I: pbuilder: network access will be disabled during build
I: Current time: Mon May 20 13:32:53 -12 2024
I: pbuilder-time-stamp: 1716255173
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [examl_3.0.22-3.dsc]
I: copying [./examl_3.0.22.orig.tar.gz]
I: copying [./examl_3.0.22-3.debian.tar.xz]
I: Extracting source
gpgv: Signature made Tue Jan 18 05:42:01 2022 -12
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./examl_3.0.22-3.dsc: no acceptable signature found
dpkg-source: info: extracting examl in examl-3.0.22
dpkg-source: info: unpacking examl_3.0.22.orig.tar.gz
dpkg-source: info: unpacking examl_3.0.22-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying simde
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/91858/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='i386'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16'
DISTRIBUTION='bookworm'
HOME='/root'
HOST_ARCH='i386'
IFS='
'
INVOCATION_ID='439c643f73f74d22ac4e2ce0f16b61d6'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
LD_LIBRARY_PATH='/usr/lib/libeatmydata'
LD_PRELOAD='libeatmydata.so'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='91858'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.kc8NI7Qw/pbuilderrc_ZgBH --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.kc8NI7Qw/b1 --logfile b1/build.log examl_3.0.22-3.dsc'
SUDO_GID='112'
SUDO_UID='107'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://85.184.249.68:3128'
I: uname -a
Linux ionos16-i386 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux
I: ls -l /bin
total 6036
-rwxr-xr-x 1 root root 1408088 Feb 12 2023 bash
-rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2
-rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep
-rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2
-rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover
lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore
-rwxr-xr-x 1 root root 42920 Sep 20 2022 cat
-rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp
-rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod
-rwxr-xr-x 1 root root 79816 Sep 20 2022 chown
-rwxr-xr-x 1 root root 162024 Sep 20 2022 cp
-rwxr-xr-x 1 root root 136916 Jan 5 2023 dash
-rwxr-xr-x 1 root root 137160 Sep 20 2022 date
-rwxr-xr-x 1 root root 100364 Sep 20 2022 dd
-rwxr-xr-x 1 root root 108940 Sep 20 2022 df
-rwxr-xr-x 1 root root 162152 Sep 20 2022 dir
-rwxr-xr-x 1 root root 87760 Mar 22 2023 dmesg
lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname
-rwxr-xr-x 1 root root 38760 Sep 20 2022 echo
-rwxr-xr-x 1 root root 41 Jan 24 2023 egrep
-rwxr-xr-x 1 root root 34664 Sep 20 2022 false
-rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep
-rwxr-xr-x 1 root root 84272 Mar 22 2023 findmnt
-rwsr-xr-x 1 root root 30240 Mar 22 2023 fusermount
-rwxr-xr-x 1 root root 218680 Jan 24 2023 grep
-rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip
-rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe
-rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip
-rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname
-rwxr-xr-x 1 root root 75756 Sep 20 2022 ln
-rwxr-xr-x 1 root root 55600 Mar 22 2023 login
-rwxr-xr-x 1 root root 162152 Sep 20 2022 ls
-rwxr-xr-x 1 root root 214568 Mar 22 2023 lsblk
-rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir
-rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod
-rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp
-rwxr-xr-x 1 root root 63016 Mar 22 2023 more
-rwsr-xr-x 1 root root 58912 Mar 22 2023 mount
-rwxr-xr-x 1 root root 13856 Mar 22 2023 mountpoint
-rwxr-xr-x 1 root root 157932 Sep 20 2022 mv
lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd
lrwxrwxrwx 1 root root 4 Feb 12 2023 rbash -> bash
-rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink
-rwxr-xr-x 1 root root 75720 Sep 20 2022 rm
-rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir
-rwxr-xr-x 1 root root 22308 Nov 2 2022 run-parts
-rwxr-xr-x 1 root root 133224 Jan 5 2023 sed
lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash
-rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep
-rwxr-xr-x 1 root root 87976 Sep 20 2022 stty
-rwsr-xr-x 1 root root 83492 Mar 22 2023 su
-rwxr-xr-x 1 root root 38792 Sep 20 2022 sync
-rwxr-xr-x 1 root root 598456 Apr 6 2023 tar
-rwxr-xr-x 1 root root 13860 Nov 2 2022 tempfile
-rwxr-xr-x 1 root root 120776 Sep 20 2022 touch
-rwxr-xr-x 1 root root 34664 Sep 20 2022 true
-rwxr-xr-x 1 root root 17892 Mar 22 2023 ulockmgr_server
-rwsr-xr-x 1 root root 30236 Mar 22 2023 umount
-rwxr-xr-x 1 root root 38760 Sep 20 2022 uname
-rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress
-rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir
-rwxr-xr-x 1 root root 71216 Mar 22 2023 wdctl
lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat
-rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp
-rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff
-rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep
-rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep
-rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce
-rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep
-rwxr-xr-x 1 root root 2206 Apr 9 2022 zless
-rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore
-rwxr-xr-x 1 root root 4577 Apr 9 2022 znew
I: user script /srv/workspace/pbuilder/91858/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), libopenmpi-dev, libsimde-dev, debhelper
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19604 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on libopenmpi-dev; however:
Package libopenmpi-dev is not installed.
pbuilder-satisfydepends-dummy depends on libsimde-dev; however:
Package libsimde-dev is not installed.
pbuilder-satisfydepends-dummy depends on debhelper; however:
Package debhelper is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran-12{a} groff-base{a} ibverbs-providers{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcbor0.8{a} libdebhelper-perl{a} libedit2{a} libelf1{a} libevent-2.1-7{a} libevent-core-2.1-7{a} libevent-dev{a} libevent-extra-2.1-7{a} libevent-openssl-2.1-7{a} libevent-pthreads-2.1-7{a} libfabric1{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgfortran-12-dev{a} libgfortran5{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libibverbs-dev{a} libibverbs1{a} libicu72{a} libjs-jquery{a} libjs-jquery-ui{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmunge2{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libpciaccess0{a} libpipeline1{a} libpmix-dev{a} libpmix2{a} libpsm-infinipath1{a} librdmacm1{a} libsimde-dev{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxnvctrl0{a} m4{a} man-db{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
curl javascript-common libarchive-cpio-perl libcoarrays-openmpi-dev libmail-sendmail-perl lynx wget xauth
0 packages upgraded, 81 newly installed, 0 to remove and 0 not upgraded.
Need to get 45.2 MB of archives. After unpacking 180 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get: 2 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB]
Get: 3 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB]
Get: 4 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB]
Get: 5 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB]
Get: 6 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB]
Get: 7 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB]
Get: 8 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB]
Get: 9 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB]
Get: 10 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB]
Get: 11 http://deb.debian.org/debian bookworm/main i386 libbsd0 i386 0.11.7-2 [121 kB]
Get: 12 http://deb.debian.org/debian bookworm/main i386 libedit2 i386 3.1-20221030-2 [97.2 kB]
Get: 13 http://deb.debian.org/debian bookworm/main i386 libcbor0.8 i386 0.8.0-2+b1 [29.8 kB]
Get: 14 http://deb.debian.org/debian bookworm/main i386 libfido2-1 i386 1.12.0-2+b1 [87.0 kB]
Get: 15 http://deb.debian.org/debian bookworm/main i386 openssh-client i386 1:9.2p1-2 [1004 kB]
Get: 16 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB]
Get: 17 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB]
Get: 18 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 19 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB]
Get: 20 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB]
Get: 21 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB]
Get: 22 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB]
Get: 23 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 24 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 25 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B]
Get: 26 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 27 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 28 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB]
Get: 29 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB]
Get: 30 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB]
Get: 31 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.1+b3 [720 kB]
Get: 32 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB]
Get: 33 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 34 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 35 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB]
Get: 36 http://deb.debian.org/debian bookworm/main i386 libgfortran5 i386 12.2.0-14 [698 kB]
Get: 37 http://deb.debian.org/debian bookworm/main i386 libgfortran-12-dev i386 12.2.0-14 [761 kB]
Get: 38 http://deb.debian.org/debian bookworm/main i386 gfortran-12 i386 12.2.0-14 [10.5 MB]
Get: 39 http://deb.debian.org/debian bookworm/main i386 libnl-3-200 i386 3.7.0-0.2+b1 [66.2 kB]
Get: 40 http://deb.debian.org/debian bookworm/main i386 libnl-route-3-200 i386 3.7.0-0.2+b1 [196 kB]
Get: 41 http://deb.debian.org/debian bookworm/main i386 libibverbs1 i386 44.0-2 [65.8 kB]
Get: 42 http://deb.debian.org/debian bookworm/main i386 ibverbs-providers i386 44.0-2 [368 kB]
Get: 43 http://deb.debian.org/debian bookworm/main i386 libevent-2.1-7 i386 2.1.12-stable-8 [194 kB]
Get: 44 http://deb.debian.org/debian bookworm/main i386 libevent-core-2.1-7 i386 2.1.12-stable-8 [139 kB]
Get: 45 http://deb.debian.org/debian bookworm/main i386 libevent-extra-2.1-7 i386 2.1.12-stable-8 [112 kB]
Get: 46 http://deb.debian.org/debian bookworm/main i386 libevent-pthreads-2.1-7 i386 2.1.12-stable-8 [53.7 kB]
Get: 47 http://deb.debian.org/debian bookworm/main i386 libevent-openssl-2.1-7 i386 2.1.12-stable-8 [61.5 kB]
Get: 48 http://deb.debian.org/debian bookworm/main i386 libevent-dev i386 2.1.12-stable-8 [325 kB]
Get: 49 http://deb.debian.org/debian bookworm/main i386 libpsm-infinipath1 i386 3.3+20.604758e7-6.2 [177 kB]
Get: 50 http://deb.debian.org/debian bookworm/main i386 librdmacm1 i386 44.0-2 [74.6 kB]
Get: 51 http://deb.debian.org/debian bookworm/main i386 libfabric1 i386 1.17.0-3 [538 kB]
Get: 52 http://deb.debian.org/debian bookworm/main i386 libhwloc15 i386 2.9.0-1 [168 kB]
Get: 53 http://deb.debian.org/debian bookworm/main i386 libnuma1 i386 2.0.16-1 [22.7 kB]
Get: 54 http://deb.debian.org/debian bookworm/main i386 libnuma-dev i386 2.0.16-1 [37.3 kB]
Get: 55 http://deb.debian.org/debian bookworm/main i386 libltdl7 i386 2.4.7-5 [394 kB]
Get: 56 http://deb.debian.org/debian bookworm/main i386 libltdl-dev i386 2.4.7-5 [167 kB]
Get: 57 http://deb.debian.org/debian bookworm/main i386 libhwloc-dev i386 2.9.0-1 [259 kB]
Get: 58 http://deb.debian.org/debian bookworm/main i386 libpciaccess0 i386 0.17-2 [53.4 kB]
Get: 59 http://deb.debian.org/debian bookworm/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB]
Get: 60 http://deb.debian.org/debian bookworm/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB]
Get: 61 http://deb.debian.org/debian bookworm/main i386 libxcb1 i386 1.15-1 [148 kB]
Get: 62 http://deb.debian.org/debian bookworm/main i386 libx11-data all 2:1.8.4-2 [292 kB]
Get: 63 http://deb.debian.org/debian bookworm/main i386 libx11-6 i386 2:1.8.4-2 [782 kB]
Get: 64 http://deb.debian.org/debian bookworm/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB]
Get: 65 http://deb.debian.org/debian bookworm/main i386 libxnvctrl0 i386 525.85.05-1 [13.3 kB]
Get: 66 http://deb.debian.org/debian bookworm/main i386 ocl-icd-libopencl1 i386 2.3.1-1 [45.4 kB]
Get: 67 http://deb.debian.org/debian bookworm/main i386 libhwloc-plugins i386 2.9.0-1 [17.8 kB]
Get: 68 http://deb.debian.org/debian bookworm/main i386 libnl-3-dev i386 3.7.0-0.2+b1 [109 kB]
Get: 69 http://deb.debian.org/debian bookworm/main i386 libnl-route-3-dev i386 3.7.0-0.2+b1 [226 kB]
Get: 70 http://deb.debian.org/debian bookworm/main i386 libibverbs-dev i386 44.0-2 [683 kB]
Get: 71 http://deb.debian.org/debian bookworm/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 72 http://deb.debian.org/debian bookworm/main i386 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get: 73 http://deb.debian.org/debian bookworm/main i386 libmunge2 i386 0.5.15-2 [20.3 kB]
Get: 74 http://deb.debian.org/debian bookworm/main i386 libpmix2 i386 4.2.2-1+b1 [652 kB]
Get: 75 http://deb.debian.org/debian bookworm/main i386 libopenmpi3 i386 4.1.4-3+b1 [2183 kB]
Get: 76 http://deb.debian.org/debian bookworm/main i386 openmpi-common all 4.1.4-3 [167 kB]
Get: 77 http://deb.debian.org/debian bookworm/main i386 zlib1g-dev i386 1:1.2.13.dfsg-1 [913 kB]
Get: 78 http://deb.debian.org/debian bookworm/main i386 libpmix-dev i386 4.2.2-1+b1 [975 kB]
Get: 79 http://deb.debian.org/debian bookworm/main i386 openmpi-bin i386 4.1.4-3+b1 [196 kB]
Get: 80 http://deb.debian.org/debian bookworm/main i386 libopenmpi-dev i386 4.1.4-3+b1 [920 kB]
Get: 81 http://deb.debian.org/debian bookworm/main i386 libsimde-dev all 0.7.4~rc2-2 [377 kB]
Fetched 45.2 MB in 1s (86.7 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sensible-utils.
(Reading database ...
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(Reading database ... 19604 files and directories currently installed.)
Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ...
Unpacking sensible-utils (0.0.17+nmu1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_i386.deb ...
Unpacking libmagic-mgc (1:5.44-3) ...
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-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/examl-3.0.22/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../examl_3.0.22-3_source.changes
dpkg-buildpackage: info: source package examl
dpkg-buildpackage: info: source version 3.0.22-3
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
debian/rules clean
dh clean --sourcedirectory=examl
debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/examl-3.0.22'
for SIMD in ssse3 sse3 sse2 sse mmx; do \
dh_auto_clean -- SFX=-${SIMD} ; \
/usr/bin/make --directory=parser -f Makefile.SSE3.gcc SFX=-${SIMD} clean ; \
done
make[2]: Entering directory '/build/examl-3.0.22/parser'
rm -f *.o parse-examl-ssse3
make[2]: Leaving directory '/build/examl-3.0.22/parser'
make[2]: Entering directory '/build/examl-3.0.22/parser'
rm -f *.o parse-examl-sse3
make[2]: Leaving directory '/build/examl-3.0.22/parser'
make[2]: Entering directory '/build/examl-3.0.22/parser'
rm -f *.o parse-examl-sse2
make[2]: Leaving directory '/build/examl-3.0.22/parser'
make[2]: Entering directory '/build/examl-3.0.22/parser'
rm -f *.o parse-examl-sse
make[2]: Leaving directory '/build/examl-3.0.22/parser'
make[2]: Entering directory '/build/examl-3.0.22/parser'
rm -f *.o parse-examl-mmx
make[2]: Leaving directory '/build/examl-3.0.22/parser'
dh_auto_clean
/usr/bin/make --directory=parser -f Makefile.SSE3.gcc clean
make[2]: Entering directory '/build/examl-3.0.22/parser'
rm -f *.o parse-examl""
make[2]: Leaving directory '/build/examl-3.0.22/parser'
make[1]: Leaving directory '/build/examl-3.0.22'
dh_autoreconf_clean -O--sourcedirectory=examl
dh_clean -O--sourcedirectory=examl
debian/rules binary
dh binary --sourcedirectory=examl
dh_update_autotools_config -O--sourcedirectory=examl
dh_autoreconf -O--sourcedirectory=examl
dh_auto_configure -O--sourcedirectory=examl
debian/rules override_dh_auto_build
make[1]: Entering directory '/build/examl-3.0.22'
dh_auto_build
for SIMD in ssse3 sse3 sse2 sse mmx; do \
/usr/bin/make --directory=examl -f Makefile.AVX.gcc SFX=-${SIMD} CFLAGS="-g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -m${SIMD}" ; \
/usr/bin/make --directory=examl -f Makefile.OMP.AVX.gcc SFX=-${SIMD} CFLAGS="-g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -m${SIMD}" ; \
find . -name '*.o' -delete ; \
done
make[2]: Entering directory '/build/examl-3.0.22/examl'
rm -f *.o examl-ssse3
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c
In function ‘initializePartitions’,
inlined from ‘initializeTree’ at axml.c:2217:3,
inlined from ‘main’ at axml.c:2631:5:
axml.c:2121:40: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
2121 | *modelWeights = (unsigned long*) calloc(tr->NumberOfModels, sizeof(unsigned long));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from axml.c:44:
/usr/include/stdlib.h: In function ‘main’:
/usr/include/stdlib.h:556:14: note: in a call to allocation function ‘calloc’ declared here
556 | extern void *calloc (size_t __nmemb, size_t __size)
| ^~~~~~
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o trash.o trash.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o restartHashTable.o restartHashTable.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o avxLikelihood.o avxLikelihood.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o byteFile.o byteFile.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o partitionAssignment.o partitionAssignment.c
partitionAssignment.c: In function ‘printAssignment’:
partitionAssignment.c:457:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
457 | printf("p: %d\t(%lu,%lu) -> proc %d\n", a.partId, a.offset, a.width , procid);
| ~~^ ~~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c:457:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
457 | printf("p: %d\t(%lu,%lu) -> proc %d\n", a.partId, a.offset, a.width , procid);
| ~~^ ~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c: In function ‘printAssignments’:
partitionAssignment.c:470:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
470 | printf("%d\t%lu\t%lu\t%d\n", i,a.offset, a.width, a.partId);
| ~~^ ~~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c:470:30: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
470 | printf("%d\t%lu\t%lu\t%d\n", i,a.offset, a.width, a.partId);
| ~~^ ~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c: In function ‘printLoad’:
partitionAssignment.c:498:23: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
498 | printf("%d\t%d\t%lu\n", i, numsPerProc[i], sitesPerProc[i]);
| ~~^ ~~~~~~~~~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o communication.o communication.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o quartets.o quartets.c
quartets.c: In function ‘computeQuartets’:
quartets.c:393:31: warning: implicit declaration of function ‘basename’; did you mean ‘rename’? [-Wimplicit-function-declaration]
393 | strcat(quartetFileName, basename(ckp.quartetFileName));
| ^~~~~~~~
| rename
quartets.c:393:31: warning: passing argument 2 of ‘strcat’ makes pointer from integer without a cast [-Wint-conversion]
393 | strcat(quartetFileName, basename(ckp.quartetFileName));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| int
In file included from /usr/include/features.h:489,
from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33,
from /usr/include/limits.h:26,
from /usr/lib/gcc/i686-linux-gnu/12/include/limits.h:203,
from /usr/lib/gcc/i686-linux-gnu/12/include/syslimits.h:7,
from /usr/lib/gcc/i686-linux-gnu/12/include/limits.h:34,
from quartets.c:36:
/usr/include/i386-linux-gnu/bits/string_fortified.h:128:1: note: expected ‘const char * restrict’ but argument is of type ‘int’
128 | __NTH (strcat (char *__restrict __dest, const char *__restrict __src))
| ^~~~~
mpicc -o examl-ssse3 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/build/examl-3.0.22/examl'
make[2]: Entering directory '/build/examl-3.0.22/examl'
mpicc -o examl-OMP-ssse3 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -fopenmp -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/build/examl-3.0.22/examl'
make[2]: Entering directory '/build/examl-3.0.22/examl'
rm -f *.o examl-sse3
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c
In function ‘initializePartitions’,
inlined from ‘initializeTree’ at axml.c:2217:3,
inlined from ‘main’ at axml.c:2631:5:
axml.c:2121:40: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
2121 | *modelWeights = (unsigned long*) calloc(tr->NumberOfModels, sizeof(unsigned long));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from axml.c:44:
/usr/include/stdlib.h: In function ‘main’:
/usr/include/stdlib.h:556:14: note: in a call to allocation function ‘calloc’ declared here
556 | extern void *calloc (size_t __nmemb, size_t __size)
| ^~~~~~
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o trash.o trash.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o restartHashTable.o restartHashTable.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o avxLikelihood.o avxLikelihood.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o byteFile.o byteFile.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o partitionAssignment.o partitionAssignment.c
partitionAssignment.c: In function ‘printAssignment’:
partitionAssignment.c:457:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
457 | printf("p: %d\t(%lu,%lu) -> proc %d\n", a.partId, a.offset, a.width , procid);
| ~~^ ~~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c:457:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
457 | printf("p: %d\t(%lu,%lu) -> proc %d\n", a.partId, a.offset, a.width , procid);
| ~~^ ~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c: In function ‘printAssignments’:
partitionAssignment.c:470:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
470 | printf("%d\t%lu\t%lu\t%d\n", i,a.offset, a.width, a.partId);
| ~~^ ~~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c:470:30: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
470 | printf("%d\t%lu\t%lu\t%d\n", i,a.offset, a.width, a.partId);
| ~~^ ~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c: In function ‘printLoad’:
partitionAssignment.c:498:23: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
498 | printf("%d\t%d\t%lu\n", i, numsPerProc[i], sitesPerProc[i]);
| ~~^ ~~~~~~~~~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o communication.o communication.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o quartets.o quartets.c
quartets.c: In function ‘computeQuartets’:
quartets.c:393:31: warning: implicit declaration of function ‘basename’; did you mean ‘rename’? [-Wimplicit-function-declaration]
393 | strcat(quartetFileName, basename(ckp.quartetFileName));
| ^~~~~~~~
| rename
quartets.c:393:31: warning: passing argument 2 of ‘strcat’ makes pointer from integer without a cast [-Wint-conversion]
393 | strcat(quartetFileName, basename(ckp.quartetFileName));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| int
In file included from /usr/include/features.h:489,
from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33,
from /usr/include/limits.h:26,
from /usr/lib/gcc/i686-linux-gnu/12/include/limits.h:203,
from /usr/lib/gcc/i686-linux-gnu/12/include/syslimits.h:7,
from /usr/lib/gcc/i686-linux-gnu/12/include/limits.h:34,
from quartets.c:36:
/usr/include/i386-linux-gnu/bits/string_fortified.h:128:1: note: expected ‘const char * restrict’ but argument is of type ‘int’
128 | __NTH (strcat (char *__restrict __dest, const char *__restrict __src))
| ^~~~~
mpicc -o examl-sse3 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/build/examl-3.0.22/examl'
make[2]: Entering directory '/build/examl-3.0.22/examl'
mpicc -o examl-OMP-sse3 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -fopenmp -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/build/examl-3.0.22/examl'
make[2]: Entering directory '/build/examl-3.0.22/examl'
rm -f *.o examl-sse2
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c
In function ‘initializePartitions’,
inlined from ‘initializeTree’ at axml.c:2217:3,
inlined from ‘main’ at axml.c:2631:5:
axml.c:2121:40: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
2121 | *modelWeights = (unsigned long*) calloc(tr->NumberOfModels, sizeof(unsigned long));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from axml.c:44:
/usr/include/stdlib.h: In function ‘main’:
/usr/include/stdlib.h:556:14: note: in a call to allocation function ‘calloc’ declared here
556 | extern void *calloc (size_t __nmemb, size_t __size)
| ^~~~~~
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o trash.o trash.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o restartHashTable.o restartHashTable.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o avxLikelihood.o avxLikelihood.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o byteFile.o byteFile.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o partitionAssignment.o partitionAssignment.c
partitionAssignment.c: In function ‘printAssignment’:
partitionAssignment.c:457:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
457 | printf("p: %d\t(%lu,%lu) -> proc %d\n", a.partId, a.offset, a.width , procid);
| ~~^ ~~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c:457:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
457 | printf("p: %d\t(%lu,%lu) -> proc %d\n", a.partId, a.offset, a.width , procid);
| ~~^ ~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c: In function ‘printAssignments’:
partitionAssignment.c:470:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
470 | printf("%d\t%lu\t%lu\t%d\n", i,a.offset, a.width, a.partId);
| ~~^ ~~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c:470:30: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
470 | printf("%d\t%lu\t%lu\t%d\n", i,a.offset, a.width, a.partId);
| ~~^ ~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c: In function ‘printLoad’:
partitionAssignment.c:498:23: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
498 | printf("%d\t%d\t%lu\n", i, numsPerProc[i], sitesPerProc[i]);
| ~~^ ~~~~~~~~~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o communication.o communication.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o quartets.o quartets.c
quartets.c: In function ‘computeQuartets’:
quartets.c:393:31: warning: implicit declaration of function ‘basename’; did you mean ‘rename’? [-Wimplicit-function-declaration]
393 | strcat(quartetFileName, basename(ckp.quartetFileName));
| ^~~~~~~~
| rename
quartets.c:393:31: warning: passing argument 2 of ‘strcat’ makes pointer from integer without a cast [-Wint-conversion]
393 | strcat(quartetFileName, basename(ckp.quartetFileName));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| int
In file included from /usr/include/features.h:489,
from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33,
from /usr/include/limits.h:26,
from /usr/lib/gcc/i686-linux-gnu/12/include/limits.h:203,
from /usr/lib/gcc/i686-linux-gnu/12/include/syslimits.h:7,
from /usr/lib/gcc/i686-linux-gnu/12/include/limits.h:34,
from quartets.c:36:
/usr/include/i386-linux-gnu/bits/string_fortified.h:128:1: note: expected ‘const char * restrict’ but argument is of type ‘int’
128 | __NTH (strcat (char *__restrict __dest, const char *__restrict __src))
| ^~~~~
mpicc -o examl-sse2 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/build/examl-3.0.22/examl'
make[2]: Entering directory '/build/examl-3.0.22/examl'
mpicc -o examl-OMP-sse2 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -fopenmp -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/build/examl-3.0.22/examl'
make[2]: Entering directory '/build/examl-3.0.22/examl'
rm -f *.o examl-sse
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c
In function ‘initializePartitions’,
inlined from ‘initializeTree’ at axml.c:2217:3,
inlined from ‘main’ at axml.c:2631:5:
axml.c:2121:40: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
2121 | *modelWeights = (unsigned long*) calloc(tr->NumberOfModels, sizeof(unsigned long));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from axml.c:44:
/usr/include/stdlib.h: In function ‘main’:
/usr/include/stdlib.h:556:14: note: in a call to allocation function ‘calloc’ declared here
556 | extern void *calloc (size_t __nmemb, size_t __size)
| ^~~~~~
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o trash.o trash.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o restartHashTable.o restartHashTable.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o avxLikelihood.o avxLikelihood.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o byteFile.o byteFile.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o partitionAssignment.o partitionAssignment.c
partitionAssignment.c: In function ‘printAssignment’:
partitionAssignment.c:457:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
457 | printf("p: %d\t(%lu,%lu) -> proc %d\n", a.partId, a.offset, a.width , procid);
| ~~^ ~~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c:457:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
457 | printf("p: %d\t(%lu,%lu) -> proc %d\n", a.partId, a.offset, a.width , procid);
| ~~^ ~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c: In function ‘printAssignments’:
partitionAssignment.c:470:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
470 | printf("%d\t%lu\t%lu\t%d\n", i,a.offset, a.width, a.partId);
| ~~^ ~~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c:470:30: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
470 | printf("%d\t%lu\t%lu\t%d\n", i,a.offset, a.width, a.partId);
| ~~^ ~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c: In function ‘printLoad’:
partitionAssignment.c:498:23: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
498 | printf("%d\t%d\t%lu\n", i, numsPerProc[i], sitesPerProc[i]);
| ~~^ ~~~~~~~~~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o communication.o communication.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o quartets.o quartets.c
quartets.c: In function ‘computeQuartets’:
quartets.c:393:31: warning: implicit declaration of function ‘basename’; did you mean ‘rename’? [-Wimplicit-function-declaration]
393 | strcat(quartetFileName, basename(ckp.quartetFileName));
| ^~~~~~~~
| rename
quartets.c:393:31: warning: passing argument 2 of ‘strcat’ makes pointer from integer without a cast [-Wint-conversion]
393 | strcat(quartetFileName, basename(ckp.quartetFileName));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| int
In file included from /usr/include/features.h:489,
from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33,
from /usr/include/limits.h:26,
from /usr/lib/gcc/i686-linux-gnu/12/include/limits.h:203,
from /usr/lib/gcc/i686-linux-gnu/12/include/syslimits.h:7,
from /usr/lib/gcc/i686-linux-gnu/12/include/limits.h:34,
from quartets.c:36:
/usr/include/i386-linux-gnu/bits/string_fortified.h:128:1: note: expected ‘const char * restrict’ but argument is of type ‘int’
128 | __NTH (strcat (char *__restrict __dest, const char *__restrict __src))
| ^~~~~
mpicc -o examl-sse axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/build/examl-3.0.22/examl'
make[2]: Entering directory '/build/examl-3.0.22/examl'
mpicc -o examl-OMP-sse axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -fopenmp -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/build/examl-3.0.22/examl'
make[2]: Entering directory '/build/examl-3.0.22/examl'
rm -f *.o examl-mmx
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c
In function ‘initializePartitions’,
inlined from ‘initializeTree’ at axml.c:2217:3,
inlined from ‘main’ at axml.c:2631:5:
axml.c:2121:40: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
2121 | *modelWeights = (unsigned long*) calloc(tr->NumberOfModels, sizeof(unsigned long));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from axml.c:44:
/usr/include/stdlib.h: In function ‘main’:
/usr/include/stdlib.h:556:14: note: in a call to allocation function ‘calloc’ declared here
556 | extern void *calloc (size_t __nmemb, size_t __size)
| ^~~~~~
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o trash.o trash.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o restartHashTable.o restartHashTable.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o avxLikelihood.o avxLikelihood.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o byteFile.o byteFile.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o partitionAssignment.o partitionAssignment.c
partitionAssignment.c: In function ‘printAssignment’:
partitionAssignment.c:457:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
457 | printf("p: %d\t(%lu,%lu) -> proc %d\n", a.partId, a.offset, a.width , procid);
| ~~^ ~~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c:457:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
457 | printf("p: %d\t(%lu,%lu) -> proc %d\n", a.partId, a.offset, a.width , procid);
| ~~^ ~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c: In function ‘printAssignments’:
partitionAssignment.c:470:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
470 | printf("%d\t%lu\t%lu\t%d\n", i,a.offset, a.width, a.partId);
| ~~^ ~~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c:470:30: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
470 | printf("%d\t%lu\t%lu\t%d\n", i,a.offset, a.width, a.partId);
| ~~^ ~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c: In function ‘printLoad’:
partitionAssignment.c:498:23: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
498 | printf("%d\t%d\t%lu\n", i, numsPerProc[i], sitesPerProc[i]);
| ~~^ ~~~~~~~~~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o communication.o communication.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o quartets.o quartets.c
quartets.c: In function ‘computeQuartets’:
quartets.c:393:31: warning: implicit declaration of function ‘basename’; did you mean ‘rename’? [-Wimplicit-function-declaration]
393 | strcat(quartetFileName, basename(ckp.quartetFileName));
| ^~~~~~~~
| rename
quartets.c:393:31: warning: passing argument 2 of ‘strcat’ makes pointer from integer without a cast [-Wint-conversion]
393 | strcat(quartetFileName, basename(ckp.quartetFileName));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| int
In file included from /usr/include/features.h:489,
from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33,
from /usr/include/limits.h:26,
from /usr/lib/gcc/i686-linux-gnu/12/include/limits.h:203,
from /usr/lib/gcc/i686-linux-gnu/12/include/syslimits.h:7,
from /usr/lib/gcc/i686-linux-gnu/12/include/limits.h:34,
from quartets.c:36:
/usr/include/i386-linux-gnu/bits/string_fortified.h:128:1: note: expected ‘const char * restrict’ but argument is of type ‘int’
128 | __NTH (strcat (char *__restrict __dest, const char *__restrict __src))
| ^~~~~
mpicc -o examl-mmx axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/build/examl-3.0.22/examl'
make[2]: Entering directory '/build/examl-3.0.22/examl'
mpicc -o examl-OMP-mmx axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -fopenmp -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/build/examl-3.0.22/examl'
for SIMD in sse mmx; do \
/usr/bin/make --directory=parser -f Makefile.SSE3.gcc SFX=-${SIMD} CFLAGS="-g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -m${SIMD}" ; \
find . -name '*.o' -delete ; \
done
make[2]: Entering directory '/build/examl-3.0.22/parser'
rm -f *.o parse-examl-sse
gcc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c
gcc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o parsePartitions.o parsePartitions.c
gcc -o parse-examl-sse axml.o parsePartitions.o -lm -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/build/examl-3.0.22/parser'
make[2]: Entering directory '/build/examl-3.0.22/parser'
rm -f *.o parse-examl-mmx
gcc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c
gcc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o parsePartitions.o parsePartitions.c
gcc -o parse-examl-mmx axml.o parsePartitions.o -lm -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/build/examl-3.0.22/parser'
/usr/bin/make --directory=examl -f Makefile.AVX.gcc
make[2]: Entering directory '/build/examl-3.0.22/examl'
rm -f *.o examl""
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c
In function ‘initializePartitions’,
inlined from ‘initializeTree’ at axml.c:2217:3,
inlined from ‘main’ at axml.c:2631:5:
axml.c:2121:40: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
2121 | *modelWeights = (unsigned long*) calloc(tr->NumberOfModels, sizeof(unsigned long));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from axml.c:44:
/usr/include/stdlib.h: In function ‘main’:
/usr/include/stdlib.h:556:14: note: in a call to allocation function ‘calloc’ declared here
556 | extern void *calloc (size_t __nmemb, size_t __size)
| ^~~~~~
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o trash.o trash.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o restartHashTable.o restartHashTable.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o avxLikelihood.o avxLikelihood.c
avxLikelihood.c: In function ‘hadd4’:
avxLikelihood.c:32:23: note: the ABI for passing parameters with 32-byte alignment has changed in GCC 4.6
32 | static inline __m256d hadd4(__m256d v, __m256d u)
| ^~~~~
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o byteFile.o byteFile.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o partitionAssignment.o partitionAssignment.c
partitionAssignment.c: In function ‘printAssignment’:
partitionAssignment.c:457:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
457 | printf("p: %d\t(%lu,%lu) -> proc %d\n", a.partId, a.offset, a.width , procid);
| ~~^ ~~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c:457:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
457 | printf("p: %d\t(%lu,%lu) -> proc %d\n", a.partId, a.offset, a.width , procid);
| ~~^ ~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c: In function ‘printAssignments’:
partitionAssignment.c:470:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
470 | printf("%d\t%lu\t%lu\t%d\n", i,a.offset, a.width, a.partId);
| ~~^ ~~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c:470:30: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
470 | printf("%d\t%lu\t%lu\t%d\n", i,a.offset, a.width, a.partId);
| ~~^ ~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c: In function ‘printLoad’:
partitionAssignment.c:498:23: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
498 | printf("%d\t%d\t%lu\n", i, numsPerProc[i], sitesPerProc[i]);
| ~~^ ~~~~~~~~~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o communication.o communication.c
mpicc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o quartets.o quartets.c
mpicc -o examl"" axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/build/examl-3.0.22/examl'
/usr/bin/make --directory=examl -f Makefile.OMP.AVX.gcc
make[2]: Entering directory '/build/examl-3.0.22/examl'
mpicc -o examl-OMP"" axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -fopenmp -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/build/examl-3.0.22/examl'
/usr/bin/make --directory=parser -f Makefile.SSE3.gcc
make[2]: Entering directory '/build/examl-3.0.22/parser'
rm -f *.o parse-examl""
gcc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -O2 -D_GNU_SOURCE -funroll-loops -Wall -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra -Wredundant-decls -Wunused -Wunused-function -Wunused-parameter -Wunused-value -Wunused-variable -Wformat -Wformat-nonliteral -Wparentheses -Wsequence-point -Wuninitialized -Wundef -Wbad-function-cast -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c
axml.c: In function ‘genericBaseFrequencies’:
axml.c:2509:26: warning: comparison is always true due to limited range of data type [-Wtype-limits]
2509 | if(yptr[j] >= 0 && yptr[j] < 20)
| ^~
gcc -g -O2 -ffile-prefix-map=/build/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -O2 -D_GNU_SOURCE -funroll-loops -Wall -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra -Wredundant-decls -Wunused -Wunused-function -Wunused-parameter -Wunused-value -Wunused-variable -Wformat -Wformat-nonliteral -Wparentheses -Wsequence-point -Wuninitialized -Wundef -Wbad-function-cast -Wdate-time -D_FORTIFY_SOURCE=2 -c -o parsePartitions.o parsePartitions.c
gcc -o parse-examl"" axml.o parsePartitions.o -lm -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/build/examl-3.0.22/parser'
make[1]: Leaving directory '/build/examl-3.0.22'
dh_auto_test -O--sourcedirectory=examl
create-stamp debian/debhelper-build-stamp
dh_testroot -O--sourcedirectory=examl
dh_prep -O--sourcedirectory=examl
debian/rules override_dh_auto_install
make[1]: Entering directory '/build/examl-3.0.22'
dh_install debian/bin/simd-dispatch /usr/lib/examl/bin
dh_install examl/examl* parser/parse-examl* /usr/lib/examl/bin/
mkdir -p /build/examl-3.0.22/debian/examl/usr/bin
cd /build/examl-3.0.22/debian/examl/usr/bin \
&& for prog in examl examl-OMP parse-examl ; do \
ln -s ../lib/examl/bin/simd-dispatch ${prog} ; done
make[1]: Leaving directory '/build/examl-3.0.22'
dh_installdocs -O--sourcedirectory=examl
dh_installchangelogs -O--sourcedirectory=examl
dh_installman -O--sourcedirectory=examl
dh_installsystemduser -O--sourcedirectory=examl
dh_perl -O--sourcedirectory=examl
dh_link -O--sourcedirectory=examl
dh_strip_nondeterminism -O--sourcedirectory=examl
dh_compress -O--sourcedirectory=examl
dh_fixperms -O--sourcedirectory=examl
dh_missing -O--sourcedirectory=examl
dh_dwz -a -O--sourcedirectory=examl
dh_strip -a -O--sourcedirectory=examl
dh_makeshlibs -a -O--sourcedirectory=examl
dh_shlibdeps -a -O--sourcedirectory=examl
dh_installdeb -O--sourcedirectory=examl
debian/rules override_dh_gencontrol
make[1]: Entering directory '/build/examl-3.0.22'
dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.7.4~rc2-2), "
make[1]: Leaving directory '/build/examl-3.0.22'
dh_md5sums -O--sourcedirectory=examl
dh_builddeb -O--sourcedirectory=examl
dpkg-deb: building package 'examl' in '../examl_3.0.22-3_i386.deb'.
dpkg-deb: building package 'examl-dbgsym' in '../examl-dbgsym_3.0.22-3_i386.deb'.
dpkg-genbuildinfo --build=binary -O../examl_3.0.22-3_i386.buildinfo
dpkg-genchanges --build=binary -O../examl_3.0.22-3_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/91858 and its subdirectories
I: Current time: Mon May 20 13:35:55 -12 2024
I: pbuilder-time-stamp: 1716255355