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_attributes.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_attributes.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_attributes.c
[ 2%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_align.c.o
[ 3%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_align.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_align.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_align.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_align.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_align.c
[ 4%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_aligner.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_align.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_align.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_align.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_align.c
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_aligner.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_aligner.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_aligner.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_aligner.c
[ 5%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_buffer.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_buffer.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_buffer.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_buffer.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_backtrace_buffer.c
[ 7%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_backtrace.c
[ 8%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_aligner.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_aligner.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_aligner.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_aligner.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_aligner.c
/build/libwfa2-2.3.3/wavefront/wavefront_backtrace_buffer.c: In function ‘wf_backtrace_buffer_compact_marked’:
/build/libwfa2-2.3.3/wavefront/wavefront_backtrace_buffer.c:522:61: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘bt_block_idx_t’ {aka ‘unsigned int’} [-Wformat=]
522 | fprintf(stderr,"[WFA::BacktraceBuffer] Compacted from %lu MB to %lu MB (%2.2f%%)",
| ~~^
| |
| long unsigned int
| %u
/build/libwfa2-2.3.3/wavefront/wavefront_backtrace_buffer.c:522:71: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘bt_block_idx_t’ {aka ‘unsigned int’} [-Wformat=]
522 | fprintf(stderr,"[WFA::BacktraceBuffer] Compacted from %lu MB to %lu MB (%2.2f%%)",
| ~~^
| |
| long unsigned int
| %u
[ 9%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_offload.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_offload.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_offload.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_offload.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_backtrace_offload.c
[ 10%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_attributes.c.o
[ 11%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_bialign.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_attributes.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_attributes.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_attributes.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_attributes.c
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_bialign.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_bialign.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_bialign.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_bialign.c
[ 13%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_bialigner.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_bialigner.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_bialigner.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_bialigner.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_bialigner.c
[ 14%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace_buffer.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace_buffer.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace_buffer.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace_buffer.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_backtrace_buffer.c
[ 15%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront.c
[ 16%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_components.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_components.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_components.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_components.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_components.c
/build/libwfa2-2.3.3/wavefront/wavefront_backtrace_buffer.c: In function ‘wf_backtrace_buffer_compact_marked’:
/build/libwfa2-2.3.3/wavefront/wavefront_backtrace_buffer.c:522:61: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘bt_block_idx_t’ {aka ‘unsigned int’} [-Wformat=]
522 | fprintf(stderr,"[WFA::BacktraceBuffer] Compacted from %lu MB to %lu MB (%2.2f%%)",
| ~~^
| |
| long unsigned int
| %u
/build/libwfa2-2.3.3/wavefront/wavefront_backtrace_buffer.c:522:71: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘bt_block_idx_t’ {aka ‘unsigned int’} [-Wformat=]
522 | fprintf(stderr,"[WFA::BacktraceBuffer] Compacted from %lu MB to %lu MB (%2.2f%%)",
| ~~^
| |
| long unsigned int
| %u
[ 17%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_affine2p.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_affine2p.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_affine2p.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_affine2p.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_compute_affine2p.c
[ 19%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_affine.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_affine.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_affine.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_affine.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_compute_affine.c
[ 20%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_compute.c
[ 21%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_backtrace.c
[ 22%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_edit.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_edit.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_edit.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_edit.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_compute_edit.c
[ 23%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_linear.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_linear.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_linear.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_linear.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_compute_linear.c
[ 25%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_debug.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_debug.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_debug.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_debug.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_debug.c
[ 26%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_display.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_display.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_display.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_display.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_display.c
[ 27%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_extend.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_extend.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_extend.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_extend.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_extend.c
/build/libwfa2-2.3.3/wavefront/wavefront_debug.c: In function ‘wavefront_report_lite’:
/build/libwfa2-2.3.3/wavefront/wavefront_debug.c:142:23: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=]
142 | fprintf(stream,"\t%luMB\t",CONVERT_B_TO_MB(memory_used));
| ~~^
| |
| long unsigned int
| %llu
/build/libwfa2-2.3.3/wavefront/wavefront_debug.c: In function ‘wavefront_report_verbose_begin’:
/build/libwfa2-2.3.3/wavefront/wavefront_debug.c:188:38: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=]
188 | fprintf(stream," Memory.mode=(%d,%luMB,%luMB,%luMB)\n",
| ~~^
| |
| long unsigned int
| %llu
/build/libwfa2-2.3.3/wavefront/wavefront_debug.c:188:44: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 5 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=]
188 | fprintf(stream," Memory.mode=(%d,%luMB,%luMB,%luMB)\n",
| ~~^
| |
| long unsigned int
| %llu
/build/libwfa2-2.3.3/wavefront/wavefront_debug.c:188:50: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=]
188 | fprintf(stream," Memory.mode=(%d,%luMB,%luMB,%luMB)\n",
| ~~^
| |
| long unsigned int
| %llu
/build/libwfa2-2.3.3/wavefront/wavefront_debug.c: In function ‘wavefront_report_verbose_end’:
/build/libwfa2-2.3.3/wavefront/wavefront_debug.c:201:34: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=]
201 | fprintf(stream," Memory.used=%luMB",
| ~~^
| |
| long unsigned int
| %llu
[ 28%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace_offload.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace_offload.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace_offload.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace_offload.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_backtrace_offload.c
[ 29%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_heuristic.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_heuristic.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_heuristic.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_heuristic.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_heuristic.c
[ 30%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_pcigar.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_pcigar.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_pcigar.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_pcigar.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_pcigar.c
[ 32%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_penalties.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_penalties.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_penalties.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_penalties.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_penalties.c
[ 33%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_bialign.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_bialign.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_bialign.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_bialign.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_bialign.c
[ 34%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_plot.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_plot.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_plot.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_plot.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_plot.c
[ 35%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_slab.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_slab.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_slab.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_slab.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_slab.c
[ 36%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_unialign.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_unialign.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_unialign.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_unialign.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_unialign.c
/build/libwfa2-2.3.3/wavefront/wavefront_unialign.c: In function ‘wavefront_unialign_print_status’:
/build/libwfa2-2.3.3/wavefront/wavefront_unialign.c:485:7: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=]
485 | "] SequenceLength=(%d,%d) Score %d (~ %2.3f%% aligned). "
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/libwfa2-2.3.3/wavefront/wavefront_unialign.c:486:41: note: format string is defined here
486 | "MemoryUsed(WF-Slab,BT-buffer)=(%lu MB,%lu MB). "
| ~~^
| |
| long unsigned int
| %llu
/build/libwfa2-2.3.3/wavefront/wavefront_unialign.c:485:7: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=]
485 | "] SequenceLength=(%d,%d) Score %d (~ %2.3f%% aligned). "
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/libwfa2-2.3.3/wavefront/wavefront_unialign.c:486:48: note: format string is defined here
486 | "MemoryUsed(WF-Slab,BT-buffer)=(%lu MB,%lu MB). "
| ~~^
| |
| long unsigned int
| %llu
[ 38%] Building C object CMakeFiles/wfa2_static.dir/system/mm_stack.c.o
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[ 39%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_bialigner.c.o
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[ 40%] Building C object CMakeFiles/wfa2_static.dir/system/mm_allocator.c.o
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[ 41%] Building C object CMakeFiles/wfa2_static.dir/system/profiler_counter.c.o
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[ 42%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront.c
[ 44%] Building C object CMakeFiles/wfa2_static.dir/system/profiler_timer.c.o
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[ 45%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_components.c.o
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[ 46%] Building C object CMakeFiles/wfa2_static.dir/utils/bitmap.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2_static.dir/utils/bitmap.c.o -MF CMakeFiles/wfa2_static.dir/utils/bitmap.c.o.d -o CMakeFiles/wfa2_static.dir/utils/bitmap.c.o -c /build/libwfa2-2.3.3/utils/bitmap.c
[ 47%] Building C object CMakeFiles/wfa2_static.dir/utils/dna_text.c.o
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[ 48%] Building C object CMakeFiles/wfa2_static.dir/utils/sequence_buffer.c.o
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[ 50%] Building C object CMakeFiles/wfa2_static.dir/utils/vector.c.o
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[ 51%] Building C object CMakeFiles/wfa2_static.dir/utils/commons.c.o
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[ 52%] Building C object CMakeFiles/wfa2_static.dir/utils/heatmap.c.o
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[ 53%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine2p.c.o
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[ 54%] Building C object CMakeFiles/wfa2_static.dir/utils/string_padded.c.o
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[ 55%] Building C object CMakeFiles/wfa2_static.dir/alignment/affine2p_penalties.c.o
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[ 57%] Building C object CMakeFiles/wfa2_static.dir/alignment/affine_penalties.c.o
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[ 58%] Building C object CMakeFiles/wfa2_static.dir/alignment/cigar.c.o
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[ 59%] Building C object CMakeFiles/wfa2_static.dir/alignment/score_matrix.c.o
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[ 60%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_compute_affine.c
[ 61%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_compute.c.o
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[ 63%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_compute_edit.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_compute_edit.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_compute_edit.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_compute_edit.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_compute_edit.c
[ 64%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_compute_linear.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_compute_linear.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_compute_linear.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_compute_linear.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_compute_linear.c
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/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_debug.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_debug.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_debug.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_debug.c
[ 66%] Built target wfa2_static
[ 67%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_display.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_display.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_display.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_display.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_display.c
[ 69%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_extend.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_extend.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_extend.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_extend.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_extend.c
[ 70%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_heuristic.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_heuristic.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_heuristic.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_heuristic.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_heuristic.c
/build/libwfa2-2.3.3/wavefront/wavefront_debug.c: In function ‘wavefront_report_lite’:
/build/libwfa2-2.3.3/wavefront/wavefront_debug.c:142:23: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=]
142 | fprintf(stream,"\t%luMB\t",CONVERT_B_TO_MB(memory_used));
| ~~^
| |
| long unsigned int
| %llu
/build/libwfa2-2.3.3/wavefront/wavefront_debug.c: In function ‘wavefront_report_verbose_begin’:
/build/libwfa2-2.3.3/wavefront/wavefront_debug.c:188:38: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=]
188 | fprintf(stream," Memory.mode=(%d,%luMB,%luMB,%luMB)\n",
| ~~^
| |
| long unsigned int
| %llu
/build/libwfa2-2.3.3/wavefront/wavefront_debug.c:188:44: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 5 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=]
188 | fprintf(stream," Memory.mode=(%d,%luMB,%luMB,%luMB)\n",
| ~~^
| |
| long unsigned int
| %llu
/build/libwfa2-2.3.3/wavefront/wavefront_debug.c:188:50: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=]
188 | fprintf(stream," Memory.mode=(%d,%luMB,%luMB,%luMB)\n",
| ~~^
| |
| long unsigned int
| %llu
/build/libwfa2-2.3.3/wavefront/wavefront_debug.c: In function ‘wavefront_report_verbose_end’:
/build/libwfa2-2.3.3/wavefront/wavefront_debug.c:201:34: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=]
201 | fprintf(stream," Memory.used=%luMB",
| ~~^
| |
| long unsigned int
| %llu
[ 71%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_pcigar.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_pcigar.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_pcigar.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_pcigar.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_pcigar.c
[ 72%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_penalties.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_penalties.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_penalties.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_penalties.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_penalties.c
[ 73%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_plot.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_plot.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_plot.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_plot.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_plot.c
[ 75%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_slab.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_slab.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_slab.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_slab.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_slab.c
[ 76%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_unialign.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_unialign.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_unialign.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_unialign.c.o -c /build/libwfa2-2.3.3/wavefront/wavefront_unialign.c
[ 77%] Building C object CMakeFiles/wfa2.dir/system/mm_stack.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/system/mm_stack.c.o -MF CMakeFiles/wfa2.dir/system/mm_stack.c.o.d -o CMakeFiles/wfa2.dir/system/mm_stack.c.o -c /build/libwfa2-2.3.3/system/mm_stack.c
/build/libwfa2-2.3.3/wavefront/wavefront_unialign.c: In function ‘wavefront_unialign_print_status’:
/build/libwfa2-2.3.3/wavefront/wavefront_unialign.c:485:7: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=]
485 | "] SequenceLength=(%d,%d) Score %d (~ %2.3f%% aligned). "
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/libwfa2-2.3.3/wavefront/wavefront_unialign.c:486:41: note: format string is defined here
486 | "MemoryUsed(WF-Slab,BT-buffer)=(%lu MB,%lu MB). "
| ~~^
| |
| long unsigned int
| %llu
/build/libwfa2-2.3.3/wavefront/wavefront_unialign.c:485:7: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=]
485 | "] SequenceLength=(%d,%d) Score %d (~ %2.3f%% aligned). "
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/libwfa2-2.3.3/wavefront/wavefront_unialign.c:486:48: note: format string is defined here
486 | "MemoryUsed(WF-Slab,BT-buffer)=(%lu MB,%lu MB). "
| ~~^
| |
| long unsigned int
| %llu
[ 78%] Building C object CMakeFiles/wfa2.dir/system/mm_allocator.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/system/mm_allocator.c.o -MF CMakeFiles/wfa2.dir/system/mm_allocator.c.o.d -o CMakeFiles/wfa2.dir/system/mm_allocator.c.o -c /build/libwfa2-2.3.3/system/mm_allocator.c
[ 79%] Building C object CMakeFiles/wfa2.dir/system/profiler_counter.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/system/profiler_counter.c.o -MF CMakeFiles/wfa2.dir/system/profiler_counter.c.o.d -o CMakeFiles/wfa2.dir/system/profiler_counter.c.o -c /build/libwfa2-2.3.3/system/profiler_counter.c
[ 80%] Building C object CMakeFiles/wfa2.dir/system/profiler_timer.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/system/profiler_timer.c.o -MF CMakeFiles/wfa2.dir/system/profiler_timer.c.o.d -o CMakeFiles/wfa2.dir/system/profiler_timer.c.o -c /build/libwfa2-2.3.3/system/profiler_timer.c
[ 82%] Building C object CMakeFiles/wfa2.dir/utils/bitmap.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/utils/bitmap.c.o -MF CMakeFiles/wfa2.dir/utils/bitmap.c.o.d -o CMakeFiles/wfa2.dir/utils/bitmap.c.o -c /build/libwfa2-2.3.3/utils/bitmap.c
[ 83%] Building C object CMakeFiles/wfa2.dir/utils/dna_text.c.o
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[ 84%] Building C object CMakeFiles/wfa2.dir/utils/sequence_buffer.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/utils/sequence_buffer.c.o -MF CMakeFiles/wfa2.dir/utils/sequence_buffer.c.o.d -o CMakeFiles/wfa2.dir/utils/sequence_buffer.c.o -c /build/libwfa2-2.3.3/utils/sequence_buffer.c
[ 85%] Building C object CMakeFiles/wfa2.dir/utils/vector.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/utils/vector.c.o -MF CMakeFiles/wfa2.dir/utils/vector.c.o.d -o CMakeFiles/wfa2.dir/utils/vector.c.o -c /build/libwfa2-2.3.3/utils/vector.c
[ 86%] Building C object CMakeFiles/wfa2.dir/utils/commons.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/utils/commons.c.o -MF CMakeFiles/wfa2.dir/utils/commons.c.o.d -o CMakeFiles/wfa2.dir/utils/commons.c.o -c /build/libwfa2-2.3.3/utils/commons.c
[ 88%] Building C object CMakeFiles/wfa2.dir/utils/heatmap.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/utils/heatmap.c.o -MF CMakeFiles/wfa2.dir/utils/heatmap.c.o.d -o CMakeFiles/wfa2.dir/utils/heatmap.c.o -c /build/libwfa2-2.3.3/utils/heatmap.c
[ 89%] Building C object CMakeFiles/wfa2.dir/utils/string_padded.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/utils/string_padded.c.o -MF CMakeFiles/wfa2.dir/utils/string_padded.c.o.d -o CMakeFiles/wfa2.dir/utils/string_padded.c.o -c /build/libwfa2-2.3.3/utils/string_padded.c
[ 90%] Building C object CMakeFiles/wfa2.dir/alignment/affine2p_penalties.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/alignment/affine2p_penalties.c.o -MF CMakeFiles/wfa2.dir/alignment/affine2p_penalties.c.o.d -o CMakeFiles/wfa2.dir/alignment/affine2p_penalties.c.o -c /build/libwfa2-2.3.3/alignment/affine2p_penalties.c
[ 91%] Building C object CMakeFiles/wfa2.dir/alignment/affine_penalties.c.o
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[ 92%] Building C object CMakeFiles/wfa2.dir/alignment/cigar.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/alignment/cigar.c.o -MF CMakeFiles/wfa2.dir/alignment/cigar.c.o.d -o CMakeFiles/wfa2.dir/alignment/cigar.c.o -c /build/libwfa2-2.3.3/alignment/cigar.c
[ 94%] Building C object CMakeFiles/wfa2.dir/alignment/score_matrix.c.o
/usr/bin/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/wfa2.dir/alignment/score_matrix.c.o -MF CMakeFiles/wfa2.dir/alignment/score_matrix.c.o.d -o CMakeFiles/wfa2.dir/alignment/score_matrix.c.o -c /build/libwfa2-2.3.3/alignment/score_matrix.c
[ 95%] Linking C shared library libwfa2.so
/usr/bin/cmake -E cmake_link_script CMakeFiles/wfa2.dir/link.txt --verbose=1
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/usr/bin/cmake -E cmake_symlink_library libwfa2.so.0 libwfa2.so.0 libwfa2.so
make[3]: uscita dalla directory «/build/libwfa2-2.3.3/obj-arm-linux-gnueabihf»
[ 95%] Built target wfa2
make -f CMakeFiles/wfa2cpp_static.dir/build.make CMakeFiles/wfa2cpp_static.dir/depend
make -f CMakeFiles/wfa2cpp.dir/build.make CMakeFiles/wfa2cpp.dir/depend
make[3]: ingresso nella directory «/build/libwfa2-2.3.3/obj-arm-linux-gnueabihf»
cd /build/libwfa2-2.3.3/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libwfa2-2.3.3 /build/libwfa2-2.3.3 /build/libwfa2-2.3.3/obj-arm-linux-gnueabihf /build/libwfa2-2.3.3/obj-arm-linux-gnueabihf /build/libwfa2-2.3.3/obj-arm-linux-gnueabihf/CMakeFiles/wfa2cpp_static.dir/DependInfo.cmake --color=
make[3]: ingresso nella directory «/build/libwfa2-2.3.3/obj-arm-linux-gnueabihf»
cd /build/libwfa2-2.3.3/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libwfa2-2.3.3 /build/libwfa2-2.3.3 /build/libwfa2-2.3.3/obj-arm-linux-gnueabihf /build/libwfa2-2.3.3/obj-arm-linux-gnueabihf /build/libwfa2-2.3.3/obj-arm-linux-gnueabihf/CMakeFiles/wfa2cpp.dir/DependInfo.cmake --color=
make[3]: uscita dalla directory «/build/libwfa2-2.3.3/obj-arm-linux-gnueabihf»
make -f CMakeFiles/wfa2cpp_static.dir/build.make CMakeFiles/wfa2cpp_static.dir/build
make[3]: ingresso nella directory «/build/libwfa2-2.3.3/obj-arm-linux-gnueabihf»
make[3]: uscita dalla directory «/build/libwfa2-2.3.3/obj-arm-linux-gnueabihf»
make -f CMakeFiles/wfa2cpp.dir/build.make CMakeFiles/wfa2cpp.dir/build
make[3]: ingresso nella directory «/build/libwfa2-2.3.3/obj-arm-linux-gnueabihf»
[ 96%] Building CXX object CMakeFiles/wfa2cpp_static.dir/bindings/cpp/WFAligner.cpp.o
/usr/bin/c++ -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=gnu++17 -MD -MT CMakeFiles/wfa2cpp_static.dir/bindings/cpp/WFAligner.cpp.o -MF CMakeFiles/wfa2cpp_static.dir/bindings/cpp/WFAligner.cpp.o.d -o CMakeFiles/wfa2cpp_static.dir/bindings/cpp/WFAligner.cpp.o -c /build/libwfa2-2.3.3/bindings/cpp/WFAligner.cpp
[ 97%] Building CXX object CMakeFiles/wfa2cpp.dir/bindings/cpp/WFAligner.cpp.o
/usr/bin/c++ -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2cpp_EXPORTS -I/build/libwfa2-2.3.3/. -I/build/libwfa2-2.3.3/wavefront -I/build/libwfa2-2.3.3/utils -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=gnu++17 -MD -MT CMakeFiles/wfa2cpp.dir/bindings/cpp/WFAligner.cpp.o -MF CMakeFiles/wfa2cpp.dir/bindings/cpp/WFAligner.cpp.o.d -o CMakeFiles/wfa2cpp.dir/bindings/cpp/WFAligner.cpp.o -c /build/libwfa2-2.3.3/bindings/cpp/WFAligner.cpp
[ 98%] Linking CXX static library libwfa2cpp.a
/usr/bin/cmake -P CMakeFiles/wfa2cpp_static.dir/cmake_clean_target.cmake
[100%] Linking CXX shared library libwfa2cpp.so
/usr/bin/cmake -E cmake_link_script CMakeFiles/wfa2cpp.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/libwfa2-2.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libwfa2cpp.so.0 -o libwfa2cpp.so.0 CMakeFiles/wfa2cpp.dir/bindings/cpp/WFAligner.cpp.o -Wl,-rpath,/build/libwfa2-2.3.3/obj-arm-linux-gnueabihf: libwfa2.so.0
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/usr/bin/ar qc libwfa2cpp.a CMakeFiles/wfa2cpp_static.dir/bindings/cpp/WFAligner.cpp.o
/usr/bin/ranlib libwfa2cpp.a
make[3]: uscita dalla directory «/build/libwfa2-2.3.3/obj-arm-linux-gnueabihf»
[100%] Built target wfa2cpp_static
/usr/bin/cmake -E cmake_symlink_library libwfa2cpp.so.0 libwfa2cpp.so.0 libwfa2cpp.so
make[3]: uscita dalla directory «/build/libwfa2-2.3.3/obj-arm-linux-gnueabihf»
[100%] Built target wfa2cpp
make[2]: uscita dalla directory «/build/libwfa2-2.3.3/obj-arm-linux-gnueabihf»
/usr/bin/cmake -E cmake_progress_start /build/libwfa2-2.3.3/obj-arm-linux-gnueabihf/CMakeFiles 0
make[1]: uscita dalla directory «/build/libwfa2-2.3.3/obj-arm-linux-gnueabihf»
dh_auto_test -O--buildsystem=cmake
cd obj-arm-linux-gnueabihf && make -j4 test ARGS\+=--verbose ARGS\+=-j4
make[1]: ingresso nella directory «/build/libwfa2-2.3.3/obj-arm-linux-gnueabihf»
Running tests...
/usr/bin/ctest --force-new-ctest-process --verbose -j4
UpdateCTestConfiguration from :/build/libwfa2-2.3.3/obj-arm-linux-gnueabihf/DartConfiguration.tcl
UpdateCTestConfiguration from :/build/libwfa2-2.3.3/obj-arm-linux-gnueabihf/DartConfiguration.tcl
Test project /build/libwfa2-2.3.3/obj-arm-linux-gnueabihf
Constructing a list of tests
Done constructing a list of tests
Updating test list for fixtures
Added 0 tests to meet fixture requirements
Checking test dependency graph...
Checking test dependency graph end
test 1
Start 1: wfa2lib
1: Test command: /build/libwfa2-2.3.3/tests/wfa.utest.sh
1: Working Directory: /build/libwfa2-2.3.3
1: Test timeout computed to be: 10000000
1: + BIN=./bin/align_benchmark
1: + INPUT=./tests/wfa.utest.seq
1: + OUTPUT=./tests
1: + LOG=./tests/wfa.utest.log
1: + rm './tests/*.alg' './tests/*.log*'
1: rm: impossibile rimuovere './tests/*.alg': File o directory non esistente
1: rm: impossibile rimuovere './tests/*.log*': File o directory non esistente
1: + for opt in "--check=correct","test" "--wfa-score-only","test.score" "--wfa-memory-mode=med --check=correct","test.pb" "--wfa-memory-mode=ultralow --check=correct","test.biwfa" "--wfa-memory-mode=ultralow --wfa-score-only","test.biwfa.score"
1: + IFS=,
1: + set -- --check=correct test
1: + IFS=' '
1: + MODE=--check=correct
1: + PREFIX=test
1: + echo '>>> Testing '\''test'\'' (--check=correct)'
1: >>> Testing 'test' (--check=correct)
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.indel.alg -a indel-wfa --check=correct
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.edit.alg -a edit-wfa --check=correct
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.affine.alg -a gap-affine-wfa --check=correct
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.affine2p.alg -a gap-affine2p-wfa --check=correct
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.affine.p0.alg -a gap-affine-wfa --check=correct --affine-penalties=0,1,2,1
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.affine.p1.alg -a gap-affine-wfa --check=correct --affine-penalties=0,3,1,4
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.affine.p2.alg -a gap-affine-wfa --check=correct --affine-penalties=0,5,3,2
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.affine.p3.alg -a gap-affine-wfa --check=correct --affine-penalties=-5,1,2,1
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.affine.p4.alg -a gap-affine-wfa --check=correct --affine-penalties=-2,3,1,4
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.affine.p5.alg -a gap-affine-wfa --check=correct --affine-penalties=-3,5,3,2
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.affine.wfapt0.alg -a gap-affine-wfa --check=correct --wfa-heuristic=wfa-adaptive --wfa-heuristic-parameters=10,50,1
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.affine.wfapt1.alg -a gap-affine-wfa --check=correct --wfa-heuristic=wfa-adaptive --wfa-heuristic-parameters=10,50,10
1: + for opt in "--check=correct","test" "--wfa-score-only","test.score" "--wfa-memory-mode=med --check=correct","test.pb" "--wfa-memory-mode=ultralow --check=correct","test.biwfa" "--wfa-memory-mode=ultralow --wfa-score-only","test.biwfa.score"
1: + IFS=,
1: + set -- --wfa-score-only test.score
1: + IFS=' '
1: + MODE=--wfa-score-only
1: + PREFIX=test.score
1: + echo '>>> Testing '\''test.score'\'' (--wfa-score-only)'
1: >>> Testing 'test.score' (--wfa-score-only)
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.indel.alg -a indel-wfa --wfa-score-only
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.edit.alg -a edit-wfa --wfa-score-only
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.affine.alg -a gap-affine-wfa --wfa-score-only
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.affine2p.alg -a gap-affine2p-wfa --wfa-score-only
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.affine.p0.alg -a gap-affine-wfa --wfa-score-only --affine-penalties=0,1,2,1
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.affine.p1.alg -a gap-affine-wfa --wfa-score-only --affine-penalties=0,3,1,4
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.affine.p2.alg -a gap-affine-wfa --wfa-score-only --affine-penalties=0,5,3,2
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.affine.p3.alg -a gap-affine-wfa --wfa-score-only --affine-penalties=-5,1,2,1
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.affine.p4.alg -a gap-affine-wfa --wfa-score-only --affine-penalties=-2,3,1,4
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.affine.p5.alg -a gap-affine-wfa --wfa-score-only --affine-penalties=-3,5,3,2
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.affine.wfapt0.alg -a gap-affine-wfa --wfa-score-only --wfa-heuristic=wfa-adaptive --wfa-heuristic-parameters=10,50,1
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.score.affine.wfapt1.alg -a gap-affine-wfa --wfa-score-only --wfa-heuristic=wfa-adaptive --wfa-heuristic-parameters=10,50,10
1: + for opt in "--check=correct","test" "--wfa-score-only","test.score" "--wfa-memory-mode=med --check=correct","test.pb" "--wfa-memory-mode=ultralow --check=correct","test.biwfa" "--wfa-memory-mode=ultralow --wfa-score-only","test.biwfa.score"
1: + IFS=,
1: + set -- '--wfa-memory-mode=med --check=correct' test.pb
1: + IFS=' '
1: + MODE='--wfa-memory-mode=med --check=correct'
1: + PREFIX=test.pb
1: + echo '>>> Testing '\''test.pb'\'' (--wfa-memory-mode=med --check=correct)'
1: >>> Testing 'test.pb' (--wfa-memory-mode=med --check=correct)
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.indel.alg -a indel-wfa --wfa-memory-mode=med --check=correct
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.edit.alg -a edit-wfa --wfa-memory-mode=med --check=correct
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.affine.alg -a gap-affine-wfa --wfa-memory-mode=med --check=correct
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.affine2p.alg -a gap-affine2p-wfa --wfa-memory-mode=med --check=correct
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.affine.p0.alg -a gap-affine-wfa --wfa-memory-mode=med --check=correct --affine-penalties=0,1,2,1
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.affine.p1.alg -a gap-affine-wfa --wfa-memory-mode=med --check=correct --affine-penalties=0,3,1,4
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.affine.p2.alg -a gap-affine-wfa --wfa-memory-mode=med --check=correct --affine-penalties=0,5,3,2
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.affine.p3.alg -a gap-affine-wfa --wfa-memory-mode=med --check=correct --affine-penalties=-5,1,2,1
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.affine.p4.alg -a gap-affine-wfa --wfa-memory-mode=med --check=correct --affine-penalties=-2,3,1,4
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.affine.p5.alg -a gap-affine-wfa --wfa-memory-mode=med --check=correct --affine-penalties=-3,5,3,2
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.affine.wfapt0.alg -a gap-affine-wfa --wfa-memory-mode=med --check=correct --wfa-heuristic=wfa-adaptive --wfa-heuristic-parameters=10,50,1
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.pb.affine.wfapt1.alg -a gap-affine-wfa --wfa-memory-mode=med --check=correct --wfa-heuristic=wfa-adaptive --wfa-heuristic-parameters=10,50,10
1: + for opt in "--check=correct","test" "--wfa-score-only","test.score" "--wfa-memory-mode=med --check=correct","test.pb" "--wfa-memory-mode=ultralow --check=correct","test.biwfa" "--wfa-memory-mode=ultralow --wfa-score-only","test.biwfa.score"
1: + IFS=,
1: + set -- '--wfa-memory-mode=ultralow --check=correct' test.biwfa
1: + IFS=' '
1: + MODE='--wfa-memory-mode=ultralow --check=correct'
1: + PREFIX=test.biwfa
1: + echo '>>> Testing '\''test.biwfa'\'' (--wfa-memory-mode=ultralow --check=correct)'
1: >>> Testing 'test.biwfa' (--wfa-memory-mode=ultralow --check=correct)
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.indel.alg -a indel-wfa --wfa-memory-mode=ultralow --check=correct
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.edit.alg -a edit-wfa --wfa-memory-mode=ultralow --check=correct
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.affine.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --check=correct
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.affine2p.alg -a gap-affine2p-wfa --wfa-memory-mode=ultralow --check=correct
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.affine.p0.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --check=correct --affine-penalties=0,1,2,1
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.affine.p1.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --check=correct --affine-penalties=0,3,1,4
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.affine.p2.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --check=correct --affine-penalties=0,5,3,2
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.affine.p3.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --check=correct --affine-penalties=-5,1,2,1
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.affine.p4.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --check=correct --affine-penalties=-2,3,1,4
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.affine.p5.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --check=correct --affine-penalties=-3,5,3,2
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.affine.wfapt0.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --check=correct --wfa-heuristic=wfa-adaptive --wfa-heuristic-parameters=10,50,1
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.affine.wfapt1.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --check=correct --wfa-heuristic=wfa-adaptive --wfa-heuristic-parameters=10,50,10
1: + for opt in "--check=correct","test" "--wfa-score-only","test.score" "--wfa-memory-mode=med --check=correct","test.pb" "--wfa-memory-mode=ultralow --check=correct","test.biwfa" "--wfa-memory-mode=ultralow --wfa-score-only","test.biwfa.score"
1: + IFS=,
1: + set -- '--wfa-memory-mode=ultralow --wfa-score-only' test.biwfa.score
1: + IFS=' '
1: + MODE='--wfa-memory-mode=ultralow --wfa-score-only'
1: + PREFIX=test.biwfa.score
1: + echo '>>> Testing '\''test.biwfa.score'\'' (--wfa-memory-mode=ultralow --wfa-score-only)'
1: >>> Testing 'test.biwfa.score' (--wfa-memory-mode=ultralow --wfa-score-only)
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.indel.alg -a indel-wfa --wfa-memory-mode=ultralow --wfa-score-only
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.edit.alg -a edit-wfa --wfa-memory-mode=ultralow --wfa-score-only
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.affine.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --wfa-score-only
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.affine2p.alg -a gap-affine2p-wfa --wfa-memory-mode=ultralow --wfa-score-only
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.affine.p0.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --wfa-score-only --affine-penalties=0,1,2,1
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.affine.p1.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --wfa-score-only --affine-penalties=0,3,1,4
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.affine.p2.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --wfa-score-only --affine-penalties=0,5,3,2
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.affine.p3.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --wfa-score-only --affine-penalties=-5,1,2,1
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.affine.p4.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --wfa-score-only --affine-penalties=-2,3,1,4
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.affine.p5.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --wfa-score-only --affine-penalties=-3,5,3,2
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.affine.wfapt0.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --wfa-score-only --wfa-heuristic=wfa-adaptive --wfa-heuristic-parameters=10,50,1
1: + time -v ./bin/align_benchmark -i ./tests/wfa.utest.seq -o ./tests/test.biwfa.score.affine.wfapt1.alg -a gap-affine-wfa --wfa-memory-mode=ultralow --wfa-score-only --wfa-heuristic=wfa-adaptive --wfa-heuristic-parameters=10,50,10
1: + diff tests/wfa.utest.check/test.edit.alg tests/wfa.utest.check/test.pb.edit.alg
1: + diff tests/wfa.utest.check/test.indel.alg tests/wfa.utest.check/test.pb.indel.alg
1: + diff tests/wfa.utest.check/test.affine.alg tests/wfa.utest.check/test.pb.affine.alg
1: + diff tests/wfa.utest.check/test.affine2p.alg tests/wfa.utest.check/test.pb.affine2p.alg
1: + diff tests/wfa.utest.check/test.affine.p0.alg tests/wfa.utest.check/test.pb.affine.p0.alg
1: + diff tests/wfa.utest.check/test.affine.p1.alg tests/wfa.utest.check/test.pb.affine.p1.alg
1: + diff tests/wfa.utest.check/test.affine.p2.alg tests/wfa.utest.check/test.pb.affine.p2.alg
1: + diff tests/wfa.utest.check/test.affine.p3.alg tests/wfa.utest.check/test.pb.affine.p3.alg
1: + diff tests/wfa.utest.check/test.affine.p4.alg tests/wfa.utest.check/test.pb.affine.p4.alg
1: + diff tests/wfa.utest.check/test.affine.p5.alg tests/wfa.utest.check/test.pb.affine.p5.alg
1: + diff tests/wfa.utest.check/test.affine.wfapt0.alg tests/wfa.utest.check/test.pb.affine.wfapt0.alg
1: + diff tests/wfa.utest.check/test.affine.wfapt1.alg tests/wfa.utest.check/test.pb.affine.wfapt1.alg
1: + ./scripts/wfa.alg.cmp.score.sh tests/wfa.utest.check/test.edit.alg tests/wfa.utest.check/test.biwfa.edit.alg
1: + ./scripts/wfa.alg.cmp.score.sh tests/wfa.utest.check/test.indel.alg tests/wfa.utest.check/test.biwfa.indel.alg
1: + ./scripts/wfa.alg.cmp.score.sh tests/wfa.utest.check/test.affine.alg tests/wfa.utest.check/test.biwfa.affine.alg
1: + ./scripts/wfa.alg.cmp.score.sh tests/wfa.utest.check/test.affine2p.alg tests/wfa.utest.check/test.biwfa.affine2p.alg
1: + ./scripts/wfa.alg.cmp.score.sh tests/wfa.utest.check/test.affine.p0.alg tests/wfa.utest.check/test.biwfa.affine.p0.alg
1: + ./scripts/wfa.alg.cmp.score.sh tests/wfa.utest.check/test.affine.p1.alg tests/wfa.utest.check/test.biwfa.affine.p1.alg
1: + ./scripts/wfa.alg.cmp.score.sh tests/wfa.utest.check/test.affine.p2.alg tests/wfa.utest.check/test.biwfa.affine.p2.alg
1: + ./scripts/wfa.alg.cmp.score.sh tests/wfa.utest.check/test.affine.p3.alg tests/wfa.utest.check/test.biwfa.affine.p3.alg
1: + ./scripts/wfa.alg.cmp.score.sh tests/wfa.utest.check/test.affine.p4.alg tests/wfa.utest.check/test.biwfa.affine.p4.alg
1: + ./scripts/wfa.alg.cmp.score.sh tests/wfa.utest.check/test.affine.p5.alg tests/wfa.utest.check/test.biwfa.affine.p5.alg
1: + ./scripts/wfa.alg.cmp.score.sh tests/wfa.utest.check/test.affine.wfapt0.alg tests/wfa.utest.check/test.biwfa.affine.wfapt0.alg
1: + ./scripts/wfa.alg.cmp.score.sh tests/wfa.utest.check/test.affine.wfapt1.alg tests/wfa.utest.check/test.biwfa.affine.wfapt1.alg
1: + grep Alignments.Correct ./tests/wfa.utest.log
1: + grep Time.Alignment ./tests/wfa.utest.log
1: + awk '{if ($4 != "ms") print $3" "$4}'
1: + sort -n
1: + grep 'Maximum resident set size' ./tests/wfa.utest.log
1: + awk '{print $6}'
1: + sort -n
1: + echo -n '>>> Correct: '
1: >>> Correct: + tail -n 4 ./tests/wfa.utest.log.time ./tests/wfa.utest.check/wfa.utest.log.time
1: ==> ./tests/wfa.utest.log.time <==
1:
1: ==> ./tests/wfa.utest.check/wfa.utest.log.time <==
1: 4.01 s
1: 5.01 s
1: 7.65 s
1: 13.33 s
1: + tail -n 4 ./tests/wfa.utest.log.mem ./tests/wfa.utest.check/wfa.utest.log.mem
1: ==> ./tests/wfa.utest.log.mem <==
1:
1: ==> ./tests/wfa.utest.check/wfa.utest.log.mem <==
1: 414740
1: 566220
1: 827568
1: 1783148
1: + ./tests/wfa.utest.cmp.sh ./tests ./tests/wfa.utest.check
1: > Comparing ./tests vs ./tests/wfa.utest.check
1: [UTest::*] ./tests/wfa.utest.check/*.alg doesn't exist.
1: + grep 'Exit status:' ./tests/wfa.utest.log
1: + uniq -c
1: + sort
1: + grep 'Command terminated by signal' ./tests/wfa.utest.log
1: + uniq -c
1: + sort
1: + cat ./tests/wfa.utest.log.correct
1: + sort
1: + awk '{print $5$6}'
1: + uniq -c
1/1 Test #1: wfa2lib .......................... Passed 2.99 sec
100% tests passed, 0 tests failed out of 1
Total Test time (real) = 3.01 sec
make[1]: uscita dalla directory «/build/libwfa2-2.3.3/obj-arm-linux-gnueabihf»
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=cmake
dh_prep -O--buildsystem=cmake
dh_auto_install -O--buildsystem=cmake
cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/libwfa2-2.3.3/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: ingresso nella directory «/build/libwfa2-2.3.3/obj-arm-linux-gnueabihf»
/usr/bin/cmake -S/build/libwfa2-2.3.3 -B/build/libwfa2-2.3.3/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: ingresso nella directory «/build/libwfa2-2.3.3/obj-arm-linux-gnueabihf»
make[2]: Nessuna operazione da eseguire per «preinstall».
make[2]: uscita dalla directory «/build/libwfa2-2.3.3/obj-arm-linux-gnueabihf»
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/lib/arm-linux-gnueabihf/libwfa2.a
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/lib/arm-linux-gnueabihf/libwfa2.so.0
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/lib/arm-linux-gnueabihf/libwfa2.so
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_align.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_aligner.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_attributes.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_backtrace.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_backtrace_buffer.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_backtrace_offload.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_bialign.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_bialigner.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_components.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_compute.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_compute_affine.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_compute_affine2p.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_compute_edit.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_compute_linear.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_debug.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_display.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_extend.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_heuristic.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_offset.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_pcigar.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_penalties.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_plot.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_slab.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wavefront_unialign.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wfa.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/wavefront/wfa.hpp
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/utils/bitmap.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/utils/commons.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/utils/dna_text.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/utils/heatmap.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/utils/sequence_buffer.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/utils/string_padded.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/utils/vector.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/alignment/affine2p_penalties.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/alignment/affine_penalties.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/alignment/cigar.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/alignment/linear_penalties.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/alignment/score_matrix.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/system/mm_allocator.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/system/mm_stack.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/system/profiler_counter.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/system/profiler_timer.h
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/lib/arm-linux-gnueabihf/libwfa2cpp.so.0
-- Set runtime path of "/build/libwfa2-2.3.3/debian/tmp/usr/lib/arm-linux-gnueabihf/libwfa2cpp.so.0" to ""
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/lib/arm-linux-gnueabihf/libwfa2cpp.so
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/lib/arm-linux-gnueabihf/libwfa2cpp.a
-- Installing: /build/libwfa2-2.3.3/debian/tmp/usr/include/wfa2lib/bindings/cpp/WFAligner.hpp
make[1]: uscita dalla directory «/build/libwfa2-2.3.3/obj-arm-linux-gnueabihf»
debian/rules override_dh_install
make[1]: ingresso nella directory «/build/libwfa2-2.3.3»
dh_install
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--movedev debian/tmp/usr/include usr \
debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
set -e
install -d -m 755 debian/libwfa2-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libwfa2-0/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libwfa2.a debian/libwfa2-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libwfa2.so debian/libwfa2-dev/usr/lib/arm-linux-gnueabihf
mv /build/libwfa2-2.3.3/debian/tmp/usr/lib/arm-linux-gnueabihf/libwfa2.so.0 debian/libwfa2-0/usr/lib/arm-linux-gnueabihf
PKGDEV=libwfa2-dev
PKGSHL=libwfa2-0
install -d -m 755 debian/libwfa2-dev/usr
mv debian/tmp/usr/include debian/libwfa2-dev/usr
make[1]: uscita dalla directory «/build/libwfa2-2.3.3»
dh_installdocs -O--buildsystem=cmake
dh_installchangelogs -O--buildsystem=cmake
dh_installsystemduser -O--buildsystem=cmake
dh_perl -O--buildsystem=cmake
dh_link -O--buildsystem=cmake
dh_strip_nondeterminism -O--buildsystem=cmake
dh_compress -O--buildsystem=cmake
dh_fixperms -O--buildsystem=cmake
dh_missing -O--buildsystem=cmake
dh_dwz -a -O--buildsystem=cmake
dh_strip -a -O--buildsystem=cmake
dh_makeshlibs -a -O--buildsystem=cmake
dh_shlibdeps -a -O--buildsystem=cmake
dpkg-shlibdeps: warning: symbol sqrt used by debian/libwfa2-0/usr/lib/arm-linux-gnueabihf/libwfa2.so.0 found in none of the libraries
dh_installdeb -O--buildsystem=cmake
dh_gencontrol -O--buildsystem=cmake
dpkg-gencontrol: warning: Depends field of package libwfa2-dev: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums -O--buildsystem=cmake
dh_builddeb -O--buildsystem=cmake
dpkg-deb: generazione del pacchetto "libwfa2-0-dbgsym" in "../libwfa2-0-dbgsym_2.3.3-1_armhf.deb".
dpkg-deb: generazione del pacchetto "libwfa2-0" in "../libwfa2-0_2.3.3-1_armhf.deb".
dpkg-deb: generazione del pacchetto "libwfa2-dev" in "../libwfa2-dev_2.3.3-1_armhf.deb".
dpkg-genbuildinfo --build=binary -O../libwfa2_2.3.3-1_armhf.buildinfo
dpkg-genchanges --build=binary -O../libwfa2_2.3.3-1_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/19998/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/19998/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/19998 and its subdirectories
I: Current time: Thu May 25 20:50:01 +14 2023
I: pbuilder-time-stamp: 1684997401