I: pbuilder: network access will be disabled during build
I: Current time: Sun May 7 23:26:01 -12 2023
I: pbuilder-time-stamp: 1683545161
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [atropos_1.1.31+dfsg-3.dsc]
I: copying [./atropos_1.1.31+dfsg.orig.tar.xz]
I: copying [./atropos_1.1.31+dfsg-3.debian.tar.xz]
I: Extracting source
gpgv: Signature made Mon Apr 4 05:36:28 2022 -12
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "nilesh@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./atropos_1.1.31+dfsg-3.dsc: no acceptable signature found
dpkg-source: info: extracting atropos in atropos-1.1.31+dfsg
dpkg-source: info: unpacking atropos_1.1.31+dfsg.orig.tar.xz
dpkg-source: info: unpacking atropos_1.1.31+dfsg-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying python3.10.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/2584/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='i386'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8'
DISTRIBUTION='bookworm'
HOME='/root'
HOST_ARCH='i386'
IFS='
'
INVOCATION_ID='ba5ebf7a38f246d9980490b29e4e62cc'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
LD_LIBRARY_PATH='/usr/lib/libeatmydata'
LD_PRELOAD='libeatmydata.so'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='2584'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.oEBUGjmy/pbuilderrc_mpQq --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.oEBUGjmy/b1 --logfile b1/build.log atropos_1.1.31+dfsg-3.dsc'
SUDO_GID='112'
SUDO_UID='107'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://78.137.99.97:3128'
I: uname -a
Linux ionos2-i386 5.10.0-22-686-pae #1 SMP Debian 5.10.178-3 (2023-04-22) i686 GNU/Linux
I: ls -l /bin
total 6036
-rwxr-xr-x 1 root root 1408088 Apr 23 09:24 bash
-rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2
-rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep
-rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2
-rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore
-rwxr-xr-x 1 root root 42920 Sep 20 2022 cat
-rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp
-rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod
-rwxr-xr-x 1 root root 79816 Sep 20 2022 chown
-rwxr-xr-x 1 root root 162024 Sep 20 2022 cp
-rwxr-xr-x 1 root root 136916 Jan 5 01:20 dash
-rwxr-xr-x 1 root root 137160 Sep 20 2022 date
-rwxr-xr-x 1 root root 100364 Sep 20 2022 dd
-rwxr-xr-x 1 root root 108940 Sep 20 2022 df
-rwxr-xr-x 1 root root 162152 Sep 20 2022 dir
-rwxr-xr-x 1 root root 87760 Mar 22 22:20 dmesg
lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname
-rwxr-xr-x 1 root root 38760 Sep 20 2022 echo
-rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep
-rwxr-xr-x 1 root root 34664 Sep 20 2022 false
-rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep
-rwxr-xr-x 1 root root 84272 Mar 22 22:20 findmnt
-rwsr-xr-x 1 root root 30240 Mar 22 20:38 fusermount
-rwxr-xr-x 1 root root 218680 Jan 24 02:43 grep
-rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip
-rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe
-rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip
-rwxr-xr-x 1 root root 21916 Dec 19 01:33 hostname
-rwxr-xr-x 1 root root 75756 Sep 20 2022 ln
-rwxr-xr-x 1 root root 55600 Mar 22 23:43 login
-rwxr-xr-x 1 root root 162152 Sep 20 2022 ls
-rwxr-xr-x 1 root root 214568 Mar 22 22:20 lsblk
-rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir
-rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod
-rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp
-rwxr-xr-x 1 root root 63016 Mar 22 22:20 more
-rwsr-xr-x 1 root root 58912 Mar 22 22:20 mount
-rwxr-xr-x 1 root root 13856 Mar 22 22:20 mountpoint
-rwxr-xr-x 1 root root 157932 Sep 20 2022 mv
lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd
lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash
-rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink
-rwxr-xr-x 1 root root 75720 Sep 20 2022 rm
-rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir
-rwxr-xr-x 1 root root 22308 Nov 2 2022 run-parts
-rwxr-xr-x 1 root root 133224 Jan 5 07:55 sed
lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash
-rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep
-rwxr-xr-x 1 root root 87976 Sep 20 2022 stty
-rwsr-xr-x 1 root root 83492 Mar 22 22:20 su
-rwxr-xr-x 1 root root 38792 Sep 20 2022 sync
-rwxr-xr-x 1 root root 598456 Apr 6 02:25 tar
-rwxr-xr-x 1 root root 13860 Nov 2 2022 tempfile
-rwxr-xr-x 1 root root 120776 Sep 20 2022 touch
-rwxr-xr-x 1 root root 34664 Sep 20 2022 true
-rwxr-xr-x 1 root root 17892 Mar 22 20:38 ulockmgr_server
-rwsr-xr-x 1 root root 30236 Mar 22 22:20 umount
-rwxr-xr-x 1 root root 38760 Sep 20 2022 uname
-rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress
-rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir
-rwxr-xr-x 1 root root 71216 Mar 22 22:20 wdctl
lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat
-rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp
-rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff
-rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep
-rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep
-rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce
-rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep
-rwxr-xr-x 1 root root 2206 Apr 9 2022 zless
-rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore
-rwxr-xr-x 1 root root 4577 Apr 9 2022 znew
I: user script /srv/workspace/pbuilder/2584/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-python, cython3, python3-all-dev, python3-setuptools, python3-setuptools-scm, python3-wheel, python3-loguru, python3-xphyle, python3-pytest, python3-jinja2, python3-pysam
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19604 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-python; however:
Package dh-python is not installed.
pbuilder-satisfydepends-dummy depends on cython3; however:
Package cython3 is not installed.
pbuilder-satisfydepends-dummy depends on python3-all-dev; however:
Package python3-all-dev is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools-scm; however:
Package python3-setuptools-scm is not installed.
pbuilder-satisfydepends-dummy depends on python3-wheel; however:
Package python3-wheel is not installed.
pbuilder-satisfydepends-dummy depends on python3-loguru; however:
Package python3-loguru is not installed.
pbuilder-satisfydepends-dummy depends on python3-xphyle; however:
Package python3-xphyle is not installed.
pbuilder-satisfydepends-dummy depends on python3-pytest; however:
Package python3-pytest is not installed.
pbuilder-satisfydepends-dummy depends on python3-jinja2; however:
Package python3-jinja2 is not installed.
pbuilder-satisfydepends-dummy depends on python3-pysam; however:
Package python3-pysam is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcurl3-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libhts3{a} libhtscodecs2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-attr{a} python3-colorama{a} python3-dev{a} python3-distutils{a} python3-iniconfig{a} python3-jinja2{a} python3-lib2to3{a} python3-loguru{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pokrok{a} python3-py{a} python3-pysam{a} python3-pytest{a} python3-setuptools{a} python3-setuptools-scm{a} python3-typing-extensions{a} python3-wheel{a} python3-xphyle{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl javascript-common libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-babel python3-pygments wget
0 packages upgraded, 89 newly installed, 0 to remove and 0 not upgraded.
Need to get 41.0 MB of archives. After unpacking 154 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main i386 libpython3.11-minimal i386 3.11.2-6 [813 kB]
Get: 2 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB]
Get: 3 http://deb.debian.org/debian bookworm/main i386 python3.11-minimal i386 3.11.2-6 [2130 kB]
Get: 4 http://deb.debian.org/debian bookworm/main i386 python3-minimal i386 3.11.2-1+b1 [26.3 kB]
Get: 5 http://deb.debian.org/debian bookworm/main i386 media-types all 10.0.0 [26.1 kB]
Get: 6 http://deb.debian.org/debian bookworm/main i386 readline-common all 8.2-1.3 [69.0 kB]
Get: 7 http://deb.debian.org/debian bookworm/main i386 libreadline8 i386 8.2-1.3 [171 kB]
Get: 8 http://deb.debian.org/debian bookworm/main i386 libpython3.11-stdlib i386 3.11.2-6 [1799 kB]
Get: 9 http://deb.debian.org/debian bookworm/main i386 python3.11 i386 3.11.2-6 [572 kB]
Get: 10 http://deb.debian.org/debian bookworm/main i386 libpython3-stdlib i386 3.11.2-1+b1 [9308 B]
Get: 11 http://deb.debian.org/debian bookworm/main i386 python3 i386 3.11.2-1+b1 [26.3 kB]
Get: 12 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 13 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB]
Get: 14 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB]
Get: 15 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB]
Get: 16 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB]
Get: 17 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB]
Get: 18 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB]
Get: 19 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB]
Get: 20 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB]
Get: 21 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB]
Get: 22 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB]
Get: 23 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB]
Get: 24 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 25 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB]
Get: 26 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB]
Get: 27 http://deb.debian.org/debian bookworm/main i386 cython3 i386 0.29.32-2+b1 [1297 kB]
Get: 28 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 29 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB]
Get: 30 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 31 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 32 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B]
Get: 33 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 34 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 35 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB]
Get: 36 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB]
Get: 37 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB]
Get: 38 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.2 [720 kB]
Get: 39 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB]
Get: 40 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 41 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 42 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB]
Get: 43 http://deb.debian.org/debian bookworm/main i386 python3-lib2to3 all 3.11.2-3 [76.3 kB]
Get: 44 http://deb.debian.org/debian bookworm/main i386 python3-distutils all 3.11.2-3 [131 kB]
Get: 45 http://deb.debian.org/debian bookworm/main i386 dh-python all 5.20230130 [104 kB]
Get: 46 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB]
Get: 47 http://deb.debian.org/debian bookworm/main i386 libsasl2-modules-db i386 2.1.28+dfsg-10 [21.4 kB]
Get: 48 http://deb.debian.org/debian bookworm/main i386 libsasl2-2 i386 2.1.28+dfsg-10 [62.7 kB]
Get: 49 http://deb.debian.org/debian bookworm/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5 [196 kB]
Get: 50 http://deb.debian.org/debian bookworm/main i386 libnghttp2-14 i386 1.52.0-1 [79.8 kB]
Get: 51 http://deb.debian.org/debian bookworm/main i386 libpsl5 i386 0.21.2-1 [59.3 kB]
Get: 52 http://deb.debian.org/debian bookworm/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB]
Get: 53 http://deb.debian.org/debian bookworm/main i386 libssh2-1 i386 1.10.0-3+b1 [187 kB]
Get: 54 http://deb.debian.org/debian bookworm/main i386 libcurl3-gnutls i386 7.88.1-9 [412 kB]
Get: 55 http://deb.debian.org/debian bookworm/main i386 libdeflate0 i386 1.14-1 [57.5 kB]
Get: 56 http://deb.debian.org/debian bookworm/main i386 libexpat1-dev i386 2.5.0-1 [158 kB]
Get: 57 http://deb.debian.org/debian bookworm/main i386 libhtscodecs2 i386 1.3.0-4 [67.4 kB]
Get: 58 http://deb.debian.org/debian bookworm/main i386 libhts3 i386 1.16+ds-3 [469 kB]
Get: 59 http://deb.debian.org/debian bookworm/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 60 http://deb.debian.org/debian bookworm/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get: 61 http://deb.debian.org/debian bookworm/main i386 libjs-sphinxdoc all 5.3.0-4 [130 kB]
Get: 62 http://deb.debian.org/debian bookworm/main i386 libpython3.11 i386 3.11.2-6 [2013 kB]
Get: 63 http://deb.debian.org/debian bookworm/main i386 zlib1g-dev i386 1:1.2.13.dfsg-1 [913 kB]
Get: 64 http://deb.debian.org/debian bookworm/main i386 libpython3.11-dev i386 3.11.2-6 [4906 kB]
Get: 65 http://deb.debian.org/debian bookworm/main i386 libpython3-dev i386 3.11.2-1+b1 [9580 B]
Get: 66 http://deb.debian.org/debian bookworm/main i386 libpython3-all-dev i386 3.11.2-1+b1 [1068 B]
Get: 67 http://deb.debian.org/debian bookworm/main i386 python3-all i386 3.11.2-1+b1 [1056 B]
Get: 68 http://deb.debian.org/debian bookworm/main i386 python3.11-dev i386 3.11.2-6 [615 kB]
Get: 69 http://deb.debian.org/debian bookworm/main i386 python3-dev i386 3.11.2-1+b1 [26.2 kB]
Get: 70 http://deb.debian.org/debian bookworm/main i386 python3-all-dev i386 3.11.2-1+b1 [1072 B]
Get: 71 http://deb.debian.org/debian bookworm/main i386 python3-attr all 22.2.0-1 [65.4 kB]
Get: 72 http://deb.debian.org/debian bookworm/main i386 python3-colorama all 0.4.6-2 [36.8 kB]
Get: 73 http://deb.debian.org/debian bookworm/main i386 python3-iniconfig all 1.1.1-2 [6396 B]
Get: 74 http://deb.debian.org/debian bookworm/main i386 python3-markupsafe i386 2.1.2-1+b1 [13.3 kB]
Get: 75 http://deb.debian.org/debian bookworm/main i386 python3-jinja2 all 3.1.2-1 [119 kB]
Get: 76 http://deb.debian.org/debian bookworm/main i386 python3-loguru all 0.6.0-3 [53.7 kB]
Get: 77 http://deb.debian.org/debian bookworm/main i386 python3-more-itertools all 8.10.0-2 [53.0 kB]
Get: 78 http://deb.debian.org/debian bookworm/main i386 python3-packaging all 23.0-1 [32.5 kB]
Get: 79 http://deb.debian.org/debian bookworm/main i386 python3-pkg-resources all 66.1.1-1 [296 kB]
Get: 80 http://deb.debian.org/debian bookworm/main i386 python3-pluggy all 1.0.0+repack-1 [19.7 kB]
Get: 81 http://deb.debian.org/debian bookworm/main i386 python3-pokrok all 0.2.0-4 [11.1 kB]
Get: 82 http://deb.debian.org/debian bookworm/main i386 python3-py all 1.11.0-1 [89.2 kB]
Get: 83 http://deb.debian.org/debian bookworm/main i386 python3-pysam i386 0.20.0+ds-3+b1 [1708 kB]
Get: 84 http://deb.debian.org/debian bookworm/main i386 python3-pytest all 7.2.1-2 [236 kB]
Get: 85 http://deb.debian.org/debian bookworm/main i386 python3-setuptools all 66.1.1-1 [521 kB]
Get: 86 http://deb.debian.org/debian bookworm/main i386 python3-typing-extensions all 4.4.0-1 [45.2 kB]
Get: 87 http://deb.debian.org/debian bookworm/main i386 python3-setuptools-scm all 7.1.0-3 [42.6 kB]
Get: 88 http://deb.debian.org/debian bookworm/main i386 python3-wheel all 0.38.4-2 [30.8 kB]
Get: 89 http://deb.debian.org/debian bookworm/main i386 python3-xphyle all 4.4.1-3 [51.2 kB]
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Setting up libpython3-stdlib:i386 (3.11.2-1+b1) ...
Setting up python3.11 (3.11.2-6) ...
Setting up libhts3:i386 (1.16+ds-3) ...
Setting up libpython3.11:i386 (3.11.2-6) ...
Setting up debhelper (13.11.4) ...
Setting up python3 (3.11.2-1+b1) ...
Setting up python3-markupsafe (2.1.2-1+b1) ...
Setting up python3-jinja2 (3.1.2-1) ...
Setting up python3-packaging (23.0-1) ...
Setting up libpython3.11-dev:i386 (3.11.2-6) ...
Setting up cython3 (0.29.32-2+b1) ...
Setting up python3-typing-extensions (4.4.0-1) ...
Setting up python3-pluggy (1.0.0+repack-1) ...
Setting up python3-lib2to3 (3.11.2-3) ...
Setting up python3-pkg-resources (66.1.1-1) ...
Setting up python3-distutils (3.11.2-3) ...
Setting up dh-python (5.20230130) ...
Setting up python3-more-itertools (8.10.0-2) ...
Setting up python3-iniconfig (1.1.1-2) ...
Setting up python3-attr (22.2.0-1) ...
Setting up python3-pokrok (0.2.0-4) ...
Setting up python3-pysam (0.20.0+ds-3+b1) ...
Setting up libpython3-dev:i386 (3.11.2-1+b1) ...
Setting up python3-setuptools (66.1.1-1) ...
Setting up python3-py (1.11.0-1) ...
Setting up python3-colorama (0.4.6-2) ...
Setting up python3.11-dev (3.11.2-6) ...
Setting up python3-pytest (7.2.1-2) ...
Setting up python3-loguru (0.6.0-3) ...
Setting up python3-all (3.11.2-1+b1) ...
Setting up python3-wheel (0.38.4-2) ...
Setting up python3-setuptools-scm (7.1.0-3) ...
Setting up libpython3-all-dev:i386 (3.11.2-1+b1) ...
Setting up python3-dev (3.11.2-1+b1) ...
Setting up python3-xphyle (4.4.1-3) ...
Setting up python3-all-dev (3.11.2-1+b1) ...
Processing triggers for libc-bin (2.36-9) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/atropos-1.1.31+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../atropos_1.1.31+dfsg-3_source.changes
dpkg-buildpackage: info: source package atropos
dpkg-buildpackage: info: source version 1.1.31+dfsg-3
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Nilesh Patra <nilesh@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/atropos-1.1.31+dfsg'
dh_auto_clean
I: pybuild base:240: python3.11 setup.py clean
/usr/lib/python3/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
running clean
removing '/build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build' (and everything under it)
'build/bdist.linux-i386' does not exist -- can't clean it
'build/scripts-3.11' does not exist -- can't clean it
rm -rf .pytest_cache
rm -rf atropos.egg-info
rm -f atropos/align/_align.c atropos/commands/trim/_qualtrim.c atropos/io/_seqio.c
make[1]: Leaving directory '/build/atropos-1.1.31+dfsg'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --with python3 --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:240: python3.11 setup.py config
/usr/lib/python3/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
running config
dh_auto_build -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py build
/usr/lib/python3/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
running build
running build_py
creating /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos
copying atropos/_version.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos
copying atropos/__init__.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos
creating /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests
copying tests/test_filters.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests
copying tests/test_commands.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests
copying tests/test_xopen.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests
copying tests/test_seqio.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests
copying tests/test_qualtrim.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests
copying tests/test_align.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests
copying tests/test_trim.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests
copying tests/test_modifiers.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests
copying tests/test_multicore.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests
copying tests/test_colorspace.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests
copying tests/test_atropos.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests
copying tests/test_adapters.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests
copying tests/test_paired.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests
copying tests/__init__.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests
copying tests/utils.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests
creating /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/align
copying atropos/align/__init__.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/align
creating /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/adapters
copying atropos/adapters/__init__.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/adapters
creating /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/util
copying atropos/util/__init__.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/util
copying atropos/util/colorspace.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/util
creating /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/io
copying atropos/io/compression.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/io
copying atropos/io/progress.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/io
copying atropos/io/seqio.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/io
copying atropos/io/__init__.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/io
creating /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands
copying atropos/commands/multicore.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands
copying atropos/commands/stats.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands
copying atropos/commands/base.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands
copying atropos/commands/legacy_report.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands
copying atropos/commands/__init__.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands
copying atropos/commands/cli.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands
copying atropos/commands/reports.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands
creating /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim
copying atropos/commands/trim/multicore.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim
copying atropos/commands/trim/modifiers.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim
copying atropos/commands/trim/filters.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim
copying atropos/commands/trim/__init__.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim
copying atropos/commands/trim/cli.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim
copying atropos/commands/trim/writers.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim
copying atropos/commands/trim/reports.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim
copying atropos/commands/trim/qualtrim.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim
creating /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/qc
copying atropos/commands/qc/__init__.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/qc
copying atropos/commands/qc/cli.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/qc
copying atropos/commands/qc/reports.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/qc
creating /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/detect
copying atropos/commands/detect/__init__.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/detect
copying atropos/commands/detect/cli.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/detect
copying atropos/commands/detect/reports.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/detect
creating /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/error
copying atropos/commands/error/__init__.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/error
copying atropos/commands/error/cli.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/error
copying atropos/commands/error/reports.py -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/error
copying atropos/adapters/sequencing_adapters.fa -> /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/adapters
UPDATING /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/_version.py
set /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/_version.py to '1.1.31'
running build_ext
/build/atropos-1.1.31+dfsg/setup.py:82: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead.
if LooseVersion(cyversion) < LooseVersion(MIN_CYTHON_VERSION):
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/atropos-1.1.31+dfsg/atropos/align/_align.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/atropos-1.1.31+dfsg/atropos/commands/trim/_qualtrim.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/atropos-1.1.31+dfsg/atropos/io/_seqio.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling atropos/align/_align.pyx because it changed.
Compiling atropos/commands/trim/_qualtrim.pyx because it changed.
Compiling atropos/io/_seqio.pyx because it changed.
[1/3] Cythonizing atropos/align/_align.pyx
[2/3] Cythonizing atropos/commands/trim/_qualtrim.pyx
[3/3] Cythonizing atropos/io/_seqio.pyx
building 'atropos.align._align' extension
creating build
creating build/temp.linux-i386-cpython-311
creating build/temp.linux-i386-cpython-311/atropos
creating build/temp.linux-i386-cpython-311/atropos/align
i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/atropos-1.1.31+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c atropos/align/_align.c -o build/temp.linux-i386-cpython-311/atropos/align/_align.o
i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/atropos-1.1.31+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-cpython-311/atropos/align/_align.o -L/usr/lib/i386-linux-gnu -o /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/align/_align.cpython-311-i386-linux-gnu.so
building 'atropos.commands.trim._qualtrim' extension
creating build/temp.linux-i386-cpython-311/atropos/commands
creating build/temp.linux-i386-cpython-311/atropos/commands/trim
i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/atropos-1.1.31+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c atropos/commands/trim/_qualtrim.c -o build/temp.linux-i386-cpython-311/atropos/commands/trim/_qualtrim.o
i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/atropos-1.1.31+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-cpython-311/atropos/commands/trim/_qualtrim.o -L/usr/lib/i386-linux-gnu -o /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/_qualtrim.cpython-311-i386-linux-gnu.so
building 'atropos.io._seqio' extension
creating build/temp.linux-i386-cpython-311/atropos/io
i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/atropos-1.1.31+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c atropos/io/_seqio.c -o build/temp.linux-i386-cpython-311/atropos/io/_seqio.o
i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/atropos-1.1.31+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-cpython-311/atropos/io/_seqio.o -L/usr/lib/i386-linux-gnu -o /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/io/_seqio.cpython-311-i386-linux-gnu.so
running build_scripts
creating build/scripts-3.11
copying and adjusting bin/atropos -> build/scripts-3.11
changing mode of build/scripts-3.11/atropos from 644 to 755
debian/rules override_dh_auto_test
make[1]: Entering directory '/build/atropos-1.1.31+dfsg'
\
dh_auto_test -- --before-test="ln -s /build/atropos-1.1.31+dfsg/tests/cut {build_dir}/tests && ln -s /build/atropos-1.1.31+dfsg/tests/data {build_dir}/tests"
I: pybuild pybuild:307: ln -s /build/atropos-1.1.31+dfsg/tests/cut /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests && ln -s /build/atropos-1.1.31+dfsg/tests/data /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests
I: pybuild base:240: cd /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build; python3.11 -m pytest tests
============================= test session starts ==============================
platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack
rootdir: /build/atropos-1.1.31+dfsg, configfile: pytest.ini
collected 224 items
tests/test_adapters.py ........ [ 3%]
tests/test_align.py ................ [ 10%]
tests/test_atropos.py .................................................. [ 33%]
............................s [ 45%]
tests/test_colorspace.py ................. [ 53%]
tests/test_commands.py . [ 54%]
tests/test_filters.py .. [ 54%]
tests/test_modifiers.py .................... [ 63%]
tests/test_multicore.py ..... [ 66%]
tests/test_paired.py .................................. [ 81%]
tests/test_qualtrim.py . [ 81%]
tests/test_seqio.py ................................... [ 97%]
tests/test_trim.py .. [ 98%]
tests/test_xopen.py .... [100%]
=============================== warnings summary ===============================
tests/test_paired.py:612
/build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/test_paired.py:612: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
@pytest.mark.timeout(10)
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_sequence_reader
/usr/lib/python3/dist-packages/_pytest/fixtures.py:901: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release.
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_sequence_reader is using nose-specific method: `setup(self)`
To remove this warning, rename it to `setup_method(self)`
See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose
fixture_result = next(generator)
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_sequence_reader
/usr/lib/python3/dist-packages/_pytest/fixtures.py:917: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release.
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_sequence_reader is using nose-specific method: `teardown(self)`
To remove this warning, rename it to `teardown_method(self)`
See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose
next(it)
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_autodetect_fasta_format
/usr/lib/python3/dist-packages/_pytest/fixtures.py:901: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release.
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_autodetect_fasta_format is using nose-specific method: `setup(self)`
To remove this warning, rename it to `setup_method(self)`
See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose
fixture_result = next(generator)
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_autodetect_fasta_format
/usr/lib/python3/dist-packages/_pytest/fixtures.py:917: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release.
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_autodetect_fasta_format is using nose-specific method: `teardown(self)`
To remove this warning, rename it to `teardown_method(self)`
See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose
next(it)
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_write_qualities_to_fasta
/usr/lib/python3/dist-packages/_pytest/fixtures.py:901: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release.
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_write_qualities_to_fasta is using nose-specific method: `setup(self)`
To remove this warning, rename it to `setup_method(self)`
See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose
fixture_result = next(generator)
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_write_qualities_to_fasta
/usr/lib/python3/dist-packages/_pytest/fixtures.py:917: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release.
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_write_qualities_to_fasta is using nose-specific method: `teardown(self)`
To remove this warning, rename it to `teardown_method(self)`
See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose
next(it)
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_autodetect_fastq_format
/usr/lib/python3/dist-packages/_pytest/fixtures.py:901: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release.
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_autodetect_fastq_format is using nose-specific method: `setup(self)`
To remove this warning, rename it to `setup_method(self)`
See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose
fixture_result = next(generator)
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_autodetect_fastq_format
/usr/lib/python3/dist-packages/_pytest/fixtures.py:917: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release.
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_autodetect_fastq_format is using nose-specific method: `teardown(self)`
To remove this warning, rename it to `teardown_method(self)`
See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose
next(it)
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_fastq_qualities_missing
/usr/lib/python3/dist-packages/_pytest/fixtures.py:901: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release.
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_fastq_qualities_missing is using nose-specific method: `setup(self)`
To remove this warning, rename it to `setup_method(self)`
See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose
fixture_result = next(generator)
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_fastq_qualities_missing
/usr/lib/python3/dist-packages/_pytest/fixtures.py:917: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release.
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestSeqioOpen::test_fastq_qualities_missing is using nose-specific method: `teardown(self)`
To remove this warning, rename it to `teardown_method(self)`
See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose
next(it)
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test
/usr/lib/python3/dist-packages/_pytest/fixtures.py:901: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release.
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test is using nose-specific method: `setup(self)`
To remove this warning, rename it to `setup_method(self)`
See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose
fixture_result = next(generator)
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test
/usr/lib/python3/dist-packages/_pytest/fixtures.py:917: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release.
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test is using nose-specific method: `teardown(self)`
To remove this warning, rename it to `teardown_method(self)`
See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose
next(it)
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test_linelength
/usr/lib/python3/dist-packages/_pytest/fixtures.py:901: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release.
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test_linelength is using nose-specific method: `setup(self)`
To remove this warning, rename it to `setup_method(self)`
See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose
fixture_result = next(generator)
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test_linelength
/usr/lib/python3/dist-packages/_pytest/fixtures.py:917: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release.
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test_linelength is using nose-specific method: `teardown(self)`
To remove this warning, rename it to `teardown_method(self)`
See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose
next(it)
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test_write_sequence_object
/usr/lib/python3/dist-packages/_pytest/fixtures.py:901: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release.
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test_write_sequence_object is using nose-specific method: `setup(self)`
To remove this warning, rename it to `setup_method(self)`
See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose
fixture_result = next(generator)
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test_write_sequence_object
/usr/lib/python3/dist-packages/_pytest/fixtures.py:917: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release.
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test_write_sequence_object is using nose-specific method: `teardown(self)`
To remove this warning, rename it to `teardown_method(self)`
See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose
next(it)
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test_write_zero_length_sequence
/usr/lib/python3/dist-packages/_pytest/fixtures.py:901: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release.
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test_write_zero_length_sequence is using nose-specific method: `setup(self)`
To remove this warning, rename it to `setup_method(self)`
See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose
fixture_result = next(generator)
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test_write_zero_length_sequence
/usr/lib/python3/dist-packages/_pytest/fixtures.py:917: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release.
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastaWriter::test_write_zero_length_sequence is using nose-specific method: `teardown(self)`
To remove this warning, rename it to `teardown_method(self)`
See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose
next(it)
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastqWriter::test
/usr/lib/python3/dist-packages/_pytest/fixtures.py:901: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release.
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastqWriter::test is using nose-specific method: `setup(self)`
To remove this warning, rename it to `setup_method(self)`
See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose
fixture_result = next(generator)
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastqWriter::test
/usr/lib/python3/dist-packages/_pytest/fixtures.py:917: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release.
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastqWriter::test is using nose-specific method: `teardown(self)`
To remove this warning, rename it to `teardown_method(self)`
See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose
next(it)
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastqWriter::test_twoheaders
/usr/lib/python3/dist-packages/_pytest/fixtures.py:901: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release.
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastqWriter::test_twoheaders is using nose-specific method: `setup(self)`
To remove this warning, rename it to `setup_method(self)`
See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose
fixture_result = next(generator)
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastqWriter::test_twoheaders
/usr/lib/python3/dist-packages/_pytest/fixtures.py:917: PytestRemovedIn8Warning: Support for nose tests is deprecated and will be removed in a future release.
.pybuild/cpython3_3.11/build/tests/test_seqio.py::TestFastqWriter::test_twoheaders is using nose-specific method: `teardown(self)`
To remove this warning, rename it to `teardown_method(self)`
See docs: https://docs.pytest.org/en/stable/deprecations.html#support-for-tests-written-for-nose
next(it)
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================= 223 passed, 1 skipped, 23 warnings in 38.28s =================
make[1]: Leaving directory '/build/atropos-1.1.31+dfsg'
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
dh_auto_install --destdir=debian/atropos/ -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/atropos-1.1.31+dfsg/debian/atropos
/usr/lib/python3/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
UPDATING /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/_version.py
set /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/_version.py to '1.1.31'
running build_ext
/build/atropos-1.1.31+dfsg/setup.py:82: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead.
if LooseVersion(cyversion) < LooseVersion(MIN_CYTHON_VERSION):
running build_scripts
running install_lib
creating /build/atropos-1.1.31+dfsg/debian/atropos/usr
creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib
creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11
creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages
creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos
creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/align
creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/align/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/align/__pycache__/__init__.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/align/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/align/__init__.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/align
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/align/_align.cpython-311-i386-linux-gnu.so -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/align
creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/__pycache__/_version.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/__pycache__/__init__.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/_version.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos
creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/adapters
creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/adapters/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/adapters/__pycache__/__init__.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/adapters/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/adapters/sequencing_adapters.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/adapters
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/adapters/__init__.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/adapters
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/__init__.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos
creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/util
creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/util/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/util/__pycache__/colorspace.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/util/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/util/__pycache__/__init__.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/util/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/util/__init__.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/util
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/util/colorspace.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/util
creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/io
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/io/compression.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/io
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/io/progress.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/io
creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/io/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/io/__pycache__/seqio.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/io/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/io/__pycache__/compression.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/io/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/io/__pycache__/__init__.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/io/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/io/seqio.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/io
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/io/__init__.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/io
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/io/_seqio.cpython-311-i386-linux-gnu.so -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/io
creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/multicore.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/stats.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands
creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/__pycache__/multicore.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/__pycache__/stats.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/__pycache__/reports.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/__pycache__/base.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/__pycache__/cli.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/__pycache__/legacy_report.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/__pycache__/__init__.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/__pycache__
creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/multicore.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim
creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/__pycache__/writers.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/__pycache__/multicore.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/__pycache__/modifiers.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/__pycache__/reports.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/__pycache__/cli.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/__pycache__/filters.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/__pycache__/__init__.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/__pycache__/qualtrim.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/modifiers.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/filters.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/__init__.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/_qualtrim.cpython-311-i386-linux-gnu.so -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/cli.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/writers.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/reports.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/trim/qualtrim.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/base.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/legacy_report.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/__init__.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands
creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/qc
creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/qc/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/qc/__pycache__/cli.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/qc/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/qc/__pycache__/__init__.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/qc/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/qc/__init__.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/qc
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/qc/cli.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/qc
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/qc/reports.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/qc
creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/detect
creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/detect/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/detect/__pycache__/cli.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/detect/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/detect/__pycache__/__init__.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/detect/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/detect/__init__.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/detect
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/detect/cli.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/detect
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/detect/reports.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/detect
creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/error
creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/error/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/error/__pycache__/cli.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/error/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/error/__pycache__/__init__.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/error/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/error/__init__.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/error
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/error/cli.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/error
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/error/reports.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/error
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/cli.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/atropos/commands/reports.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands
creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/test_filters.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/test_commands.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/test_xopen.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests
creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/tooshort.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/illumina64.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/bad_bases.fq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/paired.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/overlapb.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/no_indels.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/paired_bis_insert.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/adapter.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/trimN5.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/issue46.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/anchored-back.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/plus.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/small.fastq.bz2 -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/small.fastq.gz -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/lengths.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/solid5p.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/trimN3.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/insert.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/anywhere_repeat.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/suffix-adapter.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/rest.txt -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/interleaved.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/E3M.qual -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/solid5p.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/small.myownextension -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/big.1.fq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/lowq.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/withplus.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/paired_bis_insert.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/solid.csfasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/tooshort.noprimer.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/paired_bis_adapter.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/multiblock.fastq.gz -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/linked.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/454.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/restfront.txt -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/wildcard.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/lowqual.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/s_1_sequence.txt.gz -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/wildcard_adapter.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/maxn.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/illumina5.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/twoadapters.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/polya.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/example.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/solid.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/illumina.fastq.gz -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/sra.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/simple.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/small.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/anchored_no_indels.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/issue68.2.fq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/back_repeat.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/highq.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/anchored.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/simple.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/empty.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/insert.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/small.fastq.xz -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/wildcardN.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/solid.qual -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/solid.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/E3M.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/rest.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/issue68.1.fq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/overlapa.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/big.2.fq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/toolong.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/dos.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/paired_bis_adapter.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/paired.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/back_repeat.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/prefix-adapter.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/data/nextseq.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/data
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/test_seqio.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests
creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__pycache__/test_atropos.cpython-311-pytest-7.2.1.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__pycache__/test_colorspace.cpython-311-pytest-7.2.1.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__pycache__/test_seqio.cpython-311-pytest-7.2.1.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__pycache__/test_xopen.cpython-311-pytest-7.2.1.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__pycache__/test_modifiers.cpython-311-pytest-7.2.1.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__pycache__/utils.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__pycache__/test_adapters.cpython-311-pytest-7.2.1.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__pycache__/test_multicore.cpython-311-pytest-7.2.1.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__pycache__/test_qualtrim.cpython-311-pytest-7.2.1.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__pycache__/test_filters.cpython-311-pytest-7.2.1.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__pycache__/__init__.cpython-311.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__pycache__/test_commands.cpython-311-pytest-7.2.1.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__pycache__/test_align.cpython-311-pytest-7.2.1.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__pycache__/test_paired.cpython-311-pytest-7.2.1.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__pycache__/test_trim.cpython-311-pytest-7.2.1.pyc -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__pycache__
creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/solidmaq.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired_insert.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/maxn0.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/wildcard_adapter_anywhere.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/unconditional-both.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/illumina64.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-untrimmed.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired_bis1_insert.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/overlapb.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-filterboth_adapter.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/no_indels.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/suffix.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-untrimmed.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/trimN5.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/issue46.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/anchored-back.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired_adapter.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/plus.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/small_mincut1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/solid5p.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/trimN3.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/solidbfast.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/solid5p-anchored.notrim.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/solid5p-anchored.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/insert.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/anywhere_repeat.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/twoadapters.second.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-trimmed.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired.m14.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/interleaved.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/solid5p.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/restfront.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-trimmed.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/lowq.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/maxn0.2.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/pairedu.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/solid5p-anchored.notrim.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-filterboth.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-filterboth_insert.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-filterboth_insert.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired_bis1_adapter.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-too-short.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/linked.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/454.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/unconditional-front.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/small.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/stripped.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/solidqual.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired_insert.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/empty.fastq.gz -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/pairedq.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-too-short.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/wildcard.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/small_mincut2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired_bis2_adapter.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/illumina.info.txt -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/small.untrimmed.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/lowqual.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/unconditional-back.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/wildcard_adapter.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/lowercase.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/discard.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/solid5p-anchored.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/maxn0.4.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/illumina5.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/twoadapters.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/anchored_no_indels_wildcard.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/polya.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired_bis2_insert.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/example.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/solid.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/small_mincut3.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-filterboth_adapter.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/sra.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/twoadapters.first.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/small.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/anchored_no_indels.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/pairedu.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/issue68.2.fq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/maxn2.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/discard-untrimmed.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/s_1_sequence.txt -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/back_repeat.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/highq.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/illumina.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/anchored.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired_adapter.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/no-trim.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/empty.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/maxn1.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-m27.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/insert.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/twoadapters.unknown.fasta -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-onlyA.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-separate.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/wildcardN.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/illumina5.info.txt -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-onlyA.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/solid.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired_bis1_adapter.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/examplefront.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/rest.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/issue68.1.fq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/small.trimmed.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired.m14.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/overlapa.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/dos.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired_bis1_insert.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/back_repeat.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-filterboth.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-m27.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/SRR2040662_trimmed.fq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/minlen.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/maxlen.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired_bis2_insert.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/solid-no-zerocap.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/nextseq.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired_bis2_adapter.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/paired-separate.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/minlen.noprimer.fa -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/cut/pairedq.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/cut
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/test_qualtrim.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/test_align.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/test_trim.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/test_modifiers.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/test_multicore.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/test_colorspace.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/test_atropos.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/test_adapters.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/test_paired.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/__init__.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests
creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/testtmp
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/testtmp/tmp1-out.1.0.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/testtmp
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/testtmp/tmp1-out.1.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/testtmp
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/testtmp/tmp1-out.1.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/testtmp
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/testtmp/tmp2-out.2.2.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/testtmp
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/testtmp/tmp2-out.2.1.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/testtmp
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/testtmp/truncated.gz -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/testtmp
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/testtmp/tmp2-out.2.0.fastq -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/testtmp
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/tests/utils.py -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests
copying /build/atropos-1.1.31+dfsg/.pybuild/cpython3_3.11/build/.adapters -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/align/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/_version.py to _version.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/adapters/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/util/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/util/colorspace.py to colorspace.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/io/compression.py to compression.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/io/progress.py to progress.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/io/seqio.py to seqio.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/io/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/multicore.py to multicore.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/stats.py to stats.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/multicore.py to multicore.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/modifiers.py to modifiers.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/filters.py to filters.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/cli.py to cli.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/writers.py to writers.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/reports.py to reports.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/trim/qualtrim.py to qualtrim.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/base.py to base.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/legacy_report.py to legacy_report.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/qc/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/qc/cli.py to cli.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/qc/reports.py to reports.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/detect/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/detect/cli.py to cli.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/detect/reports.py to reports.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/error/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/error/cli.py to cli.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/error/reports.py to reports.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/cli.py to cli.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos/commands/reports.py to reports.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/test_filters.py to test_filters.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/test_commands.py to test_commands.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/test_xopen.py to test_xopen.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/test_seqio.py to test_seqio.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/test_qualtrim.py to test_qualtrim.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/test_align.py to test_align.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/test_trim.py to test_trim.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/test_modifiers.py to test_modifiers.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/test_multicore.py to test_multicore.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/test_colorspace.py to test_colorspace.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/test_atropos.py to test_atropos.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/test_adapters.py to test_adapters.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/test_paired.py to test_paired.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/__init__.py to __init__.cpython-311.pyc
byte-compiling /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/tests/utils.py to utils.cpython-311.pyc
running install_egg_info
running egg_info
creating atropos.egg-info
writing atropos.egg-info/PKG-INFO
writing dependency_links to atropos.egg-info/dependency_links.txt
writing requirements to atropos.egg-info/requires.txt
writing top-level names to atropos.egg-info/top_level.txt
writing manifest file 'atropos.egg-info/SOURCES.txt'
reading manifest file 'atropos.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'README.rst'
warning: no files found matching 'LICENSE.txt'
warning: no files found matching 'atropos/report/templates/*'
adding license file 'LICENSE'
writing manifest file 'atropos.egg-info/SOURCES.txt'
Copying atropos.egg-info to /build/atropos-1.1.31+dfsg/debian/atropos/usr/lib/python3.11/dist-packages/atropos-1.1.31.egg-info
Skipping SOURCES.txt
running install_scripts
creating /build/atropos-1.1.31+dfsg/debian/atropos/usr/bin
copying build/scripts-3.11/atropos -> /build/atropos-1.1.31+dfsg/debian/atropos/usr/bin
changing mode of /build/atropos-1.1.31+dfsg/debian/atropos/usr/bin/atropos to 755
debian/rules override_dh_install
make[1]: Entering directory '/build/atropos-1.1.31+dfsg'
dh_install
find debian -type d -name __pycache__ | xargs rm -rf
find debian -type d -name tests | xargs rm -rf
find debian -type f -name .adapters -delete
make[1]: Leaving directory '/build/atropos-1.1.31+dfsg'
dh_installdocs -O--buildsystem=pybuild
dh_installchangelogs -O--buildsystem=pybuild
dh_installman -O--buildsystem=pybuild
dh_python3 -O--buildsystem=pybuild
dh_installsystemduser -O--buildsystem=pybuild
dh_perl -O--buildsystem=pybuild
dh_link -O--buildsystem=pybuild
dh_strip_nondeterminism -O--buildsystem=pybuild
dh_compress -O--buildsystem=pybuild
dh_fixperms -O--buildsystem=pybuild
dh_missing -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -O--buildsystem=pybuild
dh_gencontrol -O--buildsystem=pybuild
dh_md5sums -O--buildsystem=pybuild
dh_builddeb -O--buildsystem=pybuild
dpkg-deb: building package 'atropos' in '../atropos_1.1.31+dfsg-3_i386.deb'.
dpkg-deb: building package 'atropos-dbgsym' in '../atropos-dbgsym_1.1.31+dfsg-3_i386.deb'.
dpkg-genbuildinfo --build=binary -O../atropos_1.1.31+dfsg-3_i386.buildinfo
dpkg-genchanges --build=binary -O../atropos_1.1.31+dfsg-3_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/2584 and its subdirectories
I: Current time: Sun May 7 23:27:50 -12 2023
I: pbuilder-time-stamp: 1683545270